Query 048812
Match_columns 645
No_of_seqs 713 out of 4604
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 23:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-36 5.2E-41 335.1 38.5 413 71-522 82-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-35 4.6E-40 327.5 39.3 427 40-504 83-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 7.2E-28 2.5E-32 256.3 21.9 201 145-404 8-224 (501)
4 4g26_A Pentatricopeptide repea 100.0 7.4E-28 2.5E-32 256.2 19.8 205 175-439 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-24 4.9E-29 225.8 40.4 368 52-507 13-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.3E-24 4.5E-29 226.1 39.5 354 79-520 5-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.3E-21 4.5E-26 207.4 29.8 306 157-501 25-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 6.9E-21 2.4E-25 205.3 33.5 166 353-522 302-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 9.5E-21 3.2E-25 200.8 31.3 363 70-510 23-443 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.1E-19 3.7E-24 195.9 34.1 383 51-498 19-489 (514)
11 3fp2_A TPR repeat-containing p 99.9 8.4E-20 2.9E-24 198.1 28.8 403 52-522 39-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.8 4.2E-18 1.4E-22 174.0 34.4 299 157-521 2-335 (359)
13 3fp2_A TPR repeat-containing p 99.8 2.1E-18 7.2E-23 187.1 29.4 392 38-496 55-500 (537)
14 3ieg_A DNAJ homolog subfamily 99.8 2.5E-17 8.6E-22 168.2 32.6 317 104-504 3-352 (359)
15 3hym_B Cell division cycle pro 99.8 5.9E-17 2E-21 163.5 30.7 290 156-508 20-321 (330)
16 1b89_A Protein (clathrin heavy 99.8 5E-19 1.7E-23 179.7 13.2 283 138-515 14-305 (449)
17 1fch_A Peroxisomal targeting s 99.8 3.9E-17 1.3E-21 167.8 23.5 297 171-516 38-354 (368)
18 3hym_B Cell division cycle pro 99.8 1.3E-16 4.3E-21 161.1 26.8 267 189-520 18-298 (330)
19 1b89_A Protein (clathrin heavy 99.8 2.2E-17 7.5E-22 167.7 20.1 321 85-489 15-343 (449)
20 2ooe_A Cleavage stimulation fa 99.7 5.3E-15 1.8E-19 160.2 33.7 175 342-521 304-492 (530)
21 1xi4_A Clathrin heavy chain; a 99.7 4.5E-14 1.5E-18 159.1 41.4 404 37-506 983-1415(1630)
22 2xm6_A Protein corresponding t 99.7 2.4E-14 8.1E-19 153.5 37.4 368 72-504 38-452 (490)
23 1fch_A Peroxisomal targeting s 99.7 5.6E-16 1.9E-20 159.1 23.2 284 139-486 37-358 (368)
24 4eqf_A PEX5-related protein; a 99.7 1.6E-16 5.6E-21 163.2 19.0 270 194-517 66-352 (365)
25 3mkr_A Coatomer subunit epsilo 99.7 2.8E-15 9.7E-20 148.5 26.3 154 358-520 104-263 (291)
26 4g1t_A Interferon-induced prot 99.7 7.3E-15 2.5E-19 156.5 29.7 385 71-531 49-469 (472)
27 4eqf_A PEX5-related protein; a 99.7 4.7E-16 1.6E-20 159.8 18.2 234 227-522 64-311 (365)
28 2xm6_A Protein corresponding t 99.7 2.5E-13 8.5E-18 145.5 37.5 356 101-523 36-434 (490)
29 3cv0_A Peroxisome targeting si 99.7 4.2E-15 1.4E-19 149.6 22.3 150 365-518 148-312 (327)
30 3spa_A Mtrpol, DNA-directed RN 99.7 6.9E-17 2.4E-21 176.4 9.6 135 261-452 127-262 (1134)
31 1xi4_A Clathrin heavy chain; a 99.7 3.1E-13 1.1E-17 152.4 38.1 387 59-514 969-1377(1630)
32 2ooe_A Cleavage stimulation fa 99.6 5.5E-13 1.9E-17 144.3 37.0 381 43-490 15-495 (530)
33 3mkr_A Coatomer subunit epsilo 99.6 4.1E-14 1.4E-18 140.1 25.2 267 168-513 9-286 (291)
34 3cv0_A Peroxisome targeting si 99.6 9.3E-15 3.2E-19 147.1 20.7 267 157-489 20-317 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.6 2.6E-16 8.9E-21 171.9 9.4 147 355-506 127-286 (1134)
36 2pl2_A Hypothetical conserved 99.5 5.5E-13 1.9E-17 125.9 21.3 194 260-518 4-211 (217)
37 4g1t_A Interferon-induced prot 99.5 2.8E-12 9.7E-17 136.3 29.2 369 52-498 65-470 (472)
38 3uq3_A Heat shock protein STI1 99.5 5.8E-13 2E-17 128.8 20.9 225 228-521 5-236 (258)
39 3uq3_A Heat shock protein STI1 99.5 1.4E-12 4.6E-17 126.2 21.3 234 159-499 6-254 (258)
40 3u4t_A TPR repeat-containing p 99.5 1.3E-12 4.6E-17 127.6 20.4 258 160-506 5-269 (272)
41 1xnf_A Lipoprotein NLPI; TPR, 99.5 4E-13 1.4E-17 131.5 15.8 241 207-515 19-269 (275)
42 3e4b_A ALGK; tetratricopeptide 99.5 2.1E-11 7.3E-16 128.7 29.7 307 136-522 44-388 (452)
43 2ho1_A Type 4 fimbrial biogene 99.5 6.8E-12 2.3E-16 121.1 23.2 200 261-522 37-239 (252)
44 2vq2_A PILW, putative fimbrial 99.5 1.3E-11 4.5E-16 116.4 23.2 200 260-521 7-211 (225)
45 2q7f_A YRRB protein; TPR, prot 99.4 2.3E-12 7.7E-17 123.5 17.9 210 228-500 23-235 (243)
46 2ho1_A Type 4 fimbrial biogene 99.4 9.3E-12 3.2E-16 120.1 22.2 206 228-496 37-247 (252)
47 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.8E-16 116.9 22.0 210 226-498 6-222 (225)
48 2h6f_A Protein farnesyltransfe 99.4 3.8E-12 1.3E-16 130.4 19.6 247 158-504 97-365 (382)
49 2q7f_A YRRB protein; TPR, prot 99.4 8.1E-12 2.8E-16 119.6 20.3 200 260-522 22-223 (243)
50 1ouv_A Conserved hypothetical 99.4 5.3E-11 1.8E-15 116.5 25.8 159 355-522 74-252 (273)
51 2pl2_A Hypothetical conserved 99.4 4.2E-12 1.4E-16 119.8 17.1 207 157-452 4-211 (217)
52 3sf4_A G-protein-signaling mod 99.4 4.1E-12 1.4E-16 131.8 18.2 297 156-509 7-364 (406)
53 3u4t_A TPR repeat-containing p 99.4 4E-11 1.4E-15 117.0 22.6 227 135-425 11-253 (272)
54 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.4E-11 4.7E-16 120.5 18.6 243 170-481 17-269 (275)
55 2h6f_A Protein farnesyltransfe 99.4 7.9E-12 2.7E-16 128.1 17.3 228 228-520 97-347 (382)
56 1ouv_A Conserved hypothetical 99.4 1.5E-10 5.2E-15 113.2 25.7 130 355-491 110-255 (273)
57 4a1s_A PINS, partner of inscut 99.4 8.8E-12 3E-16 129.9 17.2 166 355-520 166-371 (411)
58 3sf4_A G-protein-signaling mod 99.4 2.9E-11 1E-15 125.3 20.9 273 191-520 7-335 (406)
59 3ro2_A PINS homolog, G-protein 99.4 2.5E-11 8.5E-16 121.9 19.6 166 356-521 124-332 (338)
60 3e4b_A ALGK; tetratricopeptide 99.4 2.1E-11 7.1E-16 128.8 19.0 369 52-520 17-420 (452)
61 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 106.5 21.6 165 353-522 3-171 (184)
62 4abn_A Tetratricopeptide repea 99.3 8.6E-12 2.9E-16 132.5 15.8 209 244-517 84-317 (474)
63 4gyw_A UDP-N-acetylglucosamine 99.3 9.1E-11 3.1E-15 129.9 19.0 162 354-520 8-173 (723)
64 3nf1_A KLC 1, kinesin light ch 99.3 2E-11 6.9E-16 121.5 12.3 242 227-520 26-306 (311)
65 2ond_A Cleavage stimulation fa 99.3 1.2E-09 4.2E-14 108.9 25.0 218 210-492 33-275 (308)
66 2ond_A Cleavage stimulation fa 99.3 9.9E-10 3.4E-14 109.6 24.0 232 159-452 9-267 (308)
67 3ulq_A Response regulator aspa 99.3 2.9E-10 1E-14 117.3 20.5 296 168-520 22-367 (383)
68 4a1s_A PINS, partner of inscut 99.2 2.2E-10 7.5E-15 119.2 18.9 135 356-490 224-375 (411)
69 3vtx_A MAMA; tetratricopeptide 99.2 6.4E-10 2.2E-14 101.5 19.1 169 260-492 4-175 (184)
70 3nf1_A KLC 1, kinesin light ch 99.2 5E-11 1.7E-15 118.6 12.2 256 157-490 26-310 (311)
71 3as5_A MAMA; tetratricopeptide 99.2 6.5E-10 2.2E-14 100.9 18.4 165 355-522 8-174 (186)
72 3ulq_A Response regulator aspa 99.2 7.3E-10 2.5E-14 114.2 21.0 234 199-488 109-369 (383)
73 4abn_A Tetratricopeptide repea 99.2 6.6E-10 2.2E-14 118.0 20.1 213 173-452 83-318 (474)
74 3ro2_A PINS homolog, G-protein 99.2 3.9E-10 1.3E-14 113.1 17.4 272 161-490 8-335 (338)
75 1hz4_A MALT regulatory protein 99.2 2.7E-08 9.2E-13 101.9 30.8 164 357-520 137-321 (373)
76 4i17_A Hypothetical protein; T 99.2 1E-09 3.5E-14 104.0 18.6 153 353-508 5-169 (228)
77 3as5_A MAMA; tetratricopeptide 99.1 2.7E-09 9.1E-14 96.8 18.3 137 355-494 42-180 (186)
78 4e6h_A MRNA 3'-END-processing 99.1 1.3E-07 4.3E-12 103.5 33.7 133 357-492 436-575 (679)
79 3q15_A PSP28, response regulat 99.1 8.4E-09 2.9E-13 106.0 22.9 302 162-520 14-364 (378)
80 4i17_A Hypothetical protein; T 99.1 5.3E-09 1.8E-13 99.0 19.8 142 356-502 43-224 (228)
81 3q15_A PSP28, response regulat 99.1 6.7E-09 2.3E-13 106.8 21.4 132 356-487 223-365 (378)
82 3edt_B KLC 2, kinesin light ch 99.0 5.6E-09 1.9E-13 101.8 15.4 182 339-520 23-280 (283)
83 3qky_A Outer membrane assembly 99.0 2.5E-08 8.4E-13 96.6 19.6 191 352-567 12-247 (261)
84 1qqe_A Vesicular transport pro 99.0 2.8E-08 9.4E-13 98.2 20.1 164 355-518 77-266 (292)
85 4gyw_A UDP-N-acetylglucosamine 99.0 5.8E-09 2E-13 115.5 16.4 165 260-489 8-176 (723)
86 1qqe_A Vesicular transport pro 99.0 8E-08 2.8E-12 94.8 22.5 135 357-491 119-273 (292)
87 3edt_B KLC 2, kinesin light ch 98.9 6.1E-08 2.1E-12 94.3 19.8 133 355-487 127-281 (283)
88 4e6h_A MRNA 3'-END-processing 98.9 2.5E-06 8.6E-11 93.3 34.1 169 353-522 376-571 (679)
89 1hz4_A MALT regulatory protein 98.9 1.4E-06 4.8E-11 89.0 29.7 221 52-288 28-280 (373)
90 2fo7_A Synthetic consensus TPR 98.9 8.5E-08 2.9E-12 81.4 16.6 129 357-520 3-131 (136)
91 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.3E-07 7.8E-12 87.6 20.2 169 355-523 4-215 (225)
92 2fo7_A Synthetic consensus TPR 98.8 8.9E-08 3E-12 81.3 15.8 95 428-522 3-99 (136)
93 3qky_A Outer membrane assembly 98.8 1.2E-07 4.1E-12 91.7 18.6 154 356-509 53-249 (261)
94 4ga2_A E3 SUMO-protein ligase 98.8 3.3E-09 1.1E-13 93.3 6.8 140 363-507 5-149 (150)
95 3qou_A Protein YBBN; thioredox 98.8 1.1E-07 3.8E-12 93.4 17.8 172 342-518 104-281 (287)
96 3mv2_B Coatomer subunit epsilo 98.8 7.9E-07 2.7E-11 86.5 22.5 248 165-494 20-289 (310)
97 3mv2_B Coatomer subunit epsilo 98.8 7.3E-07 2.5E-11 86.8 21.9 165 353-522 98-283 (310)
98 4ga2_A E3 SUMO-protein ligase 98.7 4.9E-08 1.7E-12 85.6 10.7 121 397-520 4-128 (150)
99 2ifu_A Gamma-SNAP; membrane fu 98.7 5.6E-07 1.9E-11 89.4 19.2 155 356-513 77-253 (307)
100 2pzi_A Probable serine/threoni 98.7 2.2E-07 7.5E-12 103.1 17.3 168 335-507 402-583 (681)
101 3rjv_A Putative SEL1 repeat pr 98.7 1.1E-06 3.6E-11 82.1 18.8 171 343-522 5-198 (212)
102 2r5s_A Uncharacterized protein 98.7 3.2E-07 1.1E-11 82.8 14.1 159 356-519 7-171 (176)
103 2vsy_A XCC0866; transferase, g 98.7 2.6E-07 9E-12 100.5 15.8 157 338-499 3-169 (568)
104 3urz_A Uncharacterized protein 98.7 7.2E-07 2.5E-11 82.9 16.6 128 358-491 57-190 (208)
105 4gco_A Protein STI-1; structur 98.6 3.8E-07 1.3E-11 77.2 12.7 99 422-520 8-109 (126)
106 3gyz_A Chaperone protein IPGC; 98.6 2.7E-07 9.3E-12 80.7 11.6 102 421-522 30-134 (151)
107 3dra_A Protein farnesyltransfe 98.6 1.3E-05 4.4E-10 78.7 24.9 225 210-499 50-300 (306)
108 2pzi_A Probable serine/threoni 98.6 7.9E-07 2.7E-11 98.7 17.3 191 239-495 402-610 (681)
109 2vgx_A Chaperone SYCD; alterna 98.6 2.7E-07 9.3E-12 80.6 10.8 100 422-521 16-118 (148)
110 2vsy_A XCC0866; transferase, g 98.6 1E-06 3.4E-11 95.8 17.3 150 368-522 2-158 (568)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.4E-06 4.8E-11 81.0 15.6 122 396-522 12-151 (213)
112 3urz_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 81.8 14.5 56 233-288 59-115 (208)
113 2ifu_A Gamma-SNAP; membrane fu 98.5 4.3E-06 1.5E-10 82.9 19.7 205 117-417 4-222 (307)
114 2yhc_A BAMD, UPF0169 lipoprote 98.5 3.8E-06 1.3E-10 79.1 17.9 63 431-493 152-219 (225)
115 4gco_A Protein STI-1; structur 98.5 9.3E-07 3.2E-11 74.8 12.2 107 392-501 15-124 (126)
116 3qou_A Protein YBBN; thioredox 98.5 2.5E-06 8.4E-11 83.8 16.4 64 225-288 114-178 (287)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5.3E-06 1.8E-10 77.0 17.4 129 356-491 7-154 (213)
118 3u3w_A Transcriptional activat 98.5 7.1E-06 2.4E-10 80.7 19.1 162 359-520 79-265 (293)
119 2qfc_A PLCR protein; TPR, HTH, 98.5 6.2E-06 2.1E-10 81.1 18.5 165 355-519 75-264 (293)
120 2xcb_A PCRH, regulatory protei 98.5 2E-06 6.8E-11 74.3 13.2 100 422-521 13-115 (142)
121 1na0_A Designed protein CTPR3; 98.5 3.6E-06 1.2E-10 70.1 14.1 80 427-506 44-125 (125)
122 2r5s_A Uncharacterized protein 98.4 1.3E-06 4.6E-11 78.6 11.8 146 139-287 18-170 (176)
123 1a17_A Serine/threonine protei 98.4 4.6E-06 1.6E-10 73.7 14.9 95 426-520 47-145 (166)
124 2vyi_A SGTA protein; chaperone 98.4 5.4E-06 1.8E-10 69.6 14.2 84 426-509 46-131 (131)
125 3dra_A Protein farnesyltransfe 98.4 1.8E-05 6.2E-10 77.6 19.4 214 243-520 48-286 (306)
126 3upv_A Heat shock protein STI1 98.4 3.5E-06 1.2E-10 70.9 12.4 96 426-521 4-101 (126)
127 1p5q_A FKBP52, FK506-binding p 98.4 2.6E-06 9E-11 85.6 13.2 143 354-519 146-292 (336)
128 2c2l_A CHIP, carboxy terminus 98.4 1.1E-06 3.8E-11 86.0 10.1 160 354-521 37-199 (281)
129 2lni_A Stress-induced-phosphop 98.4 3.3E-06 1.1E-10 71.3 11.9 119 354-507 15-133 (133)
130 2uy1_A Cleavage stimulation fa 98.4 2.2E-05 7.4E-10 83.2 20.6 168 342-518 197-380 (493)
131 2uy1_A Cleavage stimulation fa 98.3 0.00015 5.3E-09 76.6 26.2 124 356-486 287-412 (493)
132 2fbn_A 70 kDa peptidylprolyl i 98.3 6.6E-07 2.3E-11 82.4 5.8 95 427-521 89-186 (198)
133 2e2e_A Formate-dependent nitri 98.3 3.2E-06 1.1E-10 76.0 10.2 117 403-522 23-145 (177)
134 3u3w_A Transcriptional activat 98.3 8E-05 2.8E-09 73.0 21.1 130 358-487 118-266 (293)
135 4f3v_A ESX-1 secretion system 98.3 6E-05 2E-09 72.3 19.0 139 230-429 104-244 (282)
136 3q7a_A Farnesyltransferase alp 98.3 0.00047 1.6E-08 68.4 26.0 220 211-495 72-340 (349)
137 2qfc_A PLCR protein; TPR, HTH, 98.3 2.8E-05 9.7E-10 76.3 17.4 127 360-486 120-265 (293)
138 3gw4_A Uncharacterized protein 98.3 1.7E-05 5.8E-10 72.7 14.8 153 367-520 4-175 (203)
139 1na0_A Designed protein CTPR3; 98.2 1.1E-05 3.9E-10 66.9 11.9 96 426-521 9-106 (125)
140 3q49_B STIP1 homology and U bo 98.2 1.2E-05 4.1E-10 68.5 12.2 97 425-521 8-106 (137)
141 3gw4_A Uncharacterized protein 98.2 0.0001 3.4E-09 67.4 19.4 154 239-450 3-171 (203)
142 1hxi_A PEX5, peroxisome target 98.2 5E-06 1.7E-10 69.6 9.4 95 428-522 19-115 (121)
143 2kck_A TPR repeat; tetratricop 98.2 6.4E-06 2.2E-10 67.1 9.9 97 426-522 6-107 (112)
144 3rjv_A Putative SEL1 repeat pr 98.2 0.00011 3.9E-09 68.1 19.5 126 156-288 16-156 (212)
145 1elw_A TPR1-domain of HOP; HOP 98.2 1.2E-05 4E-10 66.1 11.5 91 429-519 7-99 (118)
146 3sz7_A HSC70 cochaperone (SGT) 98.2 1E-05 3.5E-10 71.7 11.5 103 390-495 11-116 (164)
147 4f3v_A ESX-1 secretion system 98.2 3.4E-05 1.2E-09 74.0 15.6 182 336-522 18-238 (282)
148 2e2e_A Formate-dependent nitri 98.2 1.6E-05 5.6E-10 71.3 12.8 126 366-495 21-152 (177)
149 1elw_A TPR1-domain of HOP; HOP 98.2 3.6E-05 1.2E-09 63.0 13.9 108 392-502 6-116 (118)
150 3dss_A Geranylgeranyl transfer 98.2 0.00012 4.1E-09 72.3 19.6 145 353-502 142-319 (331)
151 2dba_A Smooth muscle cell asso 98.2 3.2E-05 1.1E-09 66.6 13.9 115 354-502 27-143 (148)
152 3gyz_A Chaperone protein IPGC; 98.2 1.5E-05 5.1E-10 69.5 11.6 104 386-492 31-138 (151)
153 2lni_A Stress-induced-phosphop 98.2 1.5E-05 5.2E-10 67.1 11.5 97 425-521 15-113 (133)
154 2vyi_A SGTA protein; chaperone 98.2 3E-05 1E-09 64.9 13.1 97 425-521 11-109 (131)
155 1a17_A Serine/threonine protei 98.2 4.6E-05 1.6E-09 67.1 14.8 127 356-486 14-145 (166)
156 1wao_1 Serine/threonine protei 98.1 1E-05 3.6E-10 85.4 12.3 116 399-517 15-135 (477)
157 2vgx_A Chaperone SYCD; alterna 98.1 5.9E-06 2E-10 72.0 8.3 103 390-495 21-126 (148)
158 2dba_A Smooth muscle cell asso 98.1 2.5E-05 8.5E-10 67.3 12.2 97 425-521 27-128 (148)
159 1wao_1 Serine/threonine protei 98.1 3.5E-05 1.2E-09 81.4 15.6 116 362-482 13-134 (477)
160 3rkv_A Putative peptidylprolyl 98.1 2.7E-05 9.4E-10 68.7 11.9 63 458-520 63-125 (162)
161 3sz7_A HSC70 cochaperone (SGT) 98.1 3.4E-05 1.2E-09 68.2 12.5 95 354-452 10-105 (164)
162 2xcb_A PCRH, regulatory protei 98.1 2.4E-05 8.1E-10 67.4 10.5 101 395-498 23-126 (142)
163 4gcn_A Protein STI-1; structur 98.0 2.1E-05 7.3E-10 66.3 9.8 94 427-520 9-111 (127)
164 3upv_A Heat shock protein STI1 98.0 6.7E-05 2.3E-09 62.8 12.7 106 394-502 8-122 (126)
165 3dss_A Geranylgeranyl transfer 98.0 0.00069 2.4E-08 66.8 21.0 167 352-522 105-305 (331)
166 2hr2_A Hypothetical protein; a 98.0 3.3E-05 1.1E-09 66.9 9.5 62 459-520 58-130 (159)
167 2xev_A YBGF; tetratricopeptide 98.0 3.4E-05 1.2E-09 64.8 9.6 88 433-520 9-104 (129)
168 1elr_A TPR2A-domain of HOP; HO 97.9 3.5E-05 1.2E-09 64.5 9.4 96 426-521 4-108 (131)
169 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 7.8E-05 2.7E-09 78.3 13.9 144 354-519 267-413 (457)
170 3k9i_A BH0479 protein; putativ 97.9 8.6E-06 2.9E-10 67.6 5.2 62 459-520 28-89 (117)
171 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00015 5.3E-09 66.2 14.2 93 428-520 40-150 (198)
172 1p5q_A FKBP52, FK506-binding p 97.9 4.2E-05 1.4E-09 76.7 11.2 147 141-288 127-292 (336)
173 3q49_B STIP1 homology and U bo 97.9 9.1E-05 3.1E-09 62.9 11.8 98 390-490 9-109 (137)
174 3ro3_A PINS homolog, G-protein 97.9 7.7E-05 2.6E-09 65.0 11.6 137 355-520 9-157 (164)
175 4b4t_Q 26S proteasome regulato 97.9 0.00033 1.1E-08 72.7 18.0 163 357-519 57-243 (434)
176 3q7a_A Farnesyltransferase alp 97.9 0.00089 3E-08 66.4 19.8 217 52-293 68-335 (349)
177 1elr_A TPR2A-domain of HOP; HO 97.9 0.00018 6.3E-09 60.0 13.1 115 356-503 5-123 (131)
178 2xev_A YBGF; tetratricopeptide 97.9 0.00015 5.2E-09 60.7 12.2 100 399-498 11-116 (129)
179 2kck_A TPR repeat; tetratricop 97.9 0.00012 4.2E-09 59.1 11.2 95 395-492 11-111 (112)
180 4gcn_A Protein STI-1; structur 97.9 0.0002 6.8E-09 60.2 12.7 62 355-418 8-70 (127)
181 3n71_A Histone lysine methyltr 97.8 0.00017 5.8E-09 75.7 14.5 123 400-522 319-465 (490)
182 3ro3_A PINS homolog, G-protein 97.8 8E-05 2.7E-09 64.9 10.2 92 326-417 11-116 (164)
183 2c2l_A CHIP, carboxy terminus 97.8 0.00011 3.8E-09 71.6 12.1 105 389-496 3-110 (281)
184 1ihg_A Cyclophilin 40; ppiase 97.8 0.00015 5.2E-09 73.6 12.3 137 355-513 223-362 (370)
185 1hxi_A PEX5, peroxisome target 97.7 0.00013 4.5E-09 60.7 9.5 98 358-491 20-118 (121)
186 2if4_A ATFKBP42; FKBP-like, al 97.7 5.7E-05 2E-09 75.8 8.3 148 354-521 178-328 (338)
187 2hr2_A Hypothetical protein; a 97.7 8.3E-05 2.8E-09 64.4 7.9 111 355-496 11-140 (159)
188 3k9i_A BH0479 protein; putativ 97.7 5.2E-05 1.8E-09 62.7 6.4 92 403-495 3-98 (117)
189 2l6j_A TPR repeat-containing p 97.7 0.0001 3.5E-09 59.8 7.8 92 425-516 3-102 (111)
190 1dce_A Protein (RAB geranylger 97.7 0.0022 7.4E-08 68.9 20.2 153 354-510 62-244 (567)
191 3rkv_A Putative peptidylprolyl 97.7 0.0002 6.8E-09 63.0 10.0 121 355-501 11-141 (162)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00046 1.6E-08 72.4 14.4 64 458-521 317-380 (457)
193 4b4t_Q 26S proteasome regulato 97.7 0.00046 1.6E-08 71.6 14.3 158 363-520 12-203 (434)
194 1ihg_A Cyclophilin 40; ppiase 97.7 0.00027 9.2E-09 71.8 12.0 113 390-521 223-336 (370)
195 2if4_A ATFKBP42; FKBP-like, al 97.7 0.0001 3.5E-09 74.0 8.8 148 327-492 182-333 (338)
196 1na3_A Designed protein CTPR2; 97.6 0.00029 9.8E-09 54.6 9.6 81 426-506 9-91 (91)
197 3ma5_A Tetratricopeptide repea 97.6 0.00022 7.5E-09 57.0 8.9 65 456-520 5-69 (100)
198 2kat_A Uncharacterized protein 97.5 0.00024 8.3E-09 58.3 7.6 76 445-520 4-81 (115)
199 3bee_A Putative YFRE protein; 97.4 0.00091 3.1E-08 52.4 9.3 68 455-522 3-73 (93)
200 3n71_A Histone lysine methyltr 97.4 0.0011 3.9E-08 69.4 12.4 116 435-568 318-451 (490)
201 3qwp_A SET and MYND domain-con 97.3 0.0016 5.6E-08 67.2 12.4 115 434-566 295-427 (429)
202 1zu2_A Mitochondrial import re 97.3 0.00024 8.1E-09 61.4 5.0 85 438-522 14-121 (158)
203 2l6j_A TPR repeat-containing p 97.2 0.00095 3.2E-08 53.8 8.0 67 456-522 2-68 (111)
204 1klx_A Cysteine rich protein B 97.1 0.003 1E-07 53.8 10.3 110 369-487 9-126 (138)
205 1na3_A Designed protein CTPR2; 97.1 0.0036 1.2E-07 48.1 10.0 65 457-521 8-72 (91)
206 1klx_A Cysteine rich protein B 97.0 0.0055 1.9E-07 52.1 11.3 113 403-523 8-128 (138)
207 1zu2_A Mitochondrial import re 97.0 0.00069 2.4E-08 58.5 5.2 125 366-522 13-148 (158)
208 3mkq_A Coatomer beta'-subunit; 96.9 0.007 2.4E-07 68.3 14.4 151 84-253 610-761 (814)
209 3ly7_A Transcriptional activat 96.9 0.012 4.1E-07 58.2 14.0 138 352-491 191-343 (372)
210 3qww_A SET and MYND domain-con 96.9 0.0057 2E-07 63.0 11.7 93 402-494 310-423 (433)
211 3qww_A SET and MYND domain-con 96.9 0.0026 9E-08 65.5 9.0 102 439-558 311-430 (433)
212 3qwp_A SET and MYND domain-con 96.8 0.01 3.5E-07 61.1 13.1 100 398-497 295-415 (429)
213 1pc2_A Mitochondria fission pr 96.7 0.0094 3.2E-07 50.8 10.0 90 456-571 30-124 (152)
214 1wy6_A Hypothetical protein ST 96.7 0.1 3.5E-06 42.7 15.0 139 367-524 19-157 (172)
215 2kat_A Uncharacterized protein 96.7 0.0049 1.7E-07 50.2 7.9 65 353-418 17-81 (115)
216 3ma5_A Tetratricopeptide repea 96.7 0.0084 2.9E-07 47.5 9.0 83 353-436 5-87 (100)
217 1dce_A Protein (RAB geranylger 96.6 0.032 1.1E-06 59.8 16.0 85 353-441 141-241 (567)
218 2kc7_A BFR218_protein; tetratr 96.6 0.011 3.9E-07 46.3 9.4 64 432-495 6-72 (99)
219 2kc7_A BFR218_protein; tetratr 96.4 0.0078 2.7E-07 47.2 7.0 59 464-522 6-65 (99)
220 3ly7_A Transcriptional activat 96.1 0.053 1.8E-06 53.7 12.4 133 386-522 190-340 (372)
221 3lvg_A Clathrin heavy chain 1; 96.0 0.00011 3.9E-09 73.9 -7.3 321 140-510 38-428 (624)
222 2v5f_A Prolyl 4-hydroxylase su 95.6 0.071 2.4E-06 42.4 9.2 73 426-498 5-86 (104)
223 3u64_A Protein TP_0956; tetrat 95.5 0.041 1.4E-06 52.2 8.5 86 443-528 180-276 (301)
224 3mkq_A Coatomer beta'-subunit; 95.3 0.11 3.8E-06 58.4 13.2 152 338-516 613-773 (814)
225 1nzn_A CGI-135 protein, fissio 94.8 0.13 4.5E-06 42.1 8.5 65 456-520 33-102 (126)
226 3bee_A Putative YFRE protein; 94.7 0.2 6.8E-06 38.8 9.1 76 424-500 4-84 (93)
227 3mkq_B Coatomer subunit alpha; 94.6 0.73 2.5E-05 40.2 13.2 127 138-288 16-142 (177)
228 1pc2_A Mitochondria fission pr 94.2 0.15 5.3E-06 43.3 7.8 90 372-494 15-107 (152)
229 1y8m_A FIS1; mitochondria, unk 93.9 1.6 5.4E-05 36.4 13.1 90 456-571 37-130 (144)
230 1wy6_A Hypothetical protein ST 93.7 1.6 5.5E-05 35.8 12.4 138 85-225 19-157 (172)
231 3lvg_A Clathrin heavy chain 1; 93.5 0.053 1.8E-06 55.0 4.1 229 40-282 82-325 (624)
232 3u64_A Protein TP_0956; tetrat 93.1 0.14 4.7E-06 48.7 6.2 104 407-519 180-296 (301)
233 2v5f_A Prolyl 4-hydroxylase su 92.7 0.45 1.6E-05 37.5 8.1 64 457-520 4-74 (104)
234 3mkq_B Coatomer subunit alpha; 90.1 2.2 7.5E-05 37.2 10.0 98 402-517 17-114 (177)
235 2p58_C Putative type III secre 90.0 2.7 9.3E-05 32.2 9.0 81 108-197 27-107 (116)
236 4h7y_A Dual specificity protei 89.9 1.7 5.7E-05 36.6 8.6 51 472-522 74-124 (161)
237 4gns_B Protein CSD3, chitin bi 89.8 1.3 4.4E-05 48.5 10.3 52 467-518 346-397 (754)
238 1qsa_A Protein (soluble lytic 89.8 24 0.00081 37.7 24.9 112 369-486 228-347 (618)
239 3o48_A Mitochondria fission 1 89.5 1.8 6.2E-05 35.5 8.5 47 474-520 59-106 (134)
240 1nzn_A CGI-135 protein, fissio 89.4 2.4 8.3E-05 34.5 9.2 34 462-495 78-111 (126)
241 2uwj_G Type III export protein 89.3 2.6 8.9E-05 32.3 8.4 81 108-197 26-106 (115)
242 4h7y_A Dual specificity protei 88.7 5.2 0.00018 33.6 10.7 38 351-389 9-52 (161)
243 2ff4_A Probable regulatory pro 85.7 1.9 6.6E-05 43.4 8.2 66 462-527 175-245 (388)
244 4b4t_P 26S proteasome regulato 84.5 22 0.00076 36.2 15.6 181 338-520 30-246 (445)
245 3lpz_A GET4 (YOR164C homolog); 82.7 36 0.0012 32.9 22.1 108 169-278 66-184 (336)
246 2wpv_A GET4, UPF0363 protein Y 81.3 39 0.0013 32.4 20.1 111 168-280 63-187 (312)
247 1v54_E Cytochrome C oxidase po 81.3 8.5 0.00029 29.7 7.9 49 451-499 38-86 (109)
248 4gns_B Protein CSD3, chitin bi 81.0 4.6 0.00016 44.1 9.1 123 164-288 254-398 (754)
249 2ff4_A Probable regulatory pro 79.6 8.4 0.00029 38.6 10.1 68 358-426 174-245 (388)
250 4ady_A RPN2, 26S proteasome re 79.4 76 0.0026 35.6 18.0 96 363-461 568-664 (963)
251 1v54_E Cytochrome C oxidase po 76.6 13 0.00044 28.8 7.6 62 371-434 26-87 (109)
252 3ffl_A Anaphase-promoting comp 75.6 15 0.0005 31.5 8.7 60 360-419 25-92 (167)
253 4fhn_B Nucleoporin NUP120; pro 73.3 30 0.001 40.2 13.8 66 459-524 900-970 (1139)
254 3esl_A Checkpoint serine/threo 72.6 31 0.0011 30.5 10.4 103 443-571 61-169 (202)
255 3ffl_A Anaphase-promoting comp 71.8 34 0.0012 29.2 10.1 59 163-221 25-91 (167)
256 3eiq_C Programmed cell death p 71.2 80 0.0028 30.9 18.0 74 231-304 220-296 (358)
257 1zbp_A Hypothetical protein VP 70.6 50 0.0017 30.7 11.7 51 366-417 8-58 (273)
258 4fhn_B Nucleoporin NUP120; pro 69.7 94 0.0032 36.1 16.9 85 196-280 902-990 (1139)
259 2y69_E Cytochrome C oxidase su 69.4 23 0.00078 29.0 7.9 51 449-499 79-129 (152)
260 2uwj_G Type III export protein 68.6 38 0.0013 26.0 10.4 82 207-294 20-101 (115)
261 3o48_A Mitochondria fission 1 68.5 37 0.0013 27.7 9.2 30 463-492 83-112 (134)
262 4ady_A RPN2, 26S proteasome re 68.3 1.6E+02 0.0054 33.1 26.7 149 367-519 502-656 (963)
263 2p58_C Putative type III secre 67.7 40 0.0014 26.0 11.0 82 207-294 21-102 (116)
264 1zbp_A Hypothetical protein VP 67.4 11 0.00039 35.1 6.7 57 435-491 6-64 (273)
265 2y69_E Cytochrome C oxidase su 66.6 27 0.00093 28.6 7.8 60 176-236 71-130 (152)
266 1y8m_A FIS1; mitochondria, unk 63.9 62 0.0021 26.8 12.3 32 462-493 81-112 (144)
267 3kea_A K1L; tropism, ANK repea 61.8 61 0.0021 30.3 11.3 165 60-253 46-217 (285)
268 4a1g_A Mitotic checkpoint seri 60.5 62 0.0021 27.1 9.5 50 475-524 82-133 (152)
269 3txn_A 26S proteasome regulato 60.4 1.4E+02 0.0047 29.7 16.1 163 356-518 20-207 (394)
270 3txn_A 26S proteasome regulato 57.4 1.5E+02 0.0053 29.3 17.4 93 360-452 104-207 (394)
271 2wvi_A Mitotic checkpoint seri 56.1 78 0.0027 26.9 9.5 49 476-524 78-128 (164)
272 3mv2_A Coatomer subunit alpha; 55.9 96 0.0033 29.7 11.0 61 448-522 195-257 (325)
273 4b4t_R RPN7, 26S proteasome re 50.6 1.3E+02 0.0046 30.1 12.2 94 357-452 133-234 (429)
274 1k1a_A B-cell lymphoma 3-encod 50.3 97 0.0033 27.5 10.3 51 52-102 20-72 (241)
275 2qx5_A Nucleoporin NIC96; mRNA 50.3 2.6E+02 0.0088 29.9 14.5 32 426-457 533-569 (661)
276 3jxi_A Vanilloid receptor-rela 49.3 27 0.00092 32.1 6.3 54 46-99 8-72 (260)
277 2nsz_A Programmed cell death p 49.2 40 0.0014 27.4 6.4 74 231-304 10-86 (129)
278 4b4t_P 26S proteasome regulato 47.0 2.4E+02 0.0082 28.4 23.0 95 358-452 140-244 (445)
279 3lpz_A GET4 (YOR164C homolog); 46.6 2.1E+02 0.0071 27.6 23.0 125 379-520 83-215 (336)
280 1wdy_A 2-5A-dependent ribonucl 45.2 1.8E+02 0.0061 26.4 14.2 114 167-286 154-275 (285)
281 4b4t_R RPN7, 26S proteasome re 43.4 42 0.0014 34.0 7.0 96 392-488 133-238 (429)
282 2rfa_A Transient receptor pote 43.3 1.7E+02 0.0059 25.7 10.9 23 77-99 38-60 (232)
283 1ug3_A EIF4GI, eukaryotic prot 42.8 1.8E+02 0.0061 28.1 11.2 149 76-253 14-166 (339)
284 3ltm_A Alpha-REP4; protein eng 42.8 1.7E+02 0.0057 25.4 16.5 119 148-276 23-141 (211)
285 3b7b_A Euchromatic histone-lys 41.3 1.4E+02 0.0047 26.4 9.8 197 52-288 22-234 (237)
286 2ion_A PDCD4, programmed cell 40.7 37 0.0013 28.5 5.1 74 231-304 12-88 (152)
287 2l0z_A Glycoprotein G2; zinc-b 39.9 7.8 0.00027 23.9 0.5 18 627-644 11-29 (42)
288 3ltm_A Alpha-REP4; protein eng 35.6 2.2E+02 0.0074 24.7 17.4 130 152-292 58-188 (211)
289 3ltj_A Alpharep-4; protein eng 34.4 2.2E+02 0.0075 24.4 17.8 122 145-276 15-136 (201)
290 1wdy_A 2-5A-dependent ribonucl 34.3 2.6E+02 0.0089 25.2 10.8 112 164-286 8-127 (285)
291 2d2s_A Exocyst complex compone 33.7 1.2E+02 0.0042 27.5 7.8 23 164-186 24-46 (235)
292 3eu9_A Huntingtin-interacting 33.0 1.8E+02 0.006 25.6 9.1 197 52-288 20-234 (240)
293 1n11_A Ankyrin; clathrin, BAND 32.9 3.3E+02 0.011 26.8 12.0 188 52-253 25-234 (437)
294 4gq2_M Nucleoporin NUP120; bet 32.8 4.3E+02 0.015 29.8 13.7 91 396-492 816-932 (950)
295 3aji_A 26S proteasome non-ATPa 32.2 2.5E+02 0.0085 24.5 9.9 49 235-286 143-194 (231)
296 2nsz_A Programmed cell death p 32.1 1.3E+02 0.0044 24.3 6.9 71 161-232 10-82 (129)
297 4b4t_S RPN3, 26S proteasome re 31.8 4.4E+02 0.015 27.1 15.8 183 261-523 231-431 (523)
298 3ltj_A Alpharep-4; protein eng 31.4 2.5E+02 0.0084 24.0 16.9 81 155-243 87-167 (201)
299 3eu9_A Huntingtin-interacting 31.4 2.4E+02 0.0081 24.7 9.7 166 52-253 53-232 (240)
300 2d2s_A Exocyst complex compone 31.2 1.6E+02 0.0055 26.7 8.1 88 361-452 24-117 (235)
301 3bqo_A Telomeric repeat-bindin 31.0 2.3E+02 0.0078 24.9 8.3 60 442-501 94-160 (211)
302 3mkr_B Coatomer subunit alpha; 30.2 2.2E+02 0.0074 27.2 8.9 61 448-522 186-248 (320)
303 3ygs_P Procaspase 9; apoptosis 29.5 50 0.0017 25.2 3.7 38 141-178 51-88 (97)
304 2xig_A Ferric uptake regulatio 29.0 1.5E+02 0.0051 24.6 7.0 37 406-443 42-78 (150)
305 2hgo_A CASSIICOLIN; toxin, dis 29.0 12 0.0004 19.9 0.0 13 633-645 8-22 (27)
306 2ion_A PDCD4, programmed cell 27.8 98 0.0033 25.9 5.6 72 160-232 11-84 (152)
307 4aez_C MAD3, mitotic spindle c 27.8 1.3E+02 0.0043 27.1 6.5 49 475-523 131-181 (223)
308 3esl_A Checkpoint serine/threo 27.6 3.2E+02 0.011 24.1 10.8 84 340-425 60-149 (202)
309 2fe3_A Peroxide operon regulat 27.1 1.5E+02 0.0053 24.3 6.8 62 380-443 12-73 (145)
310 3e3v_A Regulatory protein RECX 26.7 1.5E+02 0.005 25.5 6.7 31 427-457 137-168 (177)
311 1ug3_A EIF4GI, eukaryotic prot 25.4 2.2E+02 0.0076 27.4 8.6 73 231-303 14-88 (339)
312 2r9g_A AAA ATPase, central reg 25.4 2.6E+02 0.0089 24.6 7.8 64 160-224 13-84 (204)
313 2zu6_B Programmed cell death p 24.6 4.5E+02 0.015 24.8 14.3 74 231-304 169-245 (307)
314 1k1a_A B-cell lymphoma 3-encod 24.4 3.6E+02 0.012 23.5 9.6 177 77-286 10-205 (241)
315 3twe_A Alpha4H; unknown functi 24.2 75 0.0026 16.8 2.5 18 550-567 2-19 (27)
316 2wpv_A GET4, UPF0363 protein Y 24.1 4.7E+02 0.016 24.8 21.4 79 425-519 133-215 (312)
317 4b4t_S RPN3, 26S proteasome re 24.1 1.6E+02 0.0055 30.3 7.3 61 390-452 231-296 (523)
318 4ets_A Ferric uptake regulatio 23.8 1.4E+02 0.0046 25.3 5.9 71 372-443 14-86 (162)
319 4a1g_A Mitotic checkpoint seri 22.3 3.4E+02 0.012 22.6 9.2 54 175-228 82-136 (152)
320 2etb_A Transient receptor pote 21.5 93 0.0032 28.2 4.8 181 45-253 4-243 (256)
321 4aez_C MAD3, mitotic spindle c 21.1 3.7E+02 0.013 24.1 8.2 83 143-228 100-185 (223)
322 3hra_A Ankyrin repeat family p 21.0 3.7E+02 0.013 22.6 9.0 136 58-217 52-199 (201)
323 2p1h_A APAF-1, apoptotic prote 20.6 1.3E+02 0.0045 22.4 4.7 40 138-177 47-86 (94)
324 2k0q_A Putative uncharacterize 20.3 28 0.00096 24.5 0.6 23 621-643 8-30 (74)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-36 Score=335.15 Aligned_cols=413 Identities=11% Similarity=0.047 Sum_probs=348.7
Q ss_pred CChhhhhhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHHHHHHHHHcCChhHHHHHHHHHhh--cC--------chhh
Q 048812 71 RDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQLINGYPQEVFAIYLYLVT--RT--------VLLN 138 (645)
Q Consensus 71 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--------~~~~ 138 (645)
+++..++.++..|.+.|++++|..+|++|. .||..+|+.++.+|.+.|++++|+.+|+++.. .+ .+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 567788888888888888888888888875 56778888888888888888888888888843 22 7788
Q ss_pred ccCChHHHHHHHccCC-CC------------------CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hhHHH
Q 048812 139 KCGKLKEVCQLFDKLP-NR------------------DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE-VTMVS 198 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~-~~------------------~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 198 (645)
++|++++|.++|+++. .. ++.+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 239 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQ 239 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHH
Confidence 8999999999999543 33 47899999999999999999999999998864 432 23332
Q ss_pred H--------------------------------------HHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 048812 199 L--------------------------------------ISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240 (645)
Q Consensus 199 l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 240 (645)
+ +..|.+.|++++|.+++..+.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 2 44556678888888888887765 5788888889999999
Q ss_pred cCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc---cCCchhHHHHHHhhhccCCchhhhhhcc
Q 048812 241 CGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV---ERNLISWTLMISGMLNQDAEFKYKSCAS 316 (645)
Q Consensus 241 ~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~t~~~ll~~~~~~~~~~~~~a~~~ 316 (645)
.|++++|.++|+++....| +..+|+.++.+|.+.|++++|.++|+++. ..+..+|..+...|.+.|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 387 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN---------- 387 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT----------
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc----------
Confidence 9999999998888543333 67788889999999999999999998886 234667777777777766
Q ss_pred ccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048812 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393 (645)
Q Consensus 317 ~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 393 (645)
++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++
T Consensus 388 ----------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 444 (597)
T 2xpi_A 388 ----------------------KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPY 444 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHH
T ss_pred ----------------------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 8899999998764 3568899999999999999999999999999863 4478999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHH
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-------PIPPD--VSIWSSL 464 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd--~~~~~~l 464 (645)
..++.+|.+.|++++|.++|+++.+. ...+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 99999999999999999999999853 2336889999999999999999999999987 55787 7899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+.+|.+.|++++|.+.++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999997743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-35 Score=327.53 Aligned_cols=427 Identities=8% Similarity=0.002 Sum_probs=288.9
Q ss_pred ChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhC--CCCCcccHHHHHHHH
Q 048812 40 VSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQG--DEPEIKIWNSIIENQ 114 (645)
Q Consensus 40 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~ 114 (645)
+...+..+++.+ +++++|..++..+++. .|+..+++.+...|.+.|++++|..+|+++ .+++..+|+.++.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 444444444443 5555555555555533 244455555555555555555555555555 244555555555555
Q ss_pred HHcCChhHHHHHHHHHh-hc------------------C--------chhhccCChHHHHHHHccCCC--C-Ccch----
Q 048812 115 LINGYPQEVFAIYLYLV-TR------------------T--------VLLNKCGKLKEVCQLFDKLPN--R-DVIS---- 160 (645)
Q Consensus 115 ~~~g~~~~A~~~~~~m~-~~------------------~--------~~~~~~g~~~~A~~~f~~m~~--~-~~~~---- 160 (645)
.+.|++++|+.+|+++. .. + ..|.+.|++++|.++|++|.+ | +..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 55555555555555221 11 0 445555555555555555542 2 1112
Q ss_pred ----------------------------------HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcC
Q 048812 161 ----------------------------------WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKL 206 (645)
Q Consensus 161 ----------------------------------~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 206 (645)
|+.++..|.+.|++++|+++|++|.+. +++..++..++.++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 222234445556666666666666544 35666666666666666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFD 285 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 285 (645)
|++++|.+++..+.+.+ +.+..+++.++.+|.+.|++++|.++|+++....| +..+|+.++..|.+.|++++|.++|+
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66666666666666554 33555666666666666666666666665322222 45566666666666666666666666
Q ss_pred hcc--c-CCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cCChhHHH
Q 048812 286 EMV--E-RNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EKNVYLWT 359 (645)
Q Consensus 286 ~m~--~-~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~~~~~ 359 (645)
++. . .+..+|+.+..+|.+.| ++++|.++|+++. ..+..+|+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g--------------------------------~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEG--------------------------------EHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHT--------------------------------CHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcC--------------------------------CHHHHHHHHHHHHHhCccchHHHH
Confidence 654 2 23445666665555554 5666666665543 34788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY---NIKPK--MQHYGCMVD 434 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~ 434 (645)
.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...|.+.|++++|.++|+++.+.. +..|+ ..+|..++.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 99999999999999999999999863 4478999999999999999999999999998532 66887 789999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|.+.++++++++|+++..+..|.++|..
