Query 048813
Match_columns 552
No_of_seqs 362 out of 3124
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 13:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-77 4E-82 645.9 36.6 535 2-551 65-677 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.9E-49 6.2E-54 449.7 28.6 470 13-515 109-693 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.6E-39 5.7E-44 316.7 11.9 230 82-313 1-284 (287)
4 KOG0617 Ras suppressor protein 99.5 3E-16 6.4E-21 131.9 -4.3 130 379-511 26-158 (264)
5 KOG0444 Cytoskeletal regulator 99.4 6.7E-14 1.5E-18 139.7 -1.5 147 367-516 35-186 (1255)
6 KOG0617 Ras suppressor protein 99.3 5.6E-14 1.2E-18 118.3 -3.2 128 381-511 51-181 (264)
7 PLN00113 leucine-rich repeat r 99.3 1.1E-11 2.5E-16 141.8 11.6 128 384-512 116-245 (968)
8 PLN00113 leucine-rich repeat r 99.2 2.6E-11 5.5E-16 138.9 11.5 129 384-513 138-270 (968)
9 KOG0472 Leucine-rich repeat pr 99.2 2.7E-12 5.8E-17 122.2 0.7 110 379-489 199-308 (565)
10 KOG0444 Cytoskeletal regulator 99.2 2.5E-12 5.5E-17 128.6 0.3 127 379-510 96-229 (1255)
11 KOG4194 Membrane glycoprotein 99.2 3.4E-12 7.3E-17 126.9 -0.9 142 379-524 238-383 (873)
12 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.3E-15 103.0 5.3 133 380-515 13-152 (175)
13 KOG0618 Serine/threonine phosp 99.1 3.2E-11 7E-16 126.3 0.5 135 379-519 302-465 (1081)
14 PLN03210 Resistant to P. syrin 99.0 1.1E-09 2.4E-14 126.1 11.8 126 386-515 589-716 (1153)
15 PRK04841 transcriptional regul 99.0 1.2E-08 2.5E-13 116.4 18.7 252 72-358 9-332 (903)
16 KOG0472 Leucine-rich repeat pr 99.0 1E-10 2.2E-15 111.6 0.3 127 393-526 419-547 (565)
17 KOG4194 Membrane glycoprotein 98.9 6.7E-10 1.5E-14 110.9 4.4 128 382-510 169-300 (873)
18 PRK00411 cdc6 cell division co 98.9 1.4E-08 3E-13 104.1 13.6 117 75-192 28-150 (394)
19 PF14580 LRR_9: Leucine-rich r 98.9 1.9E-09 4.2E-14 95.0 6.1 121 367-487 22-149 (175)
20 KOG0618 Serine/threonine phosp 98.9 1.8E-10 4E-15 120.7 -1.1 127 385-515 358-488 (1081)
21 TIGR03015 pepcterm_ATPase puta 98.9 1.3E-07 2.9E-12 91.4 18.4 90 96-192 41-135 (269)
22 TIGR02928 orc1/cdc6 family rep 98.8 3.3E-08 7.3E-13 100.2 13.3 116 76-192 14-141 (365)
23 PRK15370 E3 ubiquitin-protein 98.8 2.9E-08 6.4E-13 107.5 12.1 100 387-495 200-299 (754)
24 PRK15387 E3 ubiquitin-protein 98.7 5E-08 1.1E-12 105.2 11.4 117 386-522 242-358 (788)
25 KOG0532 Leucine-rich repeat (L 98.7 2E-09 4.2E-14 107.4 -2.1 132 381-519 116-247 (722)
26 PRK15370 E3 ubiquitin-protein 98.7 6.3E-08 1.4E-12 105.0 9.0 116 386-513 283-398 (754)
27 KOG4658 Apoptotic ATPase [Sign 98.7 3.4E-08 7.3E-13 108.7 7.0 119 369-488 528-652 (889)
28 PRK15387 E3 ubiquitin-protein 98.6 7.5E-08 1.6E-12 103.9 8.5 119 386-521 342-460 (788)
29 cd01128 rho_factor Transcripti 98.6 1.2E-07 2.6E-12 89.1 8.4 94 96-192 14-115 (249)
30 KOG1259 Nischarin, modulator o 98.6 6E-09 1.3E-13 96.0 -0.6 126 383-512 281-408 (490)
31 PTZ00202 tuzin; Provisional 98.6 8.4E-07 1.8E-11 87.4 13.4 77 73-158 258-337 (550)
32 PF13191 AAA_16: AAA ATPase do 98.6 2E-07 4.4E-12 84.5 8.2 44 79-122 2-48 (185)
33 PF13401 AAA_22: AAA domain; P 98.6 1.5E-07 3.3E-12 80.0 6.9 93 98-192 4-99 (131)
34 PRK00080 ruvB Holliday junctio 98.5 8.6E-07 1.9E-11 88.1 12.8 109 76-192 24-141 (328)
35 KOG1259 Nischarin, modulator o 98.5 1.8E-08 4E-13 92.9 -0.2 109 385-496 306-416 (490)
36 COG2909 MalT ATP-dependent tra 98.5 1.5E-06 3.2E-11 91.7 13.6 252 77-359 19-339 (894)
37 KOG0532 Leucine-rich repeat (L 98.5 1.6E-08 3.5E-13 101.1 -0.8 141 369-513 126-270 (722)
38 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.5E-12 68.7 3.4 56 433-488 2-59 (61)
39 PF01637 Arch_ATPase: Archaeal 98.5 2.9E-07 6.3E-12 86.9 7.1 44 79-122 1-44 (234)
40 cd00009 AAA The AAA+ (ATPases 98.5 1.2E-06 2.6E-11 75.9 10.3 96 80-192 1-96 (151)
41 cd00116 LRR_RI Leucine-rich re 98.4 1.4E-07 3.1E-12 93.7 4.2 130 383-514 78-232 (319)
42 TIGR00635 ruvB Holliday juncti 98.4 6.5E-06 1.4E-10 81.2 15.9 109 77-193 4-121 (305)
43 PLN03150 hypothetical protein; 98.4 6.7E-07 1.5E-11 96.4 9.5 103 409-512 419-524 (623)
44 PRK09376 rho transcription ter 98.4 5.6E-07 1.2E-11 88.2 7.9 92 97-192 168-268 (416)
45 COG4886 Leucine-rich repeat (L 98.4 2.1E-07 4.6E-12 95.4 4.4 122 387-511 141-263 (394)
46 COG1474 CDC6 Cdc6-related prot 98.4 5.1E-06 1.1E-10 82.8 13.2 113 77-192 17-135 (366)
47 PF13855 LRR_8: Leucine rich r 98.4 3.8E-07 8.2E-12 65.9 3.5 58 409-466 2-60 (61)
48 cd00116 LRR_RI Leucine-rich re 98.3 4.1E-07 9E-12 90.3 4.7 82 408-489 137-232 (319)
49 KOG4237 Extracellular matrix p 98.3 6.8E-08 1.5E-12 92.5 -2.1 102 410-512 69-173 (498)
50 COG3903 Predicted ATPase [Gene 98.3 2.3E-06 4.9E-11 83.5 8.1 243 97-358 13-314 (414)
51 PTZ00112 origin recognition co 98.3 7.8E-06 1.7E-10 87.2 12.6 116 76-192 754-881 (1164)
52 TIGR00767 rho transcription te 98.3 3E-06 6.6E-11 83.6 8.8 95 96-192 166-267 (415)
53 PF05729 NACHT: NACHT domain 98.3 1.4E-06 2.9E-11 77.5 5.9 86 99-193 1-94 (166)
54 PLN03150 hypothetical protein; 98.2 3.1E-06 6.8E-11 91.2 9.1 80 433-513 419-500 (623)
55 PRK11331 5-methylcytosine-spec 98.2 8.4E-06 1.8E-10 81.9 11.4 109 77-193 175-285 (459)
56 COG4886 Leucine-rich repeat (L 98.2 8.9E-07 1.9E-11 90.8 4.4 163 382-550 112-285 (394)
57 KOG3207 Beta-tubulin folding c 98.2 3.9E-07 8.5E-12 88.6 0.4 105 385-489 196-312 (505)
58 KOG3207 Beta-tubulin folding c 98.1 5.1E-07 1.1E-11 87.8 -0.0 160 381-550 141-309 (505)
59 PF12799 LRR_4: Leucine Rich r 98.1 5.1E-06 1.1E-10 55.0 4.4 39 456-495 2-40 (44)
60 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.7E-11 55.8 3.6 40 432-471 1-40 (44)
61 KOG2543 Origin recognition com 98.1 2.9E-05 6.2E-10 74.8 11.0 115 76-196 5-131 (438)
62 KOG1859 Leucine-rich repeat pr 98.0 2.3E-07 5E-12 95.4 -4.3 132 375-512 98-263 (1096)
63 COG2256 MGS1 ATPase related to 98.0 7.8E-06 1.7E-10 79.3 6.1 44 79-122 26-72 (436)
64 KOG4579 Leucine-rich repeat (L 98.0 6.1E-07 1.3E-11 73.5 -1.7 107 390-497 31-141 (177)
65 PF13173 AAA_14: AAA domain 98.0 5.6E-06 1.2E-10 70.0 3.7 93 99-214 3-95 (128)
66 KOG4237 Extracellular matrix p 97.9 9.4E-07 2E-11 84.9 -2.0 124 387-511 68-196 (498)
67 PRK04195 replication factor C 97.9 0.00034 7.4E-09 73.3 16.0 46 77-122 14-63 (482)
68 PRK13342 recombination factor 97.9 2.7E-05 5.8E-10 79.9 6.9 46 77-122 12-60 (413)
69 KOG2028 ATPase related to the 97.8 4.5E-05 9.7E-10 72.8 7.4 91 79-191 140-233 (554)
70 KOG1644 U2-associated snRNP A' 97.8 2.9E-05 6.2E-10 68.3 4.7 102 387-488 43-150 (233)
71 KOG0531 Protein phosphatase 1, 97.8 4.3E-06 9.2E-11 86.1 -0.9 105 382-489 91-197 (414)
72 PRK08118 topology modulation p 97.7 1.9E-05 4.1E-10 70.0 2.9 36 99-134 2-37 (167)
73 PF05621 TniB: Bacterial TniB 97.7 0.00043 9.3E-09 65.9 11.7 113 77-191 34-156 (302)
74 KOG0531 Protein phosphatase 1, 97.7 1.1E-05 2.5E-10 82.9 1.2 139 368-512 99-241 (414)
75 PRK15386 type III secretion pr 97.7 0.00012 2.6E-09 73.0 8.2 112 386-512 52-186 (426)
76 PF05496 RuvB_N: Holliday junc 97.7 5.6E-05 1.2E-09 68.5 5.4 47 76-122 23-74 (233)
77 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.00016 3.4E-09 67.9 8.8 54 82-138 22-75 (226)
78 PRK15386 type III secretion pr 97.7 8.3E-05 1.8E-09 74.0 7.0 101 404-517 48-170 (426)
79 TIGR02903 spore_lon_C ATP-depe 97.7 0.00064 1.4E-08 73.0 14.1 47 76-122 153-199 (615)
80 KOG3665 ZYG-1-like serine/thre 97.7 3E-05 6.5E-10 83.6 3.8 128 387-518 123-262 (699)
81 PF04665 Pox_A32: Poxvirus A32 97.7 4E-05 8.6E-10 71.0 3.9 35 100-137 15-49 (241)
82 smart00382 AAA ATPases associa 97.6 0.00017 3.8E-09 61.6 7.4 89 99-194 3-92 (148)
83 KOG4579 Leucine-rich repeat (L 97.6 1.1E-05 2.4E-10 66.3 -0.4 110 410-524 29-141 (177)
84 PRK13341 recombination factor 97.6 0.00015 3.2E-09 78.7 7.9 46 77-122 28-76 (725)
85 KOG3665 ZYG-1-like serine/thre 97.6 4.6E-05 1E-09 82.2 3.9 133 408-551 122-259 (699)
86 PRK07261 topology modulation p 97.6 0.00026 5.6E-09 63.1 7.6 35 100-134 2-36 (171)
87 PRK06893 DNA replication initi 97.6 0.00034 7.4E-09 65.6 8.8 39 97-138 38-76 (229)
88 PRK10536 hypothetical protein; 97.5 0.0011 2.5E-08 61.8 11.7 53 79-134 57-109 (262)
89 CHL00095 clpC Clp protease ATP 97.5 0.00031 6.7E-09 78.4 9.6 45 78-122 180-224 (821)
90 PF00004 AAA: ATPase family as 97.5 0.00023 5E-09 60.3 6.7 22 101-122 1-22 (132)
91 COG3899 Predicted ATPase [Gene 97.5 0.0013 2.9E-08 73.1 13.8 44 79-122 2-48 (849)
92 KOG1859 Leucine-rich repeat pr 97.5 3E-06 6.5E-11 87.5 -6.5 122 384-512 162-288 (1096)
93 PLN03025 replication factor C 97.5 0.00068 1.5E-08 67.1 10.0 46 77-122 13-58 (319)
94 KOG1644 U2-associated snRNP A' 97.5 0.00015 3.2E-09 63.9 4.6 124 388-514 21-151 (233)
95 PRK00440 rfc replication facto 97.5 0.00053 1.1E-08 68.1 9.2 46 77-122 17-62 (319)
96 PRK08727 hypothetical protein; 97.5 0.00062 1.3E-08 64.0 9.1 59 76-137 18-77 (233)
97 PRK12377 putative replication 97.4 0.0015 3.2E-08 61.6 11.4 75 97-191 100-174 (248)
98 PRK05564 DNA polymerase III su 97.4 0.00051 1.1E-08 67.8 8.8 60 77-136 4-67 (313)
99 PRK08084 DNA replication initi 97.4 0.00056 1.2E-08 64.4 8.6 57 79-138 25-82 (235)
100 TIGR02639 ClpA ATP-dependent C 97.4 0.00035 7.6E-09 77.0 8.2 45 78-122 183-227 (731)
101 PRK07003 DNA polymerase III su 97.4 0.0004 8.6E-09 74.0 8.1 46 77-122 16-62 (830)
102 PRK12608 transcription termina 97.4 0.0014 3E-08 64.7 11.1 104 87-192 121-232 (380)
103 PRK14949 DNA polymerase III su 97.4 0.0007 1.5E-08 73.6 9.6 46 77-122 16-62 (944)
104 PRK14963 DNA polymerase III su 97.4 0.00095 2.1E-08 69.7 10.3 46 77-122 14-60 (504)
105 PRK03992 proteasome-activating 97.4 0.00058 1.3E-08 69.3 8.4 44 79-122 133-189 (389)
106 PRK12323 DNA polymerase III su 97.4 0.00064 1.4E-08 71.4 8.7 46 77-122 16-62 (700)
107 PRK14961 DNA polymerase III su 97.4 0.0016 3.4E-08 65.7 11.3 46 77-122 16-62 (363)
108 KOG0991 Replication factor C, 97.4 0.00082 1.8E-08 60.5 8.0 64 78-142 28-91 (333)
109 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00083 1.8E-08 74.8 10.0 45 78-122 188-232 (852)
110 KOG2227 Pre-initiation complex 97.4 0.0019 4.1E-08 64.3 11.2 112 76-192 149-268 (529)
111 PRK10865 protein disaggregatio 97.4 0.0007 1.5E-08 75.6 9.3 44 79-122 180-223 (857)
112 PRK14962 DNA polymerase III su 97.3 0.0011 2.4E-08 68.6 10.0 46 77-122 14-60 (472)
113 PRK14960 DNA polymerase III su 97.3 0.00074 1.6E-08 71.2 8.4 46 77-122 15-61 (702)
114 TIGR01242 26Sp45 26S proteasom 97.3 0.00065 1.4E-08 68.6 7.9 45 78-122 123-180 (364)
115 TIGR03689 pup_AAA proteasome A 97.3 0.00086 1.9E-08 69.5 8.6 45 78-122 183-240 (512)
116 PF05673 DUF815: Protein of un 97.3 0.0011 2.4E-08 61.1 8.3 47 76-122 26-76 (249)
117 PRK14956 DNA polymerase III su 97.3 0.00046 1E-08 70.4 6.3 46 77-122 18-64 (484)
118 PRK14955 DNA polymerase III su 97.3 0.0016 3.6E-08 66.4 10.3 46 77-122 16-62 (397)
119 PF13207 AAA_17: AAA domain; P 97.3 0.00024 5.1E-09 59.3 3.5 23 100-122 1-23 (121)
120 PRK07952 DNA replication prote 97.3 0.0036 7.7E-08 58.8 11.5 88 85-191 84-173 (244)
121 PRK09361 radB DNA repair and r 97.3 0.0017 3.6E-08 60.9 9.5 89 97-190 22-117 (225)
122 PF00448 SRP54: SRP54-type pro 97.2 0.0014 3E-08 59.6 8.1 89 98-189 1-92 (196)
123 PRK14964 DNA polymerase III su 97.2 0.002 4.3E-08 66.6 9.9 45 77-121 13-58 (491)
124 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0011 2.3E-08 74.4 8.5 44 79-122 175-218 (852)
125 PRK08691 DNA polymerase III su 97.2 0.002 4.4E-08 68.6 9.9 46 77-122 16-62 (709)
126 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00053 1.1E-08 67.3 5.2 45 78-122 52-102 (361)
127 PRK06696 uridine kinase; Valid 97.2 0.0012 2.7E-08 61.6 7.6 42 81-122 2-46 (223)
128 cd01393 recA_like RecA is a b 97.2 0.0045 9.7E-08 58.0 11.4 91 97-191 18-125 (226)
129 TIGR02237 recomb_radB DNA repa 97.1 0.0018 4E-08 59.8 8.4 48 97-148 11-58 (209)
130 PTZ00454 26S protease regulato 97.1 0.0015 3.1E-08 66.3 8.0 44 79-122 147-203 (398)
131 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0037 8E-08 58.9 10.4 93 97-191 18-126 (235)
132 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0021 4.6E-08 60.9 8.5 93 97-192 68-175 (274)
133 PRK08116 hypothetical protein; 97.1 0.0019 4.2E-08 61.9 8.4 74 99-190 115-188 (268)
134 COG2255 RuvB Holliday junction 97.1 0.00087 1.9E-08 62.4 5.6 46 77-122 26-76 (332)
135 cd01394 radB RadB. The archaea 97.1 0.004 8.7E-08 58.0 10.3 43 97-142 18-60 (218)
136 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0019 4.1E-08 66.2 8.4 92 77-191 190-293 (802)
137 PRK14957 DNA polymerase III su 97.1 0.0026 5.6E-08 66.7 9.7 46 77-122 16-62 (546)
138 PF08423 Rad51: Rad51; InterP 97.1 0.0055 1.2E-07 58.3 11.0 94 97-191 37-144 (256)
139 KOG2120 SCF ubiquitin ligase, 97.1 4.7E-05 1E-09 70.9 -3.0 130 384-515 208-350 (419)
140 KOG0989 Replication factor C, 97.0 0.00088 1.9E-08 63.0 5.1 64 77-141 36-100 (346)
141 TIGR02012 tigrfam_recA protein 97.0 0.0019 4.1E-08 62.9 7.7 87 97-191 54-144 (321)
142 cd00983 recA RecA is a bacter 97.0 0.0018 4E-08 63.1 7.5 87 97-191 54-144 (325)
143 PRK05642 DNA replication initi 97.0 0.0025 5.4E-08 59.9 8.2 38 98-138 45-82 (234)
144 TIGR02397 dnaX_nterm DNA polym 97.0 0.006 1.3E-07 61.5 11.6 46 77-122 14-60 (355)
145 PRK11034 clpA ATP-dependent Cl 97.0 0.0026 5.6E-08 69.6 9.4 45 78-122 187-231 (758)
146 PRK12402 replication factor C 97.0 0.00081 1.7E-08 67.3 5.1 46 77-122 15-60 (337)
147 PRK14958 DNA polymerase III su 97.0 0.0031 6.7E-08 66.1 9.5 46 77-122 16-62 (509)
148 PRK05541 adenylylsulfate kinas 97.0 0.0022 4.7E-08 57.5 7.3 36 97-135 6-41 (176)
149 PTZ00361 26 proteosome regulat 97.0 0.0018 4E-08 66.0 7.5 44 79-122 185-241 (438)
150 KOG2982 Uncharacterized conser 97.0 0.00076 1.6E-08 63.0 4.0 83 406-488 69-156 (418)
151 PRK14970 DNA polymerase III su 97.0 0.0025 5.5E-08 64.5 8.2 46 77-122 17-63 (367)
152 PRK07940 DNA polymerase III su 97.0 0.0026 5.7E-08 64.3 8.1 46 77-122 5-60 (394)
153 PRK09354 recA recombinase A; P 96.9 0.0026 5.7E-08 62.5 7.7 87 97-191 59-149 (349)
154 PHA02544 44 clamp loader, smal 96.9 0.0029 6.2E-08 62.7 7.9 46 77-122 21-67 (316)
155 PRK05896 DNA polymerase III su 96.9 0.0028 6E-08 66.7 7.9 46 77-122 16-62 (605)
156 COG1875 NYN ribonuclease and A 96.9 0.0019 4.2E-08 62.2 5.9 52 81-132 228-279 (436)
157 PRK06645 DNA polymerase III su 96.9 0.0064 1.4E-07 63.4 10.3 46 77-122 21-67 (507)
158 TIGR02238 recomb_DMC1 meiotic 96.8 0.0092 2E-07 58.4 10.6 94 97-191 95-202 (313)
159 PF00308 Bac_DnaA: Bacterial d 96.8 0.006 1.3E-07 56.7 8.9 95 79-192 11-109 (219)
160 PRK14969 DNA polymerase III su 96.8 0.0071 1.5E-07 63.8 10.4 46 77-122 16-62 (527)
161 PRK09111 DNA polymerase III su 96.8 0.003 6.4E-08 67.3 7.6 46 77-122 24-70 (598)
162 PF07728 AAA_5: AAA domain (dy 96.8 0.0011 2.5E-08 56.7 3.7 42 101-148 2-43 (139)
163 PRK15455 PrkA family serine pr 96.8 0.0016 3.4E-08 67.4 5.2 48 75-122 74-127 (644)
164 PRK14950 DNA polymerase III su 96.8 0.0031 6.7E-08 67.6 7.7 46 77-122 16-62 (585)
165 cd01120 RecA-like_NTPases RecA 96.8 0.0084 1.8E-07 52.6 9.3 40 100-142 1-40 (165)
166 PRK06547 hypothetical protein; 96.8 0.002 4.4E-08 57.2 5.1 34 89-122 6-39 (172)
167 PF00485 PRK: Phosphoribulokin 96.8 0.0089 1.9E-07 54.5 9.4 83 100-184 1-87 (194)
168 COG1484 DnaC DNA replication p 96.8 0.0082 1.8E-07 57.0 9.4 91 81-191 87-178 (254)
169 PRK07764 DNA polymerase III su 96.8 0.0035 7.6E-08 69.2 7.8 46 77-122 15-61 (824)
170 COG0572 Udk Uridine kinase [Nu 96.8 0.0043 9.2E-08 56.3 6.9 79 97-181 7-85 (218)
171 CHL00181 cbbX CbbX; Provisiona 96.8 0.011 2.3E-07 57.4 10.2 45 78-122 24-83 (287)
172 TIGR01241 FtsH_fam ATP-depende 96.7 0.003 6.4E-08 66.6 6.8 46 77-122 55-112 (495)
173 PRK00771 signal recognition pa 96.7 0.015 3.1E-07 59.6 11.4 90 97-190 94-185 (437)
174 KOG0735 AAA+-type ATPase [Post 96.7 0.0041 8.9E-08 64.9 7.3 73 98-191 431-505 (952)
175 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 60.8 3.0 88 430-518 63-158 (260)
176 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.014 3E-07 55.1 10.4 48 97-149 20-67 (237)
177 COG1102 Cmk Cytidylate kinase 96.7 0.0045 9.7E-08 52.7 6.1 46 100-159 2-47 (179)
178 PRK14954 DNA polymerase III su 96.7 0.009 2E-07 63.8 10.0 46 77-122 16-62 (620)
179 cd01121 Sms Sms (bacterial rad 96.7 0.0076 1.6E-07 60.4 8.9 86 97-191 81-169 (372)
180 cd03115 SRP The signal recogni 96.7 0.0076 1.6E-07 53.8 8.2 23 100-122 2-24 (173)
181 PRK04296 thymidine kinase; Pro 96.7 0.0025 5.5E-08 57.8 5.1 85 99-189 3-87 (190)
182 PRK08181 transposase; Validate 96.7 0.005 1.1E-07 58.8 7.2 73 98-191 106-178 (269)
183 KOG2739 Leucine-rich acidic nu 96.7 0.0013 2.8E-08 60.6 3.1 105 384-489 41-154 (260)
184 PRK09183 transposase/IS protei 96.7 0.0045 9.8E-08 59.0 6.9 26 97-122 101-126 (259)
185 PRK10463 hydrogenase nickel in 96.7 0.0076 1.6E-07 57.6 8.3 34 89-122 95-128 (290)
186 PRK06067 flagellar accessory p 96.6 0.014 3E-07 55.0 10.1 87 97-189 24-129 (234)
187 PRK14951 DNA polymerase III su 96.6 0.0093 2E-07 63.5 9.5 46 77-122 16-62 (618)
188 PRK14088 dnaA chromosomal repl 96.6 0.0048 1E-07 63.7 7.2 75 98-191 130-205 (440)
189 TIGR02880 cbbX_cfxQ probable R 96.6 0.016 3.4E-07 56.2 10.3 44 79-122 24-82 (284)
190 PF13238 AAA_18: AAA domain; P 96.6 0.0016 3.6E-08 54.7 3.2 21 101-121 1-21 (129)
191 CHL00176 ftsH cell division pr 96.6 0.007 1.5E-07 65.0 8.5 47 76-122 182-240 (638)
192 PLN03187 meiotic recombination 96.6 0.017 3.7E-07 57.1 10.6 93 97-190 125-231 (344)
193 PRK06921 hypothetical protein; 96.6 0.0093 2E-07 57.1 8.5 38 97-137 116-154 (266)
194 KOG2120 SCF ubiquitin ligase, 96.6 0.00041 8.9E-09 64.8 -0.8 130 384-515 232-375 (419)
195 KOG2123 Uncharacterized conser 96.6 0.00021 4.6E-09 65.9 -2.7 102 408-512 19-126 (388)
196 PRK06526 transposase; Provisio 96.6 0.0048 1E-07 58.5 6.3 26 97-122 97-122 (254)
197 PRK07994 DNA polymerase III su 96.6 0.0095 2.1E-07 63.7 9.1 47 76-122 15-62 (647)
198 PRK08939 primosomal protein Dn 96.6 0.01 2.3E-07 57.9 8.8 90 81-191 135-228 (306)
199 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0046 1E-07 69.0 7.0 46 77-122 566-620 (852)
200 TIGR01243 CDC48 AAA family ATP 96.5 0.0054 1.2E-07 68.0 7.5 44 79-122 180-236 (733)
201 TIGR02881 spore_V_K stage V sp 96.5 0.0036 7.7E-08 60.1 5.3 44 79-122 8-66 (261)
202 PRK10867 signal recognition pa 96.5 0.021 4.6E-07 58.3 11.0 90 97-190 99-193 (433)
203 PRK07667 uridine kinase; Provi 96.5 0.0054 1.2E-07 55.8 6.2 37 86-122 3-41 (193)
204 PRK14952 DNA polymerase III su 96.5 0.014 3E-07 62.0 10.0 46 77-122 13-59 (584)
205 COG0466 Lon ATP-dependent Lon 96.5 0.0031 6.7E-08 66.2 5.0 98 79-191 325-428 (782)
206 PRK08903 DnaA regulatory inact 96.5 0.0058 1.3E-07 57.3 6.6 44 79-122 21-66 (227)
207 COG4608 AppF ABC-type oligopep 96.5 0.014 3E-07 54.7 8.7 93 97-193 38-140 (268)
208 COG1618 Predicted nucleotide k 96.5 0.0035 7.5E-08 53.4 4.3 24 99-122 6-29 (179)
209 KOG1969 DNA replication checkp 96.5 0.006 1.3E-07 64.0 6.8 73 97-192 325-399 (877)
210 PRK13531 regulatory ATPase Rav 96.5 0.0041 8.9E-08 63.5 5.5 44 77-122 20-63 (498)
211 TIGR00390 hslU ATP-dependent p 96.5 0.0065 1.4E-07 60.8 6.8 46 77-122 12-71 (441)
212 PRK11889 flhF flagellar biosyn 96.5 0.029 6.4E-07 55.8 11.2 88 97-189 240-329 (436)
213 PHA00729 NTP-binding motif con 96.5 0.0038 8.3E-08 57.3 4.8 34 89-122 8-41 (226)
214 TIGR03499 FlhF flagellar biosy 96.5 0.015 3.4E-07 56.2 9.3 88 97-189 193-281 (282)
215 cd02019 NK Nucleoside/nucleoti 96.5 0.0025 5.4E-08 47.1 2.9 23 100-122 1-23 (69)
216 PF01695 IstB_IS21: IstB-like 96.5 0.0069 1.5E-07 54.2 6.3 74 97-191 46-119 (178)
217 PRK09270 nucleoside triphospha 96.5 0.0042 9E-08 58.3 5.1 27 96-122 31-57 (229)
218 PLN00020 ribulose bisphosphate 96.5 0.0036 7.7E-08 61.3 4.6 27 96-122 146-172 (413)
219 TIGR02239 recomb_RAD51 DNA rep 96.4 0.022 4.7E-07 56.0 10.3 93 97-190 95-201 (316)
220 PRK14971 DNA polymerase III su 96.4 0.012 2.7E-07 63.1 9.2 46 77-122 17-63 (614)
221 PRK14722 flhF flagellar biosyn 96.4 0.014 3.1E-07 58.1 9.0 88 98-190 137-225 (374)
222 TIGR00678 holB DNA polymerase 96.4 0.015 3.1E-07 52.8 8.3 35 88-122 3-38 (188)
223 COG0468 RecA RecA/RadA recombi 96.4 0.017 3.7E-07 55.0 9.0 92 97-192 59-153 (279)
224 TIGR00959 ffh signal recogniti 96.4 0.018 4E-07 58.7 9.7 91 98-190 99-192 (428)
225 COG4088 Predicted nucleotide k 96.4 0.0031 6.6E-08 55.9 3.6 24 99-122 2-25 (261)
226 KOG1909 Ran GTPase-activating 96.4 0.00082 1.8E-08 64.2 0.1 128 385-514 156-309 (382)
227 PRK08233 hypothetical protein; 96.4 0.0029 6.2E-08 57.0 3.6 25 98-122 3-27 (182)
228 TIGR00602 rad24 checkpoint pro 96.4 0.004 8.7E-08 66.4 5.0 46 77-122 84-134 (637)
229 PRK04328 hypothetical protein; 96.4 0.02 4.4E-07 54.3 9.4 42 97-141 22-63 (249)
230 TIGR00362 DnaA chromosomal rep 96.4 0.021 4.5E-07 58.6 10.2 75 98-191 136-210 (405)
231 TIGR00064 ftsY signal recognit 96.4 0.022 4.8E-07 54.7 9.6 89 97-189 71-163 (272)
232 PF00154 RecA: recA bacterial 96.4 0.02 4.2E-07 55.8 9.2 88 97-192 52-143 (322)
233 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.035 7.6E-07 52.1 10.8 41 97-140 19-59 (229)
234 PRK14959 DNA polymerase III su 96.3 0.017 3.7E-07 61.3 9.2 46 77-122 16-62 (624)
235 PRK14974 cell division protein 96.3 0.033 7.1E-07 55.0 10.7 57 97-157 139-197 (336)
236 TIGR02639 ClpA ATP-dependent C 96.3 0.011 2.3E-07 65.5 8.1 46 77-122 454-508 (731)
237 PRK06762 hypothetical protein; 96.3 0.0034 7.5E-08 55.6 3.6 25 98-122 2-26 (166)
238 KOG1909 Ran GTPase-activating 96.3 0.0035 7.5E-08 60.1 3.7 127 386-513 92-251 (382)
239 PTZ00035 Rad51 protein; Provis 96.3 0.041 8.9E-07 54.6 11.4 94 97-191 117-224 (337)
240 PRK05480 uridine/cytidine kina 96.3 0.0037 8E-08 57.8 3.8 27 96-122 4-30 (209)
241 PF01583 APS_kinase: Adenylyls 96.3 0.0053 1.1E-07 53.0 4.5 35 99-136 3-37 (156)
242 PRK04301 radA DNA repair and r 96.3 0.041 9E-07 54.4 11.4 94 97-191 101-209 (317)
243 TIGR00235 udk uridine kinase. 96.3 0.0035 7.6E-08 57.8 3.6 26 97-122 5-30 (207)
244 cd02025 PanK Pantothenate kina 96.3 0.02 4.4E-07 53.1 8.6 23 100-122 1-23 (220)
245 TIGR00554 panK_bact pantothena 96.3 0.029 6.3E-07 54.1 9.8 27 96-122 60-86 (290)
246 PTZ00301 uridine kinase; Provi 96.3 0.0039 8.4E-08 57.3 3.6 25 98-122 3-27 (210)
247 PF14516 AAA_35: AAA-like doma 96.3 0.15 3.3E-06 50.7 15.2 113 76-192 10-139 (331)
248 PF13671 AAA_33: AAA domain; P 96.3 0.0038 8.3E-08 53.7 3.4 23 100-122 1-23 (143)
249 KOG0738 AAA+-type ATPase [Post 96.2 0.087 1.9E-06 51.6 12.6 44 79-122 214-269 (491)
250 CHL00095 clpC Clp protease ATP 96.2 0.015 3.1E-07 65.3 8.7 61 76-139 508-577 (821)
251 PRK00889 adenylylsulfate kinas 96.2 0.018 3.9E-07 51.5 7.7 26 97-122 3-28 (175)
252 TIGR02236 recomb_radA DNA repa 96.2 0.05 1.1E-06 53.6 11.5 59 97-156 94-155 (310)
253 TIGR03346 chaperone_ClpB ATP-d 96.2 0.019 4.1E-07 64.6 9.5 60 77-139 565-633 (852)
254 KOG0744 AAA+-type ATPase [Post 96.2 0.019 4E-07 54.7 7.7 82 98-191 177-261 (423)
255 PRK00149 dnaA chromosomal repl 96.2 0.015 3.3E-07 60.5 8.1 75 98-191 148-222 (450)
256 PRK05201 hslU ATP-dependent pr 96.2 0.012 2.6E-07 59.0 6.8 76 77-152 15-105 (443)
257 COG1066 Sms Predicted ATP-depe 96.2 0.048 1E-06 53.9 10.7 94 87-191 80-179 (456)
258 KOG2004 Mitochondrial ATP-depe 96.2 0.01 2.2E-07 62.3 6.4 62 79-146 413-480 (906)
259 PRK12422 chromosomal replicati 96.2 0.013 2.9E-07 60.3 7.5 72 99-191 142-213 (445)
260 PRK10865 protein disaggregatio 96.2 0.024 5.1E-07 63.6 10.0 46 77-122 568-622 (857)
261 PRK03839 putative kinase; Prov 96.2 0.0041 8.9E-08 56.0 3.3 23 100-122 2-24 (180)
262 KOG0734 AAA+-type ATPase conta 96.2 0.014 3E-07 59.1 7.1 47 76-122 303-361 (752)
263 cd01124 KaiC KaiC is a circadi 96.2 0.021 4.7E-07 51.5 8.0 45 100-149 1-45 (187)
264 PRK06217 hypothetical protein; 96.2 0.0081 1.8E-07 54.2 5.1 23 100-122 3-25 (183)
265 PRK11823 DNA repair protein Ra 96.2 0.021 4.5E-07 59.1 8.7 95 88-191 68-167 (446)
266 TIGR00763 lon ATP-dependent pr 96.2 0.012 2.6E-07 65.4 7.5 45 78-122 321-371 (775)
267 COG0563 Adk Adenylate kinase a 96.1 0.0086 1.9E-07 53.4 5.0 23 100-122 2-24 (178)
268 PRK14087 dnaA chromosomal repl 96.1 0.015 3.3E-07 60.1 7.5 76 99-191 142-217 (450)
269 COG1222 RPT1 ATP-dependent 26S 96.1 0.0093 2E-07 57.6 5.4 44 79-122 153-209 (406)
270 PRK12726 flagellar biosynthesi 96.1 0.069 1.5E-06 53.0 11.6 89 97-190 205-295 (407)
271 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.036 7.9E-07 52.9 9.6 42 97-141 35-76 (259)
272 PRK12727 flagellar biosynthesi 96.1 0.041 8.9E-07 57.0 10.4 89 97-190 349-438 (559)
273 cd02027 APSK Adenosine 5'-phos 96.1 0.022 4.9E-07 49.3 7.5 23 100-122 1-23 (149)
274 PRK06835 DNA replication prote 96.1 0.018 3.9E-07 56.8 7.6 38 98-138 183-220 (329)
275 PF00560 LRR_1: Leucine Rich R 96.1 0.0024 5.3E-08 35.1 0.8 17 457-473 2-18 (22)
276 PLN03186 DNA repair protein RA 96.0 0.048 1E-06 54.0 10.3 93 97-190 122-228 (342)
277 TIGR01360 aden_kin_iso1 adenyl 96.0 0.0056 1.2E-07 55.4 3.6 26 97-122 2-27 (188)
278 PRK14953 DNA polymerase III su 96.0 0.046 9.9E-07 57.1 10.5 46 77-122 16-62 (486)
279 PF06309 Torsin: Torsin; Inte 96.0 0.013 2.8E-07 48.2 5.2 44 79-122 27-77 (127)
280 TIGR00150 HI0065_YjeE ATPase, 96.0 0.012 2.7E-07 49.3 5.2 39 84-122 6-46 (133)
281 CHL00195 ycf46 Ycf46; Provisio 96.0 0.022 4.8E-07 59.2 8.2 46 77-122 228-283 (489)
282 PF08433 KTI12: Chromatin asso 96.0 0.014 3.1E-07 55.8 6.2 24 99-122 2-25 (270)
283 PRK05439 pantothenate kinase; 96.0 0.056 1.2E-06 52.6 10.3 81 96-181 84-166 (311)
284 PRK12678 transcription termina 96.0 0.017 3.7E-07 59.9 7.0 95 96-192 414-515 (672)
285 cd02028 UMPK_like Uridine mono 96.0 0.015 3.2E-07 52.2 6.0 23 100-122 1-23 (179)
286 PRK00625 shikimate kinase; Pro 96.0 0.0055 1.2E-07 54.5 3.1 23 100-122 2-24 (173)
287 PRK04040 adenylate kinase; Pro 96.0 0.0064 1.4E-07 54.9 3.5 25 98-122 2-26 (188)
288 PRK12723 flagellar biosynthesi 96.0 0.081 1.8E-06 53.3 11.6 90 97-190 173-264 (388)
289 KOG0743 AAA+-type ATPase [Post 96.0 0.22 4.7E-06 50.1 14.2 23 100-122 237-259 (457)
290 PF06745 KaiC: KaiC; InterPro 96.0 0.011 2.4E-07 55.3 5.3 87 97-189 18-124 (226)
291 PRK09519 recA DNA recombinatio 95.9 0.024 5.3E-07 61.6 8.2 87 97-191 59-149 (790)
292 TIGR03575 selen_PSTK_euk L-ser 95.9 0.028 6.1E-07 55.4 8.0 22 101-122 2-23 (340)
293 PF13481 AAA_25: AAA domain; P 95.9 0.031 6.7E-07 50.8 7.9 42 99-141 33-82 (193)
294 PRK08972 fliI flagellum-specif 95.9 0.022 4.7E-07 57.7 7.3 92 96-192 160-264 (444)
295 PRK09087 hypothetical protein; 95.9 0.015 3.2E-07 54.3 5.8 26 97-122 43-68 (226)
296 TIGR00416 sms DNA repair prote 95.9 0.029 6.2E-07 58.1 8.4 97 86-191 80-181 (454)
297 PRK11034 clpA ATP-dependent Cl 95.9 0.032 6.9E-07 61.3 9.2 46 77-122 458-512 (758)
298 PRK06002 fliI flagellum-specif 95.9 0.034 7.3E-07 56.7 8.7 92 97-192 164-266 (450)
299 PF13177 DNA_pol3_delta2: DNA 95.9 0.034 7.4E-07 48.9 7.8 42 81-122 1-43 (162)
300 TIGR01425 SRP54_euk signal rec 95.9 0.036 7.8E-07 56.3 8.8 58 97-157 99-157 (429)
301 PRK10416 signal recognition pa 95.9 0.095 2.1E-06 51.5 11.6 26 97-122 113-138 (318)
302 TIGR03574 selen_PSTK L-seryl-t 95.9 0.012 2.7E-07 55.9 5.3 23 100-122 1-23 (249)
303 PRK12724 flagellar biosynthesi 95.9 0.038 8.2E-07 55.7 8.8 25 98-122 223-247 (432)
304 KOG1514 Origin recognition com 95.9 0.043 9.2E-07 57.7 9.3 107 79-191 398-519 (767)
305 PF00560 LRR_1: Leucine Rich R 95.9 0.0029 6.2E-08 34.8 0.5 22 433-454 1-22 (22)
306 PRK14948 DNA polymerase III su 95.9 0.058 1.3E-06 58.1 10.7 46 77-122 16-62 (620)
307 PRK08533 flagellar accessory p 95.9 0.059 1.3E-06 50.5 9.6 53 97-155 23-75 (230)
308 COG0003 ArsA Predicted ATPase 95.9 0.014 3.1E-07 57.0 5.6 49 98-149 2-50 (322)
309 cd02024 NRK1 Nicotinamide ribo 95.9 0.0061 1.3E-07 54.8 2.8 23 100-122 1-23 (187)
310 COG0470 HolB ATPase involved i 95.9 0.045 9.7E-07 54.3 9.4 44 79-122 3-48 (325)
311 PF00910 RNA_helicase: RNA hel 95.9 0.0061 1.3E-07 49.5 2.6 22 101-122 1-22 (107)
312 COG0542 clpA ATP-binding subun 95.8 0.022 4.8E-07 61.5 7.3 103 77-192 491-605 (786)
313 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.0062 1.3E-07 54.9 2.9 23 100-122 1-23 (183)
314 KOG0729 26S proteasome regulat 95.8 0.042 9.1E-07 50.7 8.0 45 78-122 178-235 (435)
315 TIGR02030 BchI-ChlI magnesium 95.8 0.014 3.1E-07 57.6 5.6 46 77-122 4-49 (337)
316 PRK05973 replicative DNA helic 95.8 0.058 1.3E-06 50.3 9.2 49 97-150 63-111 (237)
317 cd02023 UMPK Uridine monophosp 95.8 0.0062 1.3E-07 55.7 2.8 23 100-122 1-23 (198)
318 PTZ00088 adenylate kinase 1; P 95.8 0.0091 2E-07 55.7 3.9 22 101-122 9-30 (229)
319 COG1428 Deoxynucleoside kinase 95.8 0.0082 1.8E-07 53.8 3.4 25 98-122 4-28 (216)
320 PRK00131 aroK shikimate kinase 95.8 0.0081 1.8E-07 53.6 3.5 25 98-122 4-28 (175)
321 PRK13765 ATP-dependent proteas 95.8 0.017 3.7E-07 61.9 6.4 74 77-155 31-104 (637)
322 PRK06647 DNA polymerase III su 95.8 0.051 1.1E-06 57.7 9.8 46 77-122 16-62 (563)
323 COG3640 CooC CO dehydrogenase 95.8 0.016 3.5E-07 52.7 5.1 43 100-144 2-44 (255)
324 cd01135 V_A-ATPase_B V/A-type 95.8 0.048 1.1E-06 51.7 8.6 96 97-192 68-178 (276)
325 PRK08451 DNA polymerase III su 95.8 0.073 1.6E-06 55.8 10.6 46 77-122 14-60 (535)
326 TIGR02902 spore_lonB ATP-depen 95.7 0.017 3.7E-07 61.1 6.1 46 77-122 65-110 (531)
327 PRK10787 DNA-binding ATP-depen 95.7 0.026 5.7E-07 62.4 7.7 46 77-122 322-373 (784)
328 cd01131 PilT Pilus retraction 95.7 0.01 2.2E-07 54.2 3.9 88 99-196 2-90 (198)
329 PRK07399 DNA polymerase III su 95.7 0.049 1.1E-06 53.5 8.8 46 77-122 4-50 (314)
330 PF07726 AAA_3: ATPase family 95.7 0.0058 1.3E-07 50.4 1.9 27 101-130 2-28 (131)
331 PRK14965 DNA polymerase III su 95.7 0.053 1.2E-06 58.0 9.8 46 77-122 16-62 (576)
332 TIGR01243 CDC48 AAA family ATP 95.7 0.032 7E-07 61.9 8.4 45 78-122 454-511 (733)
333 KOG0727 26S proteasome regulat 95.7 0.025 5.4E-07 51.8 6.0 44 79-122 157-213 (408)
334 PRK05563 DNA polymerase III su 95.7 0.079 1.7E-06 56.5 10.8 47 76-122 15-62 (559)
335 COG1373 Predicted ATPase (AAA+ 95.7 0.032 7E-07 56.8 7.7 107 81-214 21-127 (398)
336 cd00227 CPT Chloramphenicol (C 95.7 0.0099 2.1E-07 53.2 3.5 24 99-122 3-26 (175)
337 TIGR02322 phosphon_PhnN phosph 95.7 0.0091 2E-07 53.6 3.3 24 99-122 2-25 (179)
338 cd02020 CMPK Cytidine monophos 95.6 0.0088 1.9E-07 51.6 2.9 23 100-122 1-23 (147)
339 PF07724 AAA_2: AAA domain (Cd 95.6 0.0089 1.9E-07 53.0 2.9 42 98-142 3-45 (171)
340 PRK12597 F0F1 ATP synthase sub 95.6 0.033 7.1E-07 57.1 7.3 94 97-192 142-249 (461)
341 COG1124 DppF ABC-type dipeptid 95.6 0.015 3.3E-07 53.3 4.4 26 97-122 32-57 (252)
342 PF02374 ArsA_ATPase: Anion-tr 95.6 0.015 3.3E-07 56.8 4.8 47 99-148 2-48 (305)
343 PF00006 ATP-synt_ab: ATP synt 95.6 0.04 8.7E-07 50.7 7.3 91 97-192 14-117 (215)
344 TIGR02655 circ_KaiC circadian 95.6 0.08 1.7E-06 55.6 10.5 97 87-189 250-362 (484)
345 cd02021 GntK Gluconate kinase 95.6 0.0089 1.9E-07 51.9 2.8 23 100-122 1-23 (150)
346 TIGR03305 alt_F1F0_F1_bet alte 95.6 0.047 1E-06 55.6 8.4 94 97-192 137-244 (449)
347 PRK13947 shikimate kinase; Pro 95.6 0.0099 2.2E-07 52.9 3.2 23 100-122 3-25 (171)
348 PRK03846 adenylylsulfate kinas 95.6 0.018 3.8E-07 52.7 4.9 27 96-122 22-48 (198)
349 KOG3347 Predicted nucleotide k 95.6 0.019 4E-07 48.3 4.4 40 99-146 8-47 (176)
350 PRK09280 F0F1 ATP synthase sub 95.6 0.057 1.2E-06 55.2 8.9 94 97-192 143-250 (463)
351 TIGR03498 FliI_clade3 flagella 95.6 0.032 7E-07 56.6 7.1 91 97-192 139-242 (418)
352 cd00544 CobU Adenosylcobinamid 95.6 0.072 1.6E-06 47.1 8.4 80 100-189 1-82 (169)
353 PF12775 AAA_7: P-loop contain 95.6 0.029 6.4E-07 53.8 6.4 89 87-191 23-111 (272)
354 PF00625 Guanylate_kin: Guanyl 95.6 0.017 3.8E-07 52.0 4.6 36 98-136 2-37 (183)
355 cd02029 PRK_like Phosphoribulo 95.6 0.036 7.9E-07 52.2 6.7 79 100-181 1-85 (277)
356 cd01129 PulE-GspE PulE/GspE Th 95.5 0.027 5.9E-07 53.8 6.1 102 81-196 63-165 (264)
357 TIGR00764 lon_rel lon-related 95.5 0.048 1E-06 58.6 8.5 74 77-155 18-91 (608)
358 KOG0741 AAA+-type ATPase [Post 95.5 0.03 6.5E-07 56.8 6.4 80 97-202 537-620 (744)
359 KOG2170 ATPase of the AAA+ sup 95.5 0.064 1.4E-06 50.7 8.1 99 79-192 84-190 (344)
360 PRK08149 ATP synthase SpaL; Va 95.5 0.068 1.5E-06 54.3 9.0 91 97-192 150-253 (428)
361 PRK05703 flhF flagellar biosyn 95.5 0.068 1.5E-06 54.8 9.2 87 98-189 221-308 (424)
362 PRK15453 phosphoribulokinase; 95.4 0.085 1.8E-06 50.2 8.8 26 97-122 4-29 (290)
363 COG0467 RAD55 RecA-superfamily 95.4 0.035 7.6E-07 53.2 6.5 53 97-155 22-74 (260)
364 cd01136 ATPase_flagellum-secre 95.4 0.092 2E-06 51.5 9.4 92 96-192 67-171 (326)
365 PRK13949 shikimate kinase; Pro 95.4 0.012 2.6E-07 52.2 3.1 24 99-122 2-25 (169)
366 PRK06620 hypothetical protein; 95.4 0.031 6.7E-07 51.6 5.9 24 99-122 45-68 (214)
367 CHL00081 chlI Mg-protoporyphyr 95.4 0.023 4.9E-07 56.3 5.1 46 77-122 17-62 (350)
368 PRK08927 fliI flagellum-specif 95.4 0.073 1.6E-06 54.2 8.8 91 97-192 157-260 (442)
369 TIGR03263 guanyl_kin guanylate 95.4 0.013 2.7E-07 52.7 3.1 24 99-122 2-25 (180)
370 PRK05922 type III secretion sy 95.4 0.048 1E-06 55.4 7.5 92 96-192 155-259 (434)
371 TIGR02640 gas_vesic_GvpN gas v 95.4 0.053 1.2E-06 51.9 7.5 55 84-146 9-63 (262)
372 COG1223 Predicted ATPase (AAA+ 95.4 0.095 2.1E-06 48.5 8.5 46 77-122 121-175 (368)
373 PRK12339 2-phosphoglycerate ki 95.4 0.015 3.3E-07 52.8 3.6 25 98-122 3-27 (197)
374 PF02562 PhoH: PhoH-like prote 95.4 0.026 5.6E-07 51.3 5.0 52 82-136 5-56 (205)
375 PF03308 ArgK: ArgK protein; 95.4 0.035 7.7E-07 51.7 5.9 60 86-146 15-76 (266)
376 PF03205 MobB: Molybdopterin g 95.4 0.029 6.2E-07 48.0 5.0 39 99-139 1-39 (140)
377 cd00464 SK Shikimate kinase (S 95.4 0.013 2.9E-07 51.0 3.1 22 101-122 2-23 (154)
378 PRK14721 flhF flagellar biosyn 95.4 0.12 2.5E-06 52.6 10.1 61 97-158 190-251 (420)
379 cd00071 GMPK Guanosine monopho 95.4 0.014 3.1E-07 49.7 3.1 23 100-122 1-23 (137)
380 COG1936 Predicted nucleotide k 95.4 0.014 2.9E-07 50.6 2.9 20 100-119 2-21 (180)
381 PRK05800 cobU adenosylcobinami 95.3 0.056 1.2E-06 47.9 7.0 48 99-153 2-49 (170)
382 PF00158 Sigma54_activat: Sigm 95.3 0.023 5E-07 50.2 4.5 69 79-151 1-71 (168)
383 TIGR00073 hypB hydrogenase acc 95.3 0.019 4.2E-07 52.9 4.2 32 91-122 15-46 (207)
384 COG2607 Predicted ATPase (AAA+ 95.3 0.085 1.8E-06 48.3 8.0 46 77-122 60-109 (287)
385 PRK09112 DNA polymerase III su 95.3 0.028 6E-07 56.1 5.6 46 77-122 23-69 (351)
386 PRK00300 gmk guanylate kinase; 95.3 0.016 3.4E-07 53.4 3.6 26 97-122 4-29 (205)
387 KOG0730 AAA+-type ATPase [Post 95.3 0.046 9.9E-07 57.1 7.1 91 79-192 436-539 (693)
388 PRK10751 molybdopterin-guanine 95.3 0.016 3.6E-07 51.1 3.5 26 97-122 5-30 (173)
389 PRK14530 adenylate kinase; Pro 95.3 0.014 3.1E-07 54.1 3.3 24 99-122 4-27 (215)
390 KOG0733 Nuclear AAA ATPase (VC 95.3 0.064 1.4E-06 55.5 8.0 72 98-192 545-616 (802)
391 KOG2123 Uncharacterized conser 95.3 0.00085 1.8E-08 62.1 -4.8 68 375-442 30-98 (388)
392 PF10443 RNA12: RNA12 protein; 95.3 0.095 2.1E-06 52.5 9.0 68 82-156 1-72 (431)
393 TIGR01040 V-ATPase_V1_B V-type 95.3 0.08 1.7E-06 53.9 8.6 96 97-192 140-259 (466)
394 PRK13407 bchI magnesium chelat 95.3 0.027 5.8E-07 55.6 5.2 46 77-122 8-53 (334)
395 COG1703 ArgK Putative periplas 95.3 0.034 7.4E-07 52.6 5.5 59 88-147 39-99 (323)
396 PRK13948 shikimate kinase; Pro 95.3 0.018 3.9E-07 51.6 3.6 26 97-122 9-34 (182)
397 PTZ00185 ATPase alpha subunit; 95.2 0.083 1.8E-06 54.3 8.5 95 97-192 188-301 (574)
398 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.073 1.6E-06 45.8 7.2 26 97-122 25-50 (144)
399 cd01122 GP4d_helicase GP4d_hel 95.2 0.11 2.3E-06 50.2 9.1 52 97-152 29-80 (271)
400 TIGR01313 therm_gnt_kin carboh 95.2 0.013 2.8E-07 51.7 2.5 22 101-122 1-22 (163)
401 PRK14086 dnaA chromosomal repl 95.2 0.061 1.3E-06 56.9 7.8 75 99-192 315-389 (617)
402 PRK14527 adenylate kinase; Pro 95.2 0.019 4E-07 52.2 3.6 26 97-122 5-30 (191)
403 PRK13975 thymidylate kinase; P 95.2 0.018 3.8E-07 52.6 3.4 24 99-122 3-26 (196)
404 PF13245 AAA_19: Part of AAA d 95.2 0.065 1.4E-06 40.2 5.9 25 97-121 9-33 (76)
405 PRK07471 DNA polymerase III su 95.2 0.033 7.2E-07 55.9 5.6 46 77-122 19-65 (365)
406 COG0714 MoxR-like ATPases [Gen 95.2 0.05 1.1E-06 54.1 6.9 63 78-148 25-87 (329)
407 PRK06995 flhF flagellar biosyn 95.2 0.1 2.2E-06 53.9 9.2 58 98-157 256-315 (484)
408 PRK10078 ribose 1,5-bisphospho 95.2 0.016 3.5E-07 52.3 3.1 24 99-122 3-26 (186)
409 PF13306 LRR_5: Leucine rich r 95.2 0.086 1.9E-06 44.1 7.5 57 405-463 32-89 (129)
410 COG1419 FlhF Flagellar GTP-bin 95.2 0.25 5.5E-06 49.2 11.5 88 97-189 202-290 (407)
411 PRK06936 type III secretion sy 95.1 0.066 1.4E-06 54.5 7.6 92 96-192 160-264 (439)
412 KOG0736 Peroxisome assembly fa 95.1 0.11 2.3E-06 55.4 9.2 91 79-192 674-776 (953)
413 PRK05057 aroK shikimate kinase 95.1 0.02 4.3E-07 51.0 3.5 24 99-122 5-28 (172)
414 COG0542 clpA ATP-binding subun 95.1 0.024 5.1E-07 61.3 4.6 44 79-122 172-215 (786)
415 TIGR01039 atpD ATP synthase, F 95.1 0.11 2.4E-06 53.1 9.0 94 97-192 142-249 (461)
416 cd01672 TMPK Thymidine monopho 95.1 0.048 1E-06 49.7 6.1 23 100-122 2-24 (200)
417 PRK13946 shikimate kinase; Pro 95.1 0.019 4.2E-07 51.7 3.4 25 98-122 10-34 (184)
418 COG0529 CysC Adenylylsulfate k 95.1 0.036 7.8E-07 48.2 4.7 30 93-122 18-47 (197)
419 COG3598 RepA RecA-family ATPas 95.1 0.13 2.9E-06 49.0 8.8 61 100-160 91-159 (402)
420 cd03222 ABC_RNaseL_inhibitor T 95.1 0.096 2.1E-06 46.7 7.7 27 96-122 23-49 (177)
421 PF03193 DUF258: Protein of un 95.1 0.036 7.8E-07 48.2 4.7 35 85-122 25-59 (161)
422 PRK09099 type III secretion sy 95.0 0.1 2.2E-06 53.4 8.6 93 96-192 161-265 (441)
423 cd03238 ABC_UvrA The excision 95.0 0.12 2.6E-06 46.0 8.2 24 97-120 20-43 (176)
424 PF14532 Sigma54_activ_2: Sigm 95.0 0.024 5.3E-07 48.4 3.6 43 80-122 1-45 (138)
425 PRK06305 DNA polymerase III su 95.0 0.036 7.7E-07 57.4 5.5 46 77-122 17-63 (451)
426 cd00820 PEPCK_HprK Phosphoenol 95.0 0.022 4.8E-07 45.7 3.0 23 97-119 14-36 (107)
427 PRK14737 gmk guanylate kinase; 95.0 0.023 5.1E-07 51.2 3.6 26 97-122 3-28 (186)
428 PRK04182 cytidylate kinase; Pr 95.0 0.021 4.6E-07 51.2 3.3 23 100-122 2-24 (180)
429 PRK08058 DNA polymerase III su 94.9 0.1 2.3E-06 51.7 8.4 44 79-122 7-52 (329)
430 PF13086 AAA_11: AAA domain; P 94.9 0.065 1.4E-06 50.2 6.7 66 85-152 6-75 (236)
431 PRK13768 GTPase; Provisional 94.9 0.036 7.9E-07 52.7 4.9 24 99-122 3-26 (253)
432 PF01078 Mg_chelatase: Magnesi 94.9 0.047 1E-06 49.4 5.3 44 77-122 3-46 (206)
433 PLN02200 adenylate kinase fami 94.9 0.025 5.4E-07 53.1 3.7 26 97-122 42-67 (234)
434 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.043 9.3E-07 53.6 5.3 45 78-122 62-112 (358)
435 PLN02924 thymidylate kinase 94.9 0.13 2.8E-06 47.7 8.4 25 98-122 16-40 (220)
436 cd03214 ABC_Iron-Siderophores_ 94.9 0.2 4.4E-06 44.9 9.5 91 97-192 24-127 (180)
437 COG0237 CoaE Dephospho-CoA kin 94.9 0.025 5.3E-07 51.4 3.5 23 98-120 2-24 (201)
438 PRK05342 clpX ATP-dependent pr 94.9 0.037 8E-07 56.4 5.1 46 77-122 71-132 (412)
439 PRK06761 hypothetical protein; 94.9 0.048 1E-06 52.3 5.5 24 99-122 4-27 (282)
440 TIGR00041 DTMP_kinase thymidyl 94.9 0.064 1.4E-06 48.8 6.3 24 99-122 4-27 (195)
441 PRK14723 flhF flagellar biosyn 94.8 0.21 4.6E-06 54.4 10.8 58 98-157 185-244 (767)
442 PF00142 Fer4_NifH: 4Fe-4S iro 94.8 0.045 9.7E-07 51.1 5.0 43 99-144 1-43 (273)
443 TIGR02173 cyt_kin_arch cytidyl 94.8 0.025 5.5E-07 50.2 3.3 23 100-122 2-24 (171)
444 COG0464 SpoVK ATPases of the A 94.8 0.079 1.7E-06 56.0 7.4 92 78-192 243-347 (494)
445 KOG3354 Gluconate kinase [Carb 94.8 0.15 3.2E-06 43.3 7.3 24 99-122 13-36 (191)
446 cd01132 F1_ATPase_alpha F1 ATP 94.8 0.081 1.7E-06 50.2 6.6 91 97-192 68-173 (274)
447 COG1126 GlnQ ABC-type polar am 94.8 0.037 8.1E-07 49.8 4.1 36 97-136 27-62 (240)
448 PRK09825 idnK D-gluconate kina 94.8 0.026 5.7E-07 50.4 3.2 24 99-122 4-27 (176)
449 COG2019 AdkA Archaeal adenylat 94.8 0.029 6.3E-07 48.2 3.3 24 98-121 4-27 (189)
450 PF13521 AAA_28: AAA domain; P 94.7 0.023 4.9E-07 50.1 2.8 21 101-121 2-22 (163)
451 PRK14738 gmk guanylate kinase; 94.7 0.03 6.4E-07 51.5 3.6 25 97-121 12-36 (206)
452 PRK07196 fliI flagellum-specif 94.7 0.14 2.9E-06 52.3 8.6 92 96-192 153-257 (434)
453 PTZ00494 tuzin-like protein; P 94.7 0.45 9.7E-06 47.9 11.7 76 76-160 370-448 (664)
454 PHA02244 ATPase-like protein 94.7 0.063 1.4E-06 53.1 5.9 43 78-122 97-143 (383)
455 COG0194 Gmk Guanylate kinase [ 94.7 0.03 6.6E-07 49.2 3.3 24 98-121 4-27 (191)
456 PLN02348 phosphoribulokinase 94.7 0.18 3.9E-06 50.4 9.0 27 96-122 47-73 (395)
457 TIGR02858 spore_III_AA stage I 94.7 0.097 2.1E-06 50.1 7.0 28 95-122 108-135 (270)
458 COG0703 AroK Shikimate kinase 94.7 0.031 6.8E-07 48.8 3.3 24 99-122 3-26 (172)
459 PRK05688 fliI flagellum-specif 94.7 0.1 2.3E-06 53.2 7.6 92 96-192 166-270 (451)
460 PRK07721 fliI flagellum-specif 94.6 0.16 3.6E-06 52.0 9.0 93 96-192 156-260 (438)
461 cd03223 ABCD_peroxisomal_ALDP 94.6 0.16 3.6E-06 44.8 8.0 26 97-122 26-51 (166)
462 PRK03731 aroL shikimate kinase 94.6 0.028 6E-07 50.0 3.1 24 99-122 3-26 (171)
463 PLN02796 D-glycerate 3-kinase 94.6 0.093 2E-06 51.5 6.8 26 97-122 99-124 (347)
464 PRK14532 adenylate kinase; Pro 94.6 0.027 5.9E-07 51.0 3.0 22 101-122 3-24 (188)
465 KOG1051 Chaperone HSP104 and r 94.6 0.16 3.6E-06 55.9 9.3 101 78-192 563-672 (898)
466 cd01428 ADK Adenylate kinase ( 94.6 0.027 5.9E-07 51.2 3.0 22 101-122 2-23 (194)
467 KOG2228 Origin recognition com 94.6 0.18 3.9E-06 48.6 8.4 110 78-190 25-147 (408)
468 TIGR01287 nifH nitrogenase iro 94.6 0.046 1E-06 52.9 4.7 41 99-142 1-41 (275)
469 KOG0739 AAA+-type ATPase [Post 94.6 0.17 3.6E-06 47.8 8.0 89 79-191 135-236 (439)
470 PF03266 NTPase_1: NTPase; In 94.6 0.03 6.5E-07 49.5 3.1 22 101-122 2-23 (168)
471 TIGR01041 ATP_syn_B_arch ATP s 94.6 0.16 3.4E-06 52.2 8.7 95 97-192 140-250 (458)
472 TIGR03496 FliI_clade1 flagella 94.5 0.15 3.3E-06 51.8 8.4 91 97-192 136-239 (411)
473 TIGR00382 clpX endopeptidase C 94.5 0.066 1.4E-06 54.3 5.8 47 76-122 76-140 (413)
474 PRK00698 tmk thymidylate kinas 94.5 0.18 3.9E-06 46.2 8.5 24 99-122 4-27 (205)
475 TIGR00176 mobB molybdopterin-g 94.5 0.029 6.2E-07 48.9 2.9 23 100-122 1-23 (155)
476 PLN03046 D-glycerate 3-kinase; 94.5 0.2 4.3E-06 50.4 8.9 26 97-122 211-236 (460)
477 PRK09302 circadian clock prote 94.5 0.24 5.1E-06 52.6 10.3 87 97-189 272-372 (509)
478 cd02040 NifH NifH gene encodes 94.5 0.059 1.3E-06 52.0 5.3 43 99-144 2-44 (270)
479 PF08477 Miro: Miro-like prote 94.5 0.033 7.1E-07 46.0 3.1 22 101-122 2-23 (119)
480 PF03029 ATP_bind_1: Conserved 94.5 0.045 9.7E-07 51.5 4.3 32 103-137 1-32 (238)
481 PRK14493 putative bifunctional 94.5 0.055 1.2E-06 51.9 4.9 36 99-138 2-37 (274)
482 PRK06793 fliI flagellum-specif 94.5 0.17 3.8E-06 51.5 8.7 93 96-192 154-258 (432)
483 PRK10733 hflB ATP-dependent me 94.5 0.1 2.2E-06 56.8 7.5 44 79-122 154-209 (644)
484 cd03114 ArgK-like The function 94.5 0.053 1.2E-06 46.8 4.4 23 100-122 1-23 (148)
485 COG1116 TauB ABC-type nitrate/ 94.5 0.032 7E-07 51.5 3.1 26 97-122 28-53 (248)
486 PRK13695 putative NTPase; Prov 94.5 0.049 1.1E-06 48.6 4.3 23 100-122 2-24 (174)
487 PRK07133 DNA polymerase III su 94.5 0.045 9.8E-07 59.1 4.7 46 77-122 18-64 (725)
488 PRK07594 type III secretion sy 94.5 0.14 3.1E-06 52.1 8.0 92 96-192 153-257 (433)
489 cd02022 DPCK Dephospho-coenzym 94.4 0.029 6.3E-07 50.3 2.8 21 100-120 1-21 (179)
490 COG1224 TIP49 DNA helicase TIP 94.4 0.19 4E-06 48.8 8.1 78 75-156 37-124 (450)
491 PF13306 LRR_5: Leucine rich r 94.4 0.14 3E-06 42.9 6.8 103 404-512 8-112 (129)
492 PRK08154 anaerobic benzoate ca 94.4 0.06 1.3E-06 52.9 5.1 26 97-122 132-157 (309)
493 PRK01184 hypothetical protein; 94.4 0.035 7.6E-07 50.0 3.2 22 99-121 2-23 (184)
494 PRK12338 hypothetical protein; 94.4 0.038 8.3E-07 53.7 3.6 25 98-122 4-28 (319)
495 COG1763 MobB Molybdopterin-gua 94.4 0.056 1.2E-06 47.0 4.3 36 98-136 2-37 (161)
496 PF03215 Rad17: Rad17 cell cyc 94.4 0.072 1.6E-06 55.8 5.8 53 79-136 21-78 (519)
497 PRK05537 bifunctional sulfate 94.3 0.07 1.5E-06 56.8 5.8 46 77-122 369-416 (568)
498 PRK08472 fliI flagellum-specif 94.3 0.25 5.4E-06 50.4 9.5 41 96-141 155-195 (434)
499 cd01983 Fer4_NifH The Fer4_Nif 94.3 0.05 1.1E-06 42.8 3.7 23 100-122 1-23 (99)
500 PF06414 Zeta_toxin: Zeta toxi 94.3 0.07 1.5E-06 48.8 5.0 92 96-192 13-104 (199)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-77 Score=645.87 Aligned_cols=535 Identities=44% Similarity=0.786 Sum_probs=471.9
Q ss_pred hhHHHHHHHHHHhchHh----------------hhcccccCccCCCcchhchHHHHHHHHHHHHHHHHhcCCcccccc-c
Q 048813 2 ETVKAEADQLIRVGSQE----------------IERLCLWGYCSKNCKSSYDFGKKVTKKLQLVETLMGEGIFEVVAE-K 64 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 64 (552)
++++|+++|+++.+..+ .++-|+.+.+.+....-+.+++++-...++++....++.+..+.. .
T Consensus 65 ~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~ 144 (889)
T KOG4658|consen 65 GDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL 144 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc
Confidence 56788888887766443 344477777777777778899999999999999998887776654 2
Q ss_pred CCCCccccCCCCCcc-cchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCH
Q 048813 65 VPETAATERPTEPTV-IGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRL 143 (552)
Q Consensus 65 ~~~~~~~~~~~~~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 143 (552)
.++.....+|..+.. ||.++.++++.+.|.+++..+++|+||||+||||||+.++|+...++.+||.++||+||+.++.
T Consensus 145 ~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 145 DPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred cchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 233333444444444 8999999999999998888999999999999999999999998448999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCccchHH---------
Q 048813 144 ENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD--------- 214 (552)
Q Consensus 144 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T--------- 214 (552)
..++++|++.++..+..+.....++....+.+.|+.|||+|||||||+..+|+.++.|+|...+|++|++|
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence 99999999999987766666666888999999999999999999999999999999999999999999998
Q ss_pred ------------------------------------------HHhhHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 048813 215 ------------------------------------------GTAKECGGLPLALITIGRAMACKKTPEEWTYAIEVLRT 252 (552)
Q Consensus 215 ------------------------------------------~i~~~c~glPLai~~i~~~l~~~~~~~~w~~~~~~l~~ 252 (552)
+++++|+|+|||+.++|+.|+.+.+..+|+++.+.+.+
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s 384 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKS 384 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccc
Confidence 88999999999999999999999999999999999988
Q ss_pred c-CCCCCCCCcccchhhhhhccCCCCcchhHHHhhhcCCCCCcccChHHHHHHHHHcCCccc-ccchhhhhhHHHHHHHH
Q 048813 253 S-SSQFPGLGNEVYPLLKFSYDSLPGDTIRSCLLYCCLYPEDYCISKENLIDCWIGEGFLTE-RDRFGEQNQGYYILGIL 330 (552)
Q Consensus 253 ~-~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~-~~~~~~~~~~~~~l~~L 330 (552)
. ..+.++..+.++.++++||+.||+ ++|.||+|||+||+||.|+++.++.+|+||||+.+ .++..+++.|++|+.+|
T Consensus 385 ~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 385 SLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred cccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 7 666667778999999999999996 99999999999999999999999999999999998 66788899999999999
Q ss_pred HHhccceecC----CCcEEEchhHHHHHHHHHhhccccccceEEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCC
Q 048813 331 LHACLLEEGG----DGEVKMHDVVRDMALWIACDIEKEKENFLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPT 406 (552)
Q Consensus 331 ~~~sll~~~~----~~~~~mHdlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~ 406 (552)
++++|+.... ..+|.|||+||++|.+++++.+..++++++..+.+..+.+....+...|++++.+|.+..++.-..
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~ 543 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE 543 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCC
Confidence 9999998753 378999999999999999988888888777776666678888889999999999999999888888
Q ss_pred CCccceeecccCC--CcccCchhhcCCCCceEEEcCCC-CCCcCCccccCcCcCcEEeccCCCCcccchhhhcCCCCCEE
Q 048813 407 CPHLLTCFLNRNG--LQMIPNDFFQFMPSLKVLNLSYS-KLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLKCL 483 (552)
Q Consensus 407 ~~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 483 (552)
++.|++|.+.+|. +..++..+|..++.|++|||++| .+.++|.+++.|.+||||+++++.++.+|.++++|++|.+|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 8899999999995 78889999999999999999988 88999999999999999999999999999999999999999
Q ss_pred ecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCCceEEEEE
Q 048813 484 DLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYLEVISFTL 551 (552)
Q Consensus 484 ~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 551 (552)
|+..+..+..+|. +...|++|++|.+..-. . ..+...+.++..|++|+.+++++
T Consensus 624 nl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~---~----------~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 624 NLEVTGRLESIPG-ILLELQSLRVLRLPRSA---L----------SNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccccccccccc-hhhhcccccEEEeeccc---c----------ccchhhHHhhhcccchhhheeec
Confidence 9999987777765 46779999999997533 1 12677889999999999988764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.9e-49 Score=449.73 Aligned_cols=470 Identities=21% Similarity=0.269 Sum_probs=343.6
Q ss_pred HhchHhhhcccccCccCCCcch-hchHHHHHHHHHHHHHHHHhcC--Cc-------cccccc-CCCCccccCCCCCcccc
Q 048813 13 RVGSQEIERLCLWGYCSKNCKS-SYDFGKKVTKKLQLVETLMGEG--IF-------EVVAEK-VPETAATERPTEPTVIG 81 (552)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~-~~~~~~~~~~~~~~~vG 81 (552)
|+.+++.|.+.|+..|.++... .....++|++++.++..+.+.. .. +.++.. ...-...+....+.+||
T Consensus 109 ~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG 188 (1153)
T PLN03210 109 DPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVG 188 (1153)
T ss_pred cHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccc
Confidence 4566777778776665433221 2345677888888877776421 00 011111 11111222334566999
Q ss_pred hHHHHHHHHHHhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEE---CCc-----------cC-HH
Q 048813 82 LQSQLEQVWRCLV--EEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVV---SKD-----------LR-LE 144 (552)
Q Consensus 82 r~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~---s~~-----------~~-~~ 144 (552)
|+++++++..+|. .+++++|+||||||+||||||+++|++. ..+|++.+|+.. +.. +. ..
T Consensus 189 ~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~ 265 (1153)
T PLN03210 189 IEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKL 265 (1153)
T ss_pred hHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccccchhH
Confidence 9999999999875 3578999999999999999999999987 678998888742 111 01 12
Q ss_pred HHHHHHHHHcCCCCcccccccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCccchHH----------
Q 048813 145 NIQETIGEKIGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD---------- 214 (552)
Q Consensus 145 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T---------- 214 (552)
.++++++.++..... ..... ...+++.++++|+||||||||+..+|+.+.....+.++|++||+|
T Consensus 266 ~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~ 340 (1153)
T PLN03210 266 HLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAH 340 (1153)
T ss_pred HHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc
Confidence 344455544421111 11111 135677899999999999999999999887766667889999988
Q ss_pred ---------------------------------------HHhhHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHhccCC
Q 048813 215 ---------------------------------------GTAKECGGLPLALITIGRAMACKKTPEEWTYAIEVLRTSSS 255 (552)
Q Consensus 215 ---------------------------------------~i~~~c~glPLai~~i~~~l~~~~~~~~w~~~~~~l~~~~~ 255 (552)
+|+++|+|+|||++++|+.|++ ++..+|+.+++.++....
T Consensus 341 ~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~ 419 (1153)
T PLN03210 341 GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD 419 (1153)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc
Confidence 6899999999999999999997 689999999999876432
Q ss_pred CCCCCCcccchhhhhhccCCCCcchhHHHhhhcCCCCCcccChHHHHHHHHHcCCcccccchhhhhhHHHHHHHHHHhcc
Q 048813 256 QFPGLGNEVYPLLKFSYDSLPGDTIRSCLLYCCLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYYILGILLHACL 335 (552)
Q Consensus 256 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~~~~~~~~~~~~~~l~~L~~~sl 335 (552)
..+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... ...++.|+++||
T Consensus 420 ------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksL 480 (1153)
T PLN03210 420 ------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSL 480 (1153)
T ss_pred ------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCC
Confidence 479999999999998745899999999999887553 4667777765432 123889999999
Q ss_pred ceecCCCcEEEchhHHHHHHHHHhhcc--ccccceEEEcCCc----------------------c----eeCCCcCCccc
Q 048813 336 LEEGGDGEVKMHDVVRDMALWIACDIE--KEKENFLVYAGVG----------------------L----VEAPDVRGWEK 387 (552)
Q Consensus 336 l~~~~~~~~~mHdlv~~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~----~~~~~~~~~~~ 387 (552)
++.. .+++.|||++|+||++++.+.. +.++.+++..... . .....+.++.+
T Consensus 481 i~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~ 559 (1153)
T PLN03210 481 IHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRN 559 (1153)
T ss_pred EEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcc
Confidence 9875 4689999999999999987642 3334444432100 0 00112456777
Q ss_pred ceEEEeecCCcc-------cCC-CCCCC-CccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCc
Q 048813 388 ARRLSLMHNQIT-------NLS-EIPTC-PHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQ 458 (552)
Q Consensus 388 l~~L~l~~~~l~-------~l~-~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 458 (552)
++.|.+..+... .+| .+..+ .+|+.|.+.++.+..+|..+ .+.+|+.|++++|.+..+|..+..+++|+
T Consensus 560 L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk 637 (1153)
T PLN03210 560 LLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLR 637 (1153)
T ss_pred ccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCC
Confidence 888877655321 122 23333 46899999999998898874 47899999999999999999999999999
Q ss_pred EEeccCC-CCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCC
Q 048813 459 HLDLSES-DIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASH 515 (552)
Q Consensus 459 ~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~ 515 (552)
+|+++++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|+.|++.+|..
T Consensus 638 ~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 638 NIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred EEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCC
Confidence 9999987 677888 4888999999999999989999987 89999999999988764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.6e-39 Score=316.69 Aligned_cols=230 Identities=34% Similarity=0.644 Sum_probs=193.9
Q ss_pred hHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCc
Q 048813 82 LQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLND 159 (552)
Q Consensus 82 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 159 (552)
||+++++|.+.|.+ ++.++|+|+||||+||||||++++++. ....+|+.++|+.+++..+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 79999999999987 789999999999999999999999996 468999999999999999999999999999987754
Q ss_pred cc-ccccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCccchHH------------------------
Q 048813 160 TW-KNRRIEQKALDIFRILKEQKFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD------------------------ 214 (552)
Q Consensus 160 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T------------------------ 214 (552)
.. ...+.++....+.+.|+++++|+||||||+...|+.+...++....|++||+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 43 55677788899999999999999999999999998888888777778999998
Q ss_pred ---------------------------HHhhHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHhccCCCCCCCCcccchh
Q 048813 215 ---------------------------GTAKECGGLPLALITIGRAMACKKTPEEWTYAIEVLRTSSSQFPGLGNEVYPL 267 (552)
Q Consensus 215 ---------------------------~i~~~c~glPLai~~i~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 267 (552)
+|+++|+|+|||+.++|++|+.+.+..+|..+++.+.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999765678999999988877765444455689999
Q ss_pred hhhhccCCCCcchhHHHhhhcCCCCCcccChHHHHHHHHHcCCccc
Q 048813 268 LKFSYDSLPGDTIRSCLLYCCLYPEDYCISKENLIDCWIGEGFLTE 313 (552)
Q Consensus 268 l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~ 313 (552)
+.+||+.||+ ++|.||+||++||+++.|+++.++++|+++|++..
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999 89999999999999999999999999999999876
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3e-16 Score=131.89 Aligned_cols=130 Identities=26% Similarity=0.484 Sum_probs=91.8
Q ss_pred CCCcCCcccceEEEeecCCcccC-CCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcC
Q 048813 379 APDVRGWEKARRLSLMHNQITNL-SEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSL 457 (552)
Q Consensus 379 ~~~~~~~~~l~~L~l~~~~l~~l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L 457 (552)
++..-.++++.+|.+++|.+..+ |.+..+.+|++|++.+|++..+|.. ++.++.||.|+++.|.+..+|..||.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchh
Confidence 34444556677777777777665 4567777777777777777777776 566777777777777777777777777777
Q ss_pred cEEeccCCCCc--ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 458 QHLDLSESDIE--ELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 458 ~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
+.||+..|++. .+|..+..+..|+.|.++.|. ...+|++ ++++++||.|.+.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lr 158 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLR 158 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeec
Confidence 77777777665 467666666667777776663 5666666 6777777766663
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=6.7e-14 Score=139.68 Aligned_cols=147 Identities=31% Similarity=0.496 Sum_probs=119.6
Q ss_pred ceEEEcCCcceeCC-CcCCcccceEEEeecCCcccC-CCCCCCCccceeecccCCCc--ccCchhhcCCCCceEEEcCCC
Q 048813 367 NFLVYAGVGLVEAP-DVRGWEKARRLSLMHNQITNL-SEIPTCPHLLTCFLNRNGLQ--MIPNDFFQFMPSLKVLNLSYS 442 (552)
Q Consensus 367 ~~~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~l~~l-~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~ 442 (552)
.++.........+| .+..+.++.+|++.+|.+..+ ..++.++.||++.+..|+++ .+|+++| .+.-|.+|||++|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 44544444444444 345567889999999988776 35788899999999999776 5888866 5899999999999
Q ss_pred CCCcCCccccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCC
Q 048813 443 KLTNLPVGISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHN 516 (552)
Q Consensus 443 ~l~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~ 516 (552)
++.+.|..+..-+++-.|+|++|+|.++|.+ +-+|.-|-.|||++|. +..+|+. +..|..|++|.+++...+
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhh
Confidence 9999999999999999999999999999976 4588899999999885 8999998 899999999999654443
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=5.6e-14 Score=118.30 Aligned_cols=128 Identities=32% Similarity=0.556 Sum_probs=72.0
Q ss_pred CcCCcccceEEEeecCCcccCC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc--CCccccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNLS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN--LPVGISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L 457 (552)
.+..+.++..|++.+|+++.+| .++.+++|+.|++.-|.+..+|.+ |+.++-|.+|||++|++.+ +|..|-.++.|
T Consensus 51 nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 3444455555666666665554 245555566666555555555555 4455556666666655543 55555555555
Q ss_pred cEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 458 QHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 458 ~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
+-|.++.|.+.-+|..+++|++|+.|.++.|. +-++|.+ ++.++.|+.|++.
T Consensus 130 ralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiq 181 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQ 181 (264)
T ss_pred HHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcc
Confidence 55555555555555555555566665555553 5555555 5555555555553
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.29 E-value=1.1e-11 Score=141.82 Aligned_cols=128 Identities=28% Similarity=0.324 Sum_probs=63.9
Q ss_pred CcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC-cCCccccCcCcCcEEec
Q 048813 384 GWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT-NLPVGISKVVSLQHLDL 462 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l 462 (552)
.+.++++|++++|.+........+++|++|++++|.+....+..++.+++|++|++++|.+. .+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 34455555555555443222233455555555555444222222445555555555555543 34555555555555555
Q ss_pred cCCCCc-ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 463 SESDIE-ELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 463 ~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 245 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVY 245 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcC
Confidence 555443 34555555555555555555433344444 55555555555543
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.24 E-value=2.6e-11 Score=138.92 Aligned_cols=129 Identities=25% Similarity=0.352 Sum_probs=80.0
Q ss_pred CcccceEEEeecCCccc-CC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc-CCccccCcCcCcEE
Q 048813 384 GWEKARRLSLMHNQITN-LS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN-LPVGISKVVSLQHL 460 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L 460 (552)
.+++++.|++++|.+.. ++ .+..+++|+.|++.+|.+....+..+.++++|++|++++|.+.. +|..++.+.+|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 35566777777766643 22 35566677777777666543333335666677777777766653 56666667777777
Q ss_pred eccCCCCc-ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 461 DLSESDIE-ELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 461 ~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.++
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 270 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQN 270 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCC
Confidence 77666554 56666666777777777666543455554 666666766666443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.20 E-value=2.7e-12 Score=122.18 Aligned_cols=110 Identities=37% Similarity=0.550 Sum_probs=101.0
Q ss_pred CCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCc
Q 048813 379 APDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQ 458 (552)
Q Consensus 379 ~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 458 (552)
.+...++.++..|++..|++..+|.|+.|..|..|++..|.++-+|....+.+.+|.+|||+.|+++++|..++.|.+|.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 34566788888999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEeccCCCCcccchhhhcCCCCCEEecCCCc
Q 048813 459 HLDLSESDIEELPGELKALVNLKCLDLEYTR 489 (552)
Q Consensus 459 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 489 (552)
+||+++|.|+.+|.++++| +|+.|-+.+|.
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 9999999999999999999 99999988885
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.20 E-value=2.5e-12 Score=128.60 Aligned_cols=127 Identities=28% Similarity=0.457 Sum_probs=96.9
Q ss_pred CCCcCCcccceEEEeecCCcccCCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcC
Q 048813 379 APDVRGWEKARRLSLMHNQITNLSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSL 457 (552)
Q Consensus 379 ~~~~~~~~~l~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L 457 (552)
.+++-.+..+..|+++.|.+.+.|. +...+++-+|++++|++..+|...|-+++-|-+|||++|.+..+|+.+..|.+|
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhh
Confidence 3456677889999999999998874 677789999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCCCc-----ccchhhhcCCCCCEEecCCCcC-ccccchhhhcCCCCcceeee
Q 048813 458 QHLDLSESDIE-----ELPGELKALVNLKCLDLEYTRN-LITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 458 ~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~-l~~lP~~~i~~l~~L~~L~l 510 (552)
++|+|++|.+. .+| .+++|++|.+++++. +..+|.. +..|.||+.+++
T Consensus 176 qtL~Ls~NPL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDl 229 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDL 229 (1255)
T ss_pred hhhhcCCChhhHHHHhcCc----cchhhhhhhcccccchhhcCCCc-hhhhhhhhhccc
Confidence 99999988544 333 234455555554431 2344444 445555555555
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.16 E-value=3.4e-12 Score=126.89 Aligned_cols=142 Identities=25% Similarity=0.331 Sum_probs=114.6
Q ss_pred CCCcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcC
Q 048813 379 APDVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVV 455 (552)
Q Consensus 379 ~~~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~ 455 (552)
.-.+.+++.++.|.+..|.+..+.+ |..|.+++.|+|..|.+..+...++-+++.|+.|+|++|.|..+ +++++..+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 3456777788888888888877753 66778888888888888888887778889999999999988886 77888888
Q ss_pred cCcEEeccCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccc
Q 048813 456 SLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASED 524 (552)
Q Consensus 456 ~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 524 (552)
.|+.|+|+.|+|+++|+ ++..|..|+.|+|+.|. +..+.++.+..+++|+.|++ .+|.++.+.++
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdL---r~N~ls~~IED 383 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDL---RSNELSWCIED 383 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcC---cCCeEEEEEec
Confidence 89999999999988874 57788889999999885 78888888888888888888 56666555554
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.1e-10 Score=102.96 Aligned_cols=133 Identities=27% Similarity=0.350 Sum_probs=56.1
Q ss_pred CCcCCcccceEEEeecCCcccCCCCC-CCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccc-cCcCcC
Q 048813 380 PDVRGWEKARRLSLMHNQITNLSEIP-TCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI-SKVVSL 457 (552)
Q Consensus 380 ~~~~~~~~l~~L~l~~~~l~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L 457 (552)
+...+..+++.|++.+|.+..+..+. .+.+|+.|++++|.+..++. +..++.|+.|++++|.++.+++.+ ..+++|
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 34444457889999999998887776 57889999999999988775 677899999999999999987655 368899
Q ss_pred cEEeccCCCCcccc--hhhhcCCCCCEEecCCCcCccccch---hhhcCCCCcceeeecCcCC
Q 048813 458 QHLDLSESDIEELP--GELKALVNLKCLDLEYTRNLITIPR---QLISNLSRLHVLRMFGASH 515 (552)
Q Consensus 458 ~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~---~~i~~l~~L~~L~l~~~~~ 515 (552)
+.|.+++|+|..+. ..+..+++|++|++.+|+ +...+. .++..+++|+.|+...+..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 99999999887654 357788999999999997 444443 3578899999998865543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.05 E-value=3.2e-11 Score=126.26 Aligned_cols=135 Identities=28% Similarity=0.446 Sum_probs=91.8
Q ss_pred CCCcC-CcccceEEEeecCCcccCCCC---------------------------CCCCccceeecccCCCcccCchhhcC
Q 048813 379 APDVR-GWEKARRLSLMHNQITNLSEI---------------------------PTCPHLLTCFLNRNGLQMIPNDFFQF 430 (552)
Q Consensus 379 ~~~~~-~~~~l~~L~l~~~~l~~l~~~---------------------------~~~~~L~~L~l~~~~l~~~~~~~~~~ 430 (552)
++.+. +++.+++|++..|.+..+|.. ..++.|+.|++.+|.+..---..+.+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 44443 477888899888887654430 11123444455555443211112556
Q ss_pred CCCceEEEcCCCCCCcCCc-cccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceee
Q 048813 431 MPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLR 509 (552)
Q Consensus 431 l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~ 509 (552)
+++|++|+|++|.+..+|. .+.++..|+.|+|+||.++++|.++.++..|++|...+|. +..+|. +..++.|+.++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fPe--~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFPE--LAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeechh--hhhcCcceEEe
Confidence 7888888888888888875 4677788888888888888888888888888888887774 778884 77888888888
Q ss_pred ecCcCCCCCc
Q 048813 510 MFGASHNAFD 519 (552)
Q Consensus 510 l~~~~~~~~~ 519 (552)
+ ++|.++
T Consensus 459 l---S~N~L~ 465 (1081)
T KOG0618|consen 459 L---SCNNLS 465 (1081)
T ss_pred c---ccchhh
Confidence 7 555554
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.03 E-value=1.1e-09 Score=126.14 Aligned_cols=126 Identities=25% Similarity=0.353 Sum_probs=112.0
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCC-CCCcCCccccCcCcCcEEeccC
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYS-KLTNLPVGISKVVSLQHLDLSE 464 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~ 464 (552)
.+++.|.+.++.+..+|....+.+|+.|++.++.+..++.. +..+++|++|+|+++ .+..+| .++.+++|++|++++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 46999999999999888766788999999999999888876 567999999999987 577788 588999999999999
Q ss_pred C-CCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCC
Q 048813 465 S-DIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASH 515 (552)
Q Consensus 465 ~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~ 515 (552)
| .+.++|.++++|++|++|++++|.++..+|.. + ++++|++|++.+|+.
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSR 716 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCC
Confidence 8 78899999999999999999999999999985 3 899999999998864
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=1.2e-08 Score=116.39 Aligned_cols=252 Identities=13% Similarity=0.112 Sum_probs=145.8
Q ss_pred cCCCCCcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHH
Q 048813 72 ERPTEPTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETI 150 (552)
Q Consensus 72 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i 150 (552)
+++..+.+|-|+..++.+.. ....+++.|.|++|.||||++..+.+.. . .++|+++... .+...+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHH
Confidence 33445567788877666643 2356899999999999999999987542 2 5899998644 3555565666
Q ss_pred HHHcCCCCcc-----------cccccHHHHHHHHHHHhc--cceEEEEEcccccccc--cc-cccccCCCCCCCccchHH
Q 048813 151 GEKIGLLNDT-----------WKNRRIEQKALDIFRILK--EQKFVLLLDDLWQRVD--LV-KVGVPLPGPQSSRSLWFD 214 (552)
Q Consensus 151 ~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~--~~-~~~~~~~~~~~~s~il~T 214 (552)
+..++..... ....+.......+...+. +.+++||+||+...++ .. .+..-+.....+.++|+|
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 6655311110 001122233333333333 5789999999865421 01 110000000111111111
Q ss_pred ---------------------------------------------------HHhhHhCCCchHHHHHHHHhccCCCHHHH
Q 048813 215 ---------------------------------------------------GTAKECGGLPLALITIGRAMACKKTPEEW 243 (552)
Q Consensus 215 ---------------------------------------------------~i~~~c~glPLai~~i~~~l~~~~~~~~w 243 (552)
++.+.|+|.|+++..++..+...... .
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~--~ 236 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSS--L 236 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc--h
Confidence 78899999999999888776542210 0
Q ss_pred HHHHHHHhccCCCCCCCCcccchhhhh-hccCCCCcchhHHHhhhcCCCCCcccChHHHHHHHHHcCCcccccchhhhhh
Q 048813 244 TYAIEVLRTSSSQFPGLGNEVYPLLKF-SYDSLPGDTIRSCLLYCCLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQ 322 (552)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~~~~~~~~~~ 322 (552)
......+... ....+...+.- .++.||+ +.+.++...|+++ .++.+.+-. +.. ...
T Consensus 237 ~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~l~~~------l~~-------~~~ 293 (903)
T PRK04841 237 HDSARRLAGI------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDALIVR------VTG-------EEN 293 (903)
T ss_pred hhhhHhhcCC------CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHHHHHH------HcC-------CCc
Confidence 0111111000 01234444433 3789999 8999999999986 233332211 111 122
Q ss_pred HHHHHHHHHHhcccee-c--CCCcEEEchhHHHHHHHHH
Q 048813 323 GYYILGILLHACLLEE-G--GDGEVKMHDVVRDMALWIA 358 (552)
Q Consensus 323 ~~~~l~~L~~~sll~~-~--~~~~~~mHdlv~~~~~~~~ 358 (552)
....++.|.+.+++.. . +...|.+|++++++.+...
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 3567899999999653 2 2347899999999998764
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.97 E-value=1e-10 Score=111.60 Aligned_cols=127 Identities=28% Similarity=0.398 Sum_probs=97.2
Q ss_pred eecCCcccCCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcccc
Q 048813 393 LMHNQITNLSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP 471 (552)
Q Consensus 393 l~~~~l~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~lp 471 (552)
+++|.+..++. ++.+++|..|++++|.+..+|.+ ++.+..|+.|+++.|.+..+|+.+..++.|+++-.+.+++.++|
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccC
Confidence 33444444332 46677888888888888888877 44577788888888888888888777777888777778888887
Q ss_pred hh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccc
Q 048813 472 GE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSI 526 (552)
Q Consensus 472 ~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 526 (552)
.+ +.++.+|.+||+.+| .+..+|+. +|+|++|++|.+. +|.|+ .|+..+
T Consensus 498 ~~~l~nm~nL~tLDL~nN-dlq~IPp~-LgnmtnL~hLeL~---gNpfr-~Pr~~i 547 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNN-DLQQIPPI-LGNMTNLRHLELD---GNPFR-QPRHQI 547 (565)
T ss_pred hHHhhhhhhcceeccCCC-chhhCChh-hccccceeEEEec---CCccC-CCHHHH
Confidence 66 999999999999988 58999997 9999999999994 45554 444444
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.93 E-value=6.7e-10 Score=110.86 Aligned_cols=128 Identities=27% Similarity=0.419 Sum_probs=76.2
Q ss_pred cCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCc
Q 048813 382 VRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQ 458 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~ 458 (552)
+..-.++..|++++|.+..+. .|..+.+|.+|.|+.|.+..+|...|+++++|+.|+|..|.|... .-.|..|..|+
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 333346777777777776653 356666777777777777777777677677777777777766544 33455555555
Q ss_pred EEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 459 HLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 459 ~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
.|.+..|.+..|.++ +..|.++++|+|..|+ +..+-.+-+-+|++|+.|++
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhcc
Confidence 555555555555433 3445555555555553 44444443445555555555
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.91 E-value=1.4e-08 Score=104.10 Aligned_cols=117 Identities=17% Similarity=0.133 Sum_probs=84.7
Q ss_pred CCCcccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHH
Q 048813 75 TEPTVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETI 150 (552)
Q Consensus 75 ~~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 150 (552)
.++.++||++++++|...+.. .....+.|+|++|+|||++++.++++. ......-..+++++....+...++..|
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 446689999999999988743 344668899999999999999999986 222223456777777777788899999
Q ss_pred HHHcCCCCcccccccHHHHHHHHHHHhc--cceEEEEEcccccc
Q 048813 151 GEKIGLLNDTWKNRRIEQKALDIFRILK--EQKFVLLLDDLWQR 192 (552)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 192 (552)
+.++..........+.++....+.+.+. ++..+||+|+++..
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 9998652211123345566666666665 45689999999764
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.9e-09 Score=95.04 Aligned_cols=121 Identities=28% Similarity=0.329 Sum_probs=58.6
Q ss_pred ceEEEcCCcceeCCCcC-CcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC
Q 048813 367 NFLVYAGVGLVEAPDVR-GWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT 445 (552)
Q Consensus 367 ~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~ 445 (552)
..+...+..+..+.... .+.+++.|++++|.+..+..+..+++|++|.+++|.+..+...+...+++|+.|++++|++.
T Consensus 22 ~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 22 RELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp --------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---
T ss_pred ccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCC
Confidence 34455555566565555 46789999999999999999999999999999999999887654456899999999999887
Q ss_pred cCC--ccccCcCcCcEEeccCCCCcccch----hhhcCCCCCEEecCC
Q 048813 446 NLP--VGISKVVSLQHLDLSESDIEELPG----ELKALVNLKCLDLEY 487 (552)
Q Consensus 446 ~lp--~~~~~l~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~ 487 (552)
.+- ..+..+++|+.|++.+|.+...+. -+..+++|+.||-..
T Consensus 102 ~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 102 DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 763 467789999999999998887663 378999999999653
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=1.8e-10 Score=120.72 Aligned_cols=127 Identities=28% Similarity=0.397 Sum_probs=109.6
Q ss_pred cccceEEEeecCCccc--CCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEec
Q 048813 385 WEKARRLSLMHNQITN--LSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDL 462 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~--l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 462 (552)
++.+..|.+.+|.+.. +|-+.++++|++|++.+|.+..+|...+.++..|..|+|+||+++.+|..+-.+..|++|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 4467778888888765 56788899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhhhcCCCCCEEecCCCcCccc--cchhhhcCCCCcceeeecCcCC
Q 048813 463 SESDIEELPGELKALVNLKCLDLEYTRNLIT--IPRQLISNLSRLHVLRMFGASH 515 (552)
Q Consensus 463 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~--lP~~~i~~l~~L~~L~l~~~~~ 515 (552)
.+|++..+| ++..++.|+.+|++.|. +.. +|. --..++|++|++.|...
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~--~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPE--ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecccch-hhhhhhhh--hCCCcccceeeccCCcc
Confidence 999999999 88999999999999774 554 343 33447999999977654
No 21
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=1.3e-07 Score=91.44 Aligned_cols=90 Identities=17% Similarity=0.296 Sum_probs=59.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
.+..++.|+|++|+||||+++.+++.. .. ... ..+|+ +....+..+++..|+..++.+... .+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~---~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG---RDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC---CCHHHHHHHHHH
Confidence 445689999999999999999999886 21 111 22333 333456778899999998875432 222222223322
Q ss_pred -----HhccceEEEEEcccccc
Q 048813 176 -----ILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 176 -----~l~~k~~LlVlDdv~~~ 192 (552)
...+++.++|+||++..
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l 135 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNL 135 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccC
Confidence 22567899999999875
No 22
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.84 E-value=3.3e-08 Score=100.16 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=81.9
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCC---CeEEEEEECCccCHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNF---NYVIWVVVSKDLRLENIQE 148 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~ 148 (552)
++.++||++++++|...+.. .....+.|+|++|+|||++++++++......... -..+|+.+....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 34689999999999998863 3456899999999999999999998752111111 2457788777777788899
Q ss_pred HHHHHc---CCCCcccccccHHHHHHHHHHHhc--cceEEEEEcccccc
Q 048813 149 TIGEKI---GLLNDTWKNRRIEQKALDIFRILK--EQKFVLLLDDLWQR 192 (552)
Q Consensus 149 ~i~~~l---~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 192 (552)
.|+.++ +...+. ...+..+....+.+.+. +++++||+|+++..
T Consensus 94 ~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 94 ELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 999988 322211 12234445555555553 56789999999765
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.81 E-value=2.9e-08 Score=107.47 Aligned_cols=100 Identities=29% Similarity=0.427 Sum_probs=49.1
Q ss_pred cceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCC
Q 048813 387 KARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESD 466 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 466 (552)
.++.|++++|.+..+|... +.+|+.|++.+|.+..+|..+ ..+|+.|+|++|++..+|..+. .+|++|++++|+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 4555566655555554321 235555555555555555432 1245555555555555554432 245555555555
Q ss_pred CcccchhhhcCCCCCEEecCCCcCccccc
Q 048813 467 IEELPGELKALVNLKCLDLEYTRNLITIP 495 (552)
Q Consensus 467 l~~lp~~i~~L~~L~~L~l~~~~~l~~lP 495 (552)
+..+|..+. .+|++|++++|. +..+|
T Consensus 274 L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP 299 (754)
T PRK15370 274 ISCLPENLP--EELRYLSVYDNS-IRTLP 299 (754)
T ss_pred cCccccccC--CCCcEEECCCCc-cccCc
Confidence 555554432 245555555542 44444
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=5e-08 Score=105.19 Aligned_cols=117 Identities=28% Similarity=0.302 Sum_probs=65.3
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCC
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSES 465 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 465 (552)
++++.|++++|.+..+|.. .++|+.|++.+|.+..+|.. +..|+.|++++|+++.+|.. +++|+.|++++|
T Consensus 242 ~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N 312 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN 312 (788)
T ss_pred CCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc----hhhcCEEECcCCcccccccc---ccccceeECCCC
Confidence 4555555555555555432 24555555555555544431 24466666666666666642 356777777777
Q ss_pred CCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccc
Q 048813 466 DIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEAS 522 (552)
Q Consensus 466 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~ 522 (552)
.+..+|... .+|+.|++++|. +..+|. + ..+|++|++. +|.+..+|
T Consensus 313 ~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~LdLS---~N~Ls~LP 358 (788)
T PRK15387 313 QLASLPALP---SELCKLWAYNNQ-LTSLPT--L--PSGLQELSVS---DNQLASLP 358 (788)
T ss_pred ccccCCCCc---ccccccccccCc-cccccc--c--ccccceEecC---CCccCCCC
Confidence 777666422 245566666653 556664 1 2467778874 44444444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=2e-09 Score=107.41 Aligned_cols=132 Identities=25% Similarity=0.438 Sum_probs=108.9
Q ss_pred CcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEE
Q 048813 381 DVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHL 460 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 460 (552)
....+..+..++++.|.+..+|.-...--|++|.+.+|.+..+|..+ +.+..|..||.+.|.+..+|..++.+..|+.|
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence 34456678888999898888776444455899999999998888884 47888999999999999999999999999999
Q ss_pred eccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCc
Q 048813 461 DLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFD 519 (552)
Q Consensus 461 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~ 519 (552)
+++.|++..+|++++.| .|..||++.| ++..+|-. |.+|+.|++|.+ .+|.+.
T Consensus 195 ~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~L---enNPLq 247 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQL---ENNPLQ 247 (722)
T ss_pred HHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeee---ccCCCC
Confidence 99999999999998854 5899999866 58899987 899999999998 445444
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.66 E-value=6.3e-08 Score=104.97 Aligned_cols=116 Identities=28% Similarity=0.425 Sum_probs=77.2
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCC
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSES 465 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 465 (552)
.+++.|++++|.+..+|... .++|+.|++.+|.+..+|... .++|+.|++++|.++.+|..+. .+|+.|++++|
T Consensus 283 ~sL~~L~Ls~N~Lt~LP~~l-p~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N 356 (754)
T PRK15370 283 EELRYLSVYDNSIRTLPAHL-PSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLPASLP--PELQVLDVSKN 356 (754)
T ss_pred CCCcEEECCCCccccCcccc-hhhHHHHHhcCCccccCCccc---cccceeccccCCccccCChhhc--CcccEEECCCC
Confidence 36777777777777665311 235677777777776666543 2567777777777777776654 57778888877
Q ss_pred CCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 466 DIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 466 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++..+|..+. ++|++|++++|. +..+|+. +. .+|+.|++.++
T Consensus 357 ~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~-l~--~sL~~LdLs~N 398 (754)
T PRK15370 357 QITVLPETLP--PTITTLDVSRNA-LTNLPEN-LP--AALQIMQASRN 398 (754)
T ss_pred CCCcCChhhc--CCcCEEECCCCc-CCCCCHh-HH--HHHHHHhhccC
Confidence 7777776553 577888887774 6677765 32 35666666443
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=3.4e-08 Score=108.73 Aligned_cols=119 Identities=25% Similarity=0.362 Sum_probs=95.8
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCC--cccCCC--CCCCCccceeecccC-CCcccCchhhcCCCCceEEEcCCCC
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQ--ITNLSE--IPTCPHLLTCFLNRN-GLQMIPNDFFQFMPSLKVLNLSYSK 443 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--l~~l~~--~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~ 443 (552)
+..........+.....++++.|-+..|. +..++. |..++.|++|++++| .+.++|.. ++.+-+||||+++++.
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTG 606 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCC
Confidence 33333344445555556689999999886 566554 788999999999988 67788876 7889999999999999
Q ss_pred CCcCCccccCcCcCcEEeccCC-CCcccchhhhcCCCCCEEecCCC
Q 048813 444 LTNLPVGISKVVSLQHLDLSES-DIEELPGELKALVNLKCLDLEYT 488 (552)
Q Consensus 444 l~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~ 488 (552)
++.+|.++++|..|.+|++..+ .+..+|.....|++|++|.+...
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 9999999999999999999988 55566666667999999999755
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.63 E-value=7.5e-08 Score=103.87 Aligned_cols=119 Identities=26% Similarity=0.324 Sum_probs=95.4
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCC
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSES 465 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 465 (552)
.+++.|++++|.+..+|.+ ..+|..|++.+|.+..+|.. ..+|+.|++++|.++.+|... .+|+.|++++|
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N 412 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVLP---SELKELMVSGN 412 (788)
T ss_pred cccceEecCCCccCCCCCC--CcccceehhhccccccCccc----ccccceEEecCCcccCCCCcc---cCCCEEEccCC
Confidence 4688899999888887764 35778888888888877753 357999999999999988643 57899999999
Q ss_pred CCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccc
Q 048813 466 DIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEA 521 (552)
Q Consensus 466 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~ 521 (552)
.++.+|.. ..+|+.|++++|. +..+|.. ++++++|+.|++ ++|.+++.
T Consensus 413 ~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~s-l~~L~~L~~LdL---s~N~Ls~~ 460 (788)
T PRK15387 413 RLTSLPML---PSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVNL---EGNPLSER 460 (788)
T ss_pred cCCCCCcc---hhhhhhhhhccCc-ccccChH-HhhccCCCeEEC---CCCCCCch
Confidence 99999864 3468889999885 8899987 899999999999 55556543
No 29
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.61 E-value=1.2e-07 Score=89.10 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc--cCHHHHHHHH-----HHHcCCCCcccccccHHH
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD--LRLENIQETI-----GEKIGLLNDTWKNRRIEQ 168 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~ 168 (552)
+....++|+|.+|+|||||++.+|++. . ..+|+.++|+.+... .+..++++.+ +.+++.+... .......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~ 90 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEM 90 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHH
Confidence 345789999999999999999999987 3 338999999997776 7899999999 4333321100 0011111
Q ss_pred HHHHHHHH-hccceEEEEEcccccc
Q 048813 169 KALDIFRI-LKEQKFVLLLDDLWQR 192 (552)
Q Consensus 169 ~~~~l~~~-l~~k~~LlVlDdv~~~ 192 (552)
........ -.++++++++|++...
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHh
Confidence 22222222 2478999999998654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=6e-09 Score=96.03 Aligned_cols=126 Identities=29% Similarity=0.443 Sum_probs=94.8
Q ss_pred CCcccceEEEeecCCcccCCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEe
Q 048813 383 RGWEKARRLSLMHNQITNLSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLD 461 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 461 (552)
..|..+..+++++|.+..+.. ..-.+.++.|+++.|.+..+.. +..+.+|..|||++|.++++-..-.+|-|.++|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 456678888888888887754 3455778888888888766554 5668888888888888877755555677888888
Q ss_pred ccCCCCcccchhhhcCCCCCEEecCCCcCccccch-hhhcCCCCcceeeecC
Q 048813 462 LSESDIEELPGELKALVNLKCLDLEYTRNLITIPR-QLISNLSRLHVLRMFG 512 (552)
Q Consensus 462 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~~i~~l~~L~~L~l~~ 512 (552)
|.+|.+.++. .+.+|.+|..||+++|+ +..+.. .-||+|+.|++|.+.+
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcC
Confidence 8888888774 67888888888888885 665542 1278888888888844
No 31
>PTZ00202 tuzin; Provisional
Probab=98.58 E-value=8.4e-07 Score=87.45 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=59.5
Q ss_pred CCCCCcccchHHHHHHHHHHhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHH
Q 048813 73 RPTEPTVIGLQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQET 149 (552)
Q Consensus 73 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 149 (552)
+++.+.|+||+.++.++...|.+ +..+++.|.|++|+|||||++.+.... . ...++++.. +..+++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~--~~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----G--MPAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----C--ceEEEECCC---CHHHHHHH
Confidence 34456799999999999999864 245689999999999999999998765 1 113333333 67899999
Q ss_pred HHHHcCCCC
Q 048813 150 IGEKIGLLN 158 (552)
Q Consensus 150 i~~~l~~~~ 158 (552)
++.+||.+.
T Consensus 329 LL~ALGV~p 337 (550)
T PTZ00202 329 VVKALGVPN 337 (550)
T ss_pred HHHHcCCCC
Confidence 999999743
No 32
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.56 E-value=2e-07 Score=84.54 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHhc---cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV---EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
||||+++++++...+. ....+.+.|+|.+|+|||+|.++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999993 3456899999999999999999999887
No 33
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.56 E-value=1.5e-07 Score=80.04 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=67.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcc--cCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLES--TTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
-+++.|+|.+|+|||++++.++++.... ...-..++|+.+....+...+...|+.+++..... ..+..+....+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHH
Confidence 4689999999999999999998876210 01134677999888889999999999999876543 3456666777888
Q ss_pred Hhccce-EEEEEcccccc
Q 048813 176 ILKEQK-FVLLLDDLWQR 192 (552)
Q Consensus 176 ~l~~k~-~LlVlDdv~~~ 192 (552)
.+...+ .+||+|++...
T Consensus 82 ~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHCTEEEEEEETTHHH
T ss_pred HHHhcCCeEEEEeChHhc
Confidence 776655 59999998654
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.54 E-value=8.6e-07 Score=88.10 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCcccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETI 150 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 150 (552)
...|+|+++.++.+...+.. .....+.|+|++|+|||++|+.+++.. ...+ .++... .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecc-cccChHHHHHH
Confidence 35599999999999877752 345678999999999999999999986 2222 112211 11222233344
Q ss_pred HHHcCCCC----cccccccHHHHHHHHHHHhccceEEEEEcccccc
Q 048813 151 GEKIGLLN----DTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 151 ~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
+..++... ++++..+ ....+.+...+.+.+..+|+|+..+.
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~ 141 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAA 141 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccc
Confidence 44443211 0001111 11223355666777778888875443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.8e-08 Score=92.85 Aligned_cols=109 Identities=31% Similarity=0.367 Sum_probs=96.3
Q ss_pred cccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccC
Q 048813 385 WEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSE 464 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 464 (552)
.+++|+|++++|.+..+..+..+++|..|++++|.+..+.. +-.++-+++.|.|.+|.++.+. .+++|.+|.+||+++
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSS 383 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccc
Confidence 46899999999999998888889999999999998877654 3457889999999999999886 789999999999999
Q ss_pred CCCcccc--hhhhcCCCCCEEecCCCcCccccch
Q 048813 465 SDIEELP--GELKALVNLKCLDLEYTRNLITIPR 496 (552)
Q Consensus 465 ~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~ 496 (552)
|+|.++. .+|++|+.|+++.+.+|. +..+|+
T Consensus 384 N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 384 NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred cchhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 9999875 579999999999999997 777775
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.50 E-value=1.5e-06 Score=91.72 Aligned_cols=252 Identities=18% Similarity=0.213 Sum_probs=143.9
Q ss_pred CcccchHHHHHHHHHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHc
Q 048813 77 PTVIGLQSQLEQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKI 154 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l 154 (552)
+.-|-|...+ +.|.. ...+.+.|..++|.|||||+...... ...-..+.|.+++... +...+..-++..+
T Consensus 19 ~~~v~R~rL~----~~L~~~~~~RL~li~APAGfGKttl~aq~~~~----~~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRPRLL----DRLRRANDYRLILISAPAGFGKTTLLAQWREL----AADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccHHHH----HHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh----cCcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 3344666554 44444 36799999999999999999998763 3455689999987654 5666777777766
Q ss_pred CCCCccc-----------ccccHHHHHHHHHHHhc--cceEEEEEcccccccc------cccccccCCCCCCCccchHH-
Q 048813 155 GLLNDTW-----------KNRRIEQKALDIFRILK--EQKFVLLLDDLWQRVD------LVKVGVPLPGPQSSRSLWFD- 214 (552)
Q Consensus 155 ~~~~~~~-----------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~s~il~T- 214 (552)
+.-.+.. ...+.......+...+. .++..+||||..-..+ +.-+....| ++-.+++|
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l~lvv~S 167 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENLTLVVTS 167 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCeEEEEEe
Confidence 5221111 12233344444555443 3588999999643211 111222222 23344443
Q ss_pred ---------------------------------HHhhHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHhccCCC-----
Q 048813 215 ---------------------------------GTAKECGGLPLALITIGRAMACKKTPEEWTYAIEVLRTSSSQ----- 256 (552)
Q Consensus 215 ---------------------------------~i~~~c~glPLai~~i~~~l~~~~~~~~w~~~~~~l~~~~~~----- 256 (552)
+....-+|+|+--..+.... ...+-|-..++-..-....
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~---~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALY---DRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHH---hhcccHHHHHHHHHHHccCCCcHH
Confidence 33444455666554444433 2345555544321111110
Q ss_pred --CCCCC---cccchhh-hhhccCCCCcchhHHHhhhcCCCCCcccChHHHHHHHHHcCCcccccchhhhhhHHHHHHHH
Q 048813 257 --FPGLG---NEVYPLL-KFSYDSLPGDTIRSCLLYCCLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYYILGIL 330 (552)
Q Consensus 257 --~~~~~---~~~~~~l-~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~~~~~~~~~~~~~~l~~L 330 (552)
.++.. +-+..-+ .=-++.||+ +++.+++.+|+++.-. ..|... ...+..+...+++|
T Consensus 245 q~~~~LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~----~eL~~~------------Ltg~~ng~amLe~L 307 (894)
T COG2909 245 QSLRGLSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFN----DELCNA------------LTGEENGQAMLEEL 307 (894)
T ss_pred HHhhhccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhh----HHHHHH------------HhcCCcHHHHHHHH
Confidence 00000 0111111 123788999 8999999999985421 222221 12234566679999
Q ss_pred HHhcccee---cCCCcEEEchhHHHHHHHHHh
Q 048813 331 LHACLLEE---GGDGEVKMHDVVRDMALWIAC 359 (552)
Q Consensus 331 ~~~sll~~---~~~~~~~mHdlv~~~~~~~~~ 359 (552)
.+++++-. .....|+.|.++.+|.+.-..
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 99999754 267789999999999876543
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.50 E-value=1.6e-08 Score=101.07 Aligned_cols=141 Identities=27% Similarity=0.384 Sum_probs=103.1
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL 447 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l 447 (552)
+....+.....|.....-.++.|-+++|++..+|. +.....|..|+.++|.+..+|.. ++.+.+|+.|+++.|++..+
T Consensus 126 l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred hhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhC
Confidence 33333444445554455567888888888887753 56667788888888888888876 56788888888888888888
Q ss_pred CccccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCC---cceeeecCc
Q 048813 448 PVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSR---LHVLRMFGA 513 (552)
Q Consensus 448 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~---L~~L~l~~~ 513 (552)
|+.++.| .|..||+++|++..+|-+|.+|+.|++|-|.+|. +.+-|.. |..... .++|+..-|
T Consensus 205 p~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAq-IC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 205 PEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQ-ICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHH-HHhccceeeeeeecchhc
Confidence 8888855 6788889888888899888888899999888886 6666665 433333 345555444
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.48 E-value=1.1e-07 Score=68.66 Aligned_cols=56 Identities=38% Similarity=0.610 Sum_probs=32.3
Q ss_pred CceEEEcCCCCCCcCC-ccccCcCcCcEEeccCCCCcccch-hhhcCCCCCEEecCCC
Q 048813 433 SLKVLNLSYSKLTNLP-VGISKVVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYT 488 (552)
Q Consensus 433 ~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~ 488 (552)
+|++|++++|+++.+| ..+..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555666666665554 345556666666666666655543 3556666666666655
No 39
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.47 E-value=2.9e-07 Score=86.90 Aligned_cols=44 Identities=34% Similarity=0.524 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|+||++++++|.+.+..+....+.|+|+.|+|||+|++++.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 68999999999999988778899999999999999999998875
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=1.2e-06 Score=75.92 Aligned_cols=96 Identities=25% Similarity=0.229 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCc
Q 048813 80 IGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLND 159 (552)
Q Consensus 80 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 159 (552)
+|++..++++...+.....+.+.|+|.+|+|||++|+++++.. ...-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL---FRPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh---hcCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4889999999999887667899999999999999999999986 2223456666655433322211111100
Q ss_pred ccccccHHHHHHHHHHHhccceEEEEEcccccc
Q 048813 160 TWKNRRIEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
............+..++|+||++..
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhh
Confidence 0011112223456789999999753
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.44 E-value=1.4e-07 Score=93.70 Aligned_cols=130 Identities=25% Similarity=0.285 Sum_probs=93.0
Q ss_pred CCcccceEEEeecCCcccC--CCCCCC---CccceeecccCCCcccCc----hhhcCC-CCceEEEcCCCCCC-----cC
Q 048813 383 RGWEKARRLSLMHNQITNL--SEIPTC---PHLLTCFLNRNGLQMIPN----DFFQFM-PSLKVLNLSYSKLT-----NL 447 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l--~~~~~~---~~L~~L~l~~~~l~~~~~----~~~~~l-~~L~~L~l~~~~l~-----~l 447 (552)
..+++++.|++++|.+... ..+..+ ++|+.|++.+|.+..... ..+..+ ++|+.|++++|.++ .+
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 3466899999999887631 122222 559999999997753111 123455 88999999999887 34
Q ss_pred CccccCcCcCcEEeccCCCCc-----ccchhhhcCCCCCEEecCCCcCcc-----ccchhhhcCCCCcceeeecCcC
Q 048813 448 PVGISKVVSLQHLDLSESDIE-----ELPGELKALVNLKCLDLEYTRNLI-----TIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 448 p~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~-----~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
+..+..+.+|++|++++|.+. .++..+..+++|++|++++|. +. .++.. +..+++|++|++.+|.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~-~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAET-LASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHH-hcccCCCCEEecCCCc
Confidence 556777789999999999887 355566677899999999885 43 23332 6678899999997654
No 42
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.44 E-value=6.5e-06 Score=81.19 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=64.0
Q ss_pred CcccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHH
Q 048813 77 PTVIGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIG 151 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 151 (552)
..|||+++.+++|...+.. +....+.++|++|+|||+||+++++.. ...+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchh-HHHHH
Confidence 3589999999999888862 345678899999999999999999876 2222 1122111111222 22233
Q ss_pred HHcCCCC----cccccccHHHHHHHHHHHhccceEEEEEccccccc
Q 048813 152 EKIGLLN----DTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQRV 193 (552)
Q Consensus 152 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 193 (552)
..++... ++.+..+ ......+...+.+.+..+|+++..+..
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~ 121 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR 121 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc
Confidence 3333221 0011111 122344666777777888888765543
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=6.7e-07 Score=96.36 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=80.4
Q ss_pred ccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC-cCCccccCcCcCcEEeccCCCCc-ccchhhhcCCCCCEEecC
Q 048813 409 HLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT-NLPVGISKVVSLQHLDLSESDIE-ELPGELKALVNLKCLDLE 486 (552)
Q Consensus 409 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 486 (552)
.+..|+|.+|.+....+..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|++. .+|+.+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888777444444778899999999999887 57888999999999999999887 688889999999999999
Q ss_pred CCcCccccchhhhcC-CCCcceeeecC
Q 048813 487 YTRNLITIPRQLISN-LSRLHVLRMFG 512 (552)
Q Consensus 487 ~~~~l~~lP~~~i~~-l~~L~~L~l~~ 512 (552)
+|.....+|.. ++. +.++..+++.+
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTD 524 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecC
Confidence 88766688876 544 34556666654
No 44
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.43 E-value=5.6e-07 Score=88.23 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=62.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc--CHHHHHHHHHHHcCCCCcccccccHH-----HH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL--RLENIQETIGEKIGLLNDTWKNRRIE-----QK 169 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~-----~~ 169 (552)
.-.-.+|+|++|+||||||+++|+.. . .++|+.++||.+.+.. ...++++.+...+-.... +..... ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~--d~~~~~~~~~a~~ 243 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF--DEPAERHVQVAEM 243 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC--CCCHHHHHHHHHH
Confidence 44578999999999999999999987 3 3489999999999887 778888888643221111 111111 11
Q ss_pred HHHHHHH--hccceEEEEEcccccc
Q 048813 170 ALDIFRI--LKEQKFVLLLDDLWQR 192 (552)
Q Consensus 170 ~~~l~~~--l~~k~~LlVlDdv~~~ 192 (552)
.....+. -.+++++|++|++...
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHHH
Confidence 1111122 2579999999998654
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=2.1e-07 Score=95.36 Aligned_cols=122 Identities=34% Similarity=0.472 Sum_probs=67.8
Q ss_pred cceEEEeecCCcccCC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCC
Q 048813 387 KARRLSLMHNQITNLS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSES 465 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 465 (552)
+++.|++.+|.+..++ .+..+++|+.|.+..|.+..+|.. ......|+.|++++|.+..+|..++.+.+|++|.+++|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 5666666666665553 455556666666666666555543 22455566666666666666655545555666666555
Q ss_pred CCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 466 DIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 466 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
.+...|..+.++.++..+.+.++. +..+|.. ++.+++|++|++.
T Consensus 220 ~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s 263 (394)
T COG4886 220 SIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLS 263 (394)
T ss_pred cceecchhhhhcccccccccCCce-eeeccch-hccccccceeccc
Confidence 555555555555555555555443 3333433 5556666666553
No 46
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=5.1e-06 Score=82.76 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=85.7
Q ss_pred CcccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHH
Q 048813 77 PTVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGE 152 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 152 (552)
..+.+||++++++...|.. +...-+.|+|..|.|||+.++.+.+.........+ +++|++-...+..+++..|++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3478999999999988753 33445999999999999999999998733222333 799999999999999999999
Q ss_pred HcCCCCcccccccHHHHHHHHHHHhc--cceEEEEEcccccc
Q 048813 153 KIGLLNDTWKNRRIEQKALDIFRILK--EQKFVLLLDDLWQR 192 (552)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 192 (552)
+++.. +. ......+....+.+.+. ++.+++|||+++..
T Consensus 96 ~~~~~-p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 96 KLGKV-PL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HcCCC-CC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 99622 21 23445556666666664 57899999999765
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=3.8e-07 Score=65.90 Aligned_cols=58 Identities=38% Similarity=0.553 Sum_probs=27.9
Q ss_pred ccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEEeccCCC
Q 048813 409 HLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLDLSESD 466 (552)
Q Consensus 409 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~ 466 (552)
+|+.|++.+|.+..+|...|..+++|++|++++|.++.+| ..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444455555444444444444555555555555544442 244445555555554443
No 48
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.34 E-value=4.1e-07 Score=90.33 Aligned_cols=82 Identities=28% Similarity=0.371 Sum_probs=39.6
Q ss_pred CccceeecccCCCcccC----chhhcCCCCceEEEcCCCCCC-----cCCccccCcCcCcEEeccCCCCc-----ccchh
Q 048813 408 PHLLTCFLNRNGLQMIP----NDFFQFMPSLKVLNLSYSKLT-----NLPVGISKVVSLQHLDLSESDIE-----ELPGE 473 (552)
Q Consensus 408 ~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~l~-----~lp~~ 473 (552)
++|+.|++.+|.+.... ...+..+++|+.|++++|.++ .++..+..+++|+.|++++|.+. .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45555666555544100 112334455566666555554 12333444455556666555543 22333
Q ss_pred hhcCCCCCEEecCCCc
Q 048813 474 LKALVNLKCLDLEYTR 489 (552)
Q Consensus 474 i~~L~~L~~L~l~~~~ 489 (552)
+..+++|++|++++|.
T Consensus 217 ~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 217 LASLKSLEVLNLGDNN 232 (319)
T ss_pred hcccCCCCEEecCCCc
Confidence 4445556666665553
No 49
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.29 E-value=6.8e-08 Score=92.54 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=67.5
Q ss_pred cceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEeccC-CCCcccchh-hhcCCCCCEEecC
Q 048813 410 LLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSE-SDIEELPGE-LKALVNLKCLDLE 486 (552)
Q Consensus 410 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~-~~l~~lp~~-i~~L~~L~~L~l~ 486 (552)
...+.|..|.++.+|+..|+.+++||.|||+.|+|+.+ |..|..|..|-.|-+-+ |+|+.+|.. ++.|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 44566677777777777777777777777777777765 66677676666665555 577777743 6666677776666
Q ss_pred CCcCccccchhhhcCCCCcceeeecC
Q 048813 487 YTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 487 ~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
-|. +..++.+.+..|++|..|.+++
T Consensus 149 an~-i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchhcccc
Confidence 653 5666666666666666666643
No 50
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.28 E-value=2.3e-06 Score=83.51 Aligned_cols=243 Identities=18% Similarity=0.219 Sum_probs=148.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCC-CeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNF-NYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
..+.+.++|.|||||||++-.+.+ . ...| +.+.++....-.+...+.-.+...++++... -+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~-----g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP-----GDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccccc-----chHHHHHHHH
Confidence 347899999999999999999988 3 4556 5677777777667776777777777765421 2233445667
Q ss_pred HhccceEEEEEccccccccc-----ccc-----------------------cccCC---CC-------------------
Q 048813 176 ILKEQKFVLLLDDLWQRVDL-----VKV-----------------------GVPLP---GP------------------- 205 (552)
Q Consensus 176 ~l~~k~~LlVlDdv~~~~~~-----~~~-----------------------~~~~~---~~------------------- 205 (552)
...++|.++|+||.-+..+- ..+ .-+.| ..
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 78889999999997542110 000 00000 00
Q ss_pred -CCCccchHHHHhhHhCCCchHHHHHHHHhccCCCHHHHHHHH----HHHhccCCCCCCCCcccchhhhhhccCCCCcch
Q 048813 206 -QSSRSLWFDGTAKECGGLPLALITIGRAMACKKTPEEWTYAI----EVLRTSSSQFPGLGNEVYPLLKFSYDSLPGDTI 280 (552)
Q Consensus 206 -~~~s~il~T~i~~~c~glPLai~~i~~~l~~~~~~~~w~~~~----~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~ 280 (552)
+....-.++.|.++.+|.|++|..+++..+. ....+-...+ ..+........--+......+.+||.-|.. ..
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we 241 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WE 241 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HH
Confidence 0011112228999999999999999988765 4444433322 223332111111223678899999999998 78
Q ss_pred hHHHhhhcCCCCCcccChHHHHHHHHHcCCcccccchhhhhhHHHHHHHHHHhccceec---CCCcEEEchhHHHHHHHH
Q 048813 281 RSCLLYCCLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYYILGILLHACLLEEG---GDGEVKMHDVVRDMALWI 357 (552)
Q Consensus 281 k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~~~~~~~ 357 (552)
+.-|..++.|...+... ...|.+-|-... .........+..++++++.... ..-.|+.-+-.+.|+...
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88999999998877654 233444433211 1233444456778888886542 233444455566666544
Q ss_pred H
Q 048813 358 A 358 (552)
Q Consensus 358 ~ 358 (552)
-
T Consensus 314 L 314 (414)
T COG3903 314 L 314 (414)
T ss_pred H
Confidence 3
No 51
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.28 E-value=7.8e-06 Score=87.16 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=78.9
Q ss_pred CCcccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcc--cCCCC--eEEEEEECCccCHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLES--TTNFN--YVIWVVVSKDLRLENI 146 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~~ 146 (552)
+..+.|||+++++|...|.. +...++.|+|++|.|||++++.|.+..... ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45588999999999988863 233578899999999999999998775211 11222 3577877777778888
Q ss_pred HHHHHHHcCCCCcccccccHHHHHHHHHHHhc---cceEEEEEcccccc
Q 048813 147 QETIGEKIGLLNDTWKNRRIEQKALDIFRILK---EQKFVLLLDDLWQR 192 (552)
Q Consensus 147 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~ 192 (552)
+..|.+++....+. ......+....+...+. ....+||||+++..
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 99999888433322 22233344445555442 22458999999754
No 52
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.27 E-value=3e-06 Score=83.60 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=63.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc--cCHHHHHHHHHHHcCCCCcccccc---cH-HHH
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD--LRLENIQETIGEKIGLLNDTWKNR---RI-EQK 169 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~---~~-~~~ 169 (552)
+.-..++|+|.+|+|||||++.+++.. . .++|+..+|+.+.+. .++.++++.+...+-...-+.... .. ...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 344679999999999999999999987 2 347999999998865 789999999954432221110111 11 111
Q ss_pred HHHHHHH-hccceEEEEEcccccc
Q 048813 170 ALDIFRI-LKEQKFVLLLDDLWQR 192 (552)
Q Consensus 170 ~~~l~~~-l~~k~~LlVlDdv~~~ 192 (552)
....... -.+++++|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 2222222 3578999999998654
No 53
>PF05729 NACHT: NACHT domain
Probab=98.27 E-value=1.4e-06 Score=77.48 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=53.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCC----CCeEEEEEECCccCHH---HHHHHHHHHcCCCCcccccccHHHHHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTN----FNYVIWVVVSKDLRLE---NIQETIGEKIGLLNDTWKNRRIEQKAL 171 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 171 (552)
|++.|+|.+|+||||+++.++.+.. .... +...+|+..+...... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 5899999999999999999988862 2222 4567777766544332 34444444443211 11111
Q ss_pred HHHH-HhccceEEEEEccccccc
Q 048813 172 DIFR-ILKEQKFVLLLDDLWQRV 193 (552)
Q Consensus 172 ~l~~-~l~~k~~LlVlDdv~~~~ 193 (552)
.+.. ..+.+++++|+|++++..
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~ 94 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELE 94 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcc
Confidence 1222 225789999999997654
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=3.1e-06 Score=91.22 Aligned_cols=80 Identities=31% Similarity=0.510 Sum_probs=71.5
Q ