BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048813
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP 448
R L+L N++ ++S + +L L N LQ +PN F + +LK L L ++L +LP
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 449 VGI-SKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLH 506
G+ K+ +L +L+L+ + ++ LP G L NL LDL Y + L ++P + L++L
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLK 184
Query: 507 VLRMF 511
LR++
Sbjct: 185 DLRLY 189
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 16/148 (10%)
Query: 388 ARRLSLMHNQITNLSEIPTCP-HLLT----CFLNRNGLQMIPNDFFQFMPSLKVLNLSYS 442
++L L N+ LS +P+ H LT +LN N LQ +P F+ + +L+ L ++ +
Sbjct: 39 TKKLDLQSNK---LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 443 KLTNLPVGI-SKVVSLQHLDLSESDIEELPGEL-KALVNLKCLDLEYTRNLITIPRQLIS 500
KL LP+G+ ++V+L L L + ++ LP + +L L L L Y L ++P+ +
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFD 154
Query: 501 NLSRLHVLRMFG-----ASHNAFDEASE 523
L+ L LR++ AFD+ +E
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTE 182
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 402 SEIPTCPHLLTCFLN--RNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI-SKVVSLQ 458
+ +PT T +L+ N L+ +PN F + SL L L +KL +LP G+ +K+ SL
Sbjct: 20 TSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 459 HLDLSESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511
+L+LS + ++ LP G L LK L L T L ++P + L++L LR++
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLPDGVFDKLTQLKDLRLY 132
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 414 FLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI-SKVVSLQHLDLSESDIEELP- 471
+L N LQ +PN F + SL LNLS ++L +LP G+ K+ L+ L L+ + ++ LP
Sbjct: 58 YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117
Query: 472 GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVL 508
G L LK L L Y L ++P + L+ L +
Sbjct: 118 GVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSLQYI 153
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 387 KARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446
R L+L N++ ++S + +L L N LQ +PN F + +LK L L ++L +
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 447 LPVGI-SKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSR 504
LP G+ K+ +L +L L + ++ LP G L NL LDL+ + L ++P + L++
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQ 182
Query: 505 LHVLRM 510
L L +
Sbjct: 183 LKQLSL 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L NL +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL 171
Query: 503 SRLHVL 508
L L
Sbjct: 172 ENLDTL 177
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 431 MPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTR 489
+P L L+LS+++L +LP+ + +L LD+S + + LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GN 134
Query: 490 NLITIPRQLISNLSRLHVLRM 510
L T+P L++ +L L +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL 155
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L NL +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL 171
Query: 503 SRLHVL 508
L L
Sbjct: 172 ENLDTL 177
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 431 MPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTR 489
+P L L+LS+++L +LP+ + +L LD+S + + LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GN 134
Query: 490 NLITIPRQLISNLSRLHVLRM 510
L T+P L++ +L L +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL 155
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L NL +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL 171
Query: 503 SRLHVL 508
L L
Sbjct: 172 ENLDTL 177
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 431 MPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTR 489
+P L L+LS+++L +LP+ + +L LD+S + + LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GN 134
Query: 490 NLITIPRQLISNLSRLHVLRM 510
L T+P L++ +L L +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL 155
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L NL +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL 171
Query: 503 SRLHVLRM 510
L L +
Sbjct: 172 ENLDTLLL 179
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 55 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRL 113
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L NL +P L++ L
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGL 172
Query: 503 SRLHVLRM 510
L L +
Sbjct: 173 ENLDTLLL 180
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L +L +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNDLTELPAGLLNGL 171
Query: 503 SRLHVLRM 510
L L +
Sbjct: 172 ENLDTLLL 179
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L L +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGL 171
Query: 503 SRLHVLRM 510
L L +
Sbjct: 172 ENLDTLLL 179
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L L +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGL 171
Query: 503 SRLHVL 508
L L
Sbjct: 172 ENLDTL 177
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 431 MPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTR 489
+P L L+LS+++L +LP+ + +L LD+S + + LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GN 134
Query: 490 NLITIPRQLISNLSRLHVLRM 510
L T+P L++ +L L +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL 155
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L L +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGL 171
Query: 503 SRLHVLRM 510
L L +
Sbjct: 172 ENLDTLLL 179
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ + +L+L ++T L T P L T L+ N LQ +P Q +P+L VL++S+++L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRL 112
Query: 445 TNLPVG-ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL 502
T+LP+G + + LQ L L ++++ L PG L L+ L L L +P L++ L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPAGLLNGL 171
Query: 503 SRLHVL 508
L L
Sbjct: 172 ENLDTL 177
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 431 MPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTR 489
+P L L+LS+++L +LP+ + +L LD+S + + LP G L+ L L+ L L+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GN 134
Query: 490 NLITIPRQLISNLSRLHVLRM 510
L T+P L++ +L L +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL 155
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 415 LNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP-GE 473
L N L ++P+ F + LK L + +KLT LP GI ++ L HL L ++ ++ +P G
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 474 LKALVNL------------KCLDLEYTRNLI 492
L +L +C D+ Y RN +
Sbjct: 155 FDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 404 IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI-SKVVSLQHLDL 462
IPT +L ++N+ + + F + L LNL+ ++LT LPVG+ K+ L HL L
Sbjct: 38 IPTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 463 SESDIEELP----GELKALVNL---------KCLDLEYTRNLITIPRQLISNL 502
+ ++ +P LK+L ++ +C D+ Y +N I +++ L
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASIVNPL 148
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 391 LSLMHNQITNLS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV 449
L L + QI N+S I L +LN N L +P + + + +L+VL+LS+++LT+LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA 287
Query: 450 GISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLE 486
+ L++ ++ + LP E L NL+ L +E
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 436 VLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIP 495
L+LS ++ N+ I K L L L+ + + ELP E+K L NL+ LDL + R L ++P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLP 286
Query: 496 RQLIS 500
+L S
Sbjct: 287 AELGS 291
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 7/119 (5%)
Query: 375 GLVEAPDVRGWEKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRNGLQMIPNDFFQFMP 432
GL+ P +K L++ N I+ L S+I + L ++ N +Q + F+F
Sbjct: 11 GLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ 69
Query: 433 SLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTR 489
L+ L+LS++KL + + V+L+HLDLS + + LP E + LK L L T
Sbjct: 70 ELEYLDLSHNKL--VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 409 HLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSE-SDI 467
HL ++ GL +P+ QF L+ L L+ + L LP I+ + L+ L + ++
Sbjct: 105 HLQHXTIDAAGLXELPDTXQQFA-GLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163
Query: 468 EELP---------GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAF 518
ELP GE + LVNL+ L LE+T + ++P I+NL L L++ + +A
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLSAL 221
Query: 519 DEA 521
A
Sbjct: 222 GPA 224
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 386 EKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSK 443
E + L L +N+IT +S ++ C +L L NG+ I D F + SL+ L+LSY+
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 444 LTNLPVGISK-VVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLIT---IPRQLI 499
L+NL K + SL L+L + + L GE +L L + N+ T I R+
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 500 SNLSRLHVLRMFGASHNAFDEASEDSI 526
+ L+ L L + + +++ S SI
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSI 197
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 27/163 (16%)
Query: 387 KARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ R L L N+I L+ E + PHL LN N + + F + +L+ L L ++L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 445 TNLPVGI-SKVVSLQHLDLSESDIEELPGEL-KALVNLKCL-----DLEYTR-------- 489
+P+G+ + + +L LD+SE+ I L + + L NLK L DL Y
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 490 ----------NLITIPRQLISNLSRLHVLRMFGASHNAFDEAS 522
NL +IP + +S+L L VLR+ + NA + S
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 404 IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI-SKVVSLQHLDL 462
IPT L +LN N + + F + +L+ L + +KLT +P G+ K+ L LDL
Sbjct: 31 IPTDKQRL--WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88
Query: 463 SESDIEELP----GELKALVNL---------KCLDLEYTRNLI 492
+++ ++ +P LK+L ++ +C D+ Y RN +
Sbjct: 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQM----IPNDFFQFMPSLKVLNLSYSKL 444
+RL+ N+ N P L L+RNGL +DF SLK L+LS++ +
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGV 385
Query: 445 TNLPVGISKVVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTRNLITIPRQLISNL 502
+ + L+HLD S+++++ +L NL LD+ +T + + + L
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGL 444
Query: 503 SRLHVLRMFGASHNAFDE 520
S L VL+M G N+F E
Sbjct: 445 SSLEVLKMAG---NSFQE 459
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 386 EKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSK 443
E + L L +N+IT +S ++ C +L L NG+ I D F + SL+ L+LSY+
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 444 LTNLPVG-ISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLIT---IPRQLI 499
L+NL + SL L+L + + L GE +L L + N+ T I R+
Sbjct: 86 LSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQILRVGNMDTFTKIQRKDF 144
Query: 500 SNLSRLHVLRMFGASHNAFDEASEDSI 526
+ L+ L L + + +++ S SI
Sbjct: 145 AGLTFLEELEIDASDLQSYEPKSLKSI 171
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQM----IPNDFFQFMPSLKVLNLSYSKL 444
+RL+ N+ N P L L+RNGL +DF SLK L+LS++ +
Sbjct: 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI--SLKYLDLSFNGV 409
Query: 445 TNLPVGISKVVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTRNLITIPRQLISNL 502
+ + L+HLD S+++++ +L NL LD+ +T + + + L
Sbjct: 410 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGL 468
Query: 503 SRLHVLRMFGASHNAFDE 520
S L VL+M G N+F E
Sbjct: 469 SSLEVLKMAG---NSFQE 483
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQM----IPNDFFQFMPSLKVLNLSYSKL 444
+RL+ N+ N P L L+RNGL +DF SLK L+LS++ +
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGV 385
Query: 445 TNLPVGISKVVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTRNLITIPRQLISNL 502
+ + L+HLD S+++++ +L NL LD+ +T + + + L
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGL 444
Query: 503 SRLHVLRMFGASHNAFDE 520
S L VL+M G N+F E
Sbjct: 445 SSLEVLKMAG---NSFQE 459
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 361 IEKEKENFLVYAGVGLVEAP-DVRGWEKARRLSLMHNQITNL--SEIPTCPHLLTCFLNR 417
E E+ + Y+ L P D+ KA LSL N I+ L +I L L+
Sbjct: 28 FSNELESMVDYSNRNLTHVPKDLPPRTKA--LSLSQNSISELRMPDISFLSELRVLRLSH 85
Query: 418 NGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP 471
N ++ + F F L+ L++S+++L N + + SL+HLDLS +D + LP
Sbjct: 86 NRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCCPMASLRHLDLSFNDFDVLP 137
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 29/128 (22%)
Query: 343 EVKMHDVVRDMALWIACDIEKEKENFLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS 402
E K+ + +D+ E E L + + +E D+ + K RL L HNQI
Sbjct: 181 EAKLTGIPKDLP-------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI---- 229
Query: 403 EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDL 462
+MI N F+P+L+ L+L +KL+ +P G+ + LQ + L
Sbjct: 230 ------------------RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271
Query: 463 SESDIEEL 470
++I ++
Sbjct: 272 HTNNITKV 279
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 382 VRGWEKARRLSLMHNQITNL--SEIPTCP--------HLLTCFLNRNGLQMIPNDFFQFM 431
+ G EK L L HN + L P P HL L NG IP + F+ +
Sbjct: 510 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 569
Query: 432 PSLKVLNLSYSKLTNLPVGI-SKVVSLQHLDLSESDIEELPGEL--KALVNLKCLDLEY 487
LK+++L + L LP + + VSL+ L+L ++ I + ++ A NL LD+ +
Sbjct: 570 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 628
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 382 VRGWEKARRLSLMHNQITNL--SEIPTCP--------HLLTCFLNRNGLQMIPNDFFQFM 431
+ G EK L L HN + L P P HL L NG IP + F+ +
Sbjct: 505 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 564
Query: 432 PSLKVLNLSYSKLTNLPVGI-SKVVSLQHLDLSESDIEELPGEL--KALVNLKCLDLEY 487
LK+++L + L LP + + VSL+ L+L ++ I + ++ A NL LD+ +
Sbjct: 565 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 623
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 382 VRGWEKARRLSLMHNQITNL--SEIPTCP--------HLLTCFLNRNGLQMIPNDFFQFM 431
+ G EK L L HN + L P P HL L NG IP + F+ +
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559
Query: 432 PSLKVLNLSYSKLTNLPVGI-SKVVSLQHLDLSESDIEELPGEL--KALVNLKCLDLEY 487
LK+++L + L LP + + VSL+ L+L ++ I + ++ A NL LD+ +
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 433 SLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTRN 490
SLK L+LS++ + + + L+HLD S+++++ +L NL LD+ +T
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 491 LITIPRQLISNLSRLHVLRMFGASHNAFDE 520
+ + + LS L VL+M G N+F E
Sbjct: 139 RVAF-NGIFNGLSSLEVLKMAG---NSFQE 164
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 369 LVYAGVG-LVEAPDVRGWEKARRLSLM---HNQITNLSEIPTCPHLLTCFLNRNGLQMIP 424
+ Y G L E P +K +L L+ HN++ +L T L L+ N ++ IP
Sbjct: 552 IFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP 611
Query: 425 NDFFQFMPSLKVLNLSYSKLTNLP 448
DF F ++ L S++KL +P
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIP 635
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 417 RNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIE 468
++GL+ + D F F P L LNLS++ L +L + +SLQ L LS + +
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 38/169 (22%)
Query: 370 VYAGVGLVEA-PDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLN-RNGLQMIPNDF 427
+YA L++ PD+ +A L++ N +T+L E+P L N +GL +P +
Sbjct: 242 IYADNNLLKTLPDLPPSLEA--LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 299
Query: 428 F-------------QFMPSLKVLNLSYSKLTNLPVGISK----VVSLQHLDLSESDIEEL 470
+ PSL+ LN+S +KL LP + + S HL +++ EL
Sbjct: 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHL----AEVPEL 355
Query: 471 PGELKAL------------VNLKCLDLEYTRNLITIPRQLISNLSRLHV 507
P LK L + DL +L +P +L NL +LHV
Sbjct: 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP-ELPQNLKQLHV 403
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 395 HNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKV 454
+N + L E+ P L T + + N L+ +P+ PSL+ LN+ + LT+LP
Sbjct: 224 NNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLP---ELP 276
Query: 455 VSLQHLDLSE---SDIEELPGEL 474
SL LD+SE S + ELP L
Sbjct: 277 QSLTFLDVSENIFSGLSELPPNL 299
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 399 TNLSEIPTCPHLLTCFLN-------RNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI 451
N+ E+P+ HL N N L+ +P F MP LK LNL+ ++L ++P GI
Sbjct: 156 ANIEEMPS--HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
Query: 452 -SKVVSLQHL 460
++ SLQ +
Sbjct: 214 FDRLTSLQKI 223
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 375 GLVEAPDVRGWEKARRLSLMHN---QITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFM 431
L E PD G RL +H QI ++ HL L+RN ++ I F +
Sbjct: 54 NLREVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111
Query: 432 PSLKVLNLSYSKLTNLPVGISKVVS-LQHLDLSESDIEELPG-ELKALVNLKCLDLEYTR 489
+L L L ++LT +P G +S L+ L L + IE +P + +L+ LDL +
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171
Query: 490 NLITIPRQLISNLSRLHVLRM 510
L I LS L L +
Sbjct: 172 RLSYISEGAFEGLSNLRYLNL 192
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 368 FLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCF------LNRNGLQ 421
+L+ + G+ PDV +++ L N+ I + F LN+NG+Q
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 422 MIPNDFFQFMPSLKVLNLS-YSKLTNLPVGISKVVSLQH-LDLSESDIEELPGELKALVN 479
I N F L LNLS + L LP + S LD+S + I LP L N
Sbjct: 168 EIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLEN 224
Query: 480 LKCLDLEYTRNLITIP 495
LK L T NL +P
Sbjct: 225 LKKLRARSTYNLKKLP 240
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 408 PHLLTCFLNRNGLQMIPN-----DFFQFMPSLKVLNLSYSKLTNLPVGI-SKVVSLQHLD 461
P L FL N LQ+ D F+ + L+VL L+++ L +LP G+ S + +L+ L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 462 LSESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAF 518
L+ + + L +L A NL+ LD+ + L P +S L + +HN F
Sbjct: 511 LNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFVS-------LSVLDITHNKF 559
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 372 AGVGL--VEAPDVRGW-----EKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQM 422
AG G ++ PD + R L L H + +L+ T L L N +
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304
Query: 423 IPNDFFQFMPSLKVLNLSYSKLTNLP----VGISKVVSLQHLDLSESDIEELPGE-LKAL 477
I ++ F + +L+VLNLSY+ L L G+ KV ++DL ++ I + + K L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA---YIDLQKNHIAIIQDQTFKFL 361
Query: 478 VNLKCLDLE 486
L+ LDL
Sbjct: 362 EKLQTLDLR 370
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 392 SLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI 451
SL HN I++++ + P L + +L N + I + L L+L ++++++ V +
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI-VPL 171
Query: 452 SKVVSLQHLDLSESDIEELPGELKALVNLKCLDL 485
+ + LQ+L LS++ I +L+AL LK LD+
Sbjct: 172 AGLTKLQNLYLSKNHIS----DLRALAGLKNLDV 201
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNR-NGLQMIPNDFFQFMPSLKVLNLSYSKLTNL 447
+ LS+ NQ+ +L +P+ + L + NR L +P+ LK L +S ++LT+L
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPS-------GLKELIVSGNRLTSL 236
Query: 448 PVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLI 499
PV S+ L+ L +S + + LP L++L Y L +P LI
Sbjct: 237 PVLPSE---LKELMVSGNRLTSLPMLPSGLLSLSV----YRNQLTRLPESLI 281
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 434 LKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLIT 493
++VL+L++ LT L + +++ + HLDLS + + LP AL L+CL++ +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQASDNAL 498
Query: 494 IPRQLISNLSRLHVL 508
++NL RL L
Sbjct: 499 ENVDGVANLPRLQEL 513
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 434 LKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLIT 493
++VL+L++ LT L + +++ + HLDLS + + LP AL L+CL++ +
Sbjct: 443 VRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALP---PALAALRCLEVLQASDNAL 498
Query: 494 IPRQLISNLSRLHVL 508
++NL RL L
Sbjct: 499 ENVDGVANLPRLQEL 513
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 32/155 (20%)
Query: 387 KARRLSLMHN--QITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
R L+L N Q+ HL L++N ++ I F +PSL L L ++L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 445 TNLPVGISKVVS-LQHLDLSESDIEELP---------------GELK-----------AL 477
T +P + +S L+ L L + IE +P GELK L
Sbjct: 96 TTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 478 VNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512
VNL+ L+L NL IP ++ L RL L + G
Sbjct: 156 VNLRYLNLGMC-NLKDIPN--LTALVRLEELELSG 187
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 30/131 (22%)
Query: 409 HLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVS-LQHLDLSESDI 467
HL L++N ++ I F +PSL L L ++LT +P + +S L+ L L + I
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 468 EELP---------------GELK-----------ALVNLKCLDLEYTRNLITIPRQLISN 501
E +P GELK LVNL+ L+L NL IP ++
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC-NLKDIPN--LTA 176
Query: 502 LSRLHVLRMFG 512
L RL L + G
Sbjct: 177 LVRLEELELSG 187
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 392 SLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI 451
SL HN I++++ + P L + +L N + I + L L+L ++++++ V +
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPL 174
Query: 452 SKVVSLQHLDLSESDIEELPGELKALVNLKCLDL 485
+ + LQ+L LS++ I +L+AL LK LD+
Sbjct: 175 AGLTKLQNLYLSKNHI----SDLRALAGLKNLDV 204
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 433 SLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLK---CLDLEYTR 489
SL+ L+LS++ + + LQHLD S ++ + E A ++L+ LD+ YT
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTN 430
Query: 490 NLITIPRQLISNLSRLHVLRMFGAS 514
I + L+ L+ L+M G S
Sbjct: 431 TKIDFDGIFLG-LTSLNTLKMAGNS 454
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 433 SLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLK---CLDLEYTR 489
SL+ L+LS++ + + LQHLD S ++ + E A ++L+ LD+ YT
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTN 435
Query: 490 NLITIPRQLISNLSRLHVLRMFGAS 514
I + L+ L+ L+M G S
Sbjct: 436 TKIDFDGIFLG-LTSLNTLKMAGNS 459
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 375 GLVEAPDVRGWEKARRLSLMHN--QITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMP 432
GL E P R L+LM N Q+ HL L RN ++ I F +
Sbjct: 65 GLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123
Query: 433 SLKVLNLSYSKLTNLPVGISKVVS-LQHLDLSESDIEELPG 472
SL L L + LT +P G + +S L+ L L + IE +P
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS 164
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 406 TCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQHLDLSE 464
P L L RN L +P F P L L++S + L + SLQ+L LS
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 465 S-----DIEELPGELKALVNLKCL 483
+ D+ +P A V+ L
Sbjct: 181 NRLTHVDLSLIPSLFHANVSYNLL 204
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 391 LSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMI 423
L+L +NQIT++S I P++ FLN N L I
Sbjct: 71 LNLSNNQITDISPIQYLPNVTKLFLNGNKLTDI 103
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 389 RRLSLMHNQITNLSEIPTC----PHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444
+ LSL +NQ+ SE +L L+ N L + N F ++PSL+ L+L Y+ +
Sbjct: 225 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 445 TNL-PVGISKVVSLQHLDLSES 465
L P + +L++L L +
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKRA 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,340,611
Number of Sequences: 62578
Number of extensions: 632278
Number of successful extensions: 1369
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 166
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)