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999987 3334 789999999999999999999999999999999999999999988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.2e-28 Score=256.27 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=164.4
Q ss_pred HHHHHHccCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC---------hH
Q 048812 145 EVCQLFDKLPNR-----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD---------LE 210 (645)
Q Consensus 145 ~A~~~f~~m~~~-----~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~ 210 (645)
.+..+++++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555555432 2345888999999999999999999999999999999999999999987654 57
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID--EVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|... .||..+||+||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999986443 5788888888888888888888888888887
Q ss_pred cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 289 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
+.+. .||..+|++||.+|++.
T Consensus 168 ~~G~-----------------------------------------------------------~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 168 ESEV-----------------------------------------------------------VPEEPELAALLKVSMDT 188 (501)
T ss_dssp HTTC-----------------------------------------------------------CCCHHHHHHHHHHHHHT
T ss_pred hcCC-----------------------------------------------------------CCCHHHHHHHHHHHhhC
Confidence 6664 58888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG 404 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 404 (645)
|+.++|.++|++|++.|..|+..||+.++..|+..+
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 888888888888888888888888888888877643
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=7.4e-28 Score=256.20 Aligned_cols=205 Identities=13% Similarity=0.120 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCC---------H
Q 048812 175 REGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGK---------I 244 (645)
Q Consensus 175 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 244 (645)
..+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||++|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 45666778888888776554 6889999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHcccCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 245 GEAQKLLGRYEID--EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 245 ~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
+.|.++|++|... .||.+|||+||.+|++.|++++|.++|++|.+.+.
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------------------------ 136 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------------------------ 136 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------------------
Confidence 8999999997543 58999999999999999999999999999987665
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH 402 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 402 (645)
.||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|++
T Consensus 137 -----------------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 137 -----------------------------QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp -----------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred -----------------------------CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHc
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRA 439 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 439 (645)
.|++++|.++|++|. +.|+.|+..+|+.+++.|...
T Consensus 188 ~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999 679999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.4e-24 Score=225.79 Aligned_cols=368 Identities=14% Similarity=0.079 Sum_probs=277.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
|++++|.+.+..+.+.. +.++..+..+...+...|++++|...++... +.+..+|+.+...|.+.|++++|+..|+
T Consensus 13 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 67777877777777664 3445566666777777888888887776543 4456677778887777777777777766
Q ss_pred HHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCC
Q 048812 129 YLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLR 207 (645)
Q Consensus 129 ~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~ 207 (645)
++.. ....+..+|+.+..+|.+.|++++|++.|+++.+. .|+.. .+..+...+...|
T Consensus 92 ~al~--------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 92 HALR--------------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHH--------------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTS
T ss_pred HHHH--------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcc
Confidence 6532 01124456778888888888888888888887765 34433 5556666777778
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 208 DLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 208 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
++++|.+.+..+++.. +.+..+++.+...|.+.|++++|...|+++....| +...|..+...+...|++++|+..|++
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888877764 44567777788888888888888888877433344 456677777778888888888777766
Q ss_pred cccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHH
Q 048812 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366 (645)
Q Consensus 287 m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~ 366 (645)
....+ +.+..+|+.+...|.
T Consensus 229 al~~~------------------------------------------------------------p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 229 ALSLS------------------------------------------------------------PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHC------------------------------------------------------------TTCHHHHHHHHHHHH
T ss_pred HHhhC------------------------------------------------------------cCCHHHHHHHHHHHH
Confidence 54221 235677888899999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 445 (645)
..|++++|++.|+++.+. .| +..++..+..++...|++++|.+.|+++.+. .+++...+..+...+.+.|++++|
T Consensus 249 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999885 34 4678888889999999999999999998853 234678889999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 446 ANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 446 ~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..|..+..+|...|+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999886 4444 577889999999999999999999999999999998999988888877653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.3e-24 Score=226.09 Aligned_cols=354 Identities=15% Similarity=0.107 Sum_probs=301.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCC
Q 048812 79 VFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155 (645)
Q Consensus 79 ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~ 155 (645)
+...+.+.|++++|.+.|+++. +.+...+..+...+.+.|++++|...++.... ...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--------------------~~p 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--------------------QNP 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------HCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------cCC
Confidence 4566778999999999998764 33455677777777777777777666655431 123
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 234 (645)
.+..+|+.+...|.+.|++++|++.|+++.+. .|+ ..+|..+..++...|++++|.+.+..+++.. +.+...+..+
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 141 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL 141 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 46788999999999999999999999999875 454 4579999999999999999999999999875 4456678888
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhh
Q 048812 235 VDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313 (645)
Q Consensus 235 i~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a 313 (645)
...|...|++++|.+.|+++....| +..+|+.+...+.+.|++++|...|+++.+.+
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------- 199 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---------------------- 199 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------------------
Confidence 9999999999999999998544455 67899999999999999999999998876432
Q ss_pred hccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHH
Q 048812 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVT 392 (645)
Q Consensus 314 ~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t 392 (645)
+.+...|..+...+...|++++|+..|++.... .| +..+
T Consensus 200 --------------------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 200 --------------------------------------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp --------------------------------------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred --------------------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 234567888899999999999999999999875 45 4788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 048812 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACR 469 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~ 469 (645)
+..+..++...|++++|.+.|+++.+ +.|+ ...|..+...|.+.|++++|.+.++++ ..+++..+|..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 99999999999999999999999985 4564 788999999999999999999999987 23457889999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 470 CHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999976
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.3e-21 Score=207.43 Aligned_cols=306 Identities=10% Similarity=0.055 Sum_probs=243.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
+...|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56678888888888888888888888887652 3456778888888888888888888888888876 556778888888
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCC-h---hhHHHHHH------------HHHhcCCHHHHHHHHHhccc--C-CchhHHH
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVD-V---VLWTTLVS------------GYVKSNERDEARRLFDEMVE--R-NLISWTL 297 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~-~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~--~-~~~t~~~ 297 (645)
+|.+.|++++|.+.|+++....|+ . ..|..++. .+.+.|++++|+..|+++.+ | +...+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 888888888888888885444553 3 56665543 37888888888888888762 2 3445555
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcC---cCChhHHHHHHHHHHHcCCHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKA 374 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 374 (645)
+...|.+.| ++++|...|+.+. ..+..+|+.+...|...|++++|
T Consensus 183 l~~~~~~~g--------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 183 RAECFIKEG--------------------------------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHHHTT--------------------------------CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCC--------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 555555444 5566666666553 35788999999999999999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHH
Q 048812 375 IDLFLEMEETGTKPD-QVTFIAL------------LSACSHGGLVDEGYDFLSKKSRVYNIKPK-----MQHYGCMVDLL 436 (645)
Q Consensus 375 ~~l~~~m~~~g~~pd-~~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~ 436 (645)
+..|+++... .|+ ...+..+ ..+|.+.|++++|.++|+++.+ +.|+ ..+|..+..++
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHH
Confidence 9999999875 455 3444333 7889999999999999999986 3454 56899999999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 437 GRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..+..+
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999986 4344 688999999999999999999999999999999999999988843
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.9e-21 Score=205.34 Aligned_cols=166 Identities=12% Similarity=0.100 Sum_probs=145.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 431 (645)
.+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|..+++.+.+. .| +...+..
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 377 (514)
T 2gw1_A 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNF 377 (514)
T ss_dssp TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHH
Confidence 456788899999999999999999999998853 235678888999999999999999999999853 34 5678899
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 432 MVDLLGRAGHLEESANFITSM----PIPPD----VSIWSSLLRACRC---HQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m----~~~pd----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
+...|.+.|++++|.+.++++ +..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 457 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQ 457 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 999999999999999999886 22233 4489999999999 999999999999999999999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHhCC
Q 048812 501 IYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 501 ~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|...|++++|...+++..+.+
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999999999987643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=9.5e-21 Score=200.81 Aligned_cols=363 Identities=11% Similarity=0.012 Sum_probs=279.1
Q ss_pred CCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHH
Q 048812 70 MRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEV 146 (645)
Q Consensus 70 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A 146 (645)
+.++..+..+...|.+.|++++|..+|+++. +.+..+|..+...|...|++++|+..|+++...
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 89 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL------------- 89 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------
Confidence 4467788999999999999999999999865 456888999999999999888888888877531
Q ss_pred HHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh----hhHHHH------------HHHHhcCCChH
Q 048812 147 CQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE----VTMVSL------------ISARTKLRDLE 210 (645)
Q Consensus 147 ~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~ 210 (645)
...+..+|..+...|.+.|++++|++.|+++.+. .|+. ..+..+ ...+...|+++
T Consensus 90 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 90 -------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 1235678999999999999999999999999876 4443 445444 34488899999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcc-
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEID-EVDVVLWTTLVSGYVKSNERDEARRLFDEMV- 288 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 288 (645)
.|.+.+..+++.. +.+..++..+..+|.+.|++++|.+.|+++... ..+..+|..+...|...|++++|+..|+++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999876 567889999999999999999999999984333 3478899999999999999999999999987
Q ss_pred -cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHH
Q 048812 289 -ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAM 367 (645)
Q Consensus 289 -~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 367 (645)
.|+.......+... .....+..+...|..
T Consensus 240 ~~p~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQV--------------------------------------------------KKLNKLIESAEELIR 269 (450)
T ss_dssp HCTTCHHHHHHHHHH--------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHH--------------------------------------------------HHHHHHHHHHHHHHH
Confidence 33332211111000 011233455888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCC
Q 048812 368 AGHAQKAIDLFLEMEETGTKPD-----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 441 (645)
.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++++.+. .| +...|..+..+|...|+
T Consensus 270 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcC
Confidence 99999999999999884 455 347788888999999999999999998853 45 57899999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----ChHHHHHHHHH-HHhcCCCCch--------
Q 048812 442 LEESANFITSM-PIPPD-VSIWSSLLRA------------CRCHQ-----NVKLAEHAFKH-LTETDPLNDG-------- 493 (645)
Q Consensus 442 ~~~A~~~~~~m-~~~pd-~~~~~~ll~a------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~-------- 493 (645)
+++|.+.++++ ...|+ ..++..+..+ |...| +.+++.+.+++ .++..|++..
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a 424 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKA 424 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHH
Confidence 99999999987 55564 5566666533 33334 66778888887 6777776421
Q ss_pred --hHHHHHHHHHHcCCchH
Q 048812 494 --AHVLLANIYAKAGRLDD 510 (645)
Q Consensus 494 --~y~~l~~~~~~~g~~~~ 510 (645)
.+..+..+|...|+.+.
T Consensus 425 ~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 425 EKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHhCCHHH
Confidence 34455566665555543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-19 Score=195.92 Aligned_cols=383 Identities=10% Similarity=-0.016 Sum_probs=289.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHH
Q 048812 51 CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIY 127 (645)
Q Consensus 51 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 127 (645)
.+++++|...+..+++.. |++.++..+...|.+.|++++|...|+++. +.+..+|..+..+|.+.|++++|+..|
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 389999999999999986 689999999999999999999999999865 445678999999999999999999999
Q ss_pred HHHhhcCc--------hhh---ccCChH--------------------------------------HHHHHHccCCC---
Q 048812 128 LYLVTRTV--------LLN---KCGKLK--------------------------------------EVCQLFDKLPN--- 155 (645)
Q Consensus 128 ~~m~~~~~--------~~~---~~g~~~--------------------------------------~A~~~f~~m~~--- 155 (645)
+++...+. .+. +..... .+...+.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 99876430 000 000000 00111111100
Q ss_pred ------C-CcchHHHHHHHHHh---cCChHHHHHHHHHHhh-----CCCCC--------ChhhHHHHHHHHhcCCChHHH
Q 048812 156 ------R-DVISWNTMISCYTS---MGMYREGLGLLSKMGA-----EGVSP--------DEVTMVSLISARTKLRDLEMG 212 (645)
Q Consensus 156 ------~-~~~~~n~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~~~~~~~~~~~a 212 (645)
| +...|..+...+.. .|++++|+.+|+++.+ ..-.| +..++..+...+...|+++.|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 1 13334444444443 7888888888888876 31122 234566677778888888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 048812 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERN 291 (645)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 291 (645)
...+..+++.... ..++..+...|...|++++|...|+......| +..+|..+...|...|++++|...|++..+.+
T Consensus 257 ~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 257 HEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 8888888877533 77777888888888888888888877433333 66778888888888888888888887765332
Q ss_pred chhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCH
Q 048812 292 LISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHA 371 (645)
Q Consensus 292 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 371 (645)
..+...|..+...|...|++
T Consensus 335 ------------------------------------------------------------~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 335 ------------------------------------------------------------PENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp ------------------------------------------------------------SSCSHHHHHHHHHTTTTTCH
T ss_pred ------------------------------------------------------------hhhHHHHHHHHHHHHHcCCH
Confidence 23556788889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHH---cCCHHH
Q 048812 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCMVDLLGR---AGHLEE 444 (645)
Q Consensus 372 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~ 444 (645)
++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+...-.|+ ...+..+...|.+ .|++++
T Consensus 355 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 355 DDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 99999999998752 335678888899999999999999999998854333333 4488999999999 999999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 445 SANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 445 A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
|.+.++++ ... .+..+|..+...+...|++++|...++++++++|.++..+..+
T Consensus 434 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999886 233 3677899999999999999999999999999999987776655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=8.4e-20 Score=198.14 Aligned_cols=403 Identities=12% Similarity=0.071 Sum_probs=242.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC---CCCcccHHHHHHHHHHcCChhHHHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD---EPEIKIWNSIIENQLINGYPQEVFAIYL 128 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 128 (645)
+++++|...+..+++.. +.++.++..+...|.+.|++++|.+.|++.. +.+..+|..+...+...|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66667777777776665 3456666677777777777777777776653 3345566666666666666666666664
Q ss_pred HHhhcC-------chhhccCChHHHHHHHccCCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhh
Q 048812 129 YLVTRT-------VLLNKCGKLKEVCQLFDKLPN------RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT 195 (645)
Q Consensus 129 ~m~~~~-------~~~~~~g~~~~A~~~f~~m~~------~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 195 (645)
.+.... ..+...+....|...++.+.. +.....+..+..+....+.+.++..+...... .|....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 195 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYAL 195 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHH
Confidence 221110 122222333444444444322 11112222333333344443333333222211 111111
Q ss_pred HH-HHHHHHhcC--------CChHHHHHHHHHHHHhCCCCc-------hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC
Q 048812 196 MV-SLISARTKL--------RDLEMGKNLHLFLEESTMKIS-------GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV 259 (645)
Q Consensus 196 ~~-~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~~~-------~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~ 259 (645)
+. .+...+... ++++.|..++..+++.. +.+ ..++..+...|...|++++|...|+......|
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~ 274 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP 274 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 11 111111111 24444555555544432 111 11233344444555555555555554322333
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+..+|..+...+...|++++|.+.|+++.+.+
T Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------------------ 306 (537)
T 3fp2_A 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLN------------------------------------------------ 306 (537)
T ss_dssp CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC------------------------------------------------
T ss_pred CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC------------------------------------------------
Confidence 44445555555555555555555554433211
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
..+..+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|.++++++.+.
T Consensus 307 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 307 ------------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2456778889999999999999999999998753 224678888889999999999999999998853
Q ss_pred cCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHhc----------CChHHHHHH
Q 048812 420 YNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM----PIP----PDVSIWSSLLRACRCH----------QNVKLAEHA 480 (645)
Q Consensus 420 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~----pd~~~~~~ll~a~~~~----------g~~~~a~~~ 480 (645)
.| +...+..+...|.+.|++++|.+.++++ +.. .....+..+...+... |++++|...
T Consensus 374 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 374 ---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred ---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 34 4678888999999999999999999886 111 1223344555667777 999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 481 FKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 451 ~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999987644
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=4.2e-18 Score=174.00 Aligned_cols=299 Identities=11% Similarity=0.027 Sum_probs=242.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678888899999999999999999998763 3356788888889999999999999999999875 556788899999
Q ss_pred HHHHcCCHHHHHHHHcccCCCCC----ChhhHHHH------------HHHHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEV----DVVLWTTL------------VSGYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
.|.+.|++++|...|++.....| +...|..+ ...+...|++++|++.|+++.+.+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------- 150 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--------- 150 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------
Confidence 99999999999999998544455 34445544 567788888888888887765322
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 380 (645)
+.+...|..+...|...|++++|+..|++
T Consensus 151 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 151 ---------------------------------------------------VWDAELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp ---------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23556788888999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHH------------HHHHHHHHcCCHHHHHH
Q 048812 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYG------------CMVDLLGRAGHLEESAN 447 (645)
Q Consensus 381 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~ 447 (645)
..+. .+.+..++..+...+...|++++|.+.|+...+. .|+ ...+. .+...+.+.|++++|.+
T Consensus 180 ~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 255 (359)
T 3ieg_A 180 ASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 255 (359)
T ss_dssp HHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9875 2346788888999999999999999999998853 343 22222 33667899999999999
Q ss_pred HHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 448 FITSM-PIPPD-V----SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 448 ~~~~m-~~~pd-~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+++. ...|+ . ..+..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 256 KYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99886 33343 3 235567788999999999999999999999999999999999999999999999999998763
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=2.1e-18 Score=187.08 Aligned_cols=392 Identities=9% Similarity=-0.014 Sum_probs=294.3
Q ss_pred CCChhhHHHHHhhc----CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHH
Q 048812 38 CPVSLDVIMVERSC----SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113 (645)
Q Consensus 38 ~p~~~~~~~~l~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 113 (645)
.|+.......+..| +++++|.+.+..+++.. +.++..+..+...|...|++++|...|+.+. .+....+..+..
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 132 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEP 132 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------C
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHH
Confidence 45544433333333 99999999999999887 5578889999999999999999999997543 222233344556
Q ss_pred HHHcCChhHHHHHHHHHhhcC--------------chhhccCChHHHHHHHccCCCCCcc---hHHHHHHHHHhc-----
Q 048812 114 QLINGYPQEVFAIYLYLVTRT--------------VLLNKCGKLKEVCQLFDKLPNRDVI---SWNTMISCYTSM----- 171 (645)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~--------------~~~~~~g~~~~A~~~f~~m~~~~~~---~~n~li~~~~~~----- 171 (645)
+...+...+|+..++++.... ..|....+.+.+...+......+.. .+..+...+...
T Consensus 133 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (537)
T 3fp2_A 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhH
Confidence 667777889999999987642 3444566777777777777655443 344444333332
Q ss_pred ---CChHHHHHHHHHHhhCCCCCC--------hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q 048812 172 ---GMYREGLGLLSKMGAEGVSPD--------EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK 240 (645)
Q Consensus 172 ---g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 240 (645)
|++++|+.+|+++.+. .|+ ..++..+...+...|+++.|.+.+..+++.. |+..++..+...|..
T Consensus 213 ~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 4789999999999876 344 2246666677888999999999999999875 457888899999999
Q ss_pred cCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccc
Q 048812 241 CGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 241 ~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
.|++++|...|++.....| +..+|..+...+...|++++|...|++..+.+
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------- 340 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---------------------------- 340 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------
Confidence 9999999999998433334 67889999999999999999999998875422
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSA 399 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 399 (645)
..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 341 --------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 341 --------------------------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp --------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred --------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 2345678889999999999999999999998863 3346788888999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHHc----------CCHHHHHHHHHhC-CCC-CCHHHHHH
Q 048812 400 CSHGGLVDEGYDFLSKKSRVYNIKP----KMQHYGCMVDLLGRA----------GHLEESANFITSM-PIP-PDVSIWSS 463 (645)
Q Consensus 400 ~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~-pd~~~~~~ 463 (645)
+...|++++|.+.|+++.+...-.+ ....+..+...|.+. |++++|...+++. ... .+..+|..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999875322122 123355566778888 9999999999987 333 46788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
+...+...|++++|...+++++++.|.++....
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999998866544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=2.5e-17 Score=168.20 Aligned_cols=317 Identities=12% Similarity=0.054 Sum_probs=249.9
Q ss_pred cccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048812 104 IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSK 183 (645)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~ 183 (645)
+..|..+...+...|++++|+..|+++... ...+..+|..+...|...|++++|+..|++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------------------DPDNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 445677777787777777777777765421 123567888899999999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC---CchhHHHHH------------HHHHHHcCCHHHHH
Q 048812 184 MGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK---ISGSLLNYL------------VDMYFKCGKIGEAQ 248 (645)
Q Consensus 184 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------i~~y~~~g~~~~A~ 248 (645)
+.+.. +-+...+..+...+...|++++|.+.+..+.+.. + .+...+..+ ...|...|++++|.
T Consensus 63 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 63 VIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 88763 2255688888889999999999999999998764 3 345555544 58899999999999
Q ss_pred HHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHH
Q 048812 249 KLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVH 327 (645)
Q Consensus 249 ~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~ 327 (645)
+.|+++....| +...|..+...+...|++++|...|+++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------ 184 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK------------------------------------ 184 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------
Confidence 99998533344 67889999999999999999999998876433
Q ss_pred HHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH------------
Q 048812 328 VYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFI------------ 394 (645)
Q Consensus 328 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~------------ 394 (645)
+.+..+|..+...|...|++++|+..|++..+. .|+ ..++.
T Consensus 185 ------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 185 ------------------------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp ------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHH
Confidence 235677888999999999999999999999875 333 33332
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM--QHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRC 470 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~ 470 (645)
.+...+...|++++|...++++.+...-.|.. ..+..+...+...|++++|.+.+++. ...| +..+|..+...+..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 23566889999999999999998643221111 34566889999999999999999987 3334 78899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 471 HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 471 ~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
.|++++|...++++++++|+++..+..|..++..
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999998888887777654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=5.9e-17 Score=163.53 Aligned_cols=290 Identities=10% Similarity=0.011 Sum_probs=242.1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLV 235 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 235 (645)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..++..+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 567778889999999999999999999998763 3345567778888899999999999999999875 55778899999
Q ss_pred HHHHHcC-CHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhh
Q 048812 236 DMYFKCG-KIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKS 313 (645)
Q Consensus 236 ~~y~~~g-~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a 313 (645)
..|...| ++++|...|++.....| +...|..+...+...|++++|++.|+++.+.+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------- 155 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---------------------- 155 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----------------------
Confidence 9999999 99999999998544444 67889999999999999999999998775322
Q ss_pred hccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048812 314 CASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF 393 (645)
Q Consensus 314 ~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 393 (645)
+.+...|..+...|...|++++|+..|++..+.. +.+..++
T Consensus 156 --------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~ 196 (330)
T 3hym_B 156 --------------------------------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVM 196 (330)
T ss_dssp --------------------------------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHH
T ss_pred --------------------------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHH
Confidence 1244567778889999999999999999998752 3457888
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHH
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYN-------IKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSL 464 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~l 464 (645)
..+...+...|++++|..+++++.+... .......+..+...|.+.|++++|.+.+++. ... .+..+|..+
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 276 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHH
Confidence 8999999999999999999999885321 1334678999999999999999999999886 223 367789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHcCCc
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY-AKAGRL 508 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~-~~~g~~ 508 (645)
...+...|++++|...++++++++|+++..+..+..++ ...|+.
T Consensus 277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 277 GYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999999999999999999988 455554
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=5e-19 Score=179.67 Aligned_cols=283 Identities=12% Similarity=0.134 Sum_probs=134.0
Q ss_pred hccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 048812 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217 (645)
Q Consensus 138 ~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (645)
.++|++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46799999999999997765 9999999999999999999999753 577899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHH
Q 048812 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297 (645)
Q Consensus 218 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ 297 (645)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT----------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------
Confidence 77774 55688899999999999999999988864 67779999999999999999999999865
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
..|..++.++.+.|++++|++.
T Consensus 149 ----------------------------------------------------------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 149 ----------------------------------------------------------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred ----------------------------------------------------------hhHHHHHHHHHHhccHHHHHHH
Confidence 1378888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 048812 378 FLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP 456 (645)
Q Consensus 378 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 456 (645)
++++ .+..||..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++.. +..+
T Consensus 171 ~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ 238 (449)
T 1b89_A 171 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLER 238 (449)
T ss_dssp HHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT
T ss_pred HHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH
Confidence 9888 2788999999999999999999554332 3344555667889999999999999888875 5443
Q ss_pred -CHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 457 -DVSIWSSLLRACRCH--QNVKLAEHAFKHLTETDP-----LNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 457 -d~~~~~~ll~a~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
...+|.-|.-++++. +++.+.+++|..-+.+.| .++..|.-++..|...++|+.|....
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 456777776666665 456666666665555666 67788889999999999999888743
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.9e-17 Score=167.84 Aligned_cols=297 Identities=12% Similarity=-0.004 Sum_probs=200.1
Q ss_pred cCChHHHHH-HHHHHhhCCC-CC--ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH
Q 048812 171 MGMYREGLG-LLSKMGAEGV-SP--DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246 (645)
Q Consensus 171 ~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 246 (645)
.|++++|++ .|++...... .| +...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666666 5554443211 01 23445556666666666666666666666554 4455666666777777777777
Q ss_pred HHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHH
Q 048812 247 AQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325 (645)
Q Consensus 247 A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~ 325 (645)
|...|++.....| +..+|..+...|...|++++|++.|+++...+..... .....+..
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~~~----- 175 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH----------------LVTPAEEG----- 175 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG----------------GCC----------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH----------------HHHHHHHH-----
Confidence 7777765322233 5667777777777777777777777776532211000 00000000
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 048812 326 VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGG 404 (645)
Q Consensus 326 i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g 404 (645)
.. . ......+..+...+ ..|++++|+..|+++.+..... +..++..+...+...|
T Consensus 176 ---------------~~-------~-~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 176 ---------------AG-------G-AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp ---------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred ---------------hh-------h-hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 00 0 00011122233333 8899999999999998853221 4788999999999999
Q ss_pred cHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 048812 405 LVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAF 481 (645)
Q Consensus 405 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~ 481 (645)
++++|...|+++.+. .| +...|..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+
T Consensus 232 ~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 232 EYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998853 45 4788999999999999999999999986 3334 6789999999999999999999999
Q ss_pred HHHHhcCCCC-----------chhHHHHHHHHHHcCCchHHHHHHH
Q 048812 482 KHLTETDPLN-----------DGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 482 ~~~~~~~p~~-----------~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
++++++.|.+ +.+|..++.+|...|++++|..+++
T Consensus 309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999988877 7889999999999999999999875
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.3e-16 Score=161.07 Aligned_cols=267 Identities=13% Similarity=0.098 Sum_probs=226.5
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHH
Q 048812 189 VSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTL 267 (645)
Q Consensus 189 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~l 267 (645)
.+.+...+..+...+...|++++|.+++..+.+.. +.+...+..++..+.+.|++++|...|+++....| +...|..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 35566778888888888999999999999999876 55666777788889999999999999988544444 67889999
Q ss_pred HHHHHhcC-CHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHH
Q 048812 268 VSGYVKSN-ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDL 346 (645)
Q Consensus 268 i~~~~~~g-~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~ 346 (645)
...+...| ++++|.+.|++..+.+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~------------------------------------------------------- 121 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE------------------------------------------------------- 121 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-------------------------------------------------------
Confidence 99999999 9999999998876433
Q ss_pred HhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-C
Q 048812 347 FSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-K 425 (645)
Q Consensus 347 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~ 425 (645)
+.+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|.++++++.+ +.| +
T Consensus 122 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~ 192 (330)
T 3hym_B 122 -----KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS---IAPED 192 (330)
T ss_dssp -----TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTC
T ss_pred -----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCCCC
Confidence 2356678899999999999999999999999863 23456777788999999999999999999884 345 4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-P----------IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~----------~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
...+..+...|.+.|++++|.+.+++. . .+.+..+|..+...+...|++++|...++++++..|.++..
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 272 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHH
Confidence 788999999999999999999999876 1 13346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+..++.+|...|++++|.+.+++..+
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999987754
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.2e-17 Score=167.70 Aligned_cols=321 Identities=17% Similarity=0.169 Sum_probs=128.8
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHH
Q 048812 85 FTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTM 164 (645)
Q Consensus 85 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~l 164 (645)
+.|++++|.+.++++.+|+ +|..++.++.+.|++++|++.|.+ . +|...|..+
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-----------------------a--~D~~~y~~V 67 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-----------------------A--DDPSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-----------------------C--CCHHHHHHH
Confidence 5677778888887776554 677777777665555444444432 1 355566666
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
+.++.+.|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.+++. .|+..+|+.+.+.|...|.+
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT-------CC----------------CT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCH
Confidence 66666666666666655544443 3445566666666666666666665552 24555666666666666777
Q ss_pred HHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHH
Q 048812 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGI 324 (645)
Q Consensus 245 ~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~ 324 (645)
++|...|.. . ..|..|+.++.+.|++++|.+.++++ .++.+|..++.+++..|
T Consensus 139 eeA~~~Y~~--a-----~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~------------------ 191 (449)
T 1b89_A 139 DAAKLLYNN--V-----SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGK------------------ 191 (449)
T ss_dssp TTHHHHHHH--T-----TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHH--h-----hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcC------------------
Confidence 777666666 2 35666666777777777776666666 25566666664444333
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhc
Q 048812 325 WVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF--IALLSACSH 402 (645)
Q Consensus 325 ~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~ 402 (645)
+++.|......+. ........++..|.+.|++++|+.+++...... +-....| ..++.+-.+
T Consensus 192 --------------ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 192 --------------EFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 255 (449)
T ss_dssp --------------CHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred --------------cHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC
Confidence 3333433333222 222334468899999999999999999987543 2234444 444555555
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKP------KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKL 476 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~ 476 (645)
.+++.+..+.|.. .-++.| +..+|..++-.|...++++.|...+-+-+ |+..--........+..+.|.
T Consensus 256 p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~el 330 (449)
T 1b89_A 256 PQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVEL 330 (449)
T ss_dssp HHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHH
Confidence 6677777776653 334555 46789999999999999999988766553 232222333344455566555
Q ss_pred HHHHHHHHHhcCC
Q 048812 477 AEHAFKHLTETDP 489 (645)
Q Consensus 477 a~~~~~~~~~~~p 489 (645)
--++..--++..|
T Consensus 331 yYkai~fyl~~~p 343 (449)
T 1b89_A 331 YYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHHHHHCG
T ss_pred HHHHHHHHHhcCH
Confidence 5555544444444
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=5.3e-15 Score=160.18 Aligned_cols=175 Identities=7% Similarity=0.018 Sum_probs=140.1
Q ss_pred HHHHHHhhcCc----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHH
Q 048812 342 LAYDLFSEISE----KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQ--VTFIALLSACSHGGLVDEGYDFLSK 415 (645)
Q Consensus 342 ~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~ 415 (645)
+|..+|++... .+...|..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66666665442 35788999999999999999999999999984 5652 4788888888899999999999999
Q ss_pred hHHhcCCCCC-hHHHHHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 416 KSRVYNIKPK-MQHYGCMVDL-LGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 416 ~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..+. .|. ...|.....+ +...|+.++|.++|++. ...| +...|..++..+...|+.++|..+|++++...|.+
T Consensus 382 Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 382 ARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 8853 343 3333333222 34689999999999976 3334 67899999999999999999999999999988766
Q ss_pred ch----hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 492 DG----AHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 492 ~~----~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+. .|...+......|+.+.+..+.+++.+.
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55 7777788888999999999999988663
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=4.5e-14 Score=159.07 Aligned_cols=404 Identities=14% Similarity=0.157 Sum_probs=284.5
Q ss_pred cCCChhhHHHHHh-hcCCHHHHHHHHHHHHHhC--CCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHH
Q 048812 37 VCPVSLDVIMVER-SCSSIDEFERIHSHLITTN--LMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIEN 113 (645)
Q Consensus 37 ~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 113 (645)
..|+..++..-.- ..+.+.++..+++.++-.+ +.-+....+.|+....+. +..+.....++...-+ ...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 4566665533222 2388999999999888332 123456777777777776 4555555555544333 5567888
Q ss_pred HHHcCChhHHHHHHHHHhhcC----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 048812 114 QLINGYPQEVFAIYLYLVTRT----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGV 189 (645)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~ 189 (645)
+...|.+++|.++|++....+ .++...+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+.
T Consensus 1059 ai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 899999999999999986433 34558899999999998874 4677999999999999999999999664
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 190 SPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 190 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
-|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++..... ..++...|..+..
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-----~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-----NGPNNAHIQQVGD 1203 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-----hCCCHHHHHHHHH
Confidence 367789999999999999999999999888764 45555566999999999999655543 3456778888999
Q ss_pred HHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhh
Q 048812 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349 (645)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~ 349 (645)
.|...|++++|..+|... ..|..+...|++.| +++.|.+.+.+
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLg--------------------------------e~q~AIEaarK 1246 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG--------------------------------EYQAAVDGARK 1246 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhC--------------------------------CHHHHHHHHHH
Confidence 999999999999999985 36777777777766 67777777776
Q ss_pred cCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHH
Q 048812 350 ISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQH 428 (645)
Q Consensus 350 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 428 (645)
. .+..+|..+-.+|...|++..|...... +..+...+..++..|...|.+++|+.+++... ++.| ....
T Consensus 1247 A--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gm 1316 (1630)
T 1xi4_A 1247 A--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGM 1316 (1630)
T ss_pred h--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHH
Confidence 5 4567777777777777777777665543 22345555677777777778887777776554 3443 2445
Q ss_pred HHHHHHHHHHc--CCHHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh------------c
Q 048812 429 YGCMVDLLGRA--GHLEESANFITS-MPIPP------DVSIWSSLLRACRCHQNVKLAEHAFKHLTE------------T 487 (645)
Q Consensus 429 ~~~li~~~~~~--g~~~~A~~~~~~-m~~~p------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~------------~ 487 (645)
|+-|..+|++. +++.++.++|.+ +.++| +...|.-+.--|.+.|+++.|....-+-.. .
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 55555555543 455555555544 33333 455677777777777777777622211111 1
Q ss_pred CCCCchhHHHHHHHHHHcC
Q 048812 488 DPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 488 ~p~~~~~y~~l~~~~~~~g 506 (645)
.+.++..|.-.++.|...+
T Consensus 1397 kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1397 KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccccHHHHHHHHHHHHhhC
Confidence 3556666666666666555
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=2.4e-14 Score=153.45 Aligned_cols=368 Identities=13% Similarity=0.020 Sum_probs=267.9
Q ss_pred ChhhhhhHHHHHHh----cCChHHHHHHHhhCC-CCCcccHHHHHHHHHH----cCChhHHHHHHHHHhhcCchhhccCC
Q 048812 72 DPQISTQVFEFLVF----TGDLGYAQQIIRQGD-EPEIKIWNSIIENQLI----NGYPQEVFAIYLYLVTRTVLLNKCGK 142 (645)
Q Consensus 72 ~~~~~~~ll~~~~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~g~ 142 (645)
++.....|-..|.. .++++.|...|++.. ..+..++..+...|.. .+++++|+..|++...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------- 107 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL---------- 107 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------
Confidence 67777778888887 899999999998754 3466778888888877 6777777777766532
Q ss_pred hHHHHHHHccCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc----CCChHHHHH
Q 048812 143 LKEVCQLFDKLPNRDVISWNTMISCYTS----MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK----LRDLEMGKN 214 (645)
Q Consensus 143 ~~~A~~~f~~m~~~~~~~~n~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~ 214 (645)
..+..++..|...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.+
T Consensus 108 ------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 108 ------------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp ------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 1245566667777777 678888888888887765 45556666666655 678888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHH----cCCHHHHHHHHcccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHh
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFK----CGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVK----SNERDEARRLFDE 286 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 286 (645)
.+....+.| +...+..|..+|.. .++.++|.+.|++.. ...+..++..+...|.. .+++++|.++|++
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSA-TSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 888887765 56677777788877 788888888887631 12356677777777776 7788888888888
Q ss_pred cccCCchh-HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcC-CCCCcHHHHHHHHhhcCc-CChhHHHHHHH
Q 048812 287 MVERNLIS-WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQ-ISIDNIELAYDLFSEISE-KNVYLWTSVIA 363 (645)
Q Consensus 287 m~~~~~~t-~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~-~~~~~~~~A~~~f~~~~~-~~~~~~~~li~ 363 (645)
..+.+... +..+- .+...| ....+.++|...|+...+ .+...+..+..
T Consensus 249 a~~~~~~~a~~~lg-----------------------------~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 299 (490)
T 2xm6_A 249 SAEQGNSIAQFRLG-----------------------------YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAH 299 (490)
T ss_dssp HHTTTCHHHHHHHH-----------------------------HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHH-----------------------------HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76544321 11111 111111 123467788888876654 45677788888
Q ss_pred HHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 364 AYAMA-----GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG---LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 364 ~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
.|... +++++|+..|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|..+
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNA 372 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHH
Confidence 88887 89999999999998865 4456666666676656 889999999998852 467888899999
Q ss_pred HHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHH
Q 048812 436 LGR----AGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPL---NDGAHVLLANIYAK 504 (645)
Q Consensus 436 ~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~---~~~~y~~l~~~~~~ 504 (645)
|.. .+++++|.+.+++.-...+...+..|...|.. .+|.++|...|+++.+.+|+ ++.....|..++..
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 998 89999999999987333467888889888888 89999999999999999854 55555555555443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=5.6e-16 Score=159.13 Aligned_cols=284 Identities=13% Similarity=0.025 Sum_probs=219.1
Q ss_pred ccCChHHHHH-HHccCCC-------CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChH
Q 048812 139 KCGKLKEVCQ-LFDKLPN-------RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLE 210 (645)
Q Consensus 139 ~~g~~~~A~~-~f~~m~~-------~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 210 (645)
-.|++++|.. .|++... .+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 4466777776 6664432 246779999999999999999999999999874 346678889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC-hhhHHH---------------HHHHHHhc
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD-VVLWTT---------------LVSGYVKS 274 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~~~~~---------------li~~~~~~ 274 (645)
.|...+..+++.. +.+..++..+...|...|++++|.+.|+++....|+ ...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 9999999999886 567889999999999999999999999985433442 222221 12333366
Q ss_pred CCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCC
Q 048812 275 NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKN 354 (645)
Q Consensus 275 g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~ 354 (645)
|++++|+..|+++.+.+.. .++
T Consensus 195 ~~~~~A~~~~~~a~~~~p~----------------------------------------------------------~~~ 216 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPT----------------------------------------------------------SID 216 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTT----------------------------------------------------------SCC
T ss_pred ccHHHHHHHHHHHHHhCcC----------------------------------------------------------ccc
Confidence 7777777777665432110 115
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMV 433 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 433 (645)
..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++|.+.|+++.+. .| +...+..+.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~ 292 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHH
Confidence 6788899999999999999999999998862 335788999999999999999999999998853 45 478899999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP------------DVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p------------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
.+|.+.|++++|.+.+++. ...| ...+|..+..++...|+.++|..++++.++
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 9999999999999999886 1112 268999999999999999999999886654
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.6e-16 Score=163.20 Aligned_cols=270 Identities=13% Similarity=0.025 Sum_probs=194.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHH
Q 048812 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYV 272 (645)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~ 272 (645)
..+..+...+...|++++|.+.+..+++.. +.+..++..+..+|.+.|++++|...|++.....| +..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666666666666666666666654 44566677777777777777777777776433333 5677888888888
Q ss_pred hcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc
Q 048812 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352 (645)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~ 352 (645)
..|++++|+..|+++.+.+........ .. .
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~~----------------------------------~ 174 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVK----------------NK----------------------------------K 174 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------------------------------
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHh----------------hh----------------------------------c
Confidence 888888888888777632211000000 00 0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
.....++.+...|...|++++|+..|+++.+.... ++..++..+...+...|++++|.++|+++.+. .| +...|.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 251 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWN 251 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 12334566788889999999999999999986322 25888999999999999999999999998853 44 578999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------------CchhHH
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL------------NDGAHV 496 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------------~~~~y~ 496 (645)
.+..+|.+.|++++|.+.+++. ...| +..+|..+..+|...|++++|...+++++++.|. +...+.
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 9999999999999999999987 3344 5789999999999999999999999999998776 357888
Q ss_pred HHHHHHHHcCCchHHHHHHHH
Q 048812 497 LLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~ 517 (645)
.|..++...|+.+.+.++.++
T Consensus 332 ~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 332 ALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999988887653
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=2.8e-15 Score=148.54 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH---HHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQH---YGCMVD 434 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~ 434 (645)
+..+...|...|++++|++.|++ +.+...+..+...+...|++++|.+.|+.+.+. .|+... ..+++.
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~ 174 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVS 174 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHH
Confidence 33444445555555555555544 233444444444555555555555555554432 233211 111222
Q ss_pred HHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH-H
Q 048812 435 LLGRAGHLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD-M 511 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~-a 511 (645)
.+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++++|+++.++..++.++...|++++ +
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 222335555555555554 1223455555555555566666666666666666666655555556555555665544 3
Q ss_pred HHHHHHHHh
Q 048812 512 SRIRMKLRD 520 (645)
Q Consensus 512 ~~~~~~m~~ 520 (645)
.++++++.+
T Consensus 255 ~~~~~~~~~ 263 (291)
T 3mkr_A 255 NRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555543
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=7.3e-15 Score=156.50 Aligned_cols=385 Identities=10% Similarity=-0.053 Sum_probs=220.6
Q ss_pred CChhhhhhHHHHHHhcCChHHHHHHHhhCC------------CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhh
Q 048812 71 RDPQISTQVFEFLVFTGDLGYAQQIIRQGD------------EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLN 138 (645)
Q Consensus 71 ~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 138 (645)
....+||.|-..|...|++++|++.|++.. ....++|+.+...|...|++++|+..|++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~------- 121 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK------- 121 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-------
Confidence 345678999999999999999999987642 2235689999999999999999999887754
Q ss_pred ccCChHHHHHHHccCCC---C-CcchHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHH---HhcCCC
Q 048812 139 KCGKLKEVCQLFDKLPN---R-DVISWNTMISCYTS--MGMYREGLGLLSKMGAEGVSPDE-VTMVSLISA---RTKLRD 208 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~---~-~~~~~n~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~ 208 (645)
++...... + ...+|+.+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++
T Consensus 122 ---------~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 122 ---------HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp ---------HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCC
T ss_pred ---------HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchH
Confidence 33333322 1 23456555555554 45789999999998875 4543 344444333 445677
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 048812 209 LEMGKNLHLFLEESTMKISGSLLNYLVDMYFK----CGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRL 283 (645)
Q Consensus 209 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 283 (645)
.++|.+.+..+++.. +.+..++..+...+.. .|+.++|.+.+++.....| +..+|..+...|...|++++|+..
T Consensus 191 ~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp CCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 888888898888876 4456666666555554 4567889998886333333 677899999999999999999999
Q ss_pred HHhcc--cCCch-hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHH
Q 048812 284 FDEMV--ERNLI-SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTS 360 (645)
Q Consensus 284 ~~~m~--~~~~~-t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~ 360 (645)
|++.. .|+.. .+..+-..|...+ .. .. ...+..
T Consensus 270 ~~~al~~~p~~~~~~~~lg~~y~~~~-----------------~~--------------------~~-------~~~~~~ 305 (472)
T 4g1t_A 270 LKKALEYIPNNAYLHCQIGCCYRAKV-----------------FQ--------------------VM-------NLRENG 305 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHH-----------------HH--------------------HH-------HC----
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHH-----------------HH--------------------hh-------hHHHHH
Confidence 99887 34322 1211111111000 00 00 000000
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHH-H
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ----HYGCMVD-L 435 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~ 435 (645)
........+..++|+..|++..+.. +.+..++..+...+...|++++|.+.|++..+ +.|+.. .+..+.. .
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHH
Confidence 0001111223455666666655432 12234455556666666666666666666553 223221 1222222 2
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 048812 436 LGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 514 (645)
+...|++++|.+.+++. .+.|+...+.. ..+.+..++++.++.+|.++.+|..|+.+|...|++++|.+.
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23456777777766654 45555433322 234456777888889999999999999999999999999999
Q ss_pred HHHHHhCCCcccCceeE
Q 048812 515 RMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 515 ~~~m~~~~~~~~~~~s~ 531 (645)
+++..+.+-..+...+|
T Consensus 453 y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 453 SERGLESGSLIPSASSW 469 (472)
T ss_dssp -----------------
T ss_pred HHHHHhcCCCCCcHhhc
Confidence 99888776444444445
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=4.7e-16 Score=159.77 Aligned_cols=234 Identities=11% Similarity=0.058 Sum_probs=190.2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhcc
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQ 305 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~ 305 (645)
+...+..+...|.+.|++++|...|+++....| +..+|..+...|.+.|++++|+..|+++.+.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------------- 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 344577788889999999999999988543344 67889999999999999999999988765322
Q ss_pred CCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 306 ~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
+.+..+|..+...|...|++++|+..|+++.+.
T Consensus 130 ----------------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 162 (365)
T 4eqf_A 130 ----------------------------------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ- 162 (365)
T ss_dssp ----------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ----------------------------------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh-
Confidence 235678999999999999999999999999874
Q ss_pred CCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 048812 386 TKPDQ-----------VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P 453 (645)
Q Consensus 386 ~~pd~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 453 (645)
.|+. ..+..+...+...|++++|.++|+++.+...-.++...+..+...|.+.|++++|.+.+++. .
T Consensus 163 -~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 163 -NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241 (365)
T ss_dssp -CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3332 23344577889999999999999999965333335889999999999999999999999987 3
Q ss_pred CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 454 IP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 454 ~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.. .+..+|..+..+|...|++++|+..+++++++.|+++.++..++.+|...|++++|...++++.+..
T Consensus 242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 4688999999999999999999999999999999999999999999999999999999999987643
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=2.5e-13 Score=145.47 Aligned_cols=356 Identities=12% Similarity=0.020 Sum_probs=278.9
Q ss_pred CCCcccHHHHHHHHHH----cCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHh----cC
Q 048812 101 EPEIKIWNSIIENQLI----NGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTS----MG 172 (645)
Q Consensus 101 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~----~g 172 (645)
..+..++..+...|.. .+++++|+..|++... ..+..++..|...|.. .+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----------------------~~~~~a~~~Lg~~y~~g~g~~~ 93 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----------------------QGYTPAEYVLGLRYMNGEGVPQ 93 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------------TTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----------------------CCCHHHHHHHHHHHHcCCCCCC
Confidence 3456667777777766 5666666666655421 1356678888888988 89
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCCH
Q 048812 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTK----LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFK----CGKI 244 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~ 244 (645)
++++|++.|++..+.| +...+..+-..+.. .+++++|.+.+....+.| +...+..|..+|.. .++.
T Consensus 94 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 94 DYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999998876 55667777777776 789999999999999876 56678888899988 7899
Q ss_pred HHHHHHHcccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcccCCch-hHHHHHHhhhccCCchhhhhhccccc
Q 048812 245 GEAQKLLGRYEIDEVDVVLWTTLVSGYVK----SNERDEARRLFDEMVERNLI-SWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 245 ~~A~~~~~~m~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
++|.+.|++... ..+..++..+...|.. .++.++|.+.|++..+.+.. .+..+-..|.
T Consensus 168 ~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~---------------- 230 (490)
T 2xm6_A 168 VMAREWYSKAAE-QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYY---------------- 230 (490)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------
Confidence 999999987322 2478889999999998 89999999999998765432 2222221111
Q ss_pred hhhHHHHHHHHHHcCC-CCCcHHHHHHHHhhcCc-CChhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 048812 320 LYHGIWVHVYIKKNQI-SIDNIELAYDLFSEISE-KNVYLWTSVIAAYAM----AGHAQKAIDLFLEMEETGTKPDQVTF 393 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~-~~~~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~ 393 (645)
.+. ...+.++|...|+...+ .+...+..+...|.. .++.++|+.+|++..+.| +...+
T Consensus 231 -------------~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~ 294 (490)
T 2xm6_A 231 -------------FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ 294 (490)
T ss_dssp -------------HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred -------------cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence 111 23478899999887654 566778888888888 899999999999998764 45566
Q ss_pred HHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcC---CHHHHHHHHHhCCCCCCHHHHHHHH
Q 048812 394 IALLSACSHG-----GLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAG---HLEESANFITSMPIPPDVSIWSSLL 465 (645)
Q Consensus 394 ~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~pd~~~~~~ll 465 (645)
..+...+... ++.++|..+|++..+ . .+...+..|..+|.+.| ++++|.+++++.-...++..+..|.
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg 370 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLG 370 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6677777766 899999999999885 2 35567788888888867 8899999999873336788999999
Q ss_pred HHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 048812 466 RACRC----HQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK----AGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 466 ~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 523 (645)
..|.. .++.++|...++++.+.+ ++..+..|..+|.. .+++++|...+++..+.+.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99988 899999999999999865 46889999999998 8999999999999988763
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=4.2e-15 Score=149.64 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=128.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHH
Q 048812 365 YAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 365 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 443 (645)
+...|++++|+..++++.+.. +.+..++..+...+...|++++|.++++++.+. .| +...+..+...|.+.|+++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHH
Confidence 667788999999999988763 336788888888999999999999999988853 34 4778899999999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------------CchhHHHHHHHHHHcCCch
Q 048812 444 ESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL------------NDGAHVLLANIYAKAGRLD 509 (645)
Q Consensus 444 ~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------------~~~~y~~l~~~~~~~g~~~ 509 (645)
+|.+.++++ ... .+..+|..+...+...|++++|...++++++..|. ++..+..++.+|...|+++
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 999999886 333 36788999999999999999999999999999998 6788999999999999999
Q ss_pred HHHHHHHHH
Q 048812 510 DMSRIRMKL 518 (645)
Q Consensus 510 ~a~~~~~~m 518 (645)
+|..++++.
T Consensus 304 ~A~~~~~~~ 312 (327)
T 3cv0_A 304 LVELTYAQN 312 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHH
Confidence 999987643
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=176.42 Aligned_cols=135 Identities=12% Similarity=0.132 Sum_probs=116.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcH
Q 048812 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI 340 (645)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~ 340 (645)
..|||+||++|++.|+.++|.++|++|.+...
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~------------------------------------------------ 158 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ------------------------------------------------ 158 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 46899999999999999999999988753210
Q ss_pred HHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHh
Q 048812 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL-VDEGYDFLSKKSRV 419 (645)
Q Consensus 341 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~ 419 (645)
....||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||+++|.++++.|+ .++|.++|++|. +
T Consensus 159 --------kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~-~ 229 (1134)
T 3spa_A 159 --------KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-Q 229 (1134)
T ss_dssp --------HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-H
T ss_pred --------cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-H
Confidence 001589999999999999999999999999999999999999999999999999997 578999999999 6
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
.|+.||..+|++++....+.+-++.+.++...+
T Consensus 230 kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 799999999999999888887666666664444
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=3.1e-13 Score=152.36 Aligned_cols=387 Identities=12% Similarity=0.077 Sum_probs=262.3
Q ss_pred HHHHHHHHhCC--CCChhhhhhHHHHHHhcCChHHHHHHHhhCC-CCC-----cccHHHHHHHHHHcCChhHHHHHHHHH
Q 048812 59 RIHSHLITTNL--MRDPQISTQVFEFLVFTGDLGYAQQIIRQGD-EPE-----IKIWNSIIENQLINGYPQEVFAIYLYL 130 (645)
Q Consensus 59 ~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 130 (645)
++.++.+...+ ..++.-....+..|+..|.+.+|..+++++. .|+ ...-|.++.+.++. +.....++..+.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL 1047 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL 1047 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh
Confidence 44444444333 2344455667788888888888888888765 222 24455666666665 445555555554
Q ss_pred hhcC-----chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhc
Q 048812 131 VTRT-----VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTK 205 (645)
Q Consensus 131 ~~~~-----~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 205 (645)
...+ ..+...|.+++|..+|++.. ....+.+.++. ..+++++|.++.++.. +..+|..+..++..
T Consensus 1048 d~~d~~eIA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1048 DNYDAPDIANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred hhccHHHHHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHh
Confidence 3222 55566777777777777764 22222333332 5567777777776542 35667777777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048812 206 LRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFD 285 (645)
Q Consensus 206 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 285 (645)
.|++++|...|... .|...|..++..+.+.|++++|.+.|.......++....+.++.+|++.+++++.....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 77777777776442 45556666777777777777777777653333344334445777777777777533332
Q ss_pred hcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHH
Q 048812 286 EMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY 365 (645)
Q Consensus 286 ~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~ 365 (645)
..++...|..+-. .....+.+++|...|... ..|..+...|
T Consensus 1191 --~~~n~ad~~~iGd--------------------------------~le~eg~YeeA~~~Y~kA-----~ny~rLA~tL 1231 (1630)
T 1xi4_A 1191 --NGPNNAHIQQVGD--------------------------------RCYDEKMYDAAKLLYNNV-----SNFGRLASTL 1231 (1630)
T ss_pred --hCCCHHHHHHHHH--------------------------------HHHhcCCHHHHHHHHHhh-----hHHHHHHHHH
Confidence 2333333332222 223334889999999875 4899999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHH
Q 048812 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 445 (645)
.+.|++++|++.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|
T Consensus 1232 vkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEA 1299 (1630)
T 1xi4_A 1232 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEEL 1299 (1630)
T ss_pred HHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999876 3678999999999999999999876543 445677888999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCC-----CCchhHHHHHHHHHHcCCchHHHHH
Q 048812 446 ANFITSM-PIPP-DVSIWSSLLRACRC--HQNVKLAEHAFKHLTETDP-----LNDGAHVLLANIYAKAGRLDDMSRI 514 (645)
Q Consensus 446 ~~~~~~m-~~~p-d~~~~~~ll~a~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~y~~l~~~~~~~g~~~~a~~~ 514 (645)
..+++.. +..| ....|.-|...+.+ -+++.++.++|..-..+.| .+...|.-++..|.+.|+|+.|...
T Consensus 1300 I~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1300 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999775 5544 33466555555555 4577778888887776666 5677888999999999999999854
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=5.5e-13 Score=144.30 Aligned_cols=381 Identities=9% Similarity=0.062 Sum_probs=248.1
Q ss_pred hHHHHHhh--cCCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCC--CCCcccHHHHHHHH-HHc
Q 048812 43 DVIMVERS--CSSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGD--EPEIKIWNSIIENQ-LIN 117 (645)
Q Consensus 43 ~~~~~l~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~-~~~ 117 (645)
.+..++.. .++++.++.+++.+++.- |.+...|..++..+.+.|++++|+.+|++.. .|++..|...+... ...
T Consensus 15 ~w~~l~~~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~ 93 (530)
T 2ooe_A 15 AWSILIREAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETK 93 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Confidence 34444443 378999999999998764 5577889999999999999999999999875 46777788777533 345
Q ss_pred CChhHHHH----HHHHHhhc------C--------chh---------hccCChHHHHHHHccCCC-CCc---chHHHHHH
Q 048812 118 GYPQEVFA----IYLYLVTR------T--------VLL---------NKCGKLKEVCQLFDKLPN-RDV---ISWNTMIS 166 (645)
Q Consensus 118 g~~~~A~~----~~~~m~~~------~--------~~~---------~~~g~~~~A~~~f~~m~~-~~~---~~~n~li~ 166 (645)
|+.++|.+ +|++.... + .+. .+.|+++.|+.+|++..+ |+. ..|.....
T Consensus 94 ~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~ 173 (530)
T 2ooe_A 94 GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173 (530)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Confidence 77776665 66555431 0 111 124667777777766543 221 22332221
Q ss_pred HH-------------HhcCChHHHHHHHHHH------hhCC---CCCCh--------hhHHHHHHHHhc----CCCh---
Q 048812 167 CY-------------TSMGMYREGLGLLSKM------GAEG---VSPDE--------VTMVSLISARTK----LRDL--- 209 (645)
Q Consensus 167 ~~-------------~~~g~~~~A~~~~~~m------~~~g---~~p~~--------~t~~~ll~~~~~----~~~~--- 209 (645)
.. .+.+++.+|..++.++ .+.. ++|+. ..|...+..... .++.
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~ 253 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence 10 1234455666555542 1111 23331 233333322211 1222
Q ss_pred -HHHHHHHHHHHHhCCCCchhHHHHHHHHHHH-------cCCHH-------HHHHHHcccCC-CCC-ChhhHHHHHHHHH
Q 048812 210 -EMGKNLHLFLEESTMKISGSLLNYLVDMYFK-------CGKIG-------EAQKLLGRYEI-DEV-DVVLWTTLVSGYV 272 (645)
Q Consensus 210 -~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~m~~-~~~-~~~~~~~li~~~~ 272 (645)
+.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++... ..| +...|..++..+.
T Consensus 254 ~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 254 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 24555666666653 4456666666666664 56665 67777776432 233 4666777777777
Q ss_pred hcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc
Q 048812 273 KSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352 (645)
Q Consensus 273 ~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~ 352 (645)
+.|++++|..+|+++.+.+ .
T Consensus 333 ~~g~~~~A~~~~~~al~~~------------------------------------------------------------p 352 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIE------------------------------------------------------------D 352 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSS------------------------------------------------------------S
T ss_pred hcCCHHHHHHHHHHHhCcc------------------------------------------------------------c
Confidence 7777777777776654321 1
Q ss_pred CCh-hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCC-ChHH
Q 048812 353 KNV-YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSA-CSHGGLVDEGYDFLSKKSRVYNIKP-KMQH 428 (645)
Q Consensus 353 ~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~ 428 (645)
.+. ..|..++..+.+.|+.++|.++|++..+. .|+ ...|...... +...|+.++|..+|+...+. .| +...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~ 427 (530)
T 2ooe_A 353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEY 427 (530)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHH
T ss_pred cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHH
Confidence 222 47888888888999999999999999875 333 3333332222 33589999999999998864 35 4788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM----PIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m----~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999999986 33332 458999999999999999999999999998884
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=4.1e-14 Score=140.13 Aligned_cols=267 Identities=12% Similarity=0.081 Sum_probs=171.0
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHH
Q 048812 168 YTSMGMYREGLGLLSKMGAEGVSPDE--VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIG 245 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 245 (645)
....|++..|+..+++.... .|+. .....+.+++...|+++.|...+.. .-+|+...+..+...|...|+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666665554332 2222 2334445555555655555543322 12344455555555666666666
Q ss_pred HHHHHHcccCCC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 246 EAQKLLGRYEID--EV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 246 ~A~~~~~~m~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
+|.+.++++... .| +...+..+...+.+.|++++|++.|++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------------------------------ 126 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------------------------------ 126 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------------------------------
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------------------------------
Confidence 666666553211 23 344455555556666666666665544
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHH
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTF---IALLSA 399 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ll~a 399 (645)
..+...+..++..|.+.|++++|++.|+++.+. .|+.... ...+..
T Consensus 127 -----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 127 -----------------------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSL 175 (291)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred -----------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHH
Confidence 134556777788888888888888888888875 3553211 123334
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH-
Q 048812 400 CSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKL- 476 (645)
Q Consensus 400 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~- 476 (645)
+...|++++|..+|+++.+. ...+...++.+..++.+.|++++|.+.+++. ...| +..+|..++..+...|+.++
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 44568899999999988864 2346788888999999999999999998885 4444 67789999999999999875
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 048812 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 477 a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~ 513 (645)
+.++++++++++|+++.+ .+...+.+.++++..
T Consensus 254 a~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 254 TNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 679999999999998754 345566666665544
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=9.3e-15 Score=147.06 Aligned_cols=267 Identities=12% Similarity=0.022 Sum_probs=206.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|.+.+..+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 55677888889999999999999999998763 2356678888888899999999999999998875 556778888889
Q ss_pred HHHHcCCHHHHHHHHcccCCCCC-ChhhHHHH--------------HH-HHHhcCCHHHHHHHHHhcccCCchhHHHHHH
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTL--------------VS-GYVKSNERDEARRLFDEMVERNLISWTLMIS 300 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~ 300 (645)
.|...|++++|.+.|++.....| +...+..+ .. .+...|++++|.+.++++.+.+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 168 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--------- 168 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---------
Confidence 99999999999988887433333 23333333 11 2444455555555555443211
Q ss_pred hhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 048812 301 GMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLE 380 (645)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 380 (645)
..+...|..+...|...|++++|+..|++
T Consensus 169 ---------------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 197 (327)
T 3cv0_A 169 ---------------------------------------------------PNDAQLHASLGVLYNLSNNYDSAAANLRR 197 (327)
T ss_dssp ---------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 23567888999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC--
Q 048812 381 MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-- 456 (645)
Q Consensus 381 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-- 456 (645)
+.+.. +.+..++..+...+...|++++|.++|+++.+. .| +...+..+...|.+.|++++|.+.+++. ...|
T Consensus 198 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 198 AVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 98763 335788899999999999999999999998853 44 4788999999999999999999999886 2233
Q ss_pred -----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 457 -----------DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 457 -----------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+..+|..+..++...|+.++|..++++.++..|
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 274 TTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp CC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999988776443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=171.94 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEME---ETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGC 431 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 431 (645)
..|||+||.+|++.|+.++|.++|++|. ..|+.||.+||++||.+|++.|++++|.++|++|. ..|+.||..+|++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCcHHHHHH
Confidence 4689999999999999999999998876 45899999999999999999999999999999999 6899999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCC-----CchhHHHHHHH
Q 048812 432 MVDLLGRAGH-LEESANFITSM---PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TDPL-----NDGAHVLLANI 501 (645)
Q Consensus 432 li~~~~~~g~-~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~-----~~~~y~~l~~~ 501 (645)
||+++++.|+ .++|.++|++| ++.||..+|+++++++.+. ..++..+++.. ..|. ...+-..|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 9999999998 57899999999 8999999999999776543 23333333321 1221 11233468888
Q ss_pred HHHcC
Q 048812 502 YAKAG 506 (645)
Q Consensus 502 ~~~~g 506 (645)
|++.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 88766
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=5.5e-13 Score=125.94 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=145.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+...|..+...+.+.|++++|+..|++..+.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------ 35 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN------------------------------------------------ 35 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------------------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 45567777777777777777777777665433
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc-----------CcHH
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHG-----------GLVD 407 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~-----------g~~~ 407 (645)
+.+...|..+...+.+.|++++|+..|++..+. .| +...+..+..++... |+++
T Consensus 36 ------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 36 ------------PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp ------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 235566777777888888888888888887775 34 456777777777777 9999
Q ss_pred HHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048812 408 EGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLT 485 (645)
Q Consensus 408 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 485 (645)
+|...|++..+ +.|+ ...+..+..+|...|++++|.+.+++. ....+...|..+..++...|++++|+..+++++
T Consensus 102 ~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 102 QALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998885 4564 678888899999999999999999886 212788899999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 486 ~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+++|+++..+..++.+|...|++++|...+++.
T Consensus 179 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 179 EQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHSTTCHHHHHHHHHHHTC--------------
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999988764
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=2.8e-12 Score=136.33 Aligned_cols=369 Identities=10% Similarity=-0.045 Sum_probs=218.2
Q ss_pred CCHHHHHHHHHHHHHh-----C--CCC-ChhhhhhHHHHHHhcCChHHHHHHHhhCC-------C---C-CcccHHHHHH
Q 048812 52 SSIDEFERIHSHLITT-----N--LMR-DPQISTQVFEFLVFTGDLGYAQQIIRQGD-------E---P-EIKIWNSIIE 112 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~-----g--~~~-~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-------~---~-~~~~~~~li~ 112 (645)
|+.++|.+.+...++. + ..| ...+|+.+...|...|++++|...|++.. . + ...+++.+..
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 8999999888877643 1 122 34578889999999999999999887642 1 1 2345666555
Q ss_pred HHHHcC--ChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHH---HHhcCChHHHHHHHHHHhhC
Q 048812 113 NQLING--YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISC---YTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 113 ~~~~~g--~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~---~~~~g~~~~A~~~~~~m~~~ 187 (645)
++...| ++++|++.|++... +...+...+..+... +...++.++|++.|++..+.
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~--------------------~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALE--------------------KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHH--------------------HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHH--------------------hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 555543 35555555554332 111244455555444 44568888999999988775
Q ss_pred CCCCChhhHHHHHHHHh----cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-Chh
Q 048812 188 GVSPDEVTMVSLISART----KLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVV 262 (645)
Q Consensus 188 g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~ 262 (645)
. +.+..++..+...+. ..+++++|.+.+..+.+.. +.+..++..+...|.+.|++++|...|++.....| +..
T Consensus 205 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 205 N-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp C-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred C-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence 3 224455555544444 3467889999999998876 66778889999999999999999999988544445 566
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHH
Q 048812 263 LWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIEL 342 (645)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~ 342 (645)
+|..+...|...+....+... .... ...... ...+.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~------~~~~-------------------------~~~~~~-------------~~~~~ 318 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRE------NGMY-------------------------GKRKLL-------------ELIGH 318 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------------------------------CHHHHH-------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHH------HHHH-------------------------HHHHHH-------------hhHHH
Confidence 777777666432211111000 0000 000000 02344
Q ss_pred HHHHHhhcC---cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHh
Q 048812 343 AYDLFSEIS---EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV--TFIALLS-ACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 343 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~~ 416 (645)
|...|.... ..+..+|..+...|...|++++|+..|++..+....|... .+..+.. .....|+.++|++.|.+.
T Consensus 319 A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 319 AVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555554432 3456789999999999999999999999998864433321 2222222 345789999999999998
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 417 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.+ +.|+........ +.+.+++++. . .+.+..+|..|...+...|++++|++.|+++++++|.+|.+
T Consensus 399 l~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 399 VK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred Hh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 85 677654333222 2233333332 2 23467789999999999999999999999999999888766
Q ss_pred HHHH
Q 048812 495 HVLL 498 (645)
Q Consensus 495 y~~l 498 (645)
+.-+
T Consensus 467 ~~~~ 470 (472)
T 4g1t_A 467 SSWN 470 (472)
T ss_dssp ----
T ss_pred hhcC
Confidence 5433
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=5.8e-13 Score=128.79 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCC
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDA 307 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~ 307 (645)
...+..+...|...|++++|...|++......+...|..+...|...|++++|++.|++..+.+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-------------- 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--------------
Confidence 345666677777777777777777653221256677777778888888888888877765421100
Q ss_pred chhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048812 308 EFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK----NVYLWTSVIAAYAMAGHAQKAIDLFLEMEE 383 (645)
Q Consensus 308 ~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 383 (645)
. .+ ...+|..+...|...|++++|+..|++...
T Consensus 71 ------------------------------------------~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 71 ------------------------------------------M-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp ------------------------------------------T-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------------c-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 0 01 146788899999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHH
Q 048812 384 TGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSI 460 (645)
Q Consensus 384 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~ 460 (645)
. .|+. ..+...|++++|.+.++.+.+ ..| +...+..+...+...|++++|.+.+++. . .+.+..+
T Consensus 108 ~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 175 (258)
T 3uq3_A 108 E--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175 (258)
T ss_dssp H--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred c--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHH
Confidence 5 4553 345667889999999999885 345 4678889999999999999999999987 2 2346789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
|..+...+...|++++|...++++++..|+++..|..++.+|...|++++|...+++..+.
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999988663
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.4e-12 Score=126.18 Aligned_cols=234 Identities=9% Similarity=-0.027 Sum_probs=131.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--c----hhHHH
Q 048812 159 ISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKI--S----GSLLN 232 (645)
Q Consensus 159 ~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~ 232 (645)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|.+.+..+++..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777777777777777777776665 566666667777777777777777776666542110 1 34444
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhh
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYK 312 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~ 312 (645)
.+...|.+.|++++|...|++.....|+.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------------------------- 112 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------------------------------------------------- 112 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH---------------------------------------------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh---------------------------------------------------
Confidence 44555555555555555544421111111
Q ss_pred hhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH
Q 048812 313 SCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QV 391 (645)
Q Consensus 313 a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~ 391 (645)
..+...|++++|+..++++... .|+ ..
T Consensus 113 --------------------------------------------------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 140 (258)
T 3uq3_A 113 --------------------------------------------------DILTKLRNAEKELKKAEAEAYV--NPEKAE 140 (258)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHC--CHHHHH
T ss_pred --------------------------------------------------HHHHHHhHHHHHHHHHHHHHHc--CcchHH
Confidence 1223334445555555554442 222 33
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACR 469 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~ 469 (645)
.+..+...+...|++++|.+.++++.+.. ..+...|..+...|.+.|++++|.+.+++. ...| +..+|..+...+.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 44444445555555555555555554321 113455555555666666666666655554 2223 4667777778888
Q ss_pred hcCChHHHHHHHHHHHhcC------CCCchhHHHHH
Q 048812 470 CHQNVKLAEHAFKHLTETD------PLNDGAHVLLA 499 (645)
Q Consensus 470 ~~g~~~~a~~~~~~~~~~~------p~~~~~y~~l~ 499 (645)
..|+.++|...+++++++. |.+...+..+.
T Consensus 219 ~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 8888888888888888877 66655544443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=1.3e-12 Score=127.62 Aligned_cols=258 Identities=12% Similarity=0.040 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS--GSLLNYLVDM 237 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~ 237 (645)
.+......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+..+++.+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44455566667777777777777766652 11333566666666666666666666666665321111 1224555555
Q ss_pred HHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhcc
Q 048812 238 YFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316 (645)
Q Consensus 238 y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~ 316 (645)
|.+.|++++|.+.|++.....| +..+|..+...|...|++++|++.|++..+.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------- 138 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------------------------- 138 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-------------------------
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-------------------------
Confidence 6666666666655555222222 33445555555555555555555554443221
Q ss_pred ccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 048812 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIA 395 (645)
Q Consensus 317 ~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ 395 (645)
..+...|..+...+...+++++|+..|++..+. .|+ ...+..
T Consensus 139 -----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 181 (272)
T 3u4t_A 139 -----------------------------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLW 181 (272)
T ss_dssp -----------------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred -----------------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHH
Confidence 123334444441222233555555555554442 222 333333
Q ss_pred HHHHHhccCc---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048812 396 LLSACSHGGL---VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQ 472 (645)
Q Consensus 396 ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g 472 (645)
+..++...|+ .++|...++++.+...-.|+.. - ..-..+|..+...+...|
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~-------------------------~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K-------------------------DELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-------------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-------------------------HHHHHHHHHHHHHHHHcC
Confidence 3333333333 3333333333332111111100 0 001246777888889999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 473 NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
++++|...++++++++|+++.+...+..+....+
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999999999877776665554433
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=4e-13 Score=131.50 Aligned_cols=241 Identities=12% Similarity=-0.032 Sum_probs=154.1
Q ss_pred CChHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 048812 207 RDLEMGKNLHLFLEESTM---KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARR 282 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 282 (645)
+++++|.+.+..+++... +.+..++..+...|...|++++|...|++.....| +..+|..+...|...|++++|++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 445555555555554321 11344555556666666666666666655322223 45666666677777777777777
Q ss_pred HHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHH
Q 048812 283 LFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVI 362 (645)
Q Consensus 283 ~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li 362 (645)
.|++..+.+ +.+..+|..+.
T Consensus 99 ~~~~al~~~------------------------------------------------------------~~~~~~~~~la 118 (275)
T 1xnf_A 99 AFDSVLELD------------------------------------------------------------PTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHC------------------------------------------------------------TTCTHHHHHHH
T ss_pred HHHHHHhcC------------------------------------------------------------ccccHHHHHHH
Confidence 666554321 12455677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 442 (645)
..|...|++++|+..|+++.+. .|+.......+..+...|++++|...+++.... ..++...+ .++..+...++.
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ 193 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISE 193 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCH
Confidence 7778888888888888887764 455444444445556667888888888776643 22333333 366667777777
Q ss_pred HHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 048812 443 EESANFITSM-PIPPD-----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIR 515 (645)
Q Consensus 443 ~~A~~~~~~m-~~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~ 515 (645)
++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|.+...+ ..++...|++++|.+.+
T Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 8888877765 33232 57888899999999999999999999999999775444 55677888888887765
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=2.1e-11 Score=128.67 Aligned_cols=307 Identities=12% Similarity=0.061 Sum_probs=197.9
Q ss_pred hhhccCCh---HHHHHHHccCCCCCcchHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCC
Q 048812 136 LLNKCGKL---KEVCQLFDKLPNRDVISWNTMISCYTSMG-----MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR 207 (645)
Q Consensus 136 ~~~~~g~~---~~A~~~f~~m~~~~~~~~n~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 207 (645)
+|...|+. ++|...|++..+.+..++..|...+...+ ++++|++.|++..+.|.. ..+..+...+...+
T Consensus 44 ~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 44 IQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP 120 (452)
T ss_dssp ---------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG
T ss_pred HHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC
Confidence 33445555 78888887776667778888888666665 778999999999987643 25555655555544
Q ss_pred Ch---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC----CHHHHHHHHcccCCCCCChhhHHHHHHHHHhcC---CH
Q 048812 208 DL---EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG----KIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSN---ER 277 (645)
Q Consensus 208 ~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g---~~ 277 (645)
.. ..+.+.+......| +......|...|...+ ..+.|..++.. ....+...+..|...|...| +.
T Consensus 121 ~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~--a~~~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 121 HSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp GGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH--HTTTCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCcccH
Confidence 33 34555555555555 3556777888888888 45566666766 33445558889999999999 88
Q ss_pred HHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhH
Q 048812 278 DEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYL 357 (645)
Q Consensus 278 ~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~ 357 (645)
++|++.|++..+.+. ++...
T Consensus 196 ~~A~~~~~~aa~~g~------------------------------------------------------------~~a~~ 215 (452)
T 3e4b_A 196 AELLKQMEAGVSRGT------------------------------------------------------------VTAQR 215 (452)
T ss_dssp HHHHHHHHHHHHTTC------------------------------------------------------------SCHHH
T ss_pred HHHHHHHHHHHHCCC------------------------------------------------------------HHHHH
Confidence 999999887764442 23333
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 048812 358 WTSVIAAYAMA----GHAQKAIDLFLEMEETGTKPDQVTFIALLSA-C--SHGGLVDEGYDFLSKKSRVYNIKPKMQHYG 430 (645)
Q Consensus 358 ~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 430 (645)
+..+...|... +++++|+.+|++.. .| +...+..+... + ...++.++|.++|++..+ .| +...+.
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~ 287 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAEL 287 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHH
Confidence 34455555433 67888888888876 33 33444444444 3 457888899998888873 33 566777
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 431 CMVDLLGRAG-----HLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 431 ~li~~~~~~g-----~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
.|..+|. .| ++++|.+.|++.- +-++..+..|...|.. ..|.++|...|++..+.+ ++.....|..+
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~ 363 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQL 363 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHH
Confidence 7777776 55 8999999998887 6677778777777765 348999999999988754 45677888888
Q ss_pred HHH----cCCchHHHHHHHHHHhCC
Q 048812 502 YAK----AGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 502 ~~~----~g~~~~a~~~~~~m~~~~ 522 (645)
|.. ..+.++|...++...+.|
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 875 357888999998887766
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=6.8e-12 Score=121.07 Aligned_cols=200 Identities=9% Similarity=0.069 Sum_probs=169.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcH
Q 048812 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNI 340 (645)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~ 340 (645)
...|..+...+...|++++|.+.|+++.+.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------------------- 67 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------------------- 67 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------------------------------------------
Confidence 5678888889999999999999988765322
Q ss_pred HHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 048812 341 ELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420 (645)
Q Consensus 341 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 420 (645)
..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.++++++.+ .
T Consensus 68 -----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~ 134 (252)
T 2ho1_A 68 -----------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-D 134 (252)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-C
T ss_pred -----------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-C
Confidence 2356678888899999999999999999998763 33677888888999999999999999999884 3
Q ss_pred CCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 421 NIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 421 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
+..| +...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...|++++|...++++++..|.+...+..
T Consensus 135 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 214 (252)
T 2ho1_A 135 TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLL 214 (252)
T ss_dssp TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3455 4678888999999999999999999886 223 357889999999999999999999999999999999899999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++.+|...|++++|.+.++++.+..
T Consensus 215 ~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 215 GIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987644
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.3e-11 Score=116.41 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=166.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+...|..+...+...|++++|++.|+++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------------------ 38 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------------------ 38 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------------------
Confidence 56678888888899999999998888765322
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHH
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG-GLVDEGYDFLSKKSR 418 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~ 418 (645)
..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...+... |++++|..+++.+.+
T Consensus 39 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 39 ------------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ------------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 2345678888899999999999999999998763 33677888888899999 999999999999885
Q ss_pred hcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCchh
Q 048812 419 VYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP-LNDGA 494 (645)
Q Consensus 419 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p-~~~~~ 494 (645)
.+..|+ ...+..+...+...|++++|.+.++++ ...| +...|..+...+...|++++|...++++++..| .++..
T Consensus 106 -~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 106 -DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp -STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred -CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 334443 678888999999999999999999886 3334 578889999999999999999999999999999 88888
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 495 HVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 495 y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+..+...+...|+.++|..+++.+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 185 LLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888999999999999999999988654
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=2.3e-12 Score=123.51 Aligned_cols=210 Identities=12% Similarity=0.069 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccC
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~ 306 (645)
...+..+...|...|++++|...|++.....| +...|..+...+...|++++|++.|+++.+.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD--------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------
Confidence 33444455555566666666665555322222 45555556666666666666666655543211
Q ss_pred CchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048812 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386 (645)
Q Consensus 307 ~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 386 (645)
..+...|..+...|...|++++|++.|+++.+..
T Consensus 88 ---------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 121 (243)
T 2q7f_A 88 ---------------------------------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG- 121 (243)
T ss_dssp ---------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-
T ss_pred ---------------------------------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 1234455556666666666666666666666542
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHH
Q 048812 387 KPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSL 464 (645)
Q Consensus 387 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~l 464 (645)
+.+...+..+...+...|++++|.++++++.+. ...+...+..+...+.+.|++++|.+.+++. . .+.+..+|..+
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 224555556666666666666666666666532 1123455556666666666666666666554 1 12245566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 048812 465 LRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLAN 500 (645)
Q Consensus 465 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~ 500 (645)
...+...|+.++|...+++++++.|+++..+..+..
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 666666666666666666666666666555544433
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=9.3e-12 Score=120.08 Aligned_cols=206 Identities=12% Similarity=0.032 Sum_probs=160.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccC
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQD 306 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~ 306 (645)
...+..+...|...|++++|...|+++....| +...|..+...|...|++++|.+.|+++.+.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 45666777778888888888888776432233 56778888888888888888888887764322
Q ss_pred CchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048812 307 AEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT 386 (645)
Q Consensus 307 ~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 386 (645)
..+...|..+...|...|++++|++.|+++...+.
T Consensus 102 ---------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 136 (252)
T 2ho1_A 102 ---------------------------------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136 (252)
T ss_dssp ---------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTT
T ss_pred ---------------------------------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCcc
Confidence 23456677888888899999999999998887444
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 048812 387 KPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWS 462 (645)
Q Consensus 387 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~ 462 (645)
.|+ ...+..+..++...|++++|.++++++.+. .| +...+..+...|.+.|++++|.+.++++ ... .+...+.
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 213 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL 213 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 554 567777888888999999999999988853 34 4778888999999999999999999886 333 4677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.+...+...|+.++|.+.++++++..|+++....
T Consensus 214 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 214 LGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888999999999999999999999998865543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.1e-11 Score=116.90 Aligned_cols=210 Identities=10% Similarity=0.077 Sum_probs=160.4
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 226 ISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 226 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
.+..++..+...|...|++++|.+.|+......| +...|..+...|...|++++|.+.|+++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 3456677777788888888888888776432233 56678888888888888888888887664321
Q ss_pred cCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 048812 305 QDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA-GHAQKAIDLFLEMEE 383 (645)
Q Consensus 305 ~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~ 383 (645)
..+..+|..+...|... |++++|+..|+++.+
T Consensus 73 -----------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 73 -----------------------------------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp -----------------------------------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred -----------------------------------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 23455677788888888 999999999998887
Q ss_pred cCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-C-CCH
Q 048812 384 TGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI-P-PDV 458 (645)
Q Consensus 384 ~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~-pd~ 458 (645)
.+..|+ ...+..+..++...|++++|.+.++++.+. .| +...+..+...+.+.|++++|.+.+++. .. + .+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (225)
T 2vq2_A 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182 (225)
T ss_dssp STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 434444 567777888888899999999999888853 34 4778888899999999999999998876 22 2 466
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
..+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 183 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 183 DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 7777777888999999999999999999999887665443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=3.8e-12 Score=130.45 Aligned_cols=247 Identities=8% Similarity=0.024 Sum_probs=141.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 048812 158 VISWNTMISCYTSMGMYREGLGLLSKMGAEGVSP-DEVTMVSLISARTKLRD-LEMGKNLHLFLEESTMKISGSLLNYLV 235 (645)
Q Consensus 158 ~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li 235 (645)
...|+.+...+.+.|++++|++.|++.+.. .| +...|..+..++...|+ +++|...+..+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345666666666667777777766666654 23 23455555555555564 666666666655554 33444555555
Q ss_pred HHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 236 DMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 236 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
.+|.+.|++++|...|++ +.+.+
T Consensus 174 ~~~~~~g~~~eAl~~~~k---------------------------------al~ld------------------------ 196 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIAD---------------------------------ILNQD------------------------ 196 (382)
T ss_dssp HHHHHHTCCTTHHHHHHH---------------------------------HHHHC------------------------
T ss_pred HHHHHccCHHHHHHHHHH---------------------------------HHHhC------------------------
Confidence 555555555555555544 33211
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA 395 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 395 (645)
..+...|..+..++...|++++|+..|+++++... -+...|+.
T Consensus 197 ------------------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~ 239 (382)
T 2h6f_A 197 ------------------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQ 239 (382)
T ss_dssp ------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHH
T ss_pred ------------------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 12344455555555555555555555555554311 13444555
Q ss_pred HHHHHhc-cCcHHHH-----HHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHH
Q 048812 396 LLSACSH-GGLVDEG-----YDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAG--HLEESANFITSMPIPP-DVSIWSSLL 465 (645)
Q Consensus 396 ll~a~~~-~g~~~~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-d~~~~~~ll 465 (645)
+..++.. .|..++| ++.|++..+ +.|+ ...|..+..+|...| ++++|.+.+.++...| +...+..|.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La 316 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 5555544 3333444 355555553 3443 455666666666655 4666666666654334 456677777
Q ss_pred HHHHhcC--------C-hHHHHHHHHHH-HhcCCCCchhHHHHHHHHHH
Q 048812 466 RACRCHQ--------N-VKLAEHAFKHL-TETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 466 ~a~~~~g--------~-~~~a~~~~~~~-~~~~p~~~~~y~~l~~~~~~ 504 (645)
..+...| + .++|..+++++ .+++|.....|..+...+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 7777653 2 58899999999 89999988888877776654
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=8.1e-12 Score=119.57 Aligned_cols=200 Identities=12% Similarity=0.090 Sum_probs=156.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
...+|..+...+...|++++|...|+++.+.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------ 53 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------------------------------ 53 (243)
T ss_dssp --------------------CCTTHHHHHTTC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 55678888888999999999999888876433
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
..+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...|++++|.++++++.+.
T Consensus 54 ------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 120 (243)
T 2q7f_A 54 ------------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120 (243)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2356778889999999999999999999998863 336788888999999999999999999999853
Q ss_pred cCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 420 YNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 420 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
. ..+...+..+...+.+.|++++|.+.++++ .. +.+...|..+...+...|++++|...++++++..|.++..+..
T Consensus 121 ~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (243)
T 2q7f_A 121 G--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198 (243)
T ss_dssp T--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 2 235778899999999999999999999887 22 3467889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++.+|...|++++|.+.++++.+..
T Consensus 199 la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 199 AGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999987643
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=5.3e-11 Score=116.49 Aligned_cols=159 Identities=11% Similarity=0.003 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCCh
Q 048812 355 VYLWTSVIAAYAM----AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH----GGLVDEGYDFLSKKSRVYNIKPKM 426 (645)
Q Consensus 355 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~ 426 (645)
..++..+...|.. .|++++|+..|++..+.+ +..++..+...+.. .+++++|.++|++..+ .+ +.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~ 146 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DG 146 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cH
Confidence 3445555666666 667777777776666653 55566666666666 6677777777766663 22 44
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 427 QHYGCMVDLLGR----AGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 427 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
..+..+...|.. .+++++|.+.+++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..|
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l 224 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNL 224 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHH
Confidence 555666666666 67777777776665212345666666777777 7777777777777777655 4566777
Q ss_pred HHHHHH----cCCchHHHHHHHHHHhCC
Q 048812 499 ANIYAK----AGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 499 ~~~~~~----~g~~~~a~~~~~~m~~~~ 522 (645)
..+|.. .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777 777777777777776655
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.42 E-value=4.2e-12 Score=119.85 Aligned_cols=207 Identities=16% Similarity=0.052 Sum_probs=117.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44555666666666666666666666665542 1234455555555555666666666655555553 333444444444
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhcc
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCAS 316 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~ 316 (645)
.|.+.+. . .. + .+...|++++|+..|++..+.+
T Consensus 82 ~~~~~~~---------~--~~--~---------~~~~~g~~~~A~~~~~~al~~~------------------------- 114 (217)
T 2pl2_A 82 AYVALYR---------Q--AE--D---------RERGKGYLEQALSVLKDAERVN------------------------- 114 (217)
T ss_dssp HHHHHHH---------T--CS--S---------HHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHhhh---------h--hh--h---------hcccccCHHHHHHHHHHHHHhC-------------------------
Confidence 4443310 0 00 0 0112266666666666554222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048812 317 IGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIAL 396 (645)
Q Consensus 317 ~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 396 (645)
+.+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 115 -----------------------------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 115 -----------------------------------PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp -----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred -----------------------------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 2345667778888888888888888888888776 677778888
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
..++...|++++|...|++..+ +.| +...+..+..++.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888888775 345 3566777777777888888887777654
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=4.1e-12 Score=131.81 Aligned_cols=297 Identities=14% Similarity=0.020 Sum_probs=216.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHh----CCC-C
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD----EVTMVSLISARTKLRDLEMGKNLHLFLEES----TMK-I 226 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~ 226 (645)
.....+......+.+.|++++|+..|++..+.+. .+ ...+..+...+...|+++.|...+..+++. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4555677778889999999999999999987632 12 246777888888999999999998887654 211 2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCCCC---CC----hhhHHHHHHHHHhcCC--------------------HHH
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDE---VD----VVLWTTLVSGYVKSNE--------------------RDE 279 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~----~~~~~~li~~~~~~g~--------------------~~~ 279 (645)
...++..+...|...|++++|...|++..... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 35567778889999999999998887632111 12 3467778888888888 666
Q ss_pred HHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhH
Q 048812 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYL 357 (645)
Q Consensus 280 A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~ 357 (645)
|.+.+++.. .++..... ....+
T Consensus 166 A~~~~~~al--------------------------------------------------------~~~~~~~~~~~~~~~ 189 (406)
T 3sf4_A 166 AVDFYEENL--------------------------------------------------------SLVTALGDRAAQGRA 189 (406)
T ss_dssp HHHHHHHHH--------------------------------------------------------HHHHHTTCHHHHHHH
T ss_pred HHHHHHHHH--------------------------------------------------------HHHHhccCcHHHHHH
Confidence 666655432 22222211 12356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETG-TKPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQH 428 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 428 (645)
|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..++++..+...-.++ ..+
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 8888999999999999999999987531 1122 347788888999999999999999987743211122 567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCchh
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM----PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDP------LNDGA 494 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m----~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p------~~~~~ 494 (645)
+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ....+
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 349 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTA 349 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 888999999999999999998876 11122 55788889999999999999999999988532 23456
Q ss_pred HHHHHHHHHHcCCch
Q 048812 495 HVLLANIYAKAGRLD 509 (645)
Q Consensus 495 y~~l~~~~~~~g~~~ 509 (645)
+..+..+|...|+..
T Consensus 350 ~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 350 RLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhHhH
Confidence 778888888888764
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=4e-11 Score=117.02 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=180.3
Q ss_pred chhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHhcCCCh
Q 048812 135 VLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE--VTMVSLISARTKLRDL 209 (645)
Q Consensus 135 ~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~ 209 (645)
..+...|++++|...|++..+ .+..+|..+...|.+.|++++|++.|++..+.+..|+. .+|..+...+...|++
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 345688999999999998652 45668999999999999999999999999885322222 2478888999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 210 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
++|...+..+++.. +.+..++..+...|...|++++|...|++.....| +...|..+...+...+++++|.+.|++..
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 55778999999999999999999999998655455 67778888734445569999999998765
Q ss_pred cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc
Q 048812 289 ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA 368 (645)
Q Consensus 289 ~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 368 (645)
+.+ +.+...|..+...+...
T Consensus 170 ~~~------------------------------------------------------------p~~~~~~~~~~~~~~~~ 189 (272)
T 3u4t_A 170 ELK------------------------------------------------------------PNIYIGYLWRARANAAQ 189 (272)
T ss_dssp HHS------------------------------------------------------------TTCHHHHHHHHHHHHHH
T ss_pred HhC------------------------------------------------------------ccchHHHHHHHHHHHHc
Confidence 322 23467788888999988
Q ss_pred CC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 048812 369 GH---AQKAIDLFLEMEETG-TKPD------QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK 425 (645)
Q Consensus 369 g~---~~~A~~l~~~m~~~g-~~pd------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 425 (645)
|+ +++|+..|++..+.. -.|+ ..++..+...+...|++++|.++|+++.+ +.|+
T Consensus 190 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~ 253 (272)
T 3u4t_A 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA---LDPT 253 (272)
T ss_dssp STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcc
Confidence 98 888999999987642 2233 24677777888888999999999988885 3554
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=1.4e-11 Score=120.46 Aligned_cols=243 Identities=7% Similarity=-0.091 Sum_probs=160.5
Q ss_pred hcCChHHHHHHHHHHhhCCCC--C-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHH
Q 048812 170 SMGMYREGLGLLSKMGAEGVS--P-DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGE 246 (645)
Q Consensus 170 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 246 (645)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346778888888887765321 1 24466777777778888888888888887765 4567778888888888888888
Q ss_pred HHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHH
Q 048812 247 AQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIW 325 (645)
Q Consensus 247 A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~ 325 (645)
|.+.|++.....| +..+|..+...|.+.|++++|.+.|+++.+.+.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------------------------------- 142 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--------------------------------- 142 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------------------
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---------------------------------
Confidence 8888877433334 577888888888888888888888887753221
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 048812 326 VHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL 405 (645)
Q Consensus 326 i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 405 (645)
+...+...+..+...|++++|+..+++.... .+++...+ .++..+...++
T Consensus 143 ----------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 192 (275)
T 1xnf_A 143 ----------------------------NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNIS 192 (275)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSC
T ss_pred ----------------------------CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcC
Confidence 1111222233335567888888888777665 23333333 35666667777
Q ss_pred HHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 048812 406 VDEGYDFLSKKSRVYNIKPK-----MQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~ 479 (645)
.++|.+.+....+ ..|+ ...+..+...|.+.|++++|.+.+++. ...|+. +.....++...|++++|..
T Consensus 193 ~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 193 EQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp HHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHH
Confidence 7888887777652 2332 467778888888888888888888876 455533 2233445666677777766
Q ss_pred HH
Q 048812 480 AF 481 (645)
Q Consensus 480 ~~ 481 (645)
.+
T Consensus 268 ~~ 269 (275)
T 1xnf_A 268 DL 269 (275)
T ss_dssp --
T ss_pred HH
Confidence 65
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=7.9e-12 Score=128.11 Aligned_cols=228 Identities=11% Similarity=0.119 Sum_probs=185.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCC-HHHHHHHHHhcccCCchhHHHHHHhhhcc
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNE-RDEARRLFDEMVERNLISWTLMISGMLNQ 305 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~t~~~ll~~~~~~ 305 (645)
..+++.+...|.+.|++++|...|++.....| +...|+.+...+...|+ +++|+..|++....+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 44566677777888888888888887443444 67788888888888886 999988888766433
Q ss_pred CCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048812 306 DAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG 385 (645)
Q Consensus 306 ~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 385 (645)
..+...|+.+...|...|++++|+..|+++++..
T Consensus 163 ----------------------------------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld 196 (382)
T 2h6f_A 163 ----------------------------------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD 196 (382)
T ss_dssp ----------------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred ----------------------------------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2467789999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHH-cCCHHHH-----HHHHHhC-CCCC-
Q 048812 386 TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGR-AGHLEES-----ANFITSM-PIPP- 456 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m-~~~p- 456 (645)
+-+...|..+..++...|++++|+..|+++.+ +.| +...|+.+..+|.+ .|..++| ++.+++. ...|
T Consensus 197 -P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~ 272 (382)
T 2h6f_A 197 -AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272 (382)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred -ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence 23578899999999999999999999999995 466 47889999999999 6665777 4666665 4445
Q ss_pred CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC---------CchHHHHHHHHH-Hh
Q 048812 457 DVSIWSSLLRACRCHQ--NVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG---------RLDDMSRIRMKL-RD 520 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g---------~~~~a~~~~~~m-~~ 520 (645)
+...|..+...+...| ++++|...++++ +.+|+++..+..|+.+|.+.| ..++|.++++++ .+
T Consensus 273 ~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 273 NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 5778999999998888 689999999998 899999999999999999875 258899999988 55
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.38 E-value=1.5e-10 Score=113.19 Aligned_cols=130 Identities=12% Similarity=-0.033 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCCh
Q 048812 355 VYLWTSVIAAYAM----AGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSH----GGLVDEGYDFLSKKSRVYNIKPKM 426 (645)
Q Consensus 355 ~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~ 426 (645)
..++..+...|.. .|++++|+..|++..+.+ +...+..+...+.. .++.++|.++|++..+. .+.
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~ 182 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDS 182 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCH
Confidence 3455566666666 777778888777777754 45556666666666 77888888888777742 245
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCC
Q 048812 427 QHYGCMVDLLGR----AGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 427 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..+..+..+|.. .+++++|.+.+++.-...+...+..|...+.. .++.++|...++++.+.+|++
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 667777778888 88888888888776212236677888888888 899999999999999998865
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=8.8e-12 Score=129.87 Aligned_cols=166 Identities=11% Similarity=-0.003 Sum_probs=119.0
Q ss_pred hhHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGH-----------------AQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHGGLVDEGYDF 412 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 412 (645)
..+|..+...|...|+ +++|+..+++..+. +..|. ..++..+...+...|++++|.++
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3456677777777788 78888877775432 22222 34667777788888888888888
Q ss_pred HHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCChHHHHHH
Q 048812 413 LSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFITSM----PIPP----DVSIWSSLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 413 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----d~~~~~~ll~a~~~~g~~~~a~~~ 480 (645)
+++..+...-.++ ...+..+...|...|++++|.+.+++. +... ...++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (411)
T 4a1s_A 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY 325 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8877643211112 236778888888889988888888765 1111 145778888889999999999999
Q ss_pred HHHHHhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 481 FKHLTETDPLN------DGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 481 ~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+++++++.+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 326 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99988854322 34777899999999999999999888755
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=2.9e-11 Score=125.30 Aligned_cols=273 Identities=14% Similarity=0.046 Sum_probs=208.1
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHcccCC-----CC-C-
Q 048812 191 PDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS----GSLLNYLVDMYFKCGKIGEAQKLLGRYEI-----DE-V- 259 (645)
Q Consensus 191 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~-~- 259 (645)
+....+......+...|++++|...+..+++.+. .+ ..++..+...|...|++++|...|++... .. +
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4455666777788899999999999999998853 23 35788889999999999999998876311 11 1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
...+|..+...|...|++++|...|++..+-
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------------------------------- 116 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI------------------------------------------------- 116 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------------------------------
Confidence 3557888899999999999999998776421
Q ss_pred HHHHHHHHhhcCc--CChhHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CCCCC-HHH
Q 048812 340 IELAYDLFSEISE--KNVYLWTSVIAAYAMAGH--------------------AQKAIDLFLEMEET----GTKPD-QVT 392 (645)
Q Consensus 340 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~~----g~~pd-~~t 392 (645)
+..... ....+|..+...|...|+ +++|+..+++.... +..|. ..+
T Consensus 117 -------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 189 (406)
T 3sf4_A 117 -------SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189 (406)
T ss_dssp -------HHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 111001 113467788888888999 99999998886542 21222 356
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHH
Q 048812 393 FIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFITSM----PIPPD----VSI 460 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd----~~~ 460 (645)
+..+...+...|++++|.+++++..+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..+
T Consensus 190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp HHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 778888999999999999999988753222222 347889999999999999999998875 11122 557
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 461 WSSLLRACRCHQNVKLAEHAFKHLTETDPLN------DGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 461 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+.+++..+
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8889999999999999999999999865432 45788999999999999999999998755
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=2.5e-11 Score=121.94 Aligned_cols=166 Identities=16% Similarity=0.071 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHH
Q 048812 356 YLWTSVIAAYAMAGH--------------------AQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHGGLVDEGY 410 (645)
Q Consensus 356 ~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~ 410 (645)
.+|..+...|...|+ +++|+..+++.... +..|. ..++..+...+...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 356666677777777 78888877775432 21222 346677777888889999999
Q ss_pred HHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHH
Q 048812 411 DFLSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFITSM----PIPPD----VSIWSSLLRACRCHQNVKLAE 478 (645)
Q Consensus 411 ~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd----~~~~~~ll~a~~~~g~~~~a~ 478 (645)
+++++..+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|.
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888887643211122 347788888899999999999888775 11122 557788888899999999999
Q ss_pred HHHHHHHhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 479 HAFKHLTETDPLN------DGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 479 ~~~~~~~~~~p~~------~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
..++++++..|.. ..++..++.+|...|++++|...+++..+.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999998865432 347778999999999999999999988764
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=2.1e-11 Score=128.76 Aligned_cols=369 Identities=9% Similarity=-0.020 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCCh---HHHHHHHhhCCCCCcccHHHHHHHHHHcC-----ChhHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDL---GYAQQIIRQGDEPEIKIWNSIIENQLING-----YPQEV 123 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~A 123 (645)
+++++|.+++..+.+.| ++..+..|-.+|...|+. ++|...|++..+.+...+..+...+...+ ++++|
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 78999999999998887 455566677778888888 89999999887667778888877565554 44555
Q ss_pred HHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChH---HHHHHHHHHhhCCCCCChhhHHHHH
Q 048812 124 FAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYR---EGLGLLSKMGAEGVSPDEVTMVSLI 200 (645)
Q Consensus 124 ~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll 200 (645)
+..|++... .-+..++..|...|...+..+ ++++.+......| +......+.
T Consensus 94 ~~~~~~Aa~----------------------~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 94 ESLLKKAFA----------------------NGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHHHH----------------------TTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHHHH----------------------CCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 555554432 124457777777777665543 3455555555444 334555566
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC---CHHHHHHHHcccCCCC-CChhhHHHHHHHHHhc--
Q 048812 201 SARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG---KIGEAQKLLGRYEIDE-VDVVLWTTLVSGYVKS-- 274 (645)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~~~-~~~~~~~~li~~~~~~-- 274 (645)
..+...+.++.+........+.-...++..+..|..+|.+.| +.++|.+.|+.....+ ++...+..|...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 666666655544444333333322344447888888999999 8888998888732222 3445556677766544
Q ss_pred --CCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc
Q 048812 275 --NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE 352 (645)
Q Consensus 275 --g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~ 352 (645)
+++++|++.|++.. |+
T Consensus 229 ~~~d~~~A~~~~~~aa-~g------------------------------------------------------------- 246 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG------------------------------------------------------------- 246 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG-------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHc-CC-------------------------------------------------------------
Confidence 67888888887765 43
Q ss_pred CChhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----cHHHHHHHHHHhHHhcCCCC
Q 048812 353 KNVYLWTSVIAA-Y--AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG-----LVDEGYDFLSKKSRVYNIKP 424 (645)
Q Consensus 353 ~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p 424 (645)
+...+..+... | ...|++++|+.+|++..+.| +...+..+...|. .| +.++|.++|++.. .-
T Consensus 247 -~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g 316 (452)
T 3e4b_A 247 -YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GR 316 (452)
T ss_dssp -STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TT
T ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CC
Confidence 23344445444 2 34788888988888888766 5556666666665 44 8888888887655 33
Q ss_pred ChHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 425 KMQHYGCMVDLLGR----AGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 425 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
+...+..|..+|.. ..++++|.++|++.--.-+......|...|.. .+|.++|...+++..+.++.......
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l 396 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLA 396 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56667777777765 34889999998886323344455566666653 46899999999999988764433222
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+......++.++|.++.++-++
T Consensus 397 ~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 397 TQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHH
Confidence 222222233455666666665443
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=1.2e-10 Score=106.49 Aligned_cols=165 Identities=12% Similarity=0.074 Sum_probs=146.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
.+...|..+...|...|++++|++.|++..+. .| +..++..+..++...|++++|...+...... .| +...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 77 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYY 77 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHH
Confidence 36778999999999999999999999999885 44 5778889999999999999999999998853 44 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL 508 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~ 508 (645)
.+...+...+++++|.+.+.+. ... .+...|..+...+...|++++|+..++++++++|.++.+|..++.+|.+.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8888999999999999999886 333 36778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 048812 509 DDMSRIRMKLRDMG 522 (645)
Q Consensus 509 ~~a~~~~~~m~~~~ 522 (645)
++|.+.+++..+..
T Consensus 158 ~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 DEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999987654
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=8.6e-12 Score=132.54 Aligned_cols=209 Identities=10% Similarity=0.027 Sum_probs=176.7
Q ss_pred HHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCH-HHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchh
Q 048812 244 IGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNER-DEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALY 321 (645)
Q Consensus 244 ~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~ 321 (645)
++++...++......+ +...|..+...|...|++ ++|++.|++..+.+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~------------------------------ 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE------------------------------ 133 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC------------------------------
Confidence 4555555554323333 677888889999999999 99999988765332
Q ss_pred hHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048812 322 HGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACS 401 (645)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 401 (645)
..+...|..+...|...|++++|++.|++..+. .|+...+..+..++.
T Consensus 134 ------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~ 181 (474)
T 4abn_A 134 ------------------------------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLR 181 (474)
T ss_dssp ------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHT
T ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHH
Confidence 235678899999999999999999999999874 588888899999999
Q ss_pred cc---------CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC----CH
Q 048812 402 HG---------GLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRA--------GHLEESANFITSM-PIPP----DV 458 (645)
Q Consensus 402 ~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p----d~ 458 (645)
.. |++++|.+.|++..+ +.| +...|..+..+|... |++++|.+.|++. ...| +.
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 258 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH
Confidence 99 999999999999985 355 478899999999999 9999999999987 4445 78
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
..|..+..++...|++++|...|+++++++|+++.++..+..++...|++++|.+.+.+
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999875543
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=9.1e-11 Score=129.89 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=148.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGC 431 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 431 (645)
+..+|+.|...|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|.+.|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 4678999999999999999999999999985 555 78899999999999999999999999985 5675 789999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCch
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLD 509 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~ 509 (645)
+..+|.+.|++++|.+.+++. .+.| +...|..|..++...|++++|+..|+++++++|+++.+|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999986 4555 57799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048812 510 DMSRIRMKLRD 520 (645)
Q Consensus 510 ~a~~~~~~m~~ 520 (645)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=2e-11 Score=121.47 Aligned_cols=242 Identities=13% Similarity=0.134 Sum_probs=158.3
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHcccCC--------CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHH
Q 048812 227 SGSLLNYLVDMYFKCGKIGEAQKLLGRYEI--------DEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTL 297 (645)
Q Consensus 227 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ 297 (645)
+..++..+...|...|++++|..+|++... ..+ ...+|..+...|...|++++|...|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------- 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 345566666677777777777776665322 111 3456777777788888888888877664311
Q ss_pred HHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHH
Q 048812 298 MISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDL 377 (645)
Q Consensus 298 ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 377 (645)
+.+.+..-......+|..+...|...|++++|+..
T Consensus 99 ---------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 133 (311)
T 3nf1_A 99 ---------------------------------------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL 133 (311)
T ss_dssp ---------------------------------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ---------------------------------------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 00000000012346788889999999999999999
Q ss_pred HHHHHHc------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHHHcCCHHH
Q 048812 378 FLEMEET------GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVY-----NIKP-KMQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 378 ~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~ 444 (645)
|++..+. +..|+ ..++..+...+...|++++|.++++++.+.. +..| ....+..+...|.+.|++++
T Consensus 134 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 213 (311)
T 3nf1_A 134 CKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQ 213 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9998764 33343 4567788889999999999999999887531 1133 25678889999999999999
Q ss_pred HHHHHHhCC----------CCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 445 SANFITSMP----------IPPD-------VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 445 A~~~~~~m~----------~~pd-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
|.+.++++- ..+. ...+..+...+...+.+.++...+++.....|..+.++..++.+|...|+
T Consensus 214 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 293 (311)
T 3nf1_A 214 AETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC
Confidence 999988761 1111 12233334445556677778888888888888888899999999999999
Q ss_pred chHHHHHHHHHHh
Q 048812 508 LDDMSRIRMKLRD 520 (645)
Q Consensus 508 ~~~a~~~~~~m~~ 520 (645)
+++|.+.+++..+
T Consensus 294 ~~~A~~~~~~al~ 306 (311)
T 3nf1_A 294 FEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=1.2e-09 Score=108.87 Aligned_cols=218 Identities=7% Similarity=0.000 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------HcCCH-------HHHHHHHcccCC-CCC-ChhhHHHHHHHHHh
Q 048812 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYF-------KCGKI-------GEAQKLLGRYEI-DEV-DVVLWTTLVSGYVK 273 (645)
Q Consensus 210 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~m~~-~~~-~~~~~~~li~~~~~ 273 (645)
+.|..+|+.+++.. +.+..+|..++..+. +.|++ ++|..+|++... ..| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666666653 445666666666554 34664 788888877544 244 55678888888888
Q ss_pred cCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcC
Q 048812 274 SNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEK 353 (645)
Q Consensus 274 ~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~ 353 (645)
.|++++|.++|++..+.+. .
T Consensus 112 ~~~~~~A~~~~~~al~~~p------------------------------------------------------------~ 131 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED------------------------------------------------------------I 131 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS------------------------------------------------------------S
T ss_pred cCCHHHHHHHHHHHHhccc------------------------------------------------------------c
Confidence 8888888888877654221 1
Q ss_pred Chh-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 354 NVY-LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSAC-SHGGLVDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 354 ~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
+.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.++|+...+. .| +...|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~ 207 (308)
T 2ond_A 132 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVL 207 (308)
T ss_dssp CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHH
T ss_pred CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 232 67788888888888888888888888753 23344444333332 2368899999999888753 34 467788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 431 CMVDLLGRAGHLEESANFITSM-P---IPP--DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~---~~p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.+++.+.+.|++++|..+|++. . ++| ....|..++......|+.+.|..+++++++..|+++
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 8888888889999999888876 2 354 466888888888889999999999999999888754
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=9.9e-10 Score=109.58 Aligned_cols=232 Identities=9% Similarity=-0.025 Sum_probs=164.2
Q ss_pred chHHHHHHHHHhc----CCh----HHHHHHHHHHhhCCCCCChhhHHHHHHHHh-------cCCCh-------HHHHHHH
Q 048812 159 ISWNTMISCYTSM----GMY----REGLGLLSKMGAEGVSPDEVTMVSLISART-------KLRDL-------EMGKNLH 216 (645)
Q Consensus 159 ~~~n~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~ 216 (645)
..|...+.--.++ ++. ++|+.+|++.+... +-+...|..+...+. ..|++ ++|..++
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 3455555544333 232 67888888887752 234556666666554 35776 8899999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHhcccCCchh
Q 048812 217 LFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD-VV-LWTTLVSGYVKSNERDEARRLFDEMVERNLIS 294 (645)
Q Consensus 217 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t 294 (645)
+..++.-.+.+...|..++..+.+.|++++|..+|++.....|+ .. .|..++..+.+.|++++|..+|++..+.+.
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-- 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-- 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--
Confidence 99887322446678888999999999999999999886555553 43 799999999999999999999988764322
Q ss_pred HHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHH-HHcCCHHH
Q 048812 295 WTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY-AMAGHAQK 373 (645)
Q Consensus 295 ~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~-~~~g~~~~ 373 (645)
.+...|....... ...|+.++
T Consensus 166 ----------------------------------------------------------~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 166 ----------------------------------------------------------TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp ----------------------------------------------------------CCTHHHHHHHHHHHHTSCCHHH
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHHcCCHHH
Confidence 1222233222221 12688899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHh
Q 048812 374 AIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK--MQHYGCMVDLLGRAGHLEESANFITS 451 (645)
Q Consensus 374 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (645)
|..+|++..+.. +-+...+..++..+...|++++|..+|+...+...+.|+ ...|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998887652 225677788888888889999999999888853234553 56788888888889999999888877
Q ss_pred C
Q 048812 452 M 452 (645)
Q Consensus 452 m 452 (645)
+
T Consensus 267 a 267 (308)
T 2ond_A 267 R 267 (308)
T ss_dssp H
T ss_pred H
Confidence 6
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=2.9e-10 Score=117.25 Aligned_cols=296 Identities=12% Similarity=0.092 Sum_probs=198.7
Q ss_pred HHhcCChHHHHHHHHHHhhC--CCCCChh--hHHHHHHHH--hcCCChHHHH-----------HHHHHHHHhCCCCch--
Q 048812 168 YTSMGMYREGLGLLSKMGAE--GVSPDEV--TMVSLISAR--TKLRDLEMGK-----------NLHLFLEESTMKISG-- 228 (645)
Q Consensus 168 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~--t~~~ll~~~--~~~~~~~~a~-----------~~~~~~~~~g~~~~~-- 228 (645)
+.+.+++++|..++++..+. .++.|.. .|-.++..- ...++++.+. +.+..+.....+.+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34578888888888887553 2323332 333333321 1122333333 555555433211111
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHcccCCC---CC----ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHH
Q 048812 229 --SLLNYLVDMYFKCGKIGEAQKLLGRYEID---EV----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMI 299 (645)
Q Consensus 229 --~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll 299 (645)
..+......|...|++++|...|++.... .+ ...+|..+...|...|++++|+..+++..
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al----------- 170 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY----------- 170 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------
Confidence 12223566778899999999999874221 12 34678889999999999999999887654
Q ss_pred HhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHH
Q 048812 300 SGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAID 376 (645)
Q Consensus 300 ~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 376 (645)
+++..... ....+++.+...|...|++++|+.
T Consensus 171 ---------------------------------------------~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 205 (383)
T 3ulq_A 171 ---------------------------------------------EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS 205 (383)
T ss_dssp ---------------------------------------------HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------------------------------HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 22222211 124568888999999999999999
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHHcCCHHHHHH
Q 048812 377 LFLEMEETGT-KPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVY---NIKP-KMQHYGCMVDLLGRAGHLEESAN 447 (645)
Q Consensus 377 l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~ 447 (645)
.|++..+... .++ ..++..+...+...|++++|.+++++..+.. +..| ...++..+...|.+.|++++|.+
T Consensus 206 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9998775311 122 2478888889999999999999999887421 2223 36778899999999999999999
Q ss_pred HHHhC-C---C--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 448 FITSM-P---I--PPD-VSIWSSLLRACRCHQN---VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 448 ~~~~m-~---~--~pd-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
.+++. . . .|. ...+..+...+...|+ .++|...+++. ...|.....+..|+.+|...|++++|...+++
T Consensus 286 ~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 286 YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 98875 1 1 122 2335667777888888 77777777766 23344456788899999999999999999998
Q ss_pred HHh
Q 048812 518 LRD 520 (645)
Q Consensus 518 m~~ 520 (645)
..+
T Consensus 365 al~ 367 (383)
T 3ulq_A 365 VEQ 367 (383)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=2.2e-10 Score=119.18 Aligned_cols=135 Identities=10% Similarity=-0.034 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----Ch
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KM 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~ 426 (645)
.+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.+++++..+...-.. ..
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4677778888888888888888888765311 112 23677777888888888888888887764321111 15
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-------PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
..+..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 67788888899999999999888775 1111 1447788888999999999999999999997763
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.22 E-value=6.4e-10 Score=101.48 Aligned_cols=169 Identities=14% Similarity=0.111 Sum_probs=142.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+...|..+...|.+.|++++|++.|++..+.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~------------------------------------------------ 35 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------------------------------------------------ 35 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 56678888888999999999999888765433
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
+.+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...+...++++.+.+.+.+..+
T Consensus 36 ------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~- 101 (184)
T 3vtx_A 36 ------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIA- 101 (184)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 2366788899999999999999999999998763 33567777778889999999999999999885
Q ss_pred cCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 420 YNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 420 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
+.| +...+..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+..|+++++++|+++
T Consensus 102 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 102 --LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred --hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 345 4778899999999999999999999887 3344 678899999999999999999999999999999763
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=5e-11 Score=118.58 Aligned_cols=256 Identities=12% Similarity=0.047 Sum_probs=138.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh
Q 048812 157 DVISWNTMISCYTSMGMYREGLGLLSKMGAE-------GVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS 229 (645)
Q Consensus 157 ~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 229 (645)
+..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+..+++..-
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----- 100 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE----- 100 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----
Confidence 3567889999999999999999999998762 1122234566666677777777777777766654310
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCch
Q 048812 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~ 309 (645)
+.+.. .......+|..+...|...|++++|.+.|++..+..
T Consensus 101 -------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------------------ 141 (311)
T 3nf1_A 101 -------------------KTLGK--DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------------------ 141 (311)
T ss_dssp -------------------HHHCT--TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH------------------
T ss_pred -------------------HHhCC--CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH------------------
Confidence 00000 000122334444444444555555554444332100
Q ss_pred hhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 048812 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----- 384 (645)
Q Consensus 310 ~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 384 (645)
.+.+..-......+|..+...|...|++++|++.|+++.+.
T Consensus 142 ----------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 142 ----------------------------------EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp ----------------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred ----------------------------------HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 00000000112344566666677777777777777766553
Q ss_pred -CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCCC-------hHHHHHHHHHHHHcCCHHHHHHHH
Q 048812 385 -GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVY------NIKPK-------MQHYGCMVDLLGRAGHLEESANFI 449 (645)
Q Consensus 385 -g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~ 449 (645)
+..|+ ..++..+...+...|++++|.++++++.+.. ...|. ...+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 22333 3455666666777777777777776666311 11111 122233334444555666666666
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 450 TSMP-IPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 450 ~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
+... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6653 233 4567889999999999999999999999988764
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=6.5e-10 Score=100.93 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=143.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...|..+...+...|++++|+..|+++.+. .+.+..++..+...+...|++++|.++++++.+. ...+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 356778888999999999999999998764 2346788888899999999999999999998853 1235788899999
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHH
Q 048812 435 LLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~ 512 (645)
.+...|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999886 2 33477889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 048812 513 RIRMKLRDMG 522 (645)
Q Consensus 513 ~~~~~m~~~~ 522 (645)
+.+++..+..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 9999886643
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=7.3e-10 Score=114.24 Aligned_cols=234 Identities=9% Similarity=0.057 Sum_probs=175.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHHcCCHHHHHHHHcccCCC---CC-----ChhhHH
Q 048812 199 LISARTKLRDLEMGKNLHLFLEES----TMKI-SGSLLNYLVDMYFKCGKIGEAQKLLGRYEID---EV-----DVVLWT 265 (645)
Q Consensus 199 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~-----~~~~~~ 265 (645)
....+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...+++.... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567889999999999998764 2111 3467888899999999999988887763110 11 245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHH
Q 048812 266 TLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYD 345 (645)
Q Consensus 266 ~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~ 345 (645)
.+...|...|++++|++.|++..+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~-------------------------------------------------------- 212 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYS-------------------------------------------------------- 212 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH--------------------------------------------------------
Confidence 899999999999999998876542
Q ss_pred HHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 346 LFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 346 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
++..... ....+|+.+...|...|++++|+..|++..+. +..|+ ..++..+...+...|++++|.+++++..+
T Consensus 213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111111 11346788999999999999999999998762 33243 67788888999999999999999998875
Q ss_pred hcCCCCC---hHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 419 VYNIKPK---MQHYGCMVDLLGRAGH---LEESANFITSMPIPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 419 ~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
...-.++ ...+..+...|...|+ +++|..++++.+..|+. ..+..|...|...|++++|...+++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 293 YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3211112 3346778888889999 99999999999665543 467788888999999999999999998854
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=6.6e-10 Score=117.99 Aligned_cols=213 Identities=12% Similarity=0.028 Sum_probs=174.7
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 048812 173 MYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDL-EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLL 251 (645)
Q Consensus 173 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 251 (645)
.+++++..+.+..... +.+...+..+..++...|++ ++|.+.+..+++.. +.+...+..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567777777766542 23566788888889999999 99999999998876 556788999999999999999999999
Q ss_pred cccCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhh
Q 048812 252 GRYEIDEVDVVLWTTLVSGYVKS---------NERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYH 322 (645)
Q Consensus 252 ~~m~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~ 322 (645)
++.....|+...|..+...|... |++++|++.|++..+.+
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------- 209 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD------------------------------- 209 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------------------------------
Confidence 98666678888889999999998 89999999888765322
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCC----CH
Q 048812 323 GIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMA--------GHAQKAIDLFLEMEETGTKP----DQ 390 (645)
Q Consensus 323 g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p----d~ 390 (645)
..+...|..+..+|... |++++|+..|++..+. .| +.
T Consensus 210 -----------------------------p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 258 (474)
T 4abn_A 210 -----------------------------VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNP 258 (474)
T ss_dssp -----------------------------TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCH
T ss_pred -----------------------------CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCH
Confidence 23567788888888888 8999999999999885 45 68
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 391 VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 391 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
..+..+..++...|++++|.+.|++..+ +.|+ ...+..+..++...|++++|.+.+.++
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999885 3554 667888888899999999988877665
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.19 E-value=3.9e-10 Score=113.10 Aligned_cols=272 Identities=14% Similarity=0.011 Sum_probs=169.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHhcCCChHHHHHHHHHHHHh----CC-CCchhH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPD-----EVTMVSLISARTKLRDLEMGKNLHLFLEES----TM-KISGSL 230 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~ 230 (645)
+......+...|++++|+..|+++.+.. |+ ...+..+...+...|+++.|.+.+..+++. +. +....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3344455555666666666666655542 22 234445555555666666666655554432 11 112445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCC---CCC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEID---EVD----VVLWTTLVSGYVKSNE--------------------RDEARRL 283 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 283 (645)
+..+...|...|++++|...|++.... .++ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 566667777777777777666652110 111 3366677777777777 6666666
Q ss_pred HHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhHHHHH
Q 048812 284 FDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTSV 361 (645)
Q Consensus 284 ~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~l 361 (645)
+++.. .++..... ....+|..+
T Consensus 166 ~~~a~--------------------------------------------------------~~~~~~~~~~~~~~~~~~l 189 (338)
T 3ro2_A 166 YEENL--------------------------------------------------------SLVTALGDRAAQGRAFGNL 189 (338)
T ss_dssp HHHHH--------------------------------------------------------HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHH--------------------------------------------------------HHHHhcCCHHHHHHHHHHH
Confidence 55432 11111111 123467778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHH
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGT-KPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCM 432 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 432 (645)
...|...|++++|+..+++..+... .++ ..++..+...+...|++++|.+++++..+...-.++ ...+..+
T Consensus 190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (338)
T 3ro2_A 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 8888889999999999888764310 111 236777778888899999999988887643211122 5677888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048812 433 VDLLGRAGHLEESANFITSM-P---IPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~---~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88999999999999888775 1 1112 447788888999999999999999999987664
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=2.7e-08 Score=101.92 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH--
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTK--P--DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYG-- 430 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 430 (645)
.+..+...|...|++++|...+++....... | ...++..+...+...|++++|..++++......-......+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4555666777778888888777776653221 1 134566666677777888888887777664211111111111
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhH
Q 048812 431 ---CMVDLLGRAGHLEESANFITSMP-IPPD-----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL------NDGAH 495 (645)
Q Consensus 431 ---~li~~~~~~g~~~~A~~~~~~m~-~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------~~~~y 495 (645)
..+..+...|++++|...+++.. ..|. ...+..+...+...|++++|...++++++..+. ....+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 23344678888888888887762 2221 234667777788889999999988888774322 11366
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+..+|...|+.++|...+++..+
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6788888899999999988887754
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=1e-09 Score=104.03 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=133.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGC 431 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 431 (645)
.|...|......+...|++++|+..|++..+....++...+..+..++...|++++|.+.|++..+ ..|+ ...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 456788889999999999999999999999875447888888888999999999999999999885 4664 678899
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DV-------SIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLAN 500 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~ 500 (645)
+...|...|++++|.+.+++. ...| +. .+|..+...+...|++++|+..++++++++|+ ++..+..++.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999886 3334 34 45888888899999999999999999999999 8899999999
Q ss_pred HHHHcCCc
Q 048812 501 IYAKAGRL 508 (645)
Q Consensus 501 ~~~~~g~~ 508 (645)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988887
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=2.7e-09 Score=96.80 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.++++++.+. ...+...+..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 118 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGV 118 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHH
Confidence 3445555566666666666666666665541 224555555666666666666666666666542 1224556666666
Q ss_pred HHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 435 LLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.+...|++++|.+.+++. . .+.+..+|..+...+...|++++|...++++++..|+++..
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 777777777777776665 2 22356778888888888999999999999998888876543
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.11 E-value=1.3e-07 Score=103.54 Aligned_cols=133 Identities=9% Similarity=-0.001 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEET-G-TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
.|-..+....+.|..+.|..+|.+..+. + ..+......+.+.- ...++.+.|.++|+...+.++ -+...+...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFA--TDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHH
Confidence 5666666666677777777777777654 2 12222222222221 123447777777777775432 23445566677
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 435 LLGRAGHLEESANFITSM-PIPP----DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 777777777777777765 2222 234677777777777777777777777777777653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=8.4e-09 Score=106.03 Aligned_cols=302 Identities=13% Similarity=0.099 Sum_probs=196.8
Q ss_pred HHHHHHH--HhcCChHHHHHHHHHHhhC--CCCCCh--hhHHHHHHHH--hcCCChHHHH---------HHHHHHHHhCC
Q 048812 162 NTMISCY--TSMGMYREGLGLLSKMGAE--GVSPDE--VTMVSLISAR--TKLRDLEMGK---------NLHLFLEESTM 224 (645)
Q Consensus 162 n~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~--~t~~~ll~~~--~~~~~~~~a~---------~~~~~~~~~g~ 224 (645)
+.|-.-| ...+++++|..++++.... .++.|. ..|-.++..- ...+++.... +.++.+.....
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 93 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK 93 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence 3333444 6788899999988876542 222232 2334443321 1112222222 55555443221
Q ss_pred CCch----hHHHHHHHHHHHcCCHHHHHHHHcccCCC---CC----ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCch
Q 048812 225 KISG----SLLNYLVDMYFKCGKIGEAQKLLGRYEID---EV----DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLI 293 (645)
Q Consensus 225 ~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 293 (645)
+.+. ..+......+...|++++|...|++.... .+ ...++..+...|...|++++|+..+++..
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al----- 168 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL----- 168 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-----
Confidence 1111 12233455677899999999999874221 12 24578888999999999999999887653
Q ss_pred hHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCC
Q 048812 294 SWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGH 370 (645)
Q Consensus 294 t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 370 (645)
+++..... ....+++.+...|...|+
T Consensus 169 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 197 (378)
T 3q15_A 169 ---------------------------------------------------DIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197 (378)
T ss_dssp ---------------------------------------------------HHHHTSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------------------------HHHHhCCCchhhHHHHHHHHHHHHHHhCC
Confidence 22222211 124578889999999999
Q ss_pred HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHHHcCCH
Q 048812 371 AQKAIDLFLEMEET----GTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVY---NIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 371 ~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~ 442 (645)
+++|++.|++..+. +..+ ...++..+..++...|++++|.++|++..+.. +......++..+...|.+.|++
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence 99999999987653 1111 13567788889999999999999999887411 2222367788899999999999
Q ss_pred HHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHH
Q 048812 443 EESANFITSM----PI--PPD-VSIWSSLLRACRCHQN---VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMS 512 (645)
Q Consensus 443 ~~A~~~~~~m----~~--~pd-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~ 512 (645)
++|.+.+++. +. .|. ...+..+...+...++ +++|...+++. ...|.....+..++..|...|++++|.
T Consensus 278 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~ 356 (378)
T 3q15_A 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAA 356 (378)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999875 11 222 3345555555667777 77777777762 222334457778999999999999999
Q ss_pred HHHHHHHh
Q 048812 513 RIRMKLRD 520 (645)
Q Consensus 513 ~~~~~m~~ 520 (645)
..+++..+
T Consensus 357 ~~~~~al~ 364 (378)
T 3q15_A 357 AFYRKVLK 364 (378)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.10 E-value=5.3e-09 Score=99.02 Aligned_cols=142 Identities=12% Similarity=-0.006 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h-------
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-M------- 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~------- 426 (645)
..|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|.+.+++..+. .|+ .
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~ 117 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYA 117 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHH
Confidence 33444555555555566666555555542 333 344555555555555666665555555532 232 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCh---------------------------H
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIPPD---VSIWSSLLRACRCHQNV---------------------------K 475 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd---~~~~~~ll~a~~~~g~~---------------------------~ 475 (645)
..|..+...+...|++++|.+.+++. ...|+ ...|..+...+...|+. +
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFK 197 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33455555555555666666555554 34443 23445555555444443 8
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
+|...++++++++|+++.+...+..+.
T Consensus 198 ~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 198 KAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888888888888888876666655543
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=6.7e-09 Score=106.77 Aligned_cols=132 Identities=8% Similarity=0.134 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK---MQH 428 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 428 (645)
.+++.+...|...|++++|+..|++..+. +.+....++..+...+...|+.++|..++++..+...-.++ ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45677778888888888888888877651 22223566777778888888888888888887753322112 345
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 429 YGCMVDLLGRAGH---LEESANFITSMPIPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 429 ~~~li~~~~~~g~---~~~A~~~~~~m~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
+..+...|...|+ +++|...+++.+..|+. ..+..+...|...|++++|...++++++.
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5666666777777 88888888887554443 35667778888999999999999888763
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=5.6e-09 Score=101.80 Aligned_cols=182 Identities=14% Similarity=0.162 Sum_probs=145.3
Q ss_pred cHHHHHHHHhhcCcC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCcHH
Q 048812 339 NIELAYDLFSEISEK----NVYLWTSVIAAYAMAGHAQKAIDLFLEMEET------GTKPD-QVTFIALLSACSHGGLVD 407 (645)
Q Consensus 339 ~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~ 407 (645)
.+++|.+++.....+ ...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|+++
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 456667777665433 3567899999999999999999999998764 33343 567888899999999999
Q ss_pred HHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC--------CC-CHHHHHHHHHHHHhc
Q 048812 408 EGYDFLSKKSRVY-----NIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PI--------PP-DVSIWSSLLRACRCH 471 (645)
Q Consensus 408 ~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--------~p-d~~~~~~ll~a~~~~ 471 (645)
+|.++++++.+.. .-.| ....+..+...|...|++++|.+.+++. .. .| ...++..+...+...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999888532 1123 3678889999999999999999998876 21 33 345788899999999
Q ss_pred CChHHHHHHHHHHHhcC-------------------------------------------------CCCchhHHHHHHHH
Q 048812 472 QNVKLAEHAFKHLTETD-------------------------------------------------PLNDGAHVLLANIY 502 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~-------------------------------------------------p~~~~~y~~l~~~~ 502 (645)
|++++|...+++++++. |..+.++..++.+|
T Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 262 (283)
T 3edt_B 183 GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY 262 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999998751 33345678899999
Q ss_pred HHcCCchHHHHHHHHHHh
Q 048812 503 AKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~ 520 (645)
...|++++|..++++..+
T Consensus 263 ~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 263 RRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998765
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=2.5e-08 Score=96.63 Aligned_cols=191 Identities=12% Similarity=0.013 Sum_probs=150.4
Q ss_pred cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-h
Q 048812 352 EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-M 426 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 426 (645)
..+...+-.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++...|++++|...|+...+.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456777788888999999999999999998753 33 567888888999999999999999999975433333 4
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCChHHHHH
Q 048812 427 QHYGCMVDLLGR--------AGHLEESANFITSM-PIPPD-VSIW-----------------SSLLRACRCHQNVKLAEH 479 (645)
Q Consensus 427 ~~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~pd-~~~~-----------------~~ll~a~~~~g~~~~a~~ 479 (645)
..+..+...+.. .|++++|...|++. ...|+ ...+ ..+...+...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 667788888888 99999999999886 22232 2233 456777999999999999
Q ss_pred HHHHHHhcCCCCc---hhHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCC
Q 048812 480 AFKHLTETDPLND---GAHVLLANIYAKA----------GRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDI 546 (645)
Q Consensus 480 ~~~~~~~~~p~~~---~~y~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~ 546 (645)
.++++++..|+++ ..+..++.+|... |++++|...++++.+.. |
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p------------------- 226 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P------------------- 226 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-------------------
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-------------------
Confidence 9999999999853 5788899999877 89999999999987633 1
Q ss_pred CCcChHHHHHHHHHHHHHHHH
Q 048812 547 FNPHSEEIYLMLNEIEMTLQQ 567 (645)
Q Consensus 547 ~~~~~~~~~~~l~~l~~~m~~ 567 (645)
.+|...++...+.++..++.+
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 355567777777777776654
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.8e-08 Score=98.16 Aligned_cols=164 Identities=10% Similarity=0.040 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC---
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHG-GLVDEGYDFLSKKSRVYNIKPK--- 425 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~--- 425 (645)
..+|+.+...|...|++++|+..|++..+. |-.+. ..++..+...|... |++++|...|++..+...-..+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 457888999999999999999999987653 11111 35788888899986 9999999999988853211111
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh-
Q 048812 426 -MQHYGCMVDLLGRAGHLEESANFITSM-PIPP---DV-----SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA- 494 (645)
Q Consensus 426 -~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---d~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~- 494 (645)
..++..+...|.+.|++++|.+.+++. ...| +. ..|..+..++...|+++.|...+++.++++|.....
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 456888999999999999999999886 2222 21 156777888999999999999999999999976543
Q ss_pred ----HHHHHHHHH--HcCCchHHHHHHHHH
Q 048812 495 ----HVLLANIYA--KAGRLDDMSRIRMKL 518 (645)
Q Consensus 495 ----y~~l~~~~~--~~g~~~~a~~~~~~m 518 (645)
+..+...|. ..+++++|...++.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334556664 456677777777544
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=5.8e-09 Score=115.46 Aligned_cols=165 Identities=12% Similarity=0.125 Sum_probs=142.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 260 DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
+..+|+.|...|.+.|++++|++.|++..+-+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~------------------------------------------------ 39 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF------------------------------------------------ 39 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 46678889999999999999999988765322
Q ss_pred HHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 340 IELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
..+..+|+.+...|.+.|++++|++.|++..+. .|+ ...|..+..++...|++++|.+.|++..+
T Consensus 40 ------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 40 ------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp ------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 235678899999999999999999999999885 555 78899999999999999999999999885
Q ss_pred hcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 419 VYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 419 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
+.|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..|..++...|++++|.+.+++++++.|
T Consensus 106 ---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 106 ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 5675 788999999999999999999999986 5556 567899999999999999999999999988543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=8e-08 Score=94.78 Aligned_cols=135 Identities=15% Similarity=0.015 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----
Q 048812 357 LWTSVIAAYAMA-GHAQKAIDLFLEMEETGTK-PD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM---- 426 (645)
Q Consensus 357 ~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---- 426 (645)
+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|..+|++..+...-.+..
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 456666677775 7777777777776542100 01 2456666777777777777777777776421111111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCC
Q 048812 427 -QHYGCMVDLLGRAGHLEESANFITSM-PIPPDVS------IWSSLLRACR--CHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 427 -~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~------~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++++|...|+++..++|..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 14566667777777777777777775 3344321 3444555554 3456777777777777776654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=6.1e-08 Score=94.32 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------C
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEET------GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVY------N 421 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~ 421 (645)
..+|..+...|...|++++|+..|++..+. +..|+ ..++..+...+...|++++|.++++++.+.. .
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 206 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGS 206 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777777777777777777776653 11332 4566667777777777777777777766421 1
Q ss_pred CCCC-hHHHHHHHHHHHHc------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048812 422 IKPK-MQHYGCMVDLLGRA------GHLEESANFITSMP-IPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTET 487 (645)
Q Consensus 422 ~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 487 (645)
..+. ...+..+...+... ..+.++...++... ..| ...++..+...+...|++++|...++++++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 207 VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1222 22333333333222 23455555555553 223 3457888888899999999999999998764
No 88
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.92 E-value=2.5e-06 Score=93.31 Aligned_cols=169 Identities=8% Similarity=0.003 Sum_probs=117.5
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHhccCcHHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETG---------TKPD------------QVTFIALLSACSHGGLVDEGYD 411 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~pd------------~~t~~~ll~a~~~~g~~~~a~~ 411 (645)
.+...|-..+...-+.|++++|.++|+++.... -.|+ ...|...+....+.|.++.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 355667778888888888888888888887641 0132 2356666777777788888888
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048812 412 FLSKKSRVYNIKPKMQHYGCMVDLLGRAG-HLEESANFITSM--PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 412 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
+|..+.+..+ .+....|...+.+-.+.| +.+.|.++|+.. .++-+...|...+.-....|+.+.|..+|++++...
T Consensus 456 vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 8888875311 112334433333334444 488888888776 233466677788887778888888888888888877
Q ss_pred CC---CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 489 PL---NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 489 p~---~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|+ ....|...+..-.+.|..+.+.++.+++.+.-
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 63 34567777777788888888888888887754
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.89 E-value=1.4e-06 Score=88.99 Aligned_cols=221 Identities=15% Similarity=0.028 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCChh----hhhhHHHHHHhcCChHHHHHHHhhCC-----CCCc----ccHHHHHHHHHHcC
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQ----ISTQVFEFLVFTGDLGYAQQIIRQGD-----EPEI----KIWNSIIENQLING 118 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~~~~A~~~f~~~~-----~~~~----~~~~~li~~~~~~g 118 (645)
++++.+...+...+......+.. +++.+...|...|++++|...+++.. ..+. .+++.+...+...|
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 88999999998887764222222 45666778888999999999998754 1222 23566777888889
Q ss_pred ChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--C-
Q 048812 119 YPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNR----DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVS--P- 191 (645)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~----~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~--p- 191 (645)
++++|+..+++.. .+......+ ...+++.+...|...|++++|...+++....... +
T Consensus 108 ~~~~A~~~~~~al----------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 108 FLQTAWETQEKAF----------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp CHHHHHHHHHHHH----------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred CHHHHHHHHHHHH----------------HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 9998888887643 333333322 2345677888999999999999999998754221 1
Q ss_pred -ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHHcCCHHHHHHHHcccCCCCCC----
Q 048812 192 -DEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISG-SLLN-----YLVDMYFKCGKIGEAQKLLGRYEIDEVD---- 260 (645)
Q Consensus 192 -~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~y~~~g~~~~A~~~~~~m~~~~~~---- 260 (645)
...++..+...+...|++++|...+.......-.++. ..+. ..+..+...|++++|...+++.....+.
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 1245777778888999999999999988765322211 1111 3345588999999999999985433332
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 261 -VVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 261 -~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
...+..+...+...|++++|...+++..
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2246778888999999999999988764
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=8.5e-08 Score=81.40 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 436 (645)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++++.+. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45666777777777777777777776642 224555666666666666666666666665532 12
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 048812 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|...++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2334455555555566666666666666666666555566666666666666666666666
Q ss_pred HHHh
Q 048812 517 KLRD 520 (645)
Q Consensus 517 ~m~~ 520 (645)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5544
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=2.3e-07 Score=87.58 Aligned_cols=169 Identities=9% Similarity=-0.026 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-QHYGC 431 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 431 (645)
...+..+...+...|++++|+..|+++.+.... |. ...+..+..++...|++++|...|+++.+.+.-.|.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345566677788889999999999998875321 21 3567777888889999999999999888654333332 23444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCh
Q 048812 432 MVDLLGR------------------AGHLEESANFITSM-PIPPDV-SIW-----------------SSLLRACRCHQNV 474 (645)
Q Consensus 432 li~~~~~------------------~g~~~~A~~~~~~m-~~~pd~-~~~-----------------~~ll~a~~~~g~~ 474 (645)
+...+.+ .|++++|...|+++ ...|+. ..+ ..+...+...|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 4444443 57889999888876 333432 222 2345568889999
Q ss_pred HHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 475 KLAEHAFKHLTETDPLND---GAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~~---~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 999999999999999876 5688999999999999999999999987653
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.85 E-value=8.9e-08 Score=81.30 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 505 (645)
.|..+...+.+.|++++|.++++++ . .+.+...|..+...+...|++++|...++++.+..|.++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4667778888888888888888776 2 2346778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048812 506 GRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 506 g~~~~a~~~~~~m~~~~ 522 (645)
|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987754
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.85 E-value=1.2e-07 Score=91.74 Aligned_cols=154 Identities=12% Similarity=-0.004 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPD-QVTFIALLSACSH--------GGLVDEGYDFLSKKSRVYNIKPK 425 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-~~t~~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~ 425 (645)
..|..+..+|.+.|++++|+..|++..+... .|+ ...+..+..++.. .|++++|...|+++.+.+.-.+.
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 132 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence 3445555666666666666666666665421 112 2344445555555 66666666666666643222221
Q ss_pred hH---------------HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChH
Q 048812 426 MQ---------------HYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCH----------QNVK 475 (645)
Q Consensus 426 ~~---------------~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~----------g~~~ 475 (645)
.. .+..+...|.+.|++++|...+++. ...|+ ...+..+..++... |+++
T Consensus 133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 133 VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 11 1256678899999999999999886 22233 45677778888766 8899
Q ss_pred HHHHHHHHHHhcCCCCchh---HHHHHHHHHHcCCch
Q 048812 476 LAEHAFKHLTETDPLNDGA---HVLLANIYAKAGRLD 509 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~---y~~l~~~~~~~g~~~ 509 (645)
+|...++++++..|+++.. +..+..++...++++
T Consensus 213 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 213 RAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988643 334555554444433
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=3.3e-09 Score=93.29 Aligned_cols=140 Identities=5% Similarity=-0.018 Sum_probs=101.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcC
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAG 440 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 440 (645)
..+...|++++|++.+++.... .|+ ...+..+...|...|++++|.+.|++..+ +.| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 3444566777777777766542 333 34455667777788888888888887774 455 4677778888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 441 HLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHA-FKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 441 ~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
++++|...|++. .+.| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888887775 4445 567888888888888888765554 588999999998888888888877774
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.83 E-value=1.1e-07 Score=93.45 Aligned_cols=172 Identities=10% Similarity=-0.012 Sum_probs=138.6
Q ss_pred HHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 048812 342 LAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVY 420 (645)
Q Consensus 342 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 420 (645)
...+.+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 3334444444456667788888999999999999999999885 44 467888889999999999999999998874
Q ss_pred CCCCChHHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhH
Q 048812 421 NIKPKMQHYGCM-VDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN--DGAH 495 (645)
Q Consensus 421 ~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~y 495 (645)
..|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 35664433332 33366778888888888776 3334 67899999999999999999999999999999987 7899
Q ss_pred HHHHHHHHHcCCchHHHHHHHHH
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
..|+.+|...|+.++|...+++.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999998887764
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.80 E-value=7.9e-07 Score=86.51 Aligned_cols=248 Identities=11% Similarity=0.072 Sum_probs=158.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH
Q 048812 165 ISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI 244 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 244 (645)
|+-..-.|++..++.-...+.. ..+ ......+.+++...|++..+ ..-.|.......+ ..|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~l-a~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLY-VQFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHH-HHHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHH-HHHhccc--
Confidence 4445556888888774333221 122 22333455777777766532 1112332233333 2333333
Q ss_pred HHHHHHHcccCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhH
Q 048812 245 GEAQKLLGRYEID-EVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHG 323 (645)
Q Consensus 245 ~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g 323 (645)
|...|+++... .++..++..+..++...|++++|++++.+...++..
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~------------------------------ 132 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA------------------------------ 132 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS------------------------------
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------------------------
Confidence 66667664332 355666677888899999999999998876544320
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHH
Q 048812 324 IWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-----DQVTFIALLS 398 (645)
Q Consensus 324 ~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~t~~~ll~ 398 (645)
..+...+-.++..|.+.|+.+.|.+.+++|.+. .| +..+...+..
T Consensus 133 ----------------------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 133 ----------------------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp ----------------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred ----------------------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH
Confidence 023455667888999999999999999999874 66 3566666665
Q ss_pred HHh--c--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CC-CHHHHH
Q 048812 399 ACS--H--GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PI----------PP-DVSIWS 462 (645)
Q Consensus 399 a~~--~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p-d~~~~~ 462 (645)
++. . .++.++|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+ .. .| |+.+..
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La 259 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA 259 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence 532 2 34899999999998753 344333344444788899999999988764 21 24 555665
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
.+|......|+ .|.++++++.+..|+++.+
T Consensus 260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 66666666776 7889999999999988643
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.79 E-value=7.3e-07 Score=86.75 Aligned_cols=165 Identities=10% Similarity=0.040 Sum_probs=130.0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----Ch
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-----KM 426 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~ 426 (645)
++..++..+..++...|++++|++++.+-+..|..+ +...+..++..+.+.|+++.|.+.++.|.+ ..| +-
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d 174 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDN 174 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccch
Confidence 344555678889999999999999999987765423 456777888999999999999999999985 467 34
Q ss_pred HHHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CCCC
Q 048812 427 QHYGCMVDL--LGRAG--HLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTET----------DPLN 491 (645)
Q Consensus 427 ~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----------~p~~ 491 (645)
.+..-|..+ ....| ++.+|..+|+++ ...|+..+-..|++++.+.|++++|++.++.+.+. +|++
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 555555555 33334 999999999998 44466444455666899999999999999988876 4888
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 492 DGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 492 ~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+.+...++.++...|+ +|.++++++++..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 8888888888888887 8999999998754
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=4.9e-08 Score=85.65 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=101.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 048812 397 LSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQN 473 (645)
Q Consensus 397 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~ 473 (645)
...+...|++++|+..++.... ..|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3456677899999999987663 4554 455667899999999999999999987 4445 67899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHH-HHHHHh
Q 048812 474 VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI-RMKLRD 520 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~-~~~m~~ 520 (645)
+++|+..|+++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 466654
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=5.6e-07 Score=89.36 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----Ch
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETG---TKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP----KM 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~ 426 (645)
.+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.+.|++..+.+.-.. ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 467778888999999999999998876431 1122 3567788888888 999999999998875321111 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh----
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PI---PPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA---- 494 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~---- 494 (645)
.++..+...|.+.|++++|.+.+++. .+ .++ ...+..+...+...|++++|...+++.+ +.|.....
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 67888899999999999999998876 11 122 2356667777888899999999999999 88865432
Q ss_pred -HHHHHHHHHHcCCchHHHH
Q 048812 495 -HVLLANIYAKAGRLDDMSR 513 (645)
Q Consensus 495 -y~~l~~~~~~~g~~~~a~~ 513 (645)
...++..| ..|+.+.+.+
T Consensus 235 ~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHH
Confidence 33455555 5666655554
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.2e-07 Score=103.15 Aligned_cols=168 Identities=14% Similarity=0.019 Sum_probs=140.3
Q ss_pred CCCCcHHHHHHHHhhcC-----------cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048812 335 ISIDNIELAYDLFSEIS-----------EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG 403 (645)
Q Consensus 335 ~~~~~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 403 (645)
+..++.++|.+.|+... ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45568888988888765 3466789999999999999999999999998752 23577888888899999
Q ss_pred CcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 048812 404 GLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 404 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~ 480 (645)
|++++|.+.|++..+ +.| +...|..+..+|.+.|++++ .+.+++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999885 466 47888899999999999999 9888876 3444 677899999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 481 FKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
++++++++|.+..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999877665
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=1.1e-06 Score=82.07 Aligned_cols=171 Identities=10% Similarity=-0.027 Sum_probs=140.7
Q ss_pred HHHHHhhcC-cCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 048812 343 AYDLFSEIS-EKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG----LVDEGYDFLSKKS 417 (645)
Q Consensus 343 A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 417 (645)
|.+.|.... ..+..++..+...|...+++++|+.+|++..+.| +...+..+-..|.. + +.++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 2578889999999999999999999999998875 56677777777877 6 8999999999987
Q ss_pred HhcCCCCChHHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 048812 418 RVYNIKPKMQHYGCMVDLLGR----AGHLEESANFITSM-PIPPD---VSIWSSLLRACRC----HQNVKLAEHAFKHLT 485 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~pd---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~ 485 (645)
+ . -+...+..|..+|.. .+++++|.+++++. ...|+ +..+..|...|.. .++.++|...|++..
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4 2 357778888888877 88999999999987 44443 7888899999988 889999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHc-C-----CchHHHHHHHHHHhCC
Q 048812 486 ETDPLNDGAHVLLANIYAKA-G-----RLDDMSRIRMKLRDMG 522 (645)
Q Consensus 486 ~~~p~~~~~y~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 522 (645)
+. |.++..+..|..+|... | ++++|...+++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98 66677899999999865 3 8999999999988776
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=3.2e-07 Score=82.75 Aligned_cols=159 Identities=7% Similarity=0.007 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
..+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...++...+. .|+...+..+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~ 81 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAK 81 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHH
Confidence 34556777888999999999999987764 34 4677888888999999999999999988753 343333322221
Q ss_pred H-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHcCCch
Q 048812 435 L-LGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN--DGAHVLLANIYAKAGRLD 509 (645)
Q Consensus 435 ~-~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~y~~l~~~~~~~g~~~ 509 (645)
. +...+...+|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.. +..+..++.+|...|+.+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 2 22222333456666665 3345 57889999999999999999999999999999875 558999999999999999
Q ss_pred HHHHHHHHHH
Q 048812 510 DMSRIRMKLR 519 (645)
Q Consensus 510 ~a~~~~~~m~ 519 (645)
+|...+++..
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999988754
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.66 E-value=2.6e-07 Score=100.46 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=124.2
Q ss_pred CcHHHHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHH
Q 048812 338 DNIELAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFL 413 (645)
Q Consensus 338 ~~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~ 413 (645)
+++++|...|++... .+...|..+...|...|++++|++.|++..+. .| +..++..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 357788888887654 45788999999999999999999999999875 44 4778888999999999999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 048812 414 SKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCH---QNVKLAEHAFKHLTET 487 (645)
Q Consensus 414 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~ 487 (645)
++..+ +.| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99885 345 4788999999999999999999999886 3334 577889999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 048812 488 DPLNDGAHVLLA 499 (645)
Q Consensus 488 ~p~~~~~y~~l~ 499 (645)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887766
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.65 E-value=7.2e-07 Score=82.93 Aligned_cols=128 Identities=10% Similarity=0.025 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDL 435 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 435 (645)
++.+...|.+.|++++|+..|++..+. .| +...+..+..++...|++++|.+.|++..+ +.|+ ...|..+...
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHH
Confidence 445888999999999999999999985 34 578889999999999999999999999985 4664 7788888888
Q ss_pred HHHcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 436 LGRAGH--LEESANFITSMPIPPDV--SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 436 ~~~~g~--~~~A~~~~~~m~~~pd~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
|...|. .+.+...++... .|+. ..|..+..++...|++++|+..|++++++.|++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 876654 445666666653 3443 344455666777899999999999999999964
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=3.8e-07 Score=77.18 Aligned_cols=99 Identities=10% Similarity=-0.005 Sum_probs=64.0
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 422 IKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 422 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+.|+ ...+......|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4443 345555666666666666666666654 2223 456666666667777777777777777777777776777777
Q ss_pred HHHHHHcCCchHHHHHHHHHHh
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777766654
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=2.7e-07 Score=80.73 Aligned_cols=102 Identities=9% Similarity=-0.032 Sum_probs=88.2
Q ss_pred CCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 048812 421 NIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL 497 (645)
Q Consensus 421 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~ 497 (645)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35564 567777888888999999999988887 3344 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++.+|...|++++|...+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987644
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=1.3e-05 Score=78.71 Aligned_cols=225 Identities=9% Similarity=0.089 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC--CHHHHHHHHcccCCCCC-ChhhHHHHHHHH----Hhc---CCHHH
Q 048812 210 EMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG--KIGEAQKLLGRYEIDEV-DVVLWTTLVSGY----VKS---NERDE 279 (645)
Q Consensus 210 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~~~~~-~~~~~~~li~~~----~~~---g~~~~ 279 (645)
++|.++.+.++..+ +.+..+|+.--..+...| +++++.+.++.+....| +..+|+.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 35555555555554 334445555555555555 66666666665433333 455566544444 333 56777
Q ss_pred HHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHH
Q 048812 280 ARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWT 359 (645)
Q Consensus 280 A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 359 (645)
++++++++.+.+ .+|-.+|+
T Consensus 129 EL~~~~~~l~~~------------------------------------------------------------pkny~aW~ 148 (306)
T 3dra_A 129 EFDILEAMLSSD------------------------------------------------------------PKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHHHC------------------------------------------------------------TTCHHHHH
T ss_pred HHHHHHHHHHhC------------------------------------------------------------CCCHHHHH
Confidence 777777766443 35777888
Q ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------HHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 360 SVIAAYAMAGHAQ--KAIDLFLEMEETGTKPDQVTFIALLSACSHGGL------VDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 360 ~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~------~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
.-.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+. ++++.++++.+.. ..| |...|+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~---~~p~n~SaW~ 224 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV---KCPQNPSTWN 224 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH---HCSSCHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH---hCCCCccHHH
Confidence 8877888888888 999999999987543 66777766666666665 8889998888885 355 577888
Q ss_pred HHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCchhHHHHH
Q 048812 431 CMVDLLGRAGHLEE-SANFITSM-PI----PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TDPLNDGAHVLLA 499 (645)
Q Consensus 431 ~li~~~~~~g~~~~-A~~~~~~m-~~----~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~~~~y~~l~ 499 (645)
-+-.++.+.|+..+ +.++..+. .. ..+...+..+...+.+.|+.++|.++++.+.+ .+|.....|...+
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 88888888887444 55566655 11 34678888888888888999999999999886 7887766655443
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.59 E-value=7.9e-07 Score=98.66 Aligned_cols=191 Identities=15% Similarity=0.083 Sum_probs=147.1
Q ss_pred HHcCCHHHHHHHHcccC--------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCch
Q 048812 239 FKCGKIGEAQKLLGRYE--------IDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309 (645)
Q Consensus 239 ~~~g~~~~A~~~~~~m~--------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~ 309 (645)
...|++++|.+.|++.. ...| +...|..+...|.+.|++++|++.|++..+.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------------ 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV------------------ 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC------------------
Confidence 67899999999998753 2233 66788999999999999999999998765322
Q ss_pred hhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 048812 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP- 388 (645)
Q Consensus 310 ~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 388 (645)
..+...|..+..+|...|++++|++.|++..+. .|
T Consensus 464 ------------------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~ 499 (681)
T 2pzi_A 464 ------------------------------------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPG 499 (681)
T ss_dssp ------------------------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STT
T ss_pred ------------------------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 235678888999999999999999999999885 44
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLL 465 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll 465 (645)
+...+..+..++...|++++ .+.|++..+ +.| +...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 500 ELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSA 575 (681)
T ss_dssp CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHH
Confidence 46788888999999999999 999999885 456 4788999999999999999999999997 56776 45777777
Q ss_pred HHHHhcCC-----hHHHHHHHHHHHhcCCCCchhH
Q 048812 466 RACRCHQN-----VKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 466 ~a~~~~g~-----~~~a~~~~~~~~~~~p~~~~~y 495 (645)
.++...++ .+...++.+.+..+.+.++..+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 576 VTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 77766555 3444455555555555554433
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=2.7e-07 Score=80.61 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=85.9
Q ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 422 IKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 422 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 455 3566777888889999999999998876 3334 778899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+.+|...|++++|...+++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999888664
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=1e-06 Score=95.81 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=101.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHH
Q 048812 368 AGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEES 445 (645)
Q Consensus 368 ~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 445 (645)
.|++++|++.|++..+. .| +...+..+...+...|++++|.+.+++..+ +.|+ ...+..+...|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 46778888888887764 34 366777777888888888888888888774 4553 67778888888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc---CCchHHHHHHHHHHh
Q 048812 446 ANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA---GRLDDMSRIRMKLRD 520 (645)
Q Consensus 446 ~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~---g~~~~a~~~~~~m~~ 520 (645)
.+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 8888775 3333 5667888888888888888888888888888888888888888888888 888888887777655
Q ss_pred CC
Q 048812 521 MG 522 (645)
Q Consensus 521 ~~ 522 (645)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=1.4e-06 Score=80.98 Aligned_cols=122 Identities=11% Similarity=-0.074 Sum_probs=84.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCC
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQN 473 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~ 473 (645)
+...+...|++++|.+.|++. +.|+...|..+...|.+.|++++|.+.+++. .. +.+...|..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 334444555555555555433 2344555555555566666666666555554 11 2356677788888888888
Q ss_pred hHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 474 VKLAEHAFKHLTETDPLND----------------GAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~~----------------~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+++|...++++++..|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887766 788899999999999999999999887654
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.55 E-value=1.1e-06 Score=81.76 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 233 YLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 233 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.+...|.+.|++++|...|++.....| +...|..+...|...|++++|+..|++..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355556666666666666655322233 44555555555555555555555555544
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.54 E-value=4.3e-06 Score=82.91 Aligned_cols=205 Identities=7% Similarity=-0.042 Sum_probs=111.4
Q ss_pred cCChhHHHHHHHHHhhcC--chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC
Q 048812 117 NGYPQEVFAIYLYLVTRT--VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE----GVS 190 (645)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~--~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~----g~~ 190 (645)
.|++++|.+++++..+.. .++...++++.|...|.+ ....|...|++++|++.|.+..+. |-.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 72 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSL 72 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 345566666666654421 222224566666665543 355677778888887777766542 100
Q ss_pred CC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHH
Q 048812 191 PD-EVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVS 269 (645)
Q Consensus 191 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~ 269 (645)
+. ..+|..+...+...|++++|...+...++. +.+.|+... -..+|+.+..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~-------------~a~~~~~lg~ 124 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVENGTPDT-------------AAMALDRAGK 124 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTTTCHHH-------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHcCCHHH-------------HHHHHHHHHH
Confidence 00 124455555555555555555555544432 111111111 1234555666
Q ss_pred HHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhh
Q 048812 270 GYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSE 349 (645)
Q Consensus 270 ~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~ 349 (645)
.|.. |++++|+..|++... ++..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~--------------------------------------------------------~~~~ 147 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAA--------------------------------------------------------VFEN 147 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHH--------------------------------------------------------HHHH
T ss_pred HHHc-CCHHHHHHHHHHHHH--------------------------------------------------------HHHh
Confidence 6666 777777777665431 1111
Q ss_pred cCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 350 ISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKPD-QVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 350 ~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
... ....+|+.+...|...|++++|+..|++.... +..++ ..++..+..++...|++++|...|++..
T Consensus 148 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 000 01345777888888888999988888887652 11111 1245555556666677777777777655
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.53 E-value=3.8e-06 Score=79.06 Aligned_cols=63 Identities=17% Similarity=0.087 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 431 CMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 431 ~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
.+...|.+.|++++|...++++ ...|+ ...+..+..++.+.|+.++|...++.+....|++..
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 4567789999999999999886 33343 256888999999999999999999999998887653
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.53 E-value=9.3e-07 Score=74.76 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRAC 468 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 468 (645)
.+......+.+.|++++|.+.|++..+ +.| +...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 444455555556666666666655553 233 3555566666666666666666666554 2233 567888899999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
...|++++|...|+++++++|+++.++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998887776654
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.50 E-value=2.5e-06 Score=83.76 Aligned_cols=64 Identities=11% Similarity=0.008 Sum_probs=34.1
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 225 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
+.+...+..+...+.+.|++++|...|++.....| +...+..+...+.+.|++++|...|++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 33444444555555556666666666555322233 44455555555666666666666555544
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=5.3e-06 Score=76.97 Aligned_cols=129 Identities=9% Similarity=-0.066 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVD 434 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 434 (645)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|.+.|++..+. .| +...|..+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 44566777888999999999999876 4678889999999999999999999999998853 34 5778889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-----------------DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-----------------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
+|...|++++|.+.+++. ...| +...|..+..++...|++++|...+++++++.|.+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999998876 2222 23688889999999999999999999999999976
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=7.1e-06 Score=80.66 Aligned_cols=162 Identities=6% Similarity=-0.089 Sum_probs=124.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHH
Q 048812 359 TSVIAAYAMAGHAQKAIDLFLEMEETG-TKPDQV----TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHY 429 (645)
Q Consensus 359 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~ 429 (645)
...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|.+.|+++.+...-.++ ...|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334678889999999999999988742 223322 3335666777888999999999999852222233 3478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chh
Q 048812 430 GCMVDLLGRAGHLEESANFITSMP-----I---PPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN------DGA 494 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~-----~---~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 494 (645)
+.+...|...|++++|...+++.- . .+. ..+|..+...|...|++++|...+++++++.+.. +.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999999888751 1 122 3378889999999999999999999999855322 568
Q ss_pred HHHHHHHHHHcCC-chHHHHHHHHHHh
Q 048812 495 HVLLANIYAKAGR-LDDMSRIRMKLRD 520 (645)
Q Consensus 495 y~~l~~~~~~~g~-~~~a~~~~~~m~~ 520 (645)
|..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999996 5999998887643
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.47 E-value=6.2e-06 Score=81.13 Aligned_cols=165 Identities=6% Similarity=-0.107 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-Q----VTFIALLSACSHGGLVDEGYDFLSKKSRVYNI--KPK-- 425 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-- 425 (645)
...+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|.+.+++..+...- .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34566678888999999999999998887532211 1 22344556678889999999999988742211 111
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM----PIPPD-----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL------ 490 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------ 490 (645)
...|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...+++++++.+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 458899999999999999999998775 11222 258889999999999999999999999885432
Q ss_pred CchhHHHHHHHHHHcCCchHH-HHHHHHHH
Q 048812 491 NDGAHVLLANIYAKAGRLDDM-SRIRMKLR 519 (645)
Q Consensus 491 ~~~~y~~l~~~~~~~g~~~~a-~~~~~~m~ 519 (645)
-..+|..++.+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 146788999999999999999 77677654
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=2e-06 Score=74.35 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=84.5
Q ss_pred CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 422 IKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 422 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4453 455666777888889999999888876 3334 677888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 048812 499 ANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 499 ~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+.+|...|++++|.+.+++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988663
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=3.6e-06 Score=70.06 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
..+..+...+.+.|++++|..+++++ . .+.+..+|..+...+...|++++|...++++++..|.++..+..+..++..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 34444444455555555555554443 1 123566777888888888999999999999999999888888888777765
Q ss_pred cC
Q 048812 505 AG 506 (645)
Q Consensus 505 ~g 506 (645)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 43
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.44 E-value=1.3e-06 Score=78.63 Aligned_cols=146 Identities=11% Similarity=-0.010 Sum_probs=109.5
Q ss_pred ccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHH-HhcCCChHHHHH
Q 048812 139 KCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISA-RTKLRDLEMGKN 214 (645)
Q Consensus 139 ~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~ 214 (645)
+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+...+...... +...+....+.+
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccchHHH
Confidence 45666777777776653 46778999999999999999999999998765 3444333222111 122223345678
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 048812 215 LHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD---VVLWTTLVSGYVKSNERDEARRLFDEM 287 (645)
Q Consensus 215 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 287 (645)
.+..+++.. +.+...+..+...|...|++++|...|++.....|+ ...|..+...+...|+.++|...|++.
T Consensus 96 ~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 96 RLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 888888775 556888999999999999999999999986555553 558999999999999999999999864
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=4.6e-06 Score=73.70 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH--HHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL--LANI 501 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~--l~~~ 501 (645)
...+..+...+...|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|.++..+.. ++..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444444444555555555544443 11 2356677888888888999999999999999999988877744 4444
Q ss_pred HHHcCCchHHHHHHHHHHh
Q 048812 502 YAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 502 ~~~~g~~~~a~~~~~~m~~ 520 (645)
+...|++++|.+.++....
T Consensus 127 ~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchHH
Confidence 7888999999998877643
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=5.4e-06 Score=69.61 Aligned_cols=84 Identities=14% Similarity=0.029 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
...+..+...+...|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|.++..+..+..++.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 334444444444555555555544443 11 2346677788888888999999999999999999988888888988888
Q ss_pred HcCCch
Q 048812 504 KAGRLD 509 (645)
Q Consensus 504 ~~g~~~ 509 (645)
..|+++
T Consensus 126 ~~~~~~ 131 (131)
T 2vyi_A 126 KLREAP 131 (131)
T ss_dssp HHTTCC
T ss_pred HHhcCC
Confidence 888753
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.40 E-value=1.8e-05 Score=77.64 Aligned_cols=214 Identities=13% Similarity=0.106 Sum_probs=160.8
Q ss_pred CHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcC--CHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhccccc
Q 048812 243 KIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSN--ERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCASIGA 319 (645)
Q Consensus 243 ~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~ 319 (645)
.-++|.++++.+....| +...|+.--..+...| +++++++.++.+...++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--------------------------- 100 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--------------------------- 100 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT---------------------------
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc---------------------------
Confidence 34577777777544455 5567888888888888 88888888887764332
Q ss_pred hhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCCCHHH
Q 048812 320 LYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAY----AMA---GHAQKAIDLFLEMEETGTKPDQVT 392 (645)
Q Consensus 320 l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~pd~~t 392 (645)
.+..+|+.--..+ ... +++++++++++++.+.. +-|..+
T Consensus 101 ---------------------------------k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~a 146 (306)
T 3dra_A 101 ---------------------------------KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHV 146 (306)
T ss_dssp ---------------------------------TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---------------------------------ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 3444555544444 444 78999999999999863 336788
Q ss_pred HHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCC------HHHHHHHHHhC-CCC-CCHHHH
Q 048812 393 FIALLSACSHGGLVD--EGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGH------LEESANFITSM-PIP-PDVSIW 461 (645)
Q Consensus 393 ~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~m-~~~-pd~~~~ 461 (645)
|..-...+.+.|..+ ++.++++++.+. .| +-..|+.-..++.+.|+ ++++++.++++ ... -|...|
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 877777777788887 999999999953 44 45666665566666666 89999988876 333 478899
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhcC---CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 462 SSLLRACRCHQNV-KLAEHAFKHLTETD---PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 462 ~~ll~a~~~~g~~-~~a~~~~~~~~~~~---p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+-+-..+.+.|+. +......+++.+++ |.++.+...++.+|.+.|+.++|.++++.+.+
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9998888888874 44667888887776 78888999999999999999999999999875
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=3.5e-06 Score=70.92 Aligned_cols=96 Identities=14% Similarity=-0.050 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|.++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566677777888888888887765 3333 57788888888999999999999999999999999889999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 048812 504 KAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 504 ~~g~~~~a~~~~~~m~~~ 521 (645)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999998887653
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.37 E-value=2.6e-06 Score=85.64 Aligned_cols=143 Identities=11% Similarity=0.042 Sum_probs=102.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 432 (645)
+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+.+. .| ....|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~----------~~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA----------QALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH----------HHHHHHHHHHH
Confidence 44566677777777777777777777776642 221000 00111000 01 13567777
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..+..++...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888887776 3334 677899999999999999999999999999999999999999999999999998
Q ss_pred H-HHHHHHHH
Q 048812 511 M-SRIRMKLR 519 (645)
Q Consensus 511 a-~~~~~~m~ 519 (645)
| ..+++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8 44555553
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=1.1e-06 Score=85.96 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=98.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM-QHYGC 431 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~ 431 (645)
+...|..+...|...|++++|+..+++..+. .| +...+..+..++...|++++|...|+...+. .|+. ..+..
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~ 111 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGD 111 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCS
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHH
Confidence 4556777777777778888888877777664 33 3566677777777788888888777776642 2321 01111
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc-CCchH
Q 048812 432 MVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA-GRLDD 510 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~-g~~~~ 510 (645)
.+....+..+...... .......++......+ ..+ ..|+.++|.+.++++++++|.+......+...+.+. +++++
T Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 188 (281)
T 2c2l_A 112 DIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188 (281)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHH
Confidence 1111111111111111 2222333444444333 333 268899999999999999998877777777777776 77889
Q ss_pred HHHHHHHHHhC
Q 048812 511 MSRIRMKLRDM 521 (645)
Q Consensus 511 a~~~~~~m~~~ 521 (645)
|.+++.+..+.
T Consensus 189 a~~~f~~a~~~ 199 (281)
T 2c2l_A 189 MDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHSSCT
T ss_pred HHHHHHhhhcc
Confidence 99999887653
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=3.3e-06 Score=71.35 Aligned_cols=119 Identities=8% Similarity=-0.028 Sum_probs=80.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+++++..+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~---------- 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---E---------- 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---C----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---C----------
Confidence 34556666666667777777777776666531 224555555556666666666666666555531 1
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCC
Q 048812 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGR 507 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~ 507 (645)
+.+...|..+...+...|++++|...++++++.+|.+...+..+..++...|+
T Consensus 81 ---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 ---------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ---------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 12456677777788888888888889988888888888888888888876653
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.37 E-value=2.2e-05 Score=83.18 Aligned_cols=168 Identities=8% Similarity=-0.072 Sum_probs=111.1
Q ss_pred HHHHHHhhcCc---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 342 LAYDLFSEISE---KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 342 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
.+..+|++... .+...|-..+.-+.+.|+.++|..+|++.... |+...+......+...+. +++.+.+
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~------~~~~l~~ 267 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA------VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH------HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH------HHHHHHH
Confidence 34455554443 45678888888889999999999999999987 543322221111112121 1233322
Q ss_pred hcC--------CCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HhcCChHHHHHHHHHHH
Q 048812 419 VYN--------IKP---KMQHYGCMVDLLGRAGHLEESANFITSMPIP-PDVSIWSSLLRAC-RCHQNVKLAEHAFKHLT 485 (645)
Q Consensus 419 ~~~--------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-pd~~~~~~ll~a~-~~~g~~~~a~~~~~~~~ 485 (645)
.+- ..+ ....|-..++.+.+.|.++.|.++|++...+ ++..+|......- ...++.+.|..+|+.++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 210 011 1356777788888889999999999988322 2334454322222 22347999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 486 ETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 486 ~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
+..|+++..+...++...+.|+.+.|..+++..
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 988988777777888888999999999999886
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.33 E-value=0.00015 Score=76.59 Aligned_cols=124 Identities=13% Similarity=0.110 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIA--LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
..|-..+..+.+.|..+.|..+|++. .. ..++...|.. .+... ..++.+.|..+|+...+.++- +...+...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~~~--~~~~~~~yi 361 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKHPD--STLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCCC--CHHHHHHHH
Confidence 56777777777788899999999988 32 1234444432 22221 234689999999998875432 244566778
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 434 DLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
+...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..+
T Consensus 362 d~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999984 3577888888887888999988888888875
No 132
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.28 E-value=6.6e-07 Score=82.38 Aligned_cols=95 Identities=9% Similarity=-0.042 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAK 504 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~ 504 (645)
..|..+..+|.+.|++++|...+++. ... .+...|..+..++...|++++|...|+++++++|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777788888888888888888776 223 3677888999999999999999999999999999999999999999988
Q ss_pred cCCchHHH-HHHHHHHhC
Q 048812 505 AGRLDDMS-RIRMKLRDM 521 (645)
Q Consensus 505 ~g~~~~a~-~~~~~m~~~ 521 (645)
.++.+++. ..++.|..+
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88877776 455555443
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.28 E-value=3.2e-06 Score=76.04 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=70.6
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCh--HH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRA-CRCHQNV--KL 476 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a-~~~~g~~--~~ 476 (645)
.|++++|...++...+. .| +...|..+...|...|++++|.+.+++. ... .+...|..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34444555555444432 22 3445555555555555555555555544 111 245566666666 6667776 77
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 477 AEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 477 a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|...++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7788888777777777777777777888888888888777776543
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.27 E-value=8e-05 Score=73.01 Aligned_cols=130 Identities=12% Similarity=-0.025 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----CCCCC-hH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVY----NIKPK-MQ 427 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~ 427 (645)
+..+...+...|++++|+..|++....... +| ..+++.+..+|...|++++|..+|+++.+.. +..|. ..
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 344666677778999999999998874322 23 2368888889999999999999999887422 11222 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHhc
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-------PIPPD-VSIWSSLLRACRCHQN-VKLAEHAFKHLTET 487 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd-~~~~~~ll~a~~~~g~-~~~a~~~~~~~~~~ 487 (645)
+|..+...|.+.|++++|.+.+++. +..+. ..+|..+..++...|+ .++|...+++++++
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7888999999999999999988765 22222 5688889999999995 59999999998873
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.26 E-value=6e-05 Score=72.32 Aligned_cols=139 Identities=9% Similarity=-0.087 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCch
Q 048812 230 LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEF 309 (645)
Q Consensus 230 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~ 309 (645)
+.-.+..++...|++++|.++|+.+....|+......+...+.+.+++++|+..|+.........
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~--------------- 168 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF--------------- 168 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH---------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc---------------
Confidence 44556778888999999999999966566744466677778889999999999997543221000
Q ss_pred hhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 048812 310 KYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD 389 (645)
Q Consensus 310 ~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 389 (645)
.....+..+..++...|++++|+..|++.......|.
T Consensus 169 -------------------------------------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 169 -------------------------------------------LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred -------------------------------------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc
Confidence 0122456678889999999999999999875433264
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 390 --QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 390 --~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
.........++.+.|+.++|...|+++.. ..|+...+
T Consensus 206 ~~~da~~~~glaL~~lGr~deA~~~l~~a~a---~~P~~~~~ 244 (282)
T 4f3v_A 206 CARAIAWYLAMARRSQGNESAAVALLEWLQT---THPEPKVA 244 (282)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSCCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHH
Confidence 33556667788899999999999999885 35553333
No 136
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=0.00047 Score=68.38 Aligned_cols=220 Identities=12% Similarity=0.139 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC-CHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhc-C-CHHHHHHHHHh
Q 048812 211 MGKNLHLFLEESTMKISGSLLNYLVDMYFKCG-KIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKS-N-ERDEARRLFDE 286 (645)
Q Consensus 211 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 286 (645)
+|.++.+.++..+ +-+..+|+.--..+...| .++++.+.++.+....| +..+|+.-...+.+. + +++++++++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4445555555443 333444444444444455 36666666665433333 556676666555554 5 66777777777
Q ss_pred cccCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHH
Q 048812 287 MVERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYA 366 (645)
Q Consensus 287 m~~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~ 366 (645)
+.+.+. +|-.+|+--.-.+.
T Consensus 151 ~L~~dp------------------------------------------------------------kNy~AW~~R~wvl~ 170 (349)
T 3q7a_A 151 SLLPDP------------------------------------------------------------KNYHTWAYLHWLYS 170 (349)
T ss_dssp HTSSCT------------------------------------------------------------TCHHHHHHHHHHHH
T ss_pred HHHhCC------------------------------------------------------------CCHHHHHHHHHHHH
Confidence 765543 34444444333333
Q ss_pred HcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-------HHHHHHHHHHhHHhcCCCC-ChHHHH
Q 048812 367 MAGHAQ--------KAIDLFLEMEETGTKPDQVTFIALLSACSHGGL-------VDEGYDFLSKKSRVYNIKP-KMQHYG 430 (645)
Q Consensus 367 ~~g~~~--------~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-~~~~~~ 430 (645)
+.|.++ ++++.++++.+.... |...|+.....+.+.+. +++++++++++.. +.| |...|+
T Consensus 171 ~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~ 246 (349)
T 3q7a_A 171 HFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWN 246 (349)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 333333 777777777775332 56666666666666654 6777777777664 345 456666
Q ss_pred HHHHHHHHcCCH--------------------HHHHHHHHhCC-C-------CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048812 431 CMVDLLGRAGHL--------------------EESANFITSMP-I-------PPDVSIWSSLLRACRCHQNVKLAEHAFK 482 (645)
Q Consensus 431 ~li~~~~~~g~~--------------------~~A~~~~~~m~-~-------~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 482 (645)
-+-.++.+.|+- .+..++..++. . .+....+..|...|...|+.++|.++++
T Consensus 247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666666543 33333433331 1 2456667777777777777777777777
Q ss_pred HHH-hcCCCCchhH
Q 048812 483 HLT-ETDPLNDGAH 495 (645)
Q Consensus 483 ~~~-~~~p~~~~~y 495 (645)
.+. +.+|-....+
T Consensus 327 ~l~~~~dpir~~yw 340 (349)
T 3q7a_A 327 KLSSEYDQMRAGYW 340 (349)
T ss_dssp HHHHTTCGGGHHHH
T ss_pred HHHhhhChHHHHHH
Confidence 775 4566544433
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.26 E-value=2.8e-05 Score=76.31 Aligned_cols=127 Identities=12% Similarity=-0.012 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHH
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGT---KPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-----MQHY 429 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~ 429 (645)
.+...+...|++++|+..|++..+... .+. ..+++.+...|...|++++|..+|++..+.....|+ ..+|
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 355556667788888888777764321 112 346777777777888888888888777632112222 2567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 048812 430 GCMVDLLGRAGHLEESANFITSM-------PIPP-DVSIWSSLLRACRCHQNVKLA-EHAFKHLTE 486 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m-------~~~p-d~~~~~~ll~a~~~~g~~~~a-~~~~~~~~~ 486 (645)
..+...|.+.|++++|.+.+++. +... -..+|..+...+...|+.++| ...+++++.
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 77778888888888888877764 1111 156778888888889999988 777888776
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=1.7e-05 Score=72.70 Aligned_cols=153 Identities=10% Similarity=-0.028 Sum_probs=83.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHHcCCH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY---NIKP-KMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~ 442 (645)
..|++++|.++++..... ......++..+...+...|++++|...+++..+.. +..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566665533333221 11224455555555556666666666665554311 1111 134555666666666666
Q ss_pred HHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCc----hhHHHHHHHHHHcCC
Q 048812 443 EESANFITSM-P---IPP-D----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDP--LND----GAHVLLANIYAKAGR 507 (645)
Q Consensus 443 ~~A~~~~~~m-~---~~p-d----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p--~~~----~~y~~l~~~~~~~g~ 507 (645)
++|.+.+++. . ..+ + ..++..+...+...|++++|...+++.+++.+ .++ .++..++.+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666665543 1 011 2 23466666777777888888888777776321 121 234677778888888
Q ss_pred chHHHHHHHHHHh
Q 048812 508 LDDMSRIRMKLRD 520 (645)
Q Consensus 508 ~~~a~~~~~~m~~ 520 (645)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776643
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=1.1e-05 Score=66.90 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
...+..+...+.+.|++++|.+.++++ . .+.+..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 466777888888888888888888876 2 23467889999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 048812 504 KAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 504 ~~g~~~~a~~~~~~m~~~ 521 (645)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=1.2e-05 Score=68.47 Aligned_cols=97 Identities=13% Similarity=0.007 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++++|.++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777777777788888887777765 2223 5678888888888899999999999999999999888899999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 048812 503 AKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~~ 521 (645)
...|++++|...+++..+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988887653
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=0.0001 Score=67.39 Aligned_cols=154 Identities=18% Similarity=0.087 Sum_probs=88.0
Q ss_pred HHcCCHHHHHH---HHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcccCCchhHHHHHHhhhccCCchhhhhhc
Q 048812 239 FKCGKIGEAQK---LLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMVERNLISWTLMISGMLNQDAEFKYKSCA 315 (645)
Q Consensus 239 ~~~g~~~~A~~---~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~t~~~ll~~~~~~~~~~~~~a~~ 315 (645)
...|++++|.+ .+.. .+.....++..+...+...|++++|...|++...
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------------------------- 54 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQ-------------------------- 54 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------------------------
Confidence 34577777777 5543 2223456677777778888888888877765431
Q ss_pred cccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCc--CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-
Q 048812 316 SIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISE--KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEET----GTKP- 388 (645)
Q Consensus 316 ~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 388 (645)
++..... ....+++.+...|...|++++|+..|++.... +-.|
T Consensus 55 ------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 55 ------------------------------QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp ------------------------------HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred ------------------------------HHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 1111111 13456777888888899999999888886643 2122
Q ss_pred -CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 048812 389 -DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK----MQHYGCMVDLLGRAGHLEESANFIT 450 (645)
Q Consensus 389 -d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 450 (645)
....+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.++
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1344666667777788888888877766532111111 1223444444555555555544444
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=5e-06 Score=69.58 Aligned_cols=95 Identities=17% Similarity=0.022 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 505 (645)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999998887 3344 6788999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 048812 506 GRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 506 g~~~~a~~~~~~m~~~~ 522 (645)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999886543
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=6.4e-06 Score=67.07 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPL--NDGAHVLLANI 501 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~y~~l~~~ 501 (645)
...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445556666677777777777777665 22 235667788888888888888888888888888888 88888888888
Q ss_pred HHHc-CCchHHHHHHHHHHhCC
Q 048812 502 YAKA-GRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 502 ~~~~-g~~~~a~~~~~~m~~~~ 522 (645)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888886644
No 144
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.21 E-value=0.00011 Score=68.08 Aligned_cols=126 Identities=19% Similarity=0.134 Sum_probs=92.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCC----ChHHHHHHHHHHHHhCCCCchhHH
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLR----DLEMGKNLHLFLEESTMKISGSLL 231 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~ 231 (645)
-+..++..|...|...+++++|++.|++..+.| +...+..+-..+.. + ++++|.+.+....+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 466778888888888888888888888888765 55666666666766 6 7888888888887765 45667
Q ss_pred HHHHHHHHH----cCCHHHHHHHHcccCCCCCC---hhhHHHHHHHHHh----cCCHHHHHHHHHhcc
Q 048812 232 NYLVDMYFK----CGKIGEAQKLLGRYEIDEVD---VVLWTTLVSGYVK----SNERDEARRLFDEMV 288 (645)
Q Consensus 232 ~~li~~y~~----~g~~~~A~~~~~~m~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 288 (645)
..|..+|.. .+++++|.+.|++.....++ ..++..|...|.. .+++++|+..|++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 777777776 77888888888874333332 5677777777777 667777777776654
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=1.2e-05 Score=66.07 Aligned_cols=91 Identities=9% Similarity=-0.021 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM-PIP-PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAG 506 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g 506 (645)
+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|...++++++..|.++..+..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444444444444444443 111 234444444455555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHH
Q 048812 507 RLDDMSRIRMKLR 519 (645)
Q Consensus 507 ~~~~a~~~~~~m~ 519 (645)
++++|.+.+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555443
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=1e-05 Score=71.72 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLR 466 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~ 466 (645)
...+..+...+...|++++|.+.|++..+ +.| +...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455555566666666666666666553 233 3455555555555556666555555554 2222 3445555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
++...|++++|...|+++++++|+++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 55555555566655555555555555433
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.19 E-value=3.4e-05 Score=74.01 Aligned_cols=182 Identities=12% Similarity=0.015 Sum_probs=139.0
Q ss_pred CCCcHHHHHHHHhhcCc---CChhHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------
Q 048812 336 SIDNIELAYDLFSEISE---KNVYLWTSV-------IAAYAMAGHAQKAIDLFLEMEETGTKPD---------------- 389 (645)
Q Consensus 336 ~~~~~~~A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~pd---------------- 389 (645)
...+...|.+.|.+... .....|+.+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45689999999998765 346789888 5666666667777666655443 3332
Q ss_pred ------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----H
Q 048812 390 ------QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDV----S 459 (645)
Q Consensus 390 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~----~ 459 (645)
......+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234456678889999999999988773 3565436666777899999999999999977544433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 460 IWSSLLRACRCHQNVKLAEHAFKHLTETD--PL-NDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 460 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~-~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
.+..|..++...|++++|+..|++..... |. .+.....+..++.+.|+.++|..+++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67888899999999999999999998633 54 44577889999999999999999999997743
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.19 E-value=1.6e-05 Score=71.27 Aligned_cols=126 Identities=6% Similarity=0.063 Sum_probs=98.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHH-HHHcCCH-
Q 048812 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDL-LGRAGHL- 442 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~- 442 (645)
...|++++|+..|++..... +.+...+..+...+...|++++|...|++..+. .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45688889999998887752 335778888888999999999999999988853 34 46777788888 7788998
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 443 -EESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 443 -~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
++|...+++. ...| +...|..+...+...|++++|...++++++..|.++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998876 3334 577888899999999999999999999999999876543
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.18 E-value=3.6e-05 Score=63.03 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=66.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRAC 468 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 468 (645)
.+..+...+...|++++|.+.|+...+. .| +...+..+...+.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3344444444555555555555554431 22 3444555555555566666666555554 2223 566777888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
...|++++|...++++++.+|.++..+..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888899999999999888888877766665543
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.00012 Score=72.28 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=80.0
Q ss_pred CChhHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhH
Q 048812 353 KNVYLWTSVIAAYAMAGH-AQKAIDLFLEMEETGTKPDQVTFIALLSACSHG--------------GLVDEGYDFLSKKS 417 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~ 417 (645)
+|-.+|+--.-.+...|. ++++++.+.++++..+. |...|+.....+.+. +.++++.+++....
T Consensus 142 rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai 220 (331)
T 3dss_A 142 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 220 (331)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHH
Confidence 455556655555556666 46777777777665322 444554443333332 44666777776666
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHH
Q 048812 418 RVYNIKP-KMQHYGCMVDLLGRA-----------GHLEESANFITSM-PIPPDVSIWSSLLRA-----CRCHQNVKLAEH 479 (645)
Q Consensus 418 ~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~pd~~~~~~ll~a-----~~~~g~~~~a~~ 479 (645)
. +.| |...|+-+-..+.+. +.++++++.++++ ...||. .|..+-.+ ....+..++...
T Consensus 221 ~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~ 296 (331)
T 3dss_A 221 F---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQ 296 (331)
T ss_dssp H---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred H---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHH
Confidence 4 344 345554444444433 3466666666665 444553 34322221 123466677778
Q ss_pred HHHHHHhcCCCCchhHHHHHHHH
Q 048812 480 AFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 480 ~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
.+.++.+++|...+-|.-|..-+
T Consensus 297 ~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 297 YFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhCcchhhHHHHHHHHH
Confidence 88888888887766666554433
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=3.2e-05 Score=66.57 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=66.8
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+...|..+...+...|++++|+..|++..+. .|+... ....+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchH--------------------------------HHHHHHHHH
Confidence 4455555556666666666666666665542 343100 023334444
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
..|...|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|.++..+..+..+.
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4444444454444444433 1122 4566777777788888888888888888888888776666555554
No 152
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.17 E-value=1.5e-05 Score=69.52 Aligned_cols=104 Identities=8% Similarity=0.000 Sum_probs=85.5
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 048812 386 TKPD-QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIW 461 (645)
Q Consensus 386 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 461 (645)
+.|+ ...+..+...+...|++++|...|+.+.+ +.| +...|..+..+|.+.|++++|.+.|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3454 45677777888889999999999998885 456 4778888999999999999999998886 3444 56788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
..+..++...|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999998753
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.16 E-value=1.5e-05 Score=67.15 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4677788888899999999999988886 4444 6788999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 048812 503 AKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~~ 521 (645)
...|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988663
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=3e-05 Score=64.88 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PI-PPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY 502 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~ 502 (645)
+...+..+...+...|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3566777888888899999999888876 22 346788999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 048812 503 AKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~~ 521 (645)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.15 E-value=4.6e-05 Score=67.08 Aligned_cols=127 Identities=9% Similarity=-0.006 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVD 434 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 434 (645)
..|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|.+.+++..+. .| +...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 456666777777777777777777776642 224666677777777777777777777777642 33 4566777777
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-DVSIWS--SLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~--~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
.+.+.|++++|.+.+++. ...| +...+. .+...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777778888877777765 2222 344443 333336667788888888777655
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.15 E-value=1e-05 Score=85.40 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=84.4
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVK 475 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~ 475 (645)
.+...|++++|.+.+++..+ +.|+ ...|..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34455666666666666664 2343 566666777777777777777777665 3334 5678888999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HHHcCCchHHHHHHHH
Q 048812 476 LAEHAFKHLTETDPLNDGAHVLLANI--YAKAGRLDDMSRIRMK 517 (645)
Q Consensus 476 ~a~~~~~~~~~~~p~~~~~y~~l~~~--~~~~g~~~~a~~~~~~ 517 (645)
+|++.++++++++|+++..+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999888888888 8889999999998874
No 157
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.13 E-value=5.9e-06 Score=71.96 Aligned_cols=103 Identities=6% Similarity=-0.083 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLR 466 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~ 466 (645)
...+..+...+...|++++|...|+...+ +.| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34455555666677777777777776664 234 4566666777777777777777777665 2333 5567888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
++...|++++|+..|++++++.|+++...
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 89999999999999999999998876553
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=2.5e-05 Score=67.29 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=85.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
+...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4567777788888888888888888876 55676 678888999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhC
Q 048812 500 NIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988763
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=3.5e-05 Score=81.35 Aligned_cols=116 Identities=10% Similarity=0.036 Sum_probs=73.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHc
Q 048812 362 IAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRA 439 (645)
Q Consensus 362 i~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 439 (645)
...+.+.|++++|++.|++..+. .| +..++..+..++...|++++|.+.+++..+ +.| +...|..+..+|.+.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 34455677777777777777764 33 366777777777777777777777777774 345 356677777777777
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 048812 440 GHLEESANFITSM-PIPP-DVSIWSSLLRA--CRCHQNVKLAEHAFK 482 (645)
Q Consensus 440 g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a--~~~~g~~~~a~~~~~ 482 (645)
|++++|.+.+++. ...| +...+..+..+ +...|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888777777765 2222 22334444444 666777777777777
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=2.7e-05 Score=68.69 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 458 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457888888888999999999999999999999999999999999999999999999888765
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=3.4e-05 Score=68.23 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCM 432 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 432 (645)
+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+ +.|+ ...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45667777778888888888888888877752 22566777777788888888888888887774 3453 6777778
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 048812 433 VDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m 452 (645)
..+|.+.|++++|.+.|++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 88888888888888877765
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.05 E-value=2.4e-05 Score=67.44 Aligned_cols=101 Identities=10% Similarity=-0.028 Sum_probs=60.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCH 471 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~ 471 (645)
.+...+...|++++|...|+...+ ..| +...|..+..+|.+.|++++|...+++. ...| +...|..+..++...
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 333444455555555555555443 223 3444555555555555555555555554 1223 455677777888888
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
|++++|...+++++++.|.++......
T Consensus 100 g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 100 GDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 888889999998888888776654443
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=2.1e-05 Score=66.29 Aligned_cols=94 Identities=7% Similarity=0.010 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-------hHHH
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDG-------AHVL 497 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-------~y~~ 497 (645)
..+..+...+.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|+..++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44566777888888888888888775 3344 5778888999999999999999999999998876543 6777
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 048812 498 LANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 498 l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88889999999999999988754
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=6.7e-05 Score=62.82 Aligned_cols=106 Identities=9% Similarity=-0.047 Sum_probs=60.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 048812 394 IALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRC 470 (645)
Q Consensus 394 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~ 470 (645)
......+...|++++|...|++..+ +.| +...|..+...|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3333444444444444444444442 122 2444555555555555555555555543 2223 45677777778888
Q ss_pred cCChHHHHHHHHHHHhcC------CCCchhHHHHHHHH
Q 048812 471 HQNVKLAEHAFKHLTETD------PLNDGAHVLLANIY 502 (645)
Q Consensus 471 ~g~~~~a~~~~~~~~~~~------p~~~~~y~~l~~~~ 502 (645)
.|++++|...++++++++ |.++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888887 76665555554443
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.99 E-value=0.00069 Score=66.82 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=123.2
Q ss_pred cCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCC-ChH
Q 048812 352 EKNVYLWTSVIAAYAMAGH--AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGL-VDEGYDFLSKKSRVYNIKP-KMQ 427 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~ 427 (645)
+++..+|+.-.-.+...|+ +++++++++++.+... -|...|+.-...+...|. .+++.++++.+.+. .| +..
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~S 180 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYS 180 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHH
Confidence 3577888888778888884 8999999999998743 367777777777777787 68999999999953 44 566
Q ss_pred HHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHH
Q 048812 428 HYGCMVDLLGRA--------------GHLEESANFITSM-PIPP-DVSIWSSLLRACRCH-----------QNVKLAEHA 480 (645)
Q Consensus 428 ~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~-----------g~~~~a~~~ 480 (645)
.|+....++.+. +.++++++.+++. ...| |...|+-+-..+... +.++++++.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 676666666655 5688899888876 3334 778887666665554 457899999
Q ss_pred HHHHHhcCCCCchhHHHHHHHH---HHcCCchHHHHHHHHHHhCC
Q 048812 481 FKHLTETDPLNDGAHVLLANIY---AKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 481 ~~~~~~~~p~~~~~y~~l~~~~---~~~g~~~~a~~~~~~m~~~~ 522 (645)
++++++++|++...+..++... ...|..+++...+.++++.+
T Consensus 261 ~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 261 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 9999999999866655444332 24567778888888887643
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=3.3e-05 Score=66.91 Aligned_cols=62 Identities=13% Similarity=-0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTET-------DPLNDGAH----VLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~~~~y----~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888888899999999999999888 99988888 8999999999999999999988865
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=3.4e-05 Score=64.77 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=50.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHH
Q 048812 433 VDLLGRAGHLEESANFITSM-PIPPD-V---SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN---DGAHVLLANIYAK 504 (645)
Q Consensus 433 i~~~~~~g~~~~A~~~~~~m-~~~pd-~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~y~~l~~~~~~ 504 (645)
...+.+.|++++|.+.+++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34445555555555555543 11122 1 245555556666666666666666666666665 4556666666666
Q ss_pred cCCchHHHHHHHHHHh
Q 048812 505 AGRLDDMSRIRMKLRD 520 (645)
Q Consensus 505 ~g~~~~a~~~~~~m~~ 520 (645)
.|++++|...++++.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666544
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=3.5e-05 Score=64.53 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------chhHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-P-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN-------DGAHV 496 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~y~ 496 (645)
...+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777777888888888877765 2 23467788888888999999999999999999987765 67888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988663
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.94 E-value=7.8e-05 Score=78.29 Aligned_cols=144 Identities=10% Similarity=0.041 Sum_probs=99.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
+...|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+ .. .-....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~----~~-----~~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA----SE-----SFLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH----HH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH----HH-----HHHHHHHHHHH
Confidence 3456777777888888888888888877753 1221000 0 000000 00 00145677778
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a 511 (645)
.+|.+.|++++|...+++. ...| +...|..+..+|...|++++|+..|+++++++|++..++..+..++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776 3333 6778999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHHHH
Q 048812 512 SR-IRMKLR 519 (645)
Q Consensus 512 ~~-~~~~m~ 519 (645)
.+ .++.|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 64 455553
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=8.6e-06 Score=67.56 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666666666666666666666666555543
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.93 E-value=0.00015 Score=66.20 Aligned_cols=93 Identities=12% Similarity=-0.033 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCC--------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM----PIPP--------------DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP 489 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--------------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 489 (645)
.+..+...+.+.|++++|.+.+++. +..| ...+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444455555555555555555543 1111 136788889999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 490 LNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 490 ~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
.++.++..++.+|...|++++|...+++..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.93 E-value=4.2e-05 Score=76.75 Aligned_cols=147 Identities=10% Similarity=-0.008 Sum_probs=117.6
Q ss_pred CChHHHHHHHccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHH
Q 048812 141 GKLKEVCQLFDKLPN--R-DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD--------------EVTMVSLISAR 203 (645)
Q Consensus 141 g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~ 203 (645)
+++++|...|+...+ | +...|+.+...|.+.|++++|+..|++..+...... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544432 2 456788999999999999999999999987632211 37888899999
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHH-H
Q 048812 204 TKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEA-R 281 (645)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A-~ 281 (645)
.+.|++++|...+..+++.. +.+...+..+..+|...|++++|...|++.....| +...|..+...+.+.|+.++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 56788899999999999999999999998544445 677899999999999999988 4
Q ss_pred HHHHhcc
Q 048812 282 RLFDEMV 288 (645)
Q Consensus 282 ~~~~~m~ 288 (645)
.+|..|.
T Consensus 286 ~~~~~~~ 292 (336)
T 1p5q_A 286 KLYANMF 292 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666664
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.92 E-value=9.1e-05 Score=62.87 Aligned_cols=98 Identities=8% Similarity=-0.117 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLR 466 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~ 466 (645)
...+..+...+...|++++|...|+...+. .| +...|..+...|...|++++|...+++. ...| +...|..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 334444444444444444444444444421 22 2344445555555555555555555443 1222 4567777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPL 490 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~ 490 (645)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 788888888888888888887766
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=7.7e-05 Score=64.98 Aligned_cols=137 Identities=13% Similarity=0.044 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTK-PD----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHY 429 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 429 (645)
..++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+++++..+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-------- 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR-------- 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------
Confidence 345667777777778888888777776643110 11 12444555555556666666665555442110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCchhHHHHHHHH
Q 048812 430 GCMVDLLGRAGHLEESANFITSMPIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDP------LNDGAHVLLANIY 502 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p------~~~~~y~~l~~~~ 502 (645)
..+..+ ...++..+...+...|++++|...+++.++..+ .....+..++.+|
T Consensus 81 ---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 81 ---------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 001001 133455566666777777777777777766321 1134566788888
Q ss_pred HHcCCchHHHHHHHHHHh
Q 048812 503 AKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 503 ~~~g~~~~a~~~~~~m~~ 520 (645)
...|++++|.+.+++..+
T Consensus 140 ~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888877644
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00033 Score=72.71 Aligned_cols=163 Identities=8% Similarity=-0.060 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCC-ChH
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKPDQV----TFIALLSACSHGGLVDEGYDFLSKKSRV---YNIKP-KMQ 427 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 427 (645)
++..+...|...|++++|.+++.+.... +..++.. +.+.+-..+...|..+++.+++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4677899999999999999999987642 1122222 2233334455678999999988876632 12222 256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC----c
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-------PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETD---PLN----D 492 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---p~~----~ 492 (645)
++..|...|...|++++|..++++. ..+| ...++..++..|...|++++|..++++++... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7889999999999999999998875 1122 24578888999999999999999999998743 322 2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 493 GAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 493 ~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
..+..++..+...|++++|...+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 356677888889999999988776664
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.90 E-value=0.00089 Score=66.39 Aligned_cols=217 Identities=11% Similarity=0.042 Sum_probs=138.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcC-ChHHHHHHHhhCC---CCCcccHHHHHHHHHHc-CChhHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTG-DLGYAQQIIRQGD---EPEIKIWNSIIENQLIN-GYPQEVFAI 126 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~ 126 (645)
...+++.++.+.++... +-+..+|+.--..+...| +++++...++.+. +.+..+|+.--..+.+. +
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~-------- 138 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP-------- 138 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--------
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--------
Confidence 33455677777776665 334455666555555666 4777777776654 33445566555444333 3
Q ss_pred HHHHhhcCchhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChH--------HHHHHHHHHhhCCCCCChhh
Q 048812 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYR--------EGLGLLSKMGAEGVSPDEVT 195 (645)
Q Consensus 127 ~~~m~~~~~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t 195 (645)
.+.+++..+++++.+ +|..+|+.-.-.+.+.|.++ ++++.+.++.+..+. |...
T Consensus 139 --------------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SA 203 (349)
T 3q7a_A 139 --------------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSA 203 (349)
T ss_dssp --------------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred --------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 044555555555543 46667776555555555555 899999999887433 6667
Q ss_pred HHHHHHHHhcCCC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCH--------------------HHHH
Q 048812 196 MVSLISARTKLRD-------LEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKI--------------------GEAQ 248 (645)
Q Consensus 196 ~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~--------------------~~A~ 248 (645)
|+.....+.+.+. ++++.+....++... +.|...|+-+-..+.+.|.. ....
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVE 282 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----------
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHH
Confidence 7777777777765 577888888888776 66888888877777777653 3444
Q ss_pred HHHcccCCCC-------CChhhHHHHHHHHHhcCCHHHHHHHHHhcc-cCCch
Q 048812 249 KLLGRYEIDE-------VDVVLWTTLVSGYVKSNERDEARRLFDEMV-ERNLI 293 (645)
Q Consensus 249 ~~~~~m~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~ 293 (645)
....++.... ++...+..|+..|...|+.++|.++++.+. +-|.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 283 AFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp ---CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 4444433222 467788899999999999999999999986 44543
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.90 E-value=0.00018 Score=59.95 Aligned_cols=115 Identities=8% Similarity=-0.041 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDL 435 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 435 (645)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|..++++..+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 345555666666666666666666665542 2234445555555555555555555555544211 10
Q ss_pred HHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 436 LGRAGHLEESANFITSMPIPPD----VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 436 ~~~~g~~~~A~~~~~~m~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
..++ ..+|..+...+...|++++|...++++++..| ++.....+..++.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0122 45666777777888888888888888888777 4555555544443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.88 E-value=0.00015 Score=60.69 Aligned_cols=100 Identities=10% Similarity=0.021 Sum_probs=58.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcC
Q 048812 399 ACSHGGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLGRAGHLEESANFITSM-PIPPD----VSIWSSLLRACRCHQ 472 (645)
Q Consensus 399 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g 472 (645)
.+...|++++|...|+.+.+...-.|. ...+..+...+.+.|++++|.+.+++. ...|+ ...+..+..++...|
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 344445555555555554432111110 134445555566666666666655554 12232 456677777888889
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 473 NVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 473 ~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
++++|...++++++..|+++......
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 91 KNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 99999999999998888876554433
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.87 E-value=0.00012 Score=59.14 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 048812 395 ALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP---DVSIWSSLLRACR 469 (645)
Q Consensus 395 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---d~~~~~~ll~a~~ 469 (645)
.+...+...|++++|...|++..+. .| +...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3334444444444444444444421 12 2344555555555666666666555554 2223 4677788888888
Q ss_pred hc-CChHHHHHHHHHHHhcCCCCc
Q 048812 470 CH-QNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 470 ~~-g~~~~a~~~~~~~~~~~p~~~ 492 (645)
.. |++++|.+.++++++..|.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHhCCHHHHHHHHHHHhhcccCCC
Confidence 88 888888888888888888653
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.86 E-value=0.0002 Score=60.20 Aligned_cols=62 Identities=13% Similarity=-0.026 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
..+|..+...+.+.|++++|++.|++.++. .| +...|..+..+|...|++++|++.+++..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345677788888888888888888888774 34 466777777788888888888888877764
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.85 E-value=0.00017 Score=75.74 Aligned_cols=123 Identities=8% Similarity=0.026 Sum_probs=93.2
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CC---CC-hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 048812 400 CSHGGLVDEGYDFLSKKSRVYN--IK---PK-MQHYGCMVDLLGRAGHLEESANFITSM---------PIPPDV-SIWSS 463 (645)
Q Consensus 400 ~~~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ 463 (645)
+...|++++|..++++..+... +. |+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567777777777766653221 12 22 567788888888888888888877764 344544 47889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----cCCCCchh---HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTE-----TDPLNDGA---HVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
|...|...|++++|+.+++++++ ++|+.|.+ ...|..++...|++++|+.++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 57777654 4578888889999999999999998754
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=8e-05 Score=64.86 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=63.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHhhcCc-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 048812 326 VHVYIKKNQISIDNIELAYDLFSEISE-----KN----VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGT-KPD----QV 391 (645)
Q Consensus 326 i~~~~~~~~~~~~~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~ 391 (645)
++..+.......+++++|...|.+... .+ ..++..+...|...|++++|+..+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444444455688888888876543 12 24788899999999999999999999775311 111 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
.+..+...+...|++++|.+++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55666667777888888887777665
No 183
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.83 E-value=0.00011 Score=71.59 Aligned_cols=105 Identities=8% Similarity=-0.134 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 048812 389 DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLL 465 (645)
Q Consensus 389 d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll 465 (645)
+...+..+...+...|++++|...|++..+ ..| +...|..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456777888888999999999999998885 355 5788888999999999999999998885 5555 567888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 466 RACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
.++...|++++|+..++++++++|+++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 8899999999999999999998887654444
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.77 E-value=0.00015 Score=73.62 Aligned_cols=137 Identities=9% Similarity=0.036 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQHYGCMV 433 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li 433 (645)
...|..+...+.+.|++++|+..|++..+. .|+.. .... ..... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHH
Confidence 456778888888899999999998887752 11100 0000 11111 1223 357788888
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDM 511 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a 511 (645)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998886 5555 5778999999999999999999999999999999999999999999888887776
Q ss_pred HH
Q 048812 512 SR 513 (645)
Q Consensus 512 ~~ 513 (645)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.75 E-value=0.00013 Score=60.73 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKP-DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLL 436 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 436 (645)
+..+...+.+.|++++|+..|++..+. .| +...+..+..++...|+.++|...|++..+ +.|+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~----------- 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPK----------- 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC-----------
Confidence 445555566666666666666666653 23 344555555555556666666665555553 2332
Q ss_pred HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 437 GRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 437 ~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
+...|..+..++...|++++|+..++++++.+|.+
T Consensus 84 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 84 --------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 34455555556666666666666666666666654
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.73 E-value=5.7e-05 Score=75.81 Aligned_cols=148 Identities=7% Similarity=-0.079 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048812 354 NVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMV 433 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 433 (645)
....|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+ . ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHH
Confidence 3556777888888899999999999988774 455432 23344444443322 1 23677788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHcCCchH
Q 048812 434 DLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIY-AKAGRLDD 510 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~-~~~g~~~~ 510 (645)
.+|.+.|++++|...+++. ...| +...|..+..+|...|++++|+..|+++++++|+++.++..|..+. ...+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999998888876 3334 6778888889999999999999999999999998888888887774 34566677
Q ss_pred HHHHHHHHHhC
Q 048812 511 MSRIRMKLRDM 521 (645)
Q Consensus 511 a~~~~~~m~~~ 521 (645)
+..+++.|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77788777543
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=8.3e-05 Score=64.43 Aligned_cols=111 Identities=19% Similarity=0.100 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--------Q-----VTFIALLSACSHGGLVDEGYDFLSKKSRVYN 421 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 421 (645)
...+......+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..++...+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--- 85 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--- 85 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 344566666777778888888888777764 333 1 1444444444444444444444443331
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 422 IKPKMQHYGCMVDLLGRAGHLEESANFITS-MPIPPDV-SIW----SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 422 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~pd~-~~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
+|++ ..+.||. ..| .....++...|++++|+..|+++++++|.+...+
T Consensus 86 --------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 86 --------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp --------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred --------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 1111 1346754 578 8999999999999999999999999999886654
Q ss_pred H
Q 048812 496 V 496 (645)
Q Consensus 496 ~ 496 (645)
.
T Consensus 140 ~ 140 (159)
T 2hr2_A 140 P 140 (159)
T ss_dssp T
T ss_pred H
Confidence 3
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.71 E-value=5.2e-05 Score=62.71 Aligned_cols=92 Identities=7% Similarity=0.021 Sum_probs=59.1
Q ss_pred cCcHHHHHHHHHHhHHhcCC-CC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 048812 403 GGLVDEGYDFLSKKSRVYNI-KP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAE 478 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~ 478 (645)
.|++++|...|++..+ .+. .| +...+..+...|.+.|++++|.+.+++. ...| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555666666666553 110 13 2455666666777777777777777665 2223 4667777888888888888888
Q ss_pred HHHHHHHhcCCCCchhH
Q 048812 479 HAFKHLTETDPLNDGAH 495 (645)
Q Consensus 479 ~~~~~~~~~~p~~~~~y 495 (645)
..++++++..|.++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888876543
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.0001 Score=59.81 Aligned_cols=92 Identities=10% Similarity=-0.052 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN------DGAHV 496 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~y~ 496 (645)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456666777777788888888877765 2233 67788889999999999999999999999999988 67777
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 048812 497 LLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~ 516 (645)
.+..++...|+.++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777665543
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.0022 Score=68.95 Aligned_cols=153 Identities=10% Similarity=0.003 Sum_probs=120.8
Q ss_pred ChhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHhHHhcC
Q 048812 354 NVYLWTSVIAAYAMAGH----------AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGG--LVDEGYDFLSKKSRVYN 421 (645)
Q Consensus 354 ~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~ 421 (645)
+...|+.--..+...|+ ++++++.++++.+... -+..+|..-..++.+.+ +++++.+.++++.+
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~--- 137 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLE--- 137 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh---
Confidence 44566666666666666 8899999999988632 35778887777788888 77999999999985
Q ss_pred CCC-ChHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------------CChHHHHHHHHH
Q 048812 422 IKP-KMQHYGCMVDLLGRAG-HLEESANFITSM-PIPP-DVSIWSSLLRACRCH--------------QNVKLAEHAFKH 483 (645)
Q Consensus 422 ~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~--------------g~~~~a~~~~~~ 483 (645)
+.| +...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+... +.++++.+.+++
T Consensus 138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 345 4666777777778888 899999998887 4445 678888887776663 557999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHcCCchH
Q 048812 484 LTETDPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 484 ~~~~~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
++..+|++..+|..+..++.+.++.++
T Consensus 218 ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 218 AFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 999999999999999999999888655
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.67 E-value=0.0002 Score=63.03 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChH
Q 048812 355 VYLWTSVIAAYAMAGHAQKAIDLFLEMEETG------TKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP-KMQ 427 (645)
Q Consensus 355 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 427 (645)
...|......+.+.|++++|+..|.+....- -.|+...+ .. +.| +..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~------~~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE------LDRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH------HHHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH------HHHHHHH
Confidence 4567777778888888888888888776530 01110000 00 012 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-hhHHHHHHH
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND-GAHVLLANI 501 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-~~y~~l~~~ 501 (645)
.|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|..+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6777788888888888888887775 3334 577889999999999999999999999999999886 434444333
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.67 E-value=0.00046 Score=72.35 Aligned_cols=64 Identities=8% Similarity=-0.024 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 458 VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 458 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999999999999999999999999999999998764
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00046 Score=71.57 Aligned_cols=158 Identities=12% Similarity=0.056 Sum_probs=118.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPD----------------QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKM 426 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 426 (645)
..+.+.|++++|++.|.+..+...... ...+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456778999999999999987532211 1247788899999999999999999887644433332
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 048812 427 ----QHYGCMVDLLGRAGHLEESANFITSM-------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTET------D 488 (645)
Q Consensus 427 ----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~------~ 488 (645)
.+.+.+...+...|++++|.++++.. +..+. ..++..|...+...|++++|..+++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23334444455678899998887664 23333 457888999999999999999999998873 1
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 489 PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 489 p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|.....|..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999988754
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00027 Score=71.76 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPP-DVSIWSSLLRAC 468 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~ 468 (645)
...+..+...+...|++++|.+.|++..+. .|.. ......+++. ...| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777776631 1110 0001111111 1223 456888999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 469 RCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998763
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.65 E-value=0.0001 Score=73.97 Aligned_cols=148 Identities=8% Similarity=-0.014 Sum_probs=74.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 048812 327 HVYIKKNQISIDNIELAYDLFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV 406 (645)
Q Consensus 327 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 406 (645)
+.......+..+++++|...|......+.... .+...|+.+++...+. ...|..+..++.+.|++
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCCH
Confidence 34455566778899999999987654221111 1222334444433221 13677778888888999
Q ss_pred HHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChHHHHHHHH
Q 048812 407 DEGYDFLSKKSRVYNIKP-KMQHYGCMVDLLGRAGHLEESANFITSM-PIPPD-VSIWSSLLRA-CRCHQNVKLAEHAFK 482 (645)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a-~~~~g~~~~a~~~~~ 482 (645)
++|...++...+ +.| +...|..+..+|...|++++|.+.|++. .+.|+ ...+..|... ....+..+.+...|+
T Consensus 247 ~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 247 DEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888875 345 4778888888999999999999998887 55564 3445555444 334567788889999
Q ss_pred HHHhcCCCCc
Q 048812 483 HLTETDPLND 492 (645)
Q Consensus 483 ~~~~~~p~~~ 492 (645)
+++...|.++
T Consensus 324 ~~l~~~p~~~ 333 (338)
T 2if4_A 324 GIFKGKDEGG 333 (338)
T ss_dssp ----------
T ss_pred HhhCCCCCCC
Confidence 9999888764
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00029 Score=54.64 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYA 503 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~ 503 (645)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777778888888888877765 2223 56788888888999999999999999999999999888888888877
Q ss_pred HcC
Q 048812 504 KAG 506 (645)
Q Consensus 504 ~~g 506 (645)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.64 E-value=0.00022 Score=56.98 Aligned_cols=65 Identities=26% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
-+...|..+...+...|++++|+..|+++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778899999999999999999999999999999999999999999999999999999988765
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.00024 Score=58.26 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=61.0
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 445 SANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 445 A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++..|..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444443 3334 5678888888888999999999999999999998888899999999999999999999888765
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.39 E-value=0.00091 Score=52.45 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 455 PPDVSIWSSLLRACRCHQN---VKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 455 ~pd~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++|+..+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577888888888765555 7999999999999999999999999999999999999999999998765
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.36 E-value=0.0011 Score=69.45 Aligned_cols=116 Identities=15% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCc---hhHH
Q 048812 435 LLGRAGHLEESANFITSM---------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTE-----TDPLND---GAHV 496 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m---------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~y~ 496 (645)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999888764 23344 35889999999999999999999999987 566665 4677
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHc
Q 048812 497 LLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQ 568 (645)
Q Consensus 497 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~ 568 (645)
.|+.+|...|++++|..++++..+.-.. .=...||.+.++...+.+...++...
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987542110 01237999999998888877776653
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.29 E-value=0.0016 Score=67.18 Aligned_cols=115 Identities=11% Similarity=0.039 Sum_probs=84.9
Q ss_pred HHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCc---hhH
Q 048812 434 DLLGRAGHLEESANFITSM---------PIPPD-VSIWSSLLRACRCHQNVKLAEHAFKHLTE-----TDPLND---GAH 495 (645)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~m---------~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~y 495 (645)
.-+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+.+ ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455677777777777654 11222 34788888999999999999999999887 456555 467
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHH
Q 048812 496 VLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQ 566 (645)
Q Consensus 496 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~ 566 (645)
..|+.+|...|++++|..++++..+.-. + .=...||.+.+++..|.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999988755210 0 112379999999988888877775
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.28 E-value=0.00024 Score=61.40 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=60.9
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCchhHHHHHHHHHHc
Q 048812 438 RAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQN----------VKLAEHAFKHLTETDPLNDGAHVLLANIYAKA 505 (645)
Q Consensus 438 ~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~ 505 (645)
|.+++++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|+++.+|..+.++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334445555444443 2222 44455555555544443 67999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhCC
Q 048812 506 G-----------RLDDMSRIRMKLRDMG 522 (645)
Q Consensus 506 g-----------~~~~a~~~~~~m~~~~ 522 (645)
| ++++|.+.+++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999997744
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00095 Score=53.85 Aligned_cols=67 Identities=12% Similarity=-0.009 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 456 PDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
++...|..+...+...|++++|...+++++++.|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999999999999999999999999999999999999999987643
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.12 E-value=0.003 Score=53.77 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHH----cCCHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGR----AGHLEE 444 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 444 (645)
+++++|+++|++..+.| .|+.. +-..|...+.+++|.++|++..+ . -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677888888877776 33433 55556666777777777777763 2 345555555555555 555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 048812 445 SANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAEHAFKHLTET 487 (645)
Q Consensus 445 A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~ 487 (645)
|.++|++.-..-++..+..|...|.. .+|.++|...+++..+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555554222344444445555544 45555555555555554
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.11 E-value=0.0036 Score=48.14 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDM 521 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~ 521 (645)
+...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888889999999999999999999999999999999999999999999999999988663
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.04 E-value=0.0055 Score=52.06 Aligned_cols=113 Identities=6% Similarity=-0.041 Sum_probs=94.5
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 048812 403 GGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRC----HQNVKLAE 478 (645)
Q Consensus 403 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~ 478 (645)
.++.++|.++|++..+ .| .|+.. |..+|...+.+++|.++|++.-..-+...+..|...|.. .+|.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3578899999999884 44 33333 778888888999999999987434678888888888888 89999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 048812 479 HAFKHLTETDPLNDGAHVLLANIYAK----AGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 479 ~~~~~~~~~~p~~~~~y~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 523 (645)
..|++..+. .++..+..|..+|.. .+++++|.+.+++..+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987 456889999999999 8999999999999988774
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.00 E-value=0.00069 Score=58.50 Aligned_cols=125 Identities=13% Similarity=0.096 Sum_probs=71.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH----------HHHHHHHHHhHHhcCCCCC-hHHHHHHHH
Q 048812 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLV----------DEGYDFLSKKSRVYNIKPK-MQHYGCMVD 434 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 434 (645)
.+.+.+++|++.+++..+.. +-+...|..+..++...+++ ++|+..|++..+ +.|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHH
Confidence 45566777777777776642 22456666666666666554 355555555553 3443 344555555
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 048812 435 LLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRI 514 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~ 514 (645)
+|...|++ .|+.. ...|++++|+..|+++++++|++. .|..-+.+. ++|.++
T Consensus 89 ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~~------~ka~el 140 (158)
T 1zu2_A 89 AYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEMT------AKAPQL 140 (158)
T ss_dssp HHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHH------HTHHHH
T ss_pred HHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHH------HhCHhc
Confidence 55444433 23321 012689999999999999999874 443333332 335555
Q ss_pred HHHHHhCC
Q 048812 515 RMKLRDMG 522 (645)
Q Consensus 515 ~~~m~~~~ 522 (645)
.-.....+
T Consensus 141 ~~~~~~~~ 148 (158)
T 1zu2_A 141 HAEAYKQG 148 (158)
T ss_dssp HHHHHHSS
T ss_pred cCcccccc
Confidence 55554443
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.007 Score=68.32 Aligned_cols=151 Identities=16% Similarity=0.168 Sum_probs=103.9
Q ss_pred HhcCChHHHHH-HHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHH
Q 048812 84 VFTGDLGYAQQ-IIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWN 162 (645)
Q Consensus 84 ~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n 162 (645)
...+++++|.+ ++..++.++ ....++..+...|.+++|+++.+.....-.+...+|+++.|.++.+.+. +...|.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~ 685 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDES--AEMKWR 685 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCC--CHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhC--cHhHHH
Confidence 35678888877 554433111 2266777777788888877665433222245567899999999988774 567899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcC
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCG 242 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 242 (645)
.|...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-..+...|- ++....+|.++|
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g 750 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAG 750 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcC
Confidence 999999999999999999998853 44455555557777766666555555441 234445577778
Q ss_pred CHHHHHHHHcc
Q 048812 243 KIGEAQKLLGR 253 (645)
Q Consensus 243 ~~~~A~~~~~~ 253 (645)
++++|.+++.+
T Consensus 751 ~~~~a~~~~~~ 761 (814)
T 3mkq_A 751 DIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888777765
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.93 E-value=0.012 Score=58.24 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=65.8
Q ss_pred cCChhHHHHHHHHHHH--cCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc---c-----CcHHHHHHHHHHhH
Q 048812 352 EKNVYLWTSVIAAYAM--AGH---AQKAIDLFLEMEETGTKPD-QVTFIALLSACSH---G-----GLVDEGYDFLSKKS 417 (645)
Q Consensus 352 ~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~---~-----g~~~~a~~~~~~~~ 417 (645)
..+...|...+.+... .+. ..+|+.+|++..+. .|+ ...+..+..++.. . .......+.++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4577888888876553 333 47899999999884 676 3444444444330 0 00001011111111
Q ss_pred HhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 418 RVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSM-PIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 418 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
.......+..+|..+.-.+...|++++|...+++. ...|+...|..+...+...|+.++|.+.+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00011223444444444444445555555555444 223444444444444445555555555555555555543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.88 E-value=0.0057 Score=62.99 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=63.1
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVY--NIKPK----MQHYGCMVDLLGRAGHLEESANFITSM---------PIPPDV-SIWSSLL 465 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ll 465 (645)
+.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777776655321 12222 466777777787888888777777664 234544 4678888
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----cCCCCchh
Q 048812 466 RACRCHQNVKLAEHAFKHLTE-----TDPLNDGA 494 (645)
Q Consensus 466 ~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 494 (645)
..|..+|++++|+.+++++++ ++|+.|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 888888888888888888877 56776544
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0026 Score=65.51 Aligned_cols=102 Identities=10% Similarity=-0.054 Sum_probs=77.5
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCc---hhHHHHHH
Q 048812 439 AGHLEESANFITSM---------PIPPDV-SIWSSLLRACRCHQNVKLAEHAFKHLTE-----TDPLND---GAHVLLAN 500 (645)
Q Consensus 439 ~g~~~~A~~~~~~m---------~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~y~~l~~ 500 (645)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+.+ ..|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 47888888887664 233443 5899999999999999999999999987 456655 46778999
Q ss_pred HHHHcCCchHHHHHHHHHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHH
Q 048812 501 IYAKAGRLDDMSRIRMKLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLML 558 (645)
Q Consensus 501 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l 558 (645)
+|...|++++|..++++..+.-.. .=...||.+.++...|
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHH
Confidence 999999999999999987552110 1123788888777554
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.81 E-value=0.01 Score=61.13 Aligned_cols=100 Identities=10% Similarity=-0.044 Sum_probs=67.3
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHH
Q 048812 398 SACSHGGLVDEGYDFLSKKSRVYN--IKPK----MQHYGCMVDLLGRAGHLEESANFITSM---------PIPPDV-SIW 461 (645)
Q Consensus 398 ~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~ 461 (645)
..+...|++++|.+++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334455666677666666553211 1222 456677777777777777777776654 234543 478
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCchhHHH
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTE-----TDPLNDGAHVL 497 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~y~~ 497 (645)
+.|...|...|++++|+.+++++++ ++|+.|.+-.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8899999999999999999999987 67887655443
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.74 E-value=0.0094 Score=50.83 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCcee
Q 048812 456 PDVSIWSSLLRACRCHQ---NVKLAEHAFKHLTETD-P-LNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYS 530 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 530 (645)
++..+.-.+..++.+.+ +.++|..+++++++.+ | .+...++.|.-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------
Confidence 56777777777777777 5668888888888877 6 44667778888888888888888888888662
Q ss_pred EEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc
Q 048812 531 LIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571 (645)
Q Consensus 531 ~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 571 (645)
.|...++....+.+..++.+.|++
T Consensus 101 -----------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 -----------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 345555666666667777778775
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.70 E-value=0.1 Score=42.75 Aligned_cols=139 Identities=11% Similarity=0.127 Sum_probs=102.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESA 446 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 446 (645)
-.|..++..++..+.... .+..-++.+|--...+-+-+-..++++.+-+-+.+. .+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHHH
Confidence 467788888888887764 355667777766666666667777777776544443 345555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 447 NFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 447 ~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
..+-.++ .+......-++....+|..++-.++...++..+|.++....-++++|.+.|...+|.+++++.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555554 344556667788889999999999999977777777888899999999999999999999999999974
No 215
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.70 E-value=0.0049 Score=50.19 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR 418 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 418 (645)
.+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+.++|...|++..+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777778888888888888888777652 22456677777777778888888888777664
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.68 E-value=0.0084 Score=47.45 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=59.7
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048812 353 KNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM 432 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 432 (645)
.+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+...-.++......+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 466788888999999999999999999988753 2246678888888999999999999988877432222344443333
Q ss_pred HHHH
Q 048812 433 VDLL 436 (645)
Q Consensus 433 i~~~ 436 (645)
...+
T Consensus 84 ~~~l 87 (100)
T 3ma5_A 84 QDAK 87 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.65 E-value=0.032 Score=59.78 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhH
Q 048812 353 KNVYLWTSVIAAYAMAG-HAQKAIDLFLEMEETGTKPDQVTFIALLSACSHG--------------GLVDEGYDFLSKKS 417 (645)
Q Consensus 353 ~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~ 417 (645)
+|..+|+.-.-.+.+.| .++++++.++++++..+. |...|+.....+.+. +.++++.++++++.
T Consensus 141 ~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 141 RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHH
Confidence 45555665555555666 666666666666654222 444554444433331 44566666666665
Q ss_pred HhcCCCC-ChHHHHHHHHHHHHcCC
Q 048812 418 RVYNIKP-KMQHYGCMVDLLGRAGH 441 (645)
Q Consensus 418 ~~~~~~p-~~~~~~~li~~~~~~g~ 441 (645)
. +.| +...|.-+-.++.+.++
T Consensus 220 ~---~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 220 F---TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp H---HCSSCSHHHHHHHHHHSCCCC
T ss_pred h---hCCCCccHHHHHHHHHhcCCC
Confidence 3 344 34555555555555554
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.011 Score=46.27 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 432 MVDLLGRAGHLEESANFITSM-PIPP-DVS-IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 432 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...|+++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667788888888888776 3334 556 788888889999999999999999999999887766
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.40 E-value=0.0078 Score=47.25 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=53.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 464 LLRACRCHQNVKLAEHAFKHLTETDPLNDG-AHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 464 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
....+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999987644
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.10 E-value=0.053 Score=53.70 Aligned_cols=133 Identities=10% Similarity=0.042 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHH----HcC-------CHHHHHHH
Q 048812 386 TKPDQVTFIALLSACSH-----GGLVDEGYDFLSKKSRVYNIKPK-MQHYGCMVDLLG----RAG-------HLEESANF 448 (645)
Q Consensus 386 ~~pd~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 448 (645)
.+.|...|...+.+... .....+|..+|++..+ +.|+ ...|..+.-+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 44556667666665432 2345789999999985 5787 344443333322 111 12223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 449 ITSMP-IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 449 ~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
...+. .+.+..+|.++.-.+...|++++|...++++++++|. ...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 23332 3457888888888888889999999999999999974 6788899999999999999999999887654
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.95 E-value=0.00011 Score=73.94 Aligned_cols=321 Identities=12% Similarity=0.128 Sum_probs=196.0
Q ss_pred cCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 048812 140 CGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFL 219 (645)
Q Consensus 140 ~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (645)
.++++.|.+.-++..+| ..|.-|..++.+.++..+|++.|-+. -|+..|..++.++.+.|.++.-...+..+
T Consensus 38 i~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 38 IGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp GCCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34555555544444444 45888999999999999998877332 26677899999999999999888877666
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc-----------
Q 048812 220 EESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV----------- 288 (645)
Q Consensus 220 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------- 288 (645)
.+. ..++.+=+.|+-+|+|.+++.+-.+++. .||+.--..+..-|...|.++.|.-+|..+.
T Consensus 110 Rk~--~ke~~IDteLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~ 182 (624)
T 3lvg_A 110 RKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH 182 (624)
T ss_dssp STT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSS
T ss_pred HHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHH
Confidence 554 4455667889999999999876555543 4666666778888888888888888887763
Q ss_pred -------------cCCchhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCcHHHHHHHHhhcCcCCh
Q 048812 289 -------------ERNLISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDNIELAYDLFSEISEKNV 355 (645)
Q Consensus 289 -------------~~~~~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~~~~A~~~f~~~~~~~~ 355 (645)
..+..||..+- .+|...+.+..+...--.++- .+|
T Consensus 183 L~~yq~AVdaArKAns~ktWKeV~------------~ACvd~~EfrLAqicGLniIv-------------------had- 230 (624)
T 3lvg_A 183 LGEYQAAVDGARKANSTRTWKEVC------------FACVDGKEFRLAQMCGLHIVV-------------------HAD- 230 (624)
T ss_dssp CSGGGSSTTTTTTCCSSCSHHHHT------------HHHHHSCTTTTTTHHHHHHHC-------------------CSS-
T ss_pred HHHHHHHHHHHHhcCChhHHHHHH------------HHHhCchHHHHHHHhcchhcc-------------------cHH-
Confidence 23445666555 445444444433322111111 111
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC------ChHHH
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP------KMQHY 429 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~ 429 (645)
-...++.-|-..|.+++-+.+++.-... -+.....|+-|.-.|++- .+++-.+.++.....-++.- ....|
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 1123455677788888888888776532 234566676666666653 34444444433322222211 24567
Q ss_pred HHHHHHHHHcCCHHHHHHHHH-------------hC--C--------------CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 048812 430 GCMVDLLGRAGHLEESANFIT-------------SM--P--------------IPPDVSIWSSLLRACRCHQNVKLAEHA 480 (645)
Q Consensus 430 ~~li~~~~~~g~~~~A~~~~~-------------~m--~--------------~~pd~~~~~~ll~a~~~~g~~~~a~~~ 480 (645)
.-++-+|..-..+|.|...+- +. . ++-.+...+-|+.++...=|..+..++
T Consensus 308 ~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~ 387 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNY 387 (624)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHH
Confidence 888888888888887654321 11 0 111122235566666666667777777
Q ss_pred HHHHHh----------c-CCCCchhHHHHHHHHHHcCCchH
Q 048812 481 FKHLTE----------T-DPLNDGAHVLLANIYAKAGRLDD 510 (645)
Q Consensus 481 ~~~~~~----------~-~p~~~~~y~~l~~~~~~~g~~~~ 510 (645)
|++.-. . +-++..+-.++-++|....+++.
T Consensus 388 ~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 388 FSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 776532 1 22334445577778887777653
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.58 E-value=0.071 Score=42.40 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 048812 426 MQHYGCMVDLLGRAGHLEESANFITSM-----P----IPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHV 496 (645)
Q Consensus 426 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~ 496 (645)
..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 344455666666677777766666553 0 1234668889999999999999999999999999999876644
Q ss_pred HH
Q 048812 497 LL 498 (645)
Q Consensus 497 ~l 498 (645)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.49 E-value=0.041 Score=52.21 Aligned_cols=86 Identities=13% Similarity=0.175 Sum_probs=62.0
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHc-CCchHH
Q 048812 443 EESANFITSM-PIPPD---VSIWSSLLRACRC-----HQNVKLAEHAFKHLTETDPLN-DGAHVLLANIYAKA-GRLDDM 511 (645)
Q Consensus 443 ~~A~~~~~~m-~~~pd---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~-g~~~~a 511 (645)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++...+.|+.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444444443 34454 4566777777776 488999999999999999864 88888888888884 888999
Q ss_pred HHHHHHHHhCCCcccCc
Q 048812 512 SRIRMKLRDMGLKKQLG 528 (645)
Q Consensus 512 ~~~~~~m~~~~~~~~~~ 528 (645)
.+.+++.........|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99988888766543344
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.34 E-value=0.11 Score=58.39 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=89.4
Q ss_pred CcHHHHHH-HHhhcCcCChhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 048812 338 DNIELAYD-LFSEISEKNVYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKK 416 (645)
Q Consensus 338 ~~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~ 416 (645)
+++++|.+ ++..++ +......++..+.+.|..++|+++.+.- + .-| ......|++++|.++.+.
T Consensus 613 ~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-~~f----~~~l~~~~~~~A~~~~~~- 677 (814)
T 3mkq_A 613 GEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-QKF----ELALKVGQLTLARDLLTD- 677 (814)
T ss_dssp TCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-HHH----HHHHHHTCHHHHHHHHTT-
T ss_pred CCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCc-------c-hhe----ehhhhcCCHHHHHHHHHh-
Confidence 46777777 554443 1122377778888889999888766321 1 112 223457889998887533
Q ss_pred HHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc----
Q 048812 417 SRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLND---- 492 (645)
Q Consensus 417 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~---- 492 (645)
..+...|..|.+++.+.|+++.|++.|.+++. |..+...+...|+.+...++.+.+...+..+.
T Consensus 678 ------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~ 745 (814)
T 3mkq_A 678 ------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNA 745 (814)
T ss_dssp ------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 24568899999999999999999999998752 23333334445555554444444433221110
Q ss_pred ----hhHHHHHHHHHHcCCchHHHHHHH
Q 048812 493 ----GAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 493 ----~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
+-+...+++|.+.++|++|..+.+
T Consensus 746 ~~~~g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 746 YWIAGDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHcCChHHHHHHHH
Confidence 112234455555555555555443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.82 E-value=0.13 Score=42.06 Aligned_cols=65 Identities=8% Similarity=-0.150 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 456 PDVSIWSSLLRACRCHQNVKL---AEHAFKHLTETD-P-LNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
|+..+--.+..++.+.++... ++.+++.+...+ | ..-...+.|+-++.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444333 555555555544 3 2223444555566666666666666665544
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.73 E-value=0.2 Score=38.82 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 048812 424 PKMQHYGCMVDLLGRAGH---LEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLL 498 (645)
Q Consensus 424 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l 498 (645)
++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...|+++++.+|.+ .-...+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence 356666677777665554 57777777775 3444 56677777788888999999999999999988873 333344
Q ss_pred HH
Q 048812 499 AN 500 (645)
Q Consensus 499 ~~ 500 (645)
..
T Consensus 83 ~~ 84 (93)
T 3bee_A 83 IE 84 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.73 Score=40.18 Aligned_cols=127 Identities=11% Similarity=0.085 Sum_probs=89.4
Q ss_pred hccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 048812 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHL 217 (645)
Q Consensus 138 ~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 217 (645)
..+|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-..+-.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 4678999998887766 4677899999999999999999999998753 4444445556677777666655
Q ss_pred HHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 218 FLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 218 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
.....| . +|.....+.-.|+++++.++|.+ ... |.--+......|..+.|.++.+++.
T Consensus 85 iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~--~~r-----~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 85 IAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE--GGS-----LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH--TTC-----HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH--CCC-----hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 555544 2 34455567778999999999987 332 1111112223677888888887764
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.18 E-value=0.15 Score=43.29 Aligned_cols=90 Identities=14% Similarity=0.038 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 048812 372 QKAIDLFLEMEETGTKPDQVTFIALLSACSHGG---LVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANF 448 (645)
Q Consensus 372 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 448 (645)
..+.+-|.+....|. ++..+-..+..++.+++ ++++|+.+|+...+.. .|+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~----------------------- 68 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE----------------------- 68 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH-----------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc-----------------------
Confidence 444555555544443 45555555666666666 5556666666665421 121
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 048812 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGA 494 (645)
Q Consensus 449 ~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 494 (645)
-....+-.|.-+|.+.|++++|.+.++.+++.+|++..+
T Consensus 69 -------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 69 -------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp -------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 012334456667899999999999999999999988544
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.94 E-value=1.6 Score=36.35 Aligned_cols=90 Identities=10% Similarity=0.054 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcccCceeE
Q 048812 456 PDVSIWSSLLRACRCHQ---NVKLAEHAFKHLTETDPLND-GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLKKQLGYSL 531 (645)
Q Consensus 456 pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~~~-~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 531 (645)
|+..+--.+..++.+.. +..+++.+++.+....|... ...+.|+-+|.+.|++++|.++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---------- 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---------- 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------
Confidence 45444444445555544 34567777777777766433 34456777788888888888888777652
Q ss_pred EEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc
Q 048812 532 IEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571 (645)
Q Consensus 532 i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 571 (645)
.|...++...-..+..+|.+.|++
T Consensus 107 ----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 ----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 344555555555666777777765
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.74 E-value=1.6 Score=35.84 Aligned_cols=138 Identities=14% Similarity=0.036 Sum_probs=97.6
Q ss_pred hcCChHHHHHHHhhCC-CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHH
Q 048812 85 FTGDLGYAQQIIRQGD-EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNT 163 (645)
Q Consensus 85 ~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~ 163 (645)
-.|..++-.++..+.. +.+..-||-+|--....-+-+-..+.++..-+. --...||++......+-.+. .+....+.
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~C~~~~n-~~se~vd~ 96 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINN-TLNEHVNK 96 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTT-CCCHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHHHHHHhc-chHHHHHH
Confidence 3567777777776654 334444565555555555544444444443221 22357888888888887765 45566778
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 048812 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMK 225 (645)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 225 (645)
.+..+..+|.-++--+++..+.. ..+|++.....+..||.+.|+..++.+++.++.+.|++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 88999999999999999998644 34788888889999999999999999999999888854
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.45 E-value=0.053 Score=55.03 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=153.3
Q ss_pred ChhhHHHHHhhc---CCHHHHHHHHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHH
Q 048812 40 VSLDVIMVERSC---SSIDEFERIHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLI 116 (645)
Q Consensus 40 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 116 (645)
|...|..|+.++ +..++...-+....+. ..++.+-+.|+-+|++.+++.+-...+ ..||+.-...+..-|..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~ 156 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 156 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHH
Confidence 444567777776 4555554444433333 457788899999999999877654433 35777778888888889
Q ss_pred cCChhHHHHHHHHHhhcC---chhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 048812 117 NGYPQEVFAIYLYLVTRT---VLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193 (645)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~---~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (645)
.|.++.|.-+|..+.... ..+.+.|++..|.+.-++ ..++.+|--+-.+|...+.+.-|--.--.++-. ||
T Consensus 157 e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad- 230 (624)
T 3lvg_A 157 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD- 230 (624)
T ss_dssp SCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS-
T ss_pred ccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH-
Confidence 999998888887765543 556666777666543322 257889999999999999988776554444422 22
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHccc--CCCCC-------ChhhH
Q 048812 194 VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRY--EIDEV-------DVVLW 264 (645)
Q Consensus 194 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~-------~~~~~ 264 (645)
....++..|...|.+++-..+++.-+... .....+++-|.-.|+|-. .++-.+-++.. ++.-| ....|
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 23345667888888888877777655221 456778888888888763 34333333221 11112 44568
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 048812 265 TTLVSGYVKSNERDEARR 282 (645)
Q Consensus 265 ~~li~~~~~~g~~~~A~~ 282 (645)
.-++-.|.+..++|.|..
T Consensus 308 ~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhcchhHHHHHH
Confidence 899999998888887754
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.08 E-value=0.14 Score=48.67 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=60.9
Q ss_pred HHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHHc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCCh
Q 048812 407 DEGYDFLSKKSRVYNIKPK---MQHYGCMVDLLGRA-----GHLEESANFITSM-PIPPD--VSIWSSLLRACRC-HQNV 474 (645)
Q Consensus 407 ~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~pd--~~~~~~ll~a~~~-~g~~ 474 (645)
..|...+++..+ +.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 344444444442 4565 44666666666663 7777777777665 44452 5556666666666 4788
Q ss_pred HHHHHHHHHHHhcCCCC-chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 048812 475 KLAEHAFKHLTETDPLN-DGAHVLLANIYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 475 ~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~g~~~~a~~~~~~m~ 519 (645)
+++.+.++++++..|.. |. ..+.+... -++|..+++++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~--~~lan~~~----q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH--NKLLVILS----QKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS--CHHHHHHH----HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCC--hhHHHHHH----HHHHHHHHHHhH
Confidence 88888888888877652 22 23333333 345655555443
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.70 E-value=0.45 Score=37.53 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 457 DVSIWSSLLRACRCHQNVKLAEHAFKHLTETD-------PLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 457 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
+..-+-.|...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556678888999999999999999998842 33456788999999999999999999998865
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.05 E-value=2.2 Score=37.17 Aligned_cols=98 Identities=9% Similarity=-0.030 Sum_probs=52.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048812 402 HGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAF 481 (645)
Q Consensus 402 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~ 481 (645)
..|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|++.+ | +..|.--|...|+.+.-.++.
T Consensus 17 ~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---D---~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH---S---FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---C---HHHHHHHHHHhCCHHHHHHHH
Confidence 456666666655433 245566666666666666666666666654 2 223333344455555544444
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 048812 482 KHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMK 517 (645)
Q Consensus 482 ~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~ 517 (645)
+.....+- +..-...+.-.|+.+++.+++.+
T Consensus 84 ~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44333221 23333445566777777766643
No 235
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.95 E-value=2.7 Score=32.24 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048812 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 187 (645)
+++...+...+. +++..+.+-+- +...|++++|..+.+...-||++.|-+|-.. +.|..+++..-+.++-.+
T Consensus 27 ~tIAdwL~~~~~-~E~v~lIR~sS-----LmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 27 NCIAEWLHLKGE-EEAVQLIRLSS-----LMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHH-----HHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHH-----HHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 444555555566 66666665543 2567999999999999999999999888654 667777777777777777
Q ss_pred CCCCChhhHH
Q 048812 188 GVSPDEVTMV 197 (645)
Q Consensus 188 g~~p~~~t~~ 197 (645)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 44444444
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.91 E-value=1.7 Score=36.58 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 472 QNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 472 g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|+++|..+|+.++++...-+..+...+..-.+.|+.+.|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 566666666666666543334555556666666666666666666665544
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.78 E-value=1.3 Score=48.48 Aligned_cols=52 Identities=13% Similarity=-0.114 Sum_probs=48.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 048812 467 ACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKL 518 (645)
Q Consensus 467 a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m 518 (645)
-|...|+++.|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3677899999999999999999999999999999999999999999999887
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.75 E-value=24 Score=37.73 Aligned_cols=112 Identities=9% Similarity=0.069 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHH
Q 048812 369 GHAQKAIDLFLEMEETGTKPDQVTF----IALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEE 444 (645)
Q Consensus 369 g~~~~A~~l~~~m~~~g~~pd~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 444 (645)
.+.+.|..+|......+ ..+.... ..+.......+...++...+..... ..++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 37788999998886543 2233222 2233333444534455556665442 22333334444445557899999
Q ss_pred HHHHHHhCCCCC-C-H--HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 048812 445 SANFITSMPIPP-D-V--SIWSSLLRACRCHQNVKLAEHAFKHLTE 486 (645)
Q Consensus 445 A~~~~~~m~~~p-d-~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 486 (645)
|...|+.|+..+ + . .-| +..+....|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW--~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYW--QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHH--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996433 2 2 233 33466778999999999999875
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.51 E-value=1.8 Score=35.49 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 474 VKLAEHAFKHLTETDPLN-DGAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 474 ~~~a~~~~~~~~~~~p~~-~~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
..+|+.+++.+...+|.. ......|+-++.+.|++++|.+..+.+.+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345666666666655532 33445566666677777777776666644
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.37 E-value=2.4 Score=34.53 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAH 495 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y 495 (645)
-.|.-++.+.|+++.|.+.++.+++.+|+|..+.
T Consensus 78 Y~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 78 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455678889999999999999999999885543
No 241
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.29 E-value=2.6 Score=32.30 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 048812 108 NSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAE 187 (645)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~ 187 (645)
+++...+...+. +++..+.+-+- +...|++++|..+.+...-||+++|-+|-. .+.|..+++..-+.++-.+
T Consensus 26 ~tIAdwL~~~~~-~E~v~lIR~sS-----LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 26 LCIAEWLERLGQ-DEAARLIRISS-----LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHH-----HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHH-----HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 444555555566 66666665543 256799999999999999999999988865 4678888887777788777
Q ss_pred CCCCChhhHH
Q 048812 188 GVSPDEVTMV 197 (645)
Q Consensus 188 g~~p~~~t~~ 197 (645)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 44444444
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.66 E-value=5.2 Score=33.63 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.0
Q ss_pred CcCChhHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCC
Q 048812 351 SEKNVYLWTSVIAAYAMAGHA------QKAIDLFLEMEETGTKPD 389 (645)
Q Consensus 351 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd 389 (645)
...|..+|-..+...-+.|++ ++..++|++.... ++|+
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 356788888888888888998 8888888888775 6775
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.68 E-value=1.9 Score=43.38 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCcccC
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRD-----MGLKKQL 527 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 527 (645)
..++.++...|+.+++...++.++..+|-+...|..|+.+|.+.|+..+|.+.++..++ .|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44566677788888888888888888888888888888888888888888888877643 4665544
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.49 E-value=22 Score=36.24 Aligned_cols=181 Identities=8% Similarity=0.089 Sum_probs=113.4
Q ss_pred CcHHHHHHHHhhcCc-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHh----cc
Q 048812 338 DNIELAYDLFSEISE-----K----NVYLWTSVIAAYAMAGHAQKAIDLFLEMEE-TGTKPDQVTFIALLSACS----HG 403 (645)
Q Consensus 338 ~~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~----~~ 403 (645)
++++.|.+.+-.+.. . .......++..|...|+++...+.+.-+.. .|..+..++ .++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 366777766644332 2 234567788999999999998887776653 343333332 3333222 22
Q ss_pred CcHHH--HHHHHHHhHH--hcCCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCC---HHHHHHHHHHH
Q 048812 404 GLVDE--GYDFLSKKSR--VYNIKP---KMQHYGCMVDLLGRAGHLEESANFITSMP-----IPPD---VSIWSSLLRAC 468 (645)
Q Consensus 404 g~~~~--a~~~~~~~~~--~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~pd---~~~~~~ll~a~ 468 (645)
...+. -......... +..+-. .......|...|...|++.+|.+++..++ ..+. ...+.-.++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1222211110 001111 12345678899999999999999999873 1111 34667778889
Q ss_pred HhcCChHHHHHHHHHHHh---cCCCCc----hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 048812 469 RCHQNVKLAEHAFKHLTE---TDPLND----GAHVLLANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 469 ~~~g~~~~a~~~~~~~~~---~~p~~~----~~y~~l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
...+|+..|..+++++.. ..+.++ ..|...+.++...++|.+|.+.|.+.-+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999753 223332 3567888889999999999888776643
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.71 E-value=36 Score=32.92 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=63.3
Q ss_pred HhcCChHHHHHHH----HHHhhCCCCCChhhHHHHHHHHhcCCChH-----HHHHHHHHHHHhC--CCCchhHHHHHHHH
Q 048812 169 TSMGMYREGLGLL----SKMGAEGVSPDEVTMVSLISARTKLRDLE-----MGKNLHLFLEEST--MKISGSLLNYLVDM 237 (645)
Q Consensus 169 ~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~ 237 (645)
.+.|+...|-++- +-+.+.++++|..+...++..+.....-+ -..+...+-.+.| ..-|+.....+...
T Consensus 66 l~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~ 145 (336)
T 3lpz_A 66 LRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTL 145 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 3444444443333 33344566677766666666665544321 1122233333444 33477888889999
Q ss_pred HHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHH
Q 048812 238 YFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERD 278 (645)
Q Consensus 238 y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~ 278 (645)
|.+.+++.+|+.-|-. ...++...+..|+.-+...+...
T Consensus 146 ~~~e~~~~~Ae~H~il--g~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 146 YVEEGEFEAAEKHLVL--GTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp HHHTTCHHHHHHHHTT--SCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HHccCCHHHHHHHHHh--cCCchHHHHHHHHHHHHHhcCCc
Confidence 9999999999998843 33334467777776666655433
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.34 E-value=39 Score=32.38 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=66.2
Q ss_pred HHhcCChHHHHHH----HHHHhhCCCCCChhhHHHHHHHHhcCCC--h---HHHHHHHHHHHHhCC--CCchhHHHHHHH
Q 048812 168 YTSMGMYREGLGL----LSKMGAEGVSPDEVTMVSLISARTKLRD--L---EMGKNLHLFLEESTM--KISGSLLNYLVD 236 (645)
Q Consensus 168 ~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~---~~a~~~~~~~~~~g~--~~~~~~~~~li~ 236 (645)
+.+.|+...|-++ .+-..+.++++|..+...++..+..... . .-..+...+..+.|- .-|+.....+..
T Consensus 63 ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 63 FLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 3344555444443 3444455677777776666666554321 1 122233333333332 247788899999
Q ss_pred HHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhc---CCHHHH
Q 048812 237 MYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKS---NERDEA 280 (645)
Q Consensus 237 ~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~---g~~~~A 280 (645)
.|.+.|++.+|+.-|-. ....|...+..|+.-+... |...++
T Consensus 143 ~~~~e~~~~~A~~H~i~--~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 143 KLLEGDFVYEAERYFML--GTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp HHHHTTCHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHhhcCCHHHHHHHHHh--CCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 99999999999998753 2222566777777666665 666554
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.29 E-value=8.5 Score=29.74 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=38.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 451 SMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 451 ~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
.+-.-|++.+..+.+.||++.+|+..|.++++-+...-.+....|-.++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3456799999999999999999999999999988875433345565553
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.03 E-value=4.6 Score=44.13 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=76.3
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHhhCCCCCChhh-H-HHHHHHHhcCCC-hHHHHHHHHHHHHh------CCCC-c-----
Q 048812 164 MISCYTSMGM-YREGLGLLSKMGAEGVSPDEVT-M-VSLISARTKLRD-LEMGKNLHLFLEES------TMKI-S----- 227 (645)
Q Consensus 164 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t-~-~~ll~~~~~~~~-~~~a~~~~~~~~~~------g~~~-~----- 227 (645)
++..+...++ .+.|+.+|+++... .|...+ | ..++......++ --+|.++..+.++. ..++ +
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 4444444566 57899999999886 343332 2 233333333332 12244444333321 1111 1
Q ss_pred -----hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 048812 228 -----GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNERDEARRLFDEMV 288 (645)
Q Consensus 228 -----~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 288 (645)
....+.-.+.+...|+++-|+++-++.....| +-.+|..|..+|...|+++.|+-.+..++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234556678999999999887433455 67899999999999999999999999986
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.64 E-value=8.4 Score=38.59 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCCh
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSR----VYNIKPKM 426 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~ 426 (645)
...++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 445667777888888888888887764 344677888888888888888888888877653 34555544
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.40 E-value=76 Score=35.56 Aligned_cols=96 Identities=10% Similarity=-0.003 Sum_probs=39.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCH
Q 048812 363 AAYAMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHL 442 (645)
Q Consensus 363 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 442 (645)
.+|+..|+.....+++..+... ...+......+--++...|+.+.+.+++..+.+ + -.|.+..-.++.-+....|..
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~-~-~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK-S-HNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG-C-SCHHHHHHHHHHHHHHTSSSC
T ss_pred HHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHhccCCC
Confidence 3455556654444466655543 111111111111233334444444445444442 1 134444333443344434432
Q ss_pred -HHHHHHHHhCCCCCCHHHH
Q 048812 443 -EESANFITSMPIPPDVSIW 461 (645)
Q Consensus 443 -~~A~~~~~~m~~~pd~~~~ 461 (645)
.+|.+++..+...+|..+-
T Consensus 645 ~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 645 LQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp CHHHHHHHHHHHTCSSHHHH
T ss_pred cHHHHHHHHHHccCCCHHHH
Confidence 4555555555434444433
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.63 E-value=13 Score=28.75 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 371 AQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 371 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.| +...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 335556666666677889999999999999999999999999988886544 33556777764
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.61 E-value=15 Score=31.48 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEET-GTKPD-------QVTFIALLSACSHGGLVDEGYDFLSKKSRV 419 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 419 (645)
.-+..+...|.++.|+-+.+.+... +..|| ..++..+..++...+.+.+|...|++..+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3456677788888888777765432 12333 235667777888889999998888886543
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.26 E-value=30 Score=40.18 Aligned_cols=66 Identities=14% Similarity=-0.011 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCc----hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 459 SIWSSLLRACRCHQNVKLAEHAFKHLTETD-PLND----GAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 459 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~~~----~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
.-|..++.-+.+++.++.+.+..+.+++.. ++++ ..|..+...+...|++++|...+-.+.+...+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 346667777777888888888887777743 3332 14556677777888888888777766655443
No 254
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.64 E-value=31 Score=30.50 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=73.9
Q ss_pred HHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 048812 443 EESANFITSM-PIPPDVS---IWSSLLRACRCHQNVKLAEHAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRM 516 (645)
Q Consensus 443 ~~A~~~~~~m-~~~pd~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~--~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~ 516 (645)
+.+...|... ..+-|+. .|-..+..| ..++...+..+|..|.. ++-.-+..|...+..+...|++++|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444 2444544 455555444 24557799999999987 667778889999999999999999999999
Q ss_pred HHHhCCCcccCceeEEEECCEEEEEEeCCCCCcChHHHHHHHHHHHHHHHHcCcc
Q 048812 517 KLRDMGLKKQLGYSLIEQGGFVHKFTSGDIFNPHSEEIYLMLNEIEMTLQQQGLQ 571 (645)
Q Consensus 517 ~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 571 (645)
.=.+++-+| .+.+.....+...+|.+.+++
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 887766432 345566667788888888885
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.83 E-value=34 Score=29.18 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=31.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC-CCCCCh-------hhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 048812 163 TMISCYTSMGMYREGLGLLSKMGAE-GVSPDE-------VTMVSLISARTKLRDLEMGKNLHLFLEE 221 (645)
Q Consensus 163 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 221 (645)
.-+..+...|.++.|+-+...+... +..|+. .++..+..++...+++..|...|..+++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3355566666666666555554322 112221 1344455566666666666666666543
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.24 E-value=80 Score=30.86 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCC--HHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNE--RDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
.+.++.=|...|+.++|.+.++++..+.- ..+...++..++-+.++ .+...+++..+...+.+|-..+..||.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 57788999999999999999999655432 34455666666665443 4567888888888899988888877764
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.57 E-value=50 Score=30.74 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 048812 366 AMAGHAQKAIDLFLEMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKS 417 (645)
Q Consensus 366 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 417 (645)
.+.|+.++|++....-++. -+-|...=..++.-+|-.|++++|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455555555555554443 12233444444455555555555555555444
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.74 E-value=94 Score=36.05 Aligned_cols=85 Identities=11% Similarity=0.029 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHH
Q 048812 196 MVSLISARTKLRDLEMGKNLHLFLEESTMKIS----GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGY 271 (645)
Q Consensus 196 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~ 271 (645)
|.-++..+.+.+.++.+.++-..+++..-+.+ ...|..+.+.+...|++++|...+-.+.....-......||...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 33444444444555555444444443321111 12455566666666666666666644211122234455566666
Q ss_pred HhcCCHHHH
Q 048812 272 VKSNERDEA 280 (645)
Q Consensus 272 ~~~g~~~~A 280 (645)
+..|..+.-
T Consensus 982 ce~~~~~~L 990 (1139)
T 4fhn_B 982 TKQGKINQL 990 (1139)
T ss_dssp HHHCCHHHH
T ss_pred HhCCChhhh
Confidence 666665543
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.44 E-value=23 Score=29.02 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=39.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 048812 449 ITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLA 499 (645)
Q Consensus 449 ~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~ 499 (645)
+-.+..-|++.+..+-+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334456799999999999999999999999999998874433345566553
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.60 E-value=38 Score=26.04 Aligned_cols=82 Identities=11% Similarity=-0.027 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
..-++|.-|-+.+...+- ...+--+-+..+...|++++|..+.+. ...||.+.|-+|-. .+.|..+++..-+.+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~--~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHG--NPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTT--CCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC--CCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 345677777777666552 333333445667889999999999998 77899999987754 477888888887777
Q ss_pred cccCCchh
Q 048812 287 MVERNLIS 294 (645)
Q Consensus 287 m~~~~~~t 294 (645)
+...+...
T Consensus 94 la~sg~p~ 101 (115)
T 2uwj_G 94 LGGSSDPA 101 (115)
T ss_dssp HHTCSSHH
T ss_pred HHhCCCHH
Confidence 76555443
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.52 E-value=37 Score=27.73 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=20.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 048812 463 SLLRACRCHQNVKLAEHAFKHLTETDPLND 492 (645)
Q Consensus 463 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 492 (645)
-|.-|+.+.|+++.|.+..+.+++.+|+|.
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344556677777777777777777777774
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=68.28 E-value=1.6e+02 Score=33.06 Aligned_cols=149 Identities=13% Similarity=0.056 Sum_probs=70.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH--HHHHHHcCCHH
Q 048812 367 MAGHAQKAIDLFLEMEETGTKPDQ-VTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCM--VDLLGRAGHLE 443 (645)
Q Consensus 367 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~ 443 (645)
-.|+.+....++..+.+. ..+. .-+..+.-++...|+.+.+..+.+.+... -.|.+..-.++ .-+|+-.|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~--~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQET--QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred ccCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 445555556666655542 1222 22222223444667777777776666632 12333322233 33455666766
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCc-hHHHHHHHHHH
Q 048812 444 ESANFITSMPIPPDVSIWSSLLRA--CRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRL-DDMSRIRMKLR 519 (645)
Q Consensus 444 ~A~~~~~~m~~~pd~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~-~~a~~~~~~m~ 519 (645)
...+++..+...++..+-...+-+ +...|+.+.+.++++.+.+........-..++-+....|.. .++..++..+.
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 666677766333333333333333 33456666666666555542211111112233333333333 45666666664
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.70 E-value=40 Score=25.96 Aligned_cols=82 Identities=9% Similarity=0.059 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 207 RDLEMGKNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 207 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
..-++|.-|-+.+...+- ...+--+-+..+...|++++|..+.+. ...||.+.|-+|-. .+.|..+++..-+.+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~--~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNK--LAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTT--SCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCC--CCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 345677777776666552 333333345667788999999999998 77899999987755 467777888777767
Q ss_pred cccCCchh
Q 048812 287 MVERNLIS 294 (645)
Q Consensus 287 m~~~~~~t 294 (645)
+...+...
T Consensus 95 la~sg~p~ 102 (116)
T 2p58_C 95 LARSQDPR 102 (116)
T ss_dssp HTTCCCHH
T ss_pred HHhCCCHH
Confidence 76555443
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.40 E-value=11 Score=35.06 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 048812 435 LLGRAGHLEESANFITSM-PIPP-DVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLN 491 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 491 (645)
.+.+.|.+++|++....- .-.| |...-..|+.-++..|++++|.+-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345677777777655443 3334 56666677777777888888888777777777754
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.56 E-value=27 Score=28.59 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 048812 176 EGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYLVD 236 (645)
Q Consensus 176 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 236 (645)
+..+-++.+....+.|++......|++|-+.+|+..|..+++-+...- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455666777777788888888889999999999998888887775442 334556666543
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.92 E-value=62 Score=26.82 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 048812 462 SSLLRACRCHQNVKLAEHAFKHLTETDPLNDG 493 (645)
Q Consensus 462 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 493 (645)
--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 81 YyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 81 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34556789999999999999999999999854
No 267
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.76 E-value=61 Score=30.33 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=81.1
Q ss_pred HHHHHHHhCCCCChhhhhhHHHHHHhcCChHHHHHHHhhCCCCC---cccHHHHHHHHHHcCChhHHHHHHHHHhhcCch
Q 048812 60 IHSHLITTNLMRDPQISTQVFEFLVFTGDLGYAQQIIRQGDEPE---IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVL 136 (645)
Q Consensus 60 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 136 (645)
+...+++.|..++..-..+.+...+..|+.+-+..+++....++ ..-++.+..+ +..
T Consensus 46 ~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A-~~~------------------- 105 (285)
T 3kea_A 46 LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA-VDS------------------- 105 (285)
T ss_dssp HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHT-------------------
T ss_pred HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH-HHc-------------------
Confidence 44445556655444444566667777788887777777654332 2333444333 233
Q ss_pred hhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHH
Q 048812 137 LNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMG 212 (645)
Q Consensus 137 ~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a 212 (645)
|+.+-+.-+++.-.. ++..-|.+.+...+..|+. ++++.+.+.|..+... .-.+.+...+..|+.+-+
T Consensus 106 ----g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 ----GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV----SIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp ----TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCH----HHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred ----CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH----HHHHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 444444444443221 3333333444445556664 3444455555443221 233344445566777655
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 213 KNLHLFLEESTMKISGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
+-+++.-..... .|..-.+..+..-++.|+.+-+.-+++.
T Consensus 178 ~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 178 ILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred HHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 555444222211 1111122234445667777777766665
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.52 E-value=62 Score=27.14 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 475 KLAEHAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 475 ~~a~~~~~~~~~--~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
+.+..+|..|.. ++-.-+..|...+..+...|++++|.++++.=.+++-+
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 337888888877 55667788889999999999999999999887776643
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.38 E-value=1.4e+02 Score=29.67 Aligned_cols=163 Identities=9% Similarity=-0.045 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----h
Q 048812 356 YLWTSVIAAYAMAGHAQKAIDLFLEMEET-GTKP---DQVTFIALLSACSHG-GLVDEGYDFLSKKSRVYNIKPK----M 426 (645)
Q Consensus 356 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~ 426 (645)
.+...|...|.+.|+.++..+++...+.. +.-| .......++..+... +..+.-.++..+..+-..-.-. .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999998888876532 1112 123456777777653 3333334444443321110111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCch--
Q 048812 427 QHYGCMVDLLGRAGHLEESANFITSMP-----IPPD---VSIWSSLLRACRCHQNVKLAEHAFKHLTETD---PLNDG-- 493 (645)
Q Consensus 427 ~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~pd---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---p~~~~-- 493 (645)
..=.-++..|...|++.+|.+++.++. .... ..++..-+..|...+|..++..++.++.... +.+|.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 122368899999999999998888771 1111 2345566667889999999999998887622 22222
Q ss_pred --hHHHHHHHHH-HcCCchHHHHHHHHH
Q 048812 494 --AHVLLANIYA-KAGRLDDMSRIRMKL 518 (645)
Q Consensus 494 --~y~~l~~~~~-~~g~~~~a~~~~~~m 518 (645)
....-+-++. ..++|.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2223444566 788999888776554
No 270
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.41 E-value=1.5e+02 Score=29.30 Aligned_cols=93 Identities=12% Similarity=-0.042 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCChHHH----
Q 048812 360 SVIAAYAMAGHAQKAIDLFLEMEETGTKPD-----QVTFIALLSACSHGGLVDEGYDFLSKKSRVYN-IKPKMQHY---- 429 (645)
Q Consensus 360 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~---- 429 (645)
-++..|...|++.+|+.++.++.+.=-+.| ...+..-+..|...+++.++...+.+...... +.|++..-
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578899999999999999999986422222 23455566678889999999999887764322 22333222
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHhC
Q 048812 430 GCMVDLLG-RAGHLEESANFITSM 452 (645)
Q Consensus 430 ~~li~~~~-~~g~~~~A~~~~~~m 452 (645)
.+-.-++. ..+++.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 22233445 688999988776543
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.15 E-value=78 Score=26.94 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=39.8
Q ss_pred HHHHHHHHHHh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 048812 476 LAEHAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGLK 524 (645)
Q Consensus 476 ~a~~~~~~~~~--~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 524 (645)
....+|..|.. ++-.-+..|...+..+...|++.+|.++++.-.+++-+
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 36678888877 55677788889999999999999999999888776643
No 272
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=55.93 E-value=96 Score=29.65 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=44.8
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 448 FITSMPIPPD--VSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 448 ~~~~m~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|...+++|. ..++++-++.+.+++|+..|..+.+++++++|... ..++|.++...-...+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 4555567664 34677888889999999999999999999998542 2355777776665443
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.60 E-value=1.3e+02 Score=30.12 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH------H
Q 048812 357 LWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD--QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQ------H 428 (645)
Q Consensus 357 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~------~ 428 (645)
++..+..-|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+..+..++.....-.++.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567788999999999999999999987543333 46778888999999999999999988875433333322 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 429 YGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 429 ~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
|..++ +...+++.+|.+.|-+.
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHH
Confidence 33332 34568899988877665
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.30 E-value=97 Score=27.54 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCChh--hhhhHHHHHHhcCChHHHHHHHhhCCCC
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQ--ISTQVFEFLVFTGDLGYAQQIIRQGDEP 102 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~~ 102 (645)
++.+..+.+.+.+.+.|..++.. ...+.+...+..|+.+-+..+++....+
T Consensus 20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 72 (241)
T 1k1a_A 20 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72 (241)
T ss_dssp TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 77877777777777777654432 2345666777888888888888765543
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.29 E-value=2.6e+02 Score=29.95 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=24.5
Q ss_pred hHHHHHHHHH-----HHHcCCHHHHHHHHHhCCCCCC
Q 048812 426 MQHYGCMVDL-----LGRAGHLEESANFITSMPIPPD 457 (645)
Q Consensus 426 ~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~pd 457 (645)
..++..|.++ +...|++++|++.++++++-|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 4566665554 3789999999999999977674
No 276
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.27 E-value=27 Score=32.08 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHhhc--CCHHHHHHHHHHHHHhCCCCChhh------hhhHHHHHH---hcCChHHHHHHHhhC
Q 048812 46 MVERSC--SSIDEFERIHSHLITTNLMRDPQI------STQVFEFLV---FTGDLGYAQQIIRQG 99 (645)
Q Consensus 46 ~~l~~~--~~~~~~~~~~~~~~~~g~~~~~~~------~~~ll~~~~---~~g~~~~A~~~f~~~ 99 (645)
.+..++ ++.+..+.+.+.+.+.|...+... ..+.+...+ +.|+.+-+..+++..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344444 778777788888888887665333 223333333 668888888887753
No 277
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.20 E-value=40 Score=27.42 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCC--HHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNE--RDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
.+.++.-|...|+.++|.+.++++..+.- ..+...++..++-+.+. .+.+..++..+...+.+|-..+..||.+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~ 86 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 86 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 45678889999999999999998543321 34455666666666542 4667888888888888888888876654
No 278
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.04 E-value=2.4e+02 Score=28.43 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCC--CC--hH
Q 048812 358 WTSVIAAYAMAGHAQKAIDLFLEMEET--GTKPD---QVTFIALLSACSHGGLVDEGYDFLSKKSRV-YNIK--PK--MQ 427 (645)
Q Consensus 358 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~--p~--~~ 427 (645)
...|...|...|++.+|..++.++... |..+. ...+...+..|...+++.+|..++.++... .... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345778899999999999999998743 22222 235666777899999999999999887531 1222 22 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 048812 428 HYGCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 428 ~~~~li~~~~~~g~~~~A~~~~~~m 452 (645)
.|.+++..+...+++.+|.+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7788999999999999998877665
No 279
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.56 E-value=2.1e+02 Score=27.60 Aligned_cols=125 Identities=7% Similarity=0.000 Sum_probs=70.1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHhH---HhcCC--CCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q 048812 379 LEMEETGTKPDQVTFIALLSACSHGGL--VDEGYDFLSKKS---RVYNI--KPKMQHYGCMVDLLGRAGHLEESANFITS 451 (645)
Q Consensus 379 ~~m~~~g~~pd~~t~~~ll~a~~~~g~--~~~a~~~~~~~~---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 451 (645)
+-..+.++++|..+...|+..+..... .+. ..+.+.+. .++|- .-++.....+...|.+.|++.+|+.-|-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i- 160 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV- 160 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-
Confidence 333445556666555555555443332 111 11222221 12232 2357777888999999999999998874
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHcCCchHHHHHHHHHHh
Q 048812 452 MPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVL-LANIYAKAGRLDDMSRIRMKLRD 520 (645)
Q Consensus 452 m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~-l~~~~~~~g~~~~a~~~~~~m~~ 520 (645)
.+..+.+..+..++-.+...+. |.....|.+ .+--|...++...|..+++...+
T Consensus 161 lg~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 161 LGTKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TSCTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444666665555444332 333344442 44456777888888887766654
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.18 E-value=1.8e+02 Score=26.41 Aligned_cols=114 Identities=18% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHhcCChHHHHHHHHHHhhC-CCCCCh---hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHH
Q 048812 167 CYTSMGMYREGLGLLSKMGAE-GVSPDE---VTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS--LLNYLVDMYFK 240 (645)
Q Consensus 167 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~ 240 (645)
..+..|+.+ +++.+.+. |..++. ...+.+..++ ..++.....++...+.+.|..++.. ...+.+...++
T Consensus 154 ~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 154 DAAEKGHVE----VLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHTCHH----HHHHHHHTSCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHcCCHH----HHHHHHHhcCCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 344556654 33344433 444432 2233333333 3455444566777777877655432 12334555677
Q ss_pred cCCHHHHHHHHcccC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 241 CGKIGEAQKLLGRYE--IDEVDVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 241 ~g~~~~A~~~~~~m~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
.|+.+-+..+++... ...+|..-++.+ ..-++.|+.+-+.-+++.
T Consensus 229 ~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l-~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 229 KKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKR 275 (285)
T ss_dssp TTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHhccCCCccccCCCCCcHH-HHHHHcCcHHHHHHHHHc
Confidence 888888888887311 111232223333 333455666655555544
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.39 E-value=42 Score=33.97 Aligned_cols=96 Identities=16% Similarity=-0.015 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHH-
Q 048812 392 TFIALLSACSHGGLVDEGYDFLSKKSRVYNIKP--KMQHYGCMVDLLGRAGHLEESANFITSM----PIPPDVSIWSSL- 464 (645)
Q Consensus 392 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd~~~~~~l- 464 (645)
+...+..-+.+.|+++.|.+.+.++.. +...+ -...+-.++.++...+++..|...+++. ...+|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~-~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLS-KAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHH-HHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 455667777788888888888887774 22222 2566777777777788888777777665 112232221111
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHhcC
Q 048812 465 ---LRACRCHQNVKLAEHAFKHLTETD 488 (645)
Q Consensus 465 ---l~a~~~~g~~~~a~~~~~~~~~~~ 488 (645)
.-.+...+++..|-..|-++..-.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 111334567777777776665543
No 282
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=43.35 E-value=1.7e+02 Score=25.70 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=13.9
Q ss_pred hhHHHHHHhcCChHHHHHHHhhC
Q 048812 77 TQVFEFLVFTGDLGYAQQIIRQG 99 (645)
Q Consensus 77 ~~ll~~~~~~g~~~~A~~~f~~~ 99 (645)
.+.+...+..|+.+-+..+++..
T Consensus 38 ~t~L~~A~~~g~~~~v~~Ll~~~ 60 (232)
T 2rfa_A 38 ETALHIAALYDNLEAAMVLMEAA 60 (232)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcC
Confidence 34455556667777666666654
No 283
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.83 E-value=1.8e+02 Score=28.11 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=75.3
Q ss_pred hhhHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCC
Q 048812 76 STQVFEFLVFTGDLGYAQQIIRQGDEPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPN 155 (645)
Q Consensus 76 ~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~ 155 (645)
.+.++.-|...|+.++|.+.++++..|.- ...++...+... .. .+...-+.+.+++..+.+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~--~~~~v~~~i~~~------------le-----~~~~~re~~~~Ll~~L~~ 74 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL--LFIFVRHGVEST------------LE-----RSAIAREHMGQLLHQLLC 74 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--HHHHHHHHHHHH------------TT-----TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc--HHHHHHHHHHHH------------hC-----CCHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999886642 222222211100 00 001122344555555555
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH-hcCCChHH---HHHHHHHHHHhCCCCchhHH
Q 048812 156 RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISAR-TKLRDLEM---GKNLHLFLEESTMKISGSLL 231 (645)
Q Consensus 156 ~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~---a~~~~~~~~~~g~~~~~~~~ 231 (645)
.+..+-..+..|+. ..++.+..+.-. -|....+..-+-+. ...|-+.. ...+.+.+.+.| ......
T Consensus 75 ~~~is~~~~~~Gf~------~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl 144 (339)
T 1ug3_A 75 AGHLSTAQYYQGLY------EILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLL 144 (339)
T ss_dssp TTSSCHHHHHHHHH------HHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHH
T ss_pred CCCCCHHHHHHHHH------HHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHH
Confidence 67777777777653 334444444333 45665554443333 23333221 111222223333 222344
Q ss_pred HHHHHHHHHcCCHHHHHHHHcc
Q 048812 232 NYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~~~~ 253 (645)
..++..+.+....+.+.++|.+
T Consensus 145 ~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 145 LEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHH
Confidence 4455556666666666666655
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.82 E-value=1.7e+02 Score=25.44 Aligned_cols=119 Identities=10% Similarity=0.005 Sum_probs=56.7
Q ss_pred HHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc
Q 048812 148 QLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKIS 227 (645)
Q Consensus 148 ~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 227 (645)
.+.+.+..+|...-...+..+.+.|.. +++..+.++... +|...-...+.++...++.+....+.. +. -.++
T Consensus 23 ~L~~~L~~~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l---~~~~ 94 (211)
T 3ltm_A 23 MYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIK-AL---KDED 94 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHH-HH---cCCC
Confidence 333344445555444555555555553 344444444432 355555555555555555433322222 22 1455
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCC
Q 048812 228 GSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276 (645)
Q Consensus 228 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~ 276 (645)
..+-...+.+..+.|+.+....+.+. ...++...-...+.++.+.|.
T Consensus 95 ~~vr~~a~~aL~~~~~~~~~~~L~~~--l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGDERAVEPLIKA--LKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHH--TTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHH--HhCCCHHHHHHHHHHHHHcCC
Confidence 56666666666666654433333333 334444444444555544444
No 285
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.29 E-value=1.4e+02 Score=26.42 Aligned_cols=197 Identities=12% Similarity=0.011 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCChh--hhhhHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHHcCChhHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQ--ISTQVFEFLVFTGDLGYAQQIIRQGDEP---EIKIWNSIIENQLINGYPQEVFAI 126 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 126 (645)
++.+ +...+++.|..++.. ...+.+...+..|+.+-+..+++....+ +...++.+..+ +.
T Consensus 22 g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~---------- 86 (237)
T 3b7b_A 22 GHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA-AK---------- 86 (237)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH-HH----------
T ss_pred CcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH-HH----------
Confidence 5654 555666677654432 2345666777888988888888765433 32233333333 22
Q ss_pred HHHHhhcCchhhccCChHHHHHHHccCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhh--HHHHH
Q 048812 127 YLYLVTRTVLLNKCGKLKEVCQLFDKLP----NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT--MVSLI 200 (645)
Q Consensus 127 ~~~m~~~~~~~~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll 200 (645)
.|+.+-+..+++.-+ .++..-++.|.. .++.|+. ++++.+.+.|..++... -.+.+
T Consensus 87 -------------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L 148 (237)
T 3b7b_A 87 -------------KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW-ATEYKHV----DLVKLLLSKGSDINIRDNEENICL 148 (237)
T ss_dssp -------------TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred -------------cCCHHHHHHHHhCCCCCcccCCCCCCCHHHH-HHHcCCH----HHHHHHHHCCCCCCccCCCCCCHH
Confidence 344555555554431 123333333333 3445554 44555556665554321 11223
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHHcCCHHHHHHHHcccCCCCC---ChhhHHHHHHHHHhcC
Q 048812 201 SARTKLRDLEMGKNLHLFLEESTMKISGS--LLNYLVDMYFKCGKIGEAQKLLGRYEIDEV---DVVLWTTLVSGYVKSN 275 (645)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~~~li~~~~~~g 275 (645)
...+..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+-+.-+++. ...+ |..-++ -+...+..|
T Consensus 149 ~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--gad~~~~d~~g~t-~l~~A~~~~ 221 (237)
T 3b7b_A 149 HWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSDVTLKNKEGET-PLQCASLNS 221 (237)
T ss_dssp HHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCC-HHHHSCTTC
T ss_pred HHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc--CCCCCccCCCCCC-HHHHHHHHH
Confidence 3333445554 445556666554322 122344555678888877777765 3332 222122 233345667
Q ss_pred CHHHHHHHHHhcc
Q 048812 276 ERDEARRLFDEMV 288 (645)
Q Consensus 276 ~~~~A~~~~~~m~ 288 (645)
+.+.++++.+.+.
T Consensus 222 ~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 222 QVWSALQMSKALQ 234 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776654
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.71 E-value=37 Score=28.55 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCC--HHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNE--RDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
.+.++.-|...|+.++|.+.++++..+.- ..+...++..++-+.+. .+.+..++..+...+.+|-..+..||.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~ 88 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 88 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 45678889899999999999998543321 34455566666666432 4567788888888888888888876653
No 287
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=39.89 E-value=7.8 Score=23.86 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=13.0
Q ss_pred cCCccccc-cCccccCCCC
Q 048812 627 DNGRFHRF-QGGQCSCRDY 644 (645)
Q Consensus 627 d~~~~h~~-~~g~csc~~~ 644 (645)
.|-.-|.. .+|.||||-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 34455555 6899999976
No 288
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.64 E-value=2.2e+02 Score=24.66 Aligned_cols=130 Identities=11% Similarity=-0.019 Sum_probs=72.9
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 048812 152 KLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLL 231 (645)
Q Consensus 152 ~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 231 (645)
.+..+|...-...+.++.+.+.. +++..+.++.. .+|...-...+.++...++.+....+. .+. -.++..+-
T Consensus 58 ~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l---~d~~~~vr 129 (211)
T 3ltm_A 58 ALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVEPLI-KAL---KDEDWFVR 129 (211)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHT---TCSSHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHHHHH-HHH---hCCCHHHH
Confidence 33345544444555666666653 34455555543 356666666777777777654333332 232 25677777
Q ss_pred HHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcc-cCCc
Q 048812 232 NYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNERDEARRLFDEMV-ERNL 292 (645)
Q Consensus 232 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~ 292 (645)
...+.++.+.|..+....+.+. ...+|...-...+.++.+.+.. ++...+..+. .++.
T Consensus 130 ~~a~~aL~~~~~~~~~~~L~~~--l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d~~~ 188 (211)
T 3ltm_A 130 IAAAFALGEIGDERAVEPLIKA--LKDEDGWVRQSAADALGEIGGE-RVRAAMEKLAETGTG 188 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHH--TTCSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhCCCH
Confidence 7777888887775444344443 3456666666677777777764 4444444443 4443
No 289
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.36 E-value=2.2e+02 Score=24.36 Aligned_cols=122 Identities=11% Similarity=0.011 Sum_probs=61.0
Q ss_pred HHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 048812 145 EVCQLFDKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTM 224 (645)
Q Consensus 145 ~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 224 (645)
.-..+++.+..+|...-...+.++.+.+.. .+...+.++.. .++...-...+.++...++.+....+.. +..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~--- 86 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK--- 86 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---
Confidence 333444455556665555566666666653 33344444443 2355555555556665555433333222 221
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHcccCCCCCChhhHHHHHHHHHhcCC
Q 048812 225 KISGSLLNYLVDMYFKCGKIGEAQKLLGRYEIDEVDVVLWTTLVSGYVKSNE 276 (645)
Q Consensus 225 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~ 276 (645)
.++..+-...+.++.+.|+.+....+.+. ...+|...-...+.++.+.+.
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~--l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDERAVEPLIKA--LKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHH--TTCSSHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhCC
Confidence 45666666666777776665433334333 334454444444555554444
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.25 E-value=2.6e+02 Score=25.21 Aligned_cols=112 Identities=8% Similarity=-0.011 Sum_probs=49.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCChh---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHH
Q 048812 164 MISCYTSMGMYREGLGLLSKMGAEGVSPDEV---TMVSLISARTKLRDLEMGKNLHLFLEESTMKISGS--LLNYLVDMY 238 (645)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y 238 (645)
.+...++.|+.+ +++.+.+.|..++.. .-.+.+...+..|+.+ +.+.+++.|..++.. ...+.+...
T Consensus 8 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 8 LLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 344455666653 334444445444322 1112333334445554 334444555443321 111233444
Q ss_pred HHcCCHHHHHHHHcccCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 239 FKCGKIGEAQKLLGRYEIDEV---DVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
+..|+.+-+..+++. ...+ |..-++.+. ..+..|+.+-...+++.
T Consensus 80 ~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSK--GADVNECDFYGFTAFM-EAAVYGKVKALKFLYKR 127 (285)
T ss_dssp HHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHH-HHHHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc--CCCCCccCcccCCHHH-HHHHhCCHHHHHHHHHh
Confidence 566777766666654 2222 222233333 33455666555555544
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.70 E-value=1.2e+02 Score=27.51 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=18.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 048812 164 MISCYTSMGMYREGLGLLSKMGA 186 (645)
Q Consensus 164 li~~~~~~g~~~~A~~~~~~m~~ 186 (645)
-+..+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46678888899999988887654
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.01 E-value=1.8e+02 Score=25.58 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCh--hhhhhHHHHHHhcCChHHHHHHHhhCCCCCcc----cHHHHHHHHHHcCChhHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDP--QISTQVFEFLVFTGDLGYAQQIIRQGDEPEIK----IWNSIIENQLINGYPQEVFA 125 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~ 125 (645)
++++ +...+++.|..++. ....+.+...++.|+.+-+..+++.....+.. .++.+..+ +..
T Consensus 20 g~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A-~~~-------- 86 (240)
T 3eu9_A 20 GIYE----RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA-TRQ-------- 86 (240)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH-HHH--------
T ss_pred CChH----HHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH-HHc--------
Confidence 6665 44555567755433 23445777888899999999888876643322 23333333 333
Q ss_pred HHHHHhhcCchhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh---hHHHH
Q 048812 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV---TMVSL 199 (645)
Q Consensus 126 ~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~l 199 (645)
|+.+-+..+++.-.. ++...++.|. ..+..|+.+ +++.+.+.|..++.. ..+.+
T Consensus 87 ---------------~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l 146 (240)
T 3eu9_A 87 ---------------GHLSMVVQLMKYGADPSLIDGEGCSCIH-LAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPL 146 (240)
T ss_dssp ---------------TCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ---------------CCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHHcCHHH----HHHHHHhcCCCccccCCCCCcHH
Confidence 334444444433222 2222333333 334456543 444455555554332 22334
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCchh---HHHHHHHHHHHcCCHHHHHHHHcccCCCCCC---hhhHHHHHHHHHh
Q 048812 200 ISARTKLRDLEMGKNLHLFLEESTMKISGS---LLNYLVDMYFKCGKIGEAQKLLGRYEIDEVD---VVLWTTLVSGYVK 273 (645)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~---~~~~~~li~~~~~ 273 (645)
..++...+..+ +...+.+.|..++.. ...+.+...++.|+.+-+.-+++. ...++ ..-++ -+...++
T Consensus 147 ~~a~~~~~~~~----~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t-~l~~A~~ 219 (240)
T 3eu9_A 147 MWAAYRTHSVD----PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGES-ALDLAKQ 219 (240)
T ss_dssp HHHHHHCCSST----THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCBCTTSCB-HHHHHHH
T ss_pred HHHHHhCChHH----HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC-HHHHHHH
Confidence 44443333232 223344555443322 122345556677888877777765 33332 22122 3344456
Q ss_pred cCCHHHHHHHHHhcc
Q 048812 274 SNERDEARRLFDEMV 288 (645)
Q Consensus 274 ~g~~~~A~~~~~~m~ 288 (645)
.|+.+-+.-+++...
T Consensus 220 ~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 220 RKNVWMINHLQEARQ 234 (240)
T ss_dssp TTCHHHHHHHHHHC-
T ss_pred cCcHHHHHHHHHhhh
Confidence 677766666655443
No 293
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.91 E-value=3.3e+02 Score=26.80 Aligned_cols=188 Identities=10% Similarity=0.076 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCChh--hhhhHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHHcCChhHHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQ--ISTQVFEFLVFTGDLGYAQQIIRQGDEP---EIKIWNSIIENQLINGYPQEVFAI 126 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 126 (645)
|+++ +...+++.|..++.. ...+.+...+..|+.+-+..+++..... |..-++.+.. .++.|+.+-+.-+
T Consensus 25 g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~~~~v~~L 99 (437)
T 1n11_A 25 GHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC-AARIGHTNMVKLL 99 (437)
T ss_dssp TCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH-HHHHTCHHHHHHH
T ss_pred CCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHHCCCHHHHHHH
Confidence 5654 444455566555432 2345566677788888888887765433 2222333333 3455555444333
Q ss_pred HHHHhhcC----------chhhccCChHHHHHHHccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 048812 127 YLYLVTRT----------VLLNKCGKLKEVCQLFDKLPNR---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDE 193 (645)
Q Consensus 127 ~~~m~~~~----------~~~~~~g~~~~A~~~f~~m~~~---~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 193 (645)
++.-...+ ...++.|+.+....+++.-... +..-++.| ...+..|+.+ +++.+.+.|..|+.
T Consensus 100 l~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g~~~~~ 174 (437)
T 1n11_A 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL-HVAAKYGKVR----VAELLLERDAHPNA 174 (437)
T ss_dssp HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCC
Confidence 33311100 2233456666666666543322 22222222 2334455543 33444445544432
Q ss_pred hh--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHHcCCHHHHHHHHcc
Q 048812 194 VT--MVSLISARTKLRDLEMGKNLHLFLEESTMKISGSL--LNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 194 ~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
.. -.+.+...+..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-+..+++.
T Consensus 175 ~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 175 AGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp CCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 21 111223333445544 3334444444332211 11233444566777776666654
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.77 E-value=4.3e+02 Score=29.76 Aligned_cols=91 Identities=3% Similarity=-0.140 Sum_probs=52.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC-----------------
Q 048812 396 LLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMP--IPP----------------- 456 (645)
Q Consensus 396 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p----------------- 456 (645)
++..|...|..+-+.++. . -+..+...--.+..+|...|++++|.+.|++.. +.+
T Consensus 816 l~~~L~~~~~~~~a~eL~----~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----h--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 556666777776655432 1 122233322346667788888888888888762 111
Q ss_pred ------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCc
Q 048812 457 ------DVSIWSSLLRACRCHQNVKLAEHAFKHLTE-TDPLND 492 (645)
Q Consensus 457 ------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~~ 492 (645)
...-|..++.-+-+++-++-+.+..+.+++ ..++++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 012455666666667777777777777665 334443
No 295
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.20 E-value=2.5e+02 Score=24.52 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=24.8
Q ss_pred HHHHHHcCCHHHHHHHHcccCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 235 VDMYFKCGKIGEAQKLLGRYEIDEV---DVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 235 i~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
+...+..|+.+-+..+++. ...+ |..-++. +...++.|+.+-+.-+++.
T Consensus 143 L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 143 MHRAAAKGNLKMVHILLFY--KASTNIQDTEGNTP-LHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhc--CCCccccCCCCCCH-HHHHHHCCCHHHHHHHHHC
Confidence 4444566777776666654 2222 2222223 3334566666655555544
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.10 E-value=1.3e+02 Score=24.31 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCCchhHHH
Q 048812 161 WNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD--LEMGKNLHLFLEESTMKISGSLLN 232 (645)
Q Consensus 161 ~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~ 232 (645)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+.+.|+-+......
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~ 82 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 82 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 467888899999999999999988521111 12233444445555432 345666777776666544443333
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.81 E-value=4.4e+02 Score=27.10 Aligned_cols=183 Identities=12% Similarity=0.138 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcccCCc-hhHHHHHHhhhccCCchhhhhhccccchhhHHHHHHHHHHcCCCCCc
Q 048812 261 VVLWTTLVSGYVKSNERDEARRLFDEMVERNL-ISWTLMISGMLNQDAEFKYKSCASIGALYHGIWVHVYIKKNQISIDN 339 (645)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~t~~~ll~~~~~~~~~~~~~a~~~~~~l~~g~~i~~~~~~~~~~~~~ 339 (645)
...+|.++..|...+.++.|..+..+..-|.. .+-+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~----------------------------------------- 269 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLE----------------------------------------- 269 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHH-----------------------------------------
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHH-----------------------------------------
Confidence 45688888999999999999999888765532 111111
Q ss_pred HHHHHHHHhhcCcCChhHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------H--HHHHHHHHhccCcHHHH
Q 048812 340 IELAYDLFSEISEKNVYLW-TSVIAAYAMAGHAQKAIDLFLEMEETGTKPDQV-------T--FIALLSACSHGGLVDEG 409 (645)
Q Consensus 340 ~~~A~~~f~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t--~~~ll~a~~~~g~~~~a 409 (645)
..| --+...++-.+++.+|.+.|...... .+++.. . |..++..+ .|.+.+
T Consensus 270 ----------------~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~~~a~gfr~~a~K~lI~V~LL--lG~iP~- 329 (523)
T 4b4t_S 270 ----------------ARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHNSKSLGFLQQSNKLHCCIQLL--MGDIPE- 329 (523)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCSSSCSHHHHHHHHHHHHHHHH--HTCCCC-
T ss_pred ----------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcchhhhhHHHHHHHHHHhHHhh--cCCCCC-
Confidence 111 12345566788888888888776653 122211 1 11111111 132221
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---
Q 048812 410 YDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCHQNVKLAEHAFKHLTE--- 486 (645)
Q Consensus 410 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~--- 486 (645)
..+|. .+++......|..|+.++ +.|++++-...++.-. ..+.+.|.+...+++-..+.+
T Consensus 330 r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~------------~~F~~Dgty~LI~rLr~~vir~~i 392 (523)
T 4b4t_S 330 LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK------------QLLLKDDTYQLCVRLRSNVIKTGI 392 (523)
T ss_dssp HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH------------HHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc------------ceeccCChhHHHHHHHHHHHHHHH
Confidence 11111 122222244577777776 7788877766666532 224455666555544443332
Q ss_pred --cCCCCchhHHHHHHHHHHcC--CchHHHHHHHHHHhCCC
Q 048812 487 --TDPLNDGAHVLLANIYAKAG--RLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 487 --~~p~~~~~y~~l~~~~~~~g--~~~~a~~~~~~m~~~~~ 523 (645)
+...... ..+.++..+.+ ..++|+.+...|...|.
T Consensus 393 rkis~~Ysr--IsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 393 RIISLTYKK--ISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp HHSCCCSSE--ECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred HHHHHHHhc--ccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 2221111 22333333332 34679998888887774
No 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=31.44 E-value=2.5e+02 Score=24.03 Aligned_cols=81 Identities=14% Similarity=0.010 Sum_probs=35.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 048812 155 NRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRDLEMGKNLHLFLEESTMKISGSLLNYL 234 (645)
Q Consensus 155 ~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 234 (645)
.++...-...+.++.+.+..+ ++..+..+.. .++...-...+.++...++.+... .+..+.+ .++..+-...
T Consensus 87 d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~-~L~~~l~---d~~~~vr~~A 158 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERAVE-PLIKALK---DEDGWVRQSA 158 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGGGHH-HHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHc---CCCHHHHHHH
Confidence 344444444455555555432 3333333332 234444444555555554433222 2222221 3445555555
Q ss_pred HHHHHHcCC
Q 048812 235 VDMYFKCGK 243 (645)
Q Consensus 235 i~~y~~~g~ 243 (645)
+.++.+.|.
T Consensus 159 ~~aL~~~~~ 167 (201)
T 3ltj_A 159 ADALGEIGG 167 (201)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCc
Confidence 555555554
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.35 E-value=2.4e+02 Score=24.67 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCChh---hhhhHHHHHHhcCChHHHHHHHhhCCCCC---cccHHHHHHHHHHcCChhHHHH
Q 048812 52 SSIDEFERIHSHLITTNLMRDPQ---ISTQVFEFLVFTGDLGYAQQIIRQGDEPE---IKIWNSIIENQLINGYPQEVFA 125 (645)
Q Consensus 52 ~~~~~~~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 125 (645)
++++ +...+++.|..++.. ...+.+...+..|+.+-+..+++....++ ...++.+..+ +..|
T Consensus 53 ~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~------- 120 (240)
T 3eu9_A 53 NRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA-AQFG------- 120 (240)
T ss_dssp TCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTT-------
T ss_pred CCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HHcC-------
Confidence 5654 556666777544322 24466777788999999888888755433 3333444333 3333
Q ss_pred HHHHHhhcCchhhccCChHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhh---HHHH
Q 048812 126 IYLYLVTRTVLLNKCGKLKEVCQLFDKLPN---RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVT---MVSL 199 (645)
Q Consensus 126 ~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~l 199 (645)
+.+-+..+++.-.. ++..-++.+..+..+ +...+..+++ .+.|..++... -.+.
T Consensus 121 ----------------~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~L---~~~~~~~~~~~~~~g~t~ 180 (240)
T 3eu9_A 121 ----------------HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRLL---LTFNVSVNLGDKYHKNTA 180 (240)
T ss_dssp ----------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHHH---HHTTCCTTCCCTTTCCCH
T ss_pred ----------------HHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHHH---HhcCCCcchhhccCCCcH
Confidence 34434444333222 233334444444333 3333333333 34444443221 1123
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHHcCCHHHHHHHHcc
Q 048812 200 ISARTKLRDLEMGKNLHLFLEESTMKISGSL--LNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 200 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
+...+..|+.+. .+.+++.|..++... ..+-+....+.|+.+-+.-+++.
T Consensus 181 L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 181 LHWAVLAGNTTV----ISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHTCHHH----HHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 444445566654 444455565544221 12345555777887777776665
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.18 E-value=1.6e+02 Score=26.74 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=52.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048812 361 VIAAYAMAGHAQKAIDLFLEMEET--GTKP----DQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVD 434 (645)
Q Consensus 361 li~~~~~~g~~~~A~~l~~~m~~~--g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 434 (645)
-+..+..+.++++|++++++..+. ++++ +.......+..-.....-.-+..+.+.+. -.++...-...+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~----~~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----SSNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH----TCSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHH
Confidence 467788899999999999887642 2332 11222223332222222222333333332 1455666777788
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 048812 435 LLGRAGHLEESANFITSM 452 (645)
Q Consensus 435 ~~~~~g~~~~A~~~~~~m 452 (645)
.+.|.|+-++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 999999999999987543
No 301
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.03 E-value=2.3e+02 Score=24.86 Aligned_cols=60 Identities=22% Similarity=0.136 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 048812 442 LEESANFITSMPIPPDVS-------IWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANI 501 (645)
Q Consensus 442 ~~~A~~~~~~m~~~pd~~-------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~ 501 (645)
++.|+.+++.+.-.-|.. .--..+..|.+.|.+++|.+++++.....+.+...-.-|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 456666666664332311 112234458888888888888888877666554443334333
No 302
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.16 E-value=2.2e+02 Score=27.19 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 048812 448 FITSMPIPPDV--SIWSSLLRACRCHQNVKLAEHAFKHLTETDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMG 522 (645)
Q Consensus 448 ~~~~m~~~pd~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~ 522 (645)
+|...+++|.. .++.+-++.+.+++|+..|..+.++++++.|... ..++|.+++..-...+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 45555666643 4677788889999999999999999999988532 2345777777666544
No 303
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.50 E-value=50 Score=25.23 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=31.0
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHH
Q 048812 141 GKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREGL 178 (645)
Q Consensus 141 g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~ 178 (645)
...+.|+++++.++.+...+|..++.++...|+..-|-
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999888899999999998777765553
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.04 E-value=1.5e+02 Score=24.59 Aligned_cols=37 Identities=3% Similarity=0.036 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 048812 406 VDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 406 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 443 (645)
.-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 42 ~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 42 HLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp CBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 33455555555432 22333334334445555555543
No 305
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=28.96 E-value=12 Score=19.91 Aligned_cols=13 Identities=38% Similarity=1.232 Sum_probs=9.2
Q ss_pred cccCccc--cCCCCC
Q 048812 633 RFQGGQC--SCRDYW 645 (645)
Q Consensus 633 ~~~~g~c--sc~~~~ 645 (645)
+|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 6778887 566655
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.78 E-value=98 Score=25.94 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCCchhHHH
Q 048812 160 SWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD--LEMGKNLHLFLEESTMKISGSLLN 232 (645)
Q Consensus 160 ~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~ 232 (645)
..+.+|.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+.+.|+-+......
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~ 84 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 84 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 3567888999999999999999998521110 12233444445554322 345666677776666544443333
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.76 E-value=1.3e+02 Score=27.11 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 048812 475 KLAEHAFKHLTE--TDPLNDGAHVLLANIYAKAGRLDDMSRIRMKLRDMGL 523 (645)
Q Consensus 475 ~~a~~~~~~~~~--~~p~~~~~y~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 523 (645)
+....+|..|.. ++-.-+..|...+..|...|++.+|.++++.=.+++-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 467788888877 5567778888999999999999999999988776654
No 308
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.55 E-value=3.2e+02 Score=24.06 Aligned_cols=84 Identities=12% Similarity=0.218 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCc-C-C---hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 048812 340 IELAYDLFSEISE-K-N---VYLWTSVIAAYAMAGHAQKAIDLFLEMEETGTKPD-QVTFIALLSACSHGGLVDEGYDFL 413 (645)
Q Consensus 340 ~~~A~~~f~~~~~-~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~ 413 (645)
++.+.+.|..... + | +..|-..+..+ ..+...++.++|..|...|+--. +.-|......+...|++.+|.++|
T Consensus 60 LErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 60 MERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666765543 2 3 23454444443 23446688899999988887655 555666677777888999999988
Q ss_pred HHhHHhcCCCCC
Q 048812 414 SKKSRVYNIKPK 425 (645)
Q Consensus 414 ~~~~~~~~~~p~ 425 (645)
+.-. ..+-.|-
T Consensus 139 ~~GI-~~~A~P~ 149 (202)
T 3esl_A 139 ELGA-ENNCRPY 149 (202)
T ss_dssp HHHH-HTTCBSH
T ss_pred HHHH-HcCCccH
Confidence 8777 3455664
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.10 E-value=1.5e+02 Score=24.30 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=31.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHHcCCHH
Q 048812 380 EMEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVYNIKPKMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 380 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 443 (645)
.|.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 34556666554322 2333333334444566666666532 33334445555556666666654
No 310
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.75 E-value=1.5e+02 Score=25.53 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHhCCCCCC
Q 048812 427 QHYGCMVDLLGRAG-HLEESANFITSMPIPPD 457 (645)
Q Consensus 427 ~~~~~li~~~~~~g-~~~~A~~~~~~m~~~pd 457 (645)
....-++..+.+.| .++.+..+++.+...||
T Consensus 137 ~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~~ 168 (177)
T 3e3v_A 137 NKQNKIKQSLLTKGFSYDIIDTIIQELDLIFD 168 (177)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCcCCCC
Confidence 34445555666666 34445555555433333
No 311
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.43 E-value=2.2e+02 Score=27.40 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcC-CHHHHHHHHHhcccCCchhHHHHHHhhh
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSN-ERDEARRLFDEMVERNLISWTLMISGML 303 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~t~~~ll~~~~ 303 (645)
...++.=|...|++++|...++++..+.. ..+....+..++-+.. ..+.+..++..+.+.+.+|...+..||.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 35678888889999999999998432211 2233333444443322 2345566677777777777777776654
No 312
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.38 E-value=2.6e+02 Score=24.55 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=41.3
Q ss_pred hHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHhCC
Q 048812 160 SWNTMISCYTS---MGMYREGLGLLSKMGAEGVSPDEVTMVSLISARTKLRD-----LEMGKNLHLFLEESTM 224 (645)
Q Consensus 160 ~~n~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 224 (645)
..-.+|+++-+ ..+++.|+-.+-+|++.| .|.-..-..++-+....|. +..|...++.....|.
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33446666654 589999999999999999 6655555555556555543 2344445555555664
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.60 E-value=4.5e+02 Score=24.84 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHcccCCCCC-ChhhHHHHHHHHHhcCC--HHHHHHHHHhcccCCchhHHHHHHhhhc
Q 048812 231 LNYLVDMYFKCGKIGEAQKLLGRYEIDEV-DVVLWTTLVSGYVKSNE--RDEARRLFDEMVERNLISWTLMISGMLN 304 (645)
Q Consensus 231 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~t~~~ll~~~~~ 304 (645)
.+.++.-|...|+.++|.+.++++..+.- ..+...++..++-+.+. .+...+++..+...+.+|-..+..||.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45688889999999999999999544321 33455566666665433 4566788888888888888888877654
No 314
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.37 E-value=3.6e+02 Score=23.55 Aligned_cols=177 Identities=12% Similarity=-0.039 Sum_probs=82.5
Q ss_pred hhHHHHHHhcCChHHHHHHHhh----CC---CCCcccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHH
Q 048812 77 TQVFEFLVFTGDLGYAQQIIRQ----GD---EPEIKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQL 149 (645)
Q Consensus 77 ~~ll~~~~~~g~~~~A~~~f~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~ 149 (645)
.+.+...++.|+.+....+++. .. .+|..-++.+..+ +.. |+.+-+..+
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~-----------------------~~~~~v~~L 65 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA-VIT-----------------------TLPSVVRLL 65 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHT-----------------------TCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH-HHc-----------------------CCHHHHHHH
Confidence 3455666778888888888762 11 2333333444333 333 344444444
Q ss_pred HccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 048812 150 FDKLPNR---DVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPD---EVTMVSLISARTKLRDLEMGKNLHLFLEEST 223 (645)
Q Consensus 150 f~~m~~~---~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 223 (645)
++.-..+ |..-++.| ...+..|+.+-+..+++.....++.++ ....+.+. ..+..|+.+ +.+.+++.|
T Consensus 66 l~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g 139 (241)
T 1k1a_A 66 VTAGASPMALDRHGQTAA-HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQE----TVQLLLERG 139 (241)
T ss_dssp HHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTT
T ss_pred HHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHH----HHHHHHHcC
Confidence 4332222 22223333 333456666544444444322111222 12222222 233345544 444555566
Q ss_pred CCCchh---HHHHHHHHHHHcCCHHHHHHHHcccCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 048812 224 MKISGS---LLNYLVDMYFKCGKIGEAQKLLGRYEIDEV---DVVLWTTLVSGYVKSNERDEARRLFDE 286 (645)
Q Consensus 224 ~~~~~~---~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 286 (645)
..++.. ...+.+...++.|+.+-+.-+++. ...+ |..-++. +...+..|+.+-+.-+++.
T Consensus 140 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH--GANVNAQMYSGSSA-LHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCBCTTSCBH-HHHHHHHTCHHHHHHHHHT
T ss_pred CCcccccccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHhc
Confidence 544322 223345555677888877777765 3332 2222333 3334556776665555543
No 315
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.16 E-value=75 Score=16.80 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 048812 550 HSEEIYLMLNEIEMTLQQ 567 (645)
Q Consensus 550 ~~~~~~~~l~~l~~~m~~ 567 (645)
..+++|..|++|.+++++
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 356788888887777654
No 316
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=24.14 E-value=4.7e+02 Score=24.83 Aligned_cols=79 Identities=9% Similarity=0.018 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCchhHHH-HHH
Q 048812 425 KMQHYGCMVDLLGRAGHLEESANFITSMPIPPDVSIWSSLLRACRCH---QNVKLAEHAFKHLTETDPLNDGAHVL-LAN 500 (645)
Q Consensus 425 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~p~~~~~y~~-l~~ 500 (645)
++.....+...|.+.|++.+|+.-|- .+..-|...+..++--+... |... ....|.. .+-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~---------------e~dlf~~RaVL 196 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDS---------------TVAEFFSRLVF 196 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHH---------------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcc---------------hHHHHHHHHHH
Confidence 56777888888888888888887665 22111344444444443333 2222 2223321 233
Q ss_pred HHHHcCCchHHHHHHHHHH
Q 048812 501 IYAKAGRLDDMSRIRMKLR 519 (645)
Q Consensus 501 ~~~~~g~~~~a~~~~~~m~ 519 (645)
-|...|+...|..+++...
T Consensus 197 ~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 4556677777777777654
No 317
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.06 E-value=1.6e+02 Score=30.34 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--hHHH-HHHHHHHHHcCCHHHHHHHHHhC
Q 048812 390 QVTFIALLSACSHGGLVDEGYDFLSKKSRVYNI--KPK--MQHY-GCMVDLLGRAGHLEESANFITSM 452 (645)
Q Consensus 390 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~-~~li~~~~~~g~~~~A~~~~~~m 452 (645)
...++.++.-|.+.+.+++|..+..+.. +.. .++ ...| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3556777778888888888888877654 111 111 1222 23455666777888887776653
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.75 E-value=1.4e+02 Score=25.29 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCChHHHHHHHHHHHHcCCHH
Q 048812 372 QKAIDLFLE-MEETGTKPDQVTFIALLSACSHGGLVDEGYDFLSKKSRVY-NIKPKMQHYGCMVDLLGRAGHLE 443 (645)
Q Consensus 372 ~~A~~l~~~-m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~ 443 (645)
+++++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444544443 456677776533 345556666666667788888877431 33445555555567788888764
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.31 E-value=3.4e+02 Score=22.60 Aligned_cols=54 Identities=4% Similarity=-0.054 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch
Q 048812 175 REGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFLEESTMKISG 228 (645)
Q Consensus 175 ~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 228 (645)
+++.++|..|...||.-... -|......+...|++.+|.+++..-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44888999998888765543 5667777778889999999999888888777744
No 320
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.54 E-value=93 Score=28.16 Aligned_cols=181 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHhhc--CCHHHHHHHHHHHHHhCCCCCh------hhhhhHHHHHHhc---CChHHHHHHHhhCCCCC----------
Q 048812 45 IMVERSC--SSIDEFERIHSHLITTNLMRDP------QISTQVFEFLVFT---GDLGYAQQIIRQGDEPE---------- 103 (645)
Q Consensus 45 ~~~l~~~--~~~~~~~~~~~~~~~~g~~~~~------~~~~~ll~~~~~~---g~~~~A~~~f~~~~~~~---------- 103 (645)
..+..++ ++.+..+.+.+.+++.|..++. ....+.+...+.. |+.+-+..+++....++
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Q ss_pred ----cccHHHHHHHHHHcCChhHHHHHHHHHhhcCchhhccCChHHHHHHHccCCCCCcch---------------HHHH
Q 048812 104 ----IKIWNSIIENQLINGYPQEVFAIYLYLVTRTVLLNKCGKLKEVCQLFDKLPNRDVIS---------------WNTM 164 (645)
Q Consensus 104 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~g~~~~A~~~f~~m~~~~~~~---------------~n~l 164 (645)
..-++.|..+. ..|+.+-+..+++.-..++... -.+.
T Consensus 84 ~~~d~~g~t~L~~A~------------------------~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tp 139 (256)
T 2etb_A 84 TDEFYQGHSALHIAI------------------------EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139 (256)
T ss_dssp CSTTTTTCCHHHHHH------------------------HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSH
T ss_pred ccccccCCCHHHHHH------------------------HcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCH
Q ss_pred HHHHHhcCChHHHHHHHHHHhh---CCCCCChh--hHHHHHHHHhc--CCChH---HHHHHHHHHHHhCCCC--------
Q 048812 165 ISCYTSMGMYREGLGLLSKMGA---EGVSPDEV--TMVSLISARTK--LRDLE---MGKNLHLFLEESTMKI-------- 226 (645)
Q Consensus 165 i~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~--t~~~ll~~~~~--~~~~~---~a~~~~~~~~~~g~~~-------- 226 (645)
+...+..|+ .++++.+.+ .|..++.. .-.+.+...+. .+..+ ...++.+.+++.|..+
T Consensus 140 L~~A~~~~~----~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 215 (256)
T 2etb_A 140 LSLAACTKQ----WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215 (256)
T ss_dssp HHHHHHTTC----HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred HHHHHHcCC----HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Q ss_pred -chhHHHHHHHHHHHcCCHHHHHHHHcc
Q 048812 227 -SGSLLNYLVDMYFKCGKIGEAQKLLGR 253 (645)
Q Consensus 227 -~~~~~~~li~~y~~~g~~~~A~~~~~~ 253 (645)
......+-+..-++.|+.+-+.-+++.
T Consensus 216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 216 ISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHhC
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.14 E-value=3.7e+02 Score=24.07 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=54.5
Q ss_pred hHHHHHHHccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHH
Q 048812 143 LKEVCQLFDKLPN--RDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEV-TMVSLISARTKLRDLEMGKNLHLFL 219 (645)
Q Consensus 143 ~~~A~~~f~~m~~--~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 219 (645)
++.+.+.|...+. .|..-....|. |++. .+++.++|..|...||.-... -|......+...|++.+|.++|..-
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555655542 33332222222 3332 357788999999988765543 5677777788889999999999998
Q ss_pred HHhCCCCch
Q 048812 220 EESTMKISG 228 (645)
Q Consensus 220 ~~~g~~~~~ 228 (645)
++.+-.|-.
T Consensus 177 i~~~A~P~~ 185 (223)
T 4aez_C 177 KRMKAKPFL 185 (223)
T ss_dssp HHHTCBSHH
T ss_pred HHcCCccHH
Confidence 888777743
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.99 E-value=3.7e+02 Score=22.57 Aligned_cols=136 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCChhh--hhhHHHHHHhcCChHHHHHHHhhCC----CCCcccHHHHHHHHHHcCChhHHHHHHHHHh
Q 048812 58 ERIHSHLITTNLMRDPQI--STQVFEFLVFTGDLGYAQQIIRQGD----EPEIKIWNSIIENQLINGYPQEVFAIYLYLV 131 (645)
Q Consensus 58 ~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (645)
..+...+++.|..++... ..+.+...+..|+.+-+..+++... .+|..-++.+..+.
T Consensus 52 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~----------------- 114 (201)
T 3hra_A 52 IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA----------------- 114 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH-----------------
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH-----------------
Q ss_pred hcCchhhccCChHHHHHHH----ccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhhHH--HHHHHHhc
Q 048812 132 TRTVLLNKCGKLKEVCQLF----DKLPNRDVISWNTMISCYTSMGMYREGLGLLSKMGAEGVSPDEVTMV--SLISARTK 205 (645)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~f----~~m~~~~~~~~n~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~ 205 (645)
+.|+.+-+..++ .....+|..-++.|..+.........-.++++.+.+.|..|+..... +.+...+.
T Consensus 115 -------~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 187 (201)
T 3hra_A 115 -------EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187 (201)
T ss_dssp -------HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred -------HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHH
Q ss_pred CCChHHHHHHHH
Q 048812 206 LRDLEMGKNLHL 217 (645)
Q Consensus 206 ~~~~~~a~~~~~ 217 (645)
.|+.+-++-+.+
T Consensus 188 ~~~~~~~~~Ll~ 199 (201)
T 3hra_A 188 KGYTEISKILAQ 199 (201)
T ss_dssp HTCHHHHHHHHT
T ss_pred cCCHhHHHHHHh
No 323
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.61 E-value=1.3e+02 Score=22.44 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=31.0
Q ss_pred hccCChHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHH
Q 048812 138 NKCGKLKEVCQLFDKLPNRDVISWNTMISCYTSMGMYREG 177 (645)
Q Consensus 138 ~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A 177 (645)
+.....+.|+++++.++.+...+|..++.++.+.+...-|
T Consensus 47 ~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 47 NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 3456778888999888888888888888888887764433
No 324
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=20.34 E-value=28 Score=24.48 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=18.7
Q ss_pred eeEEEecCCccccccCccccCCC
Q 048812 621 REIVIRDNGRFHRFQGGQCSCRD 643 (645)
Q Consensus 621 ~~i~~rd~~~~h~~~~g~csc~~ 643 (645)
..|=+.|.+-.|+|+||+-+-+|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 46778899999999999976443
Done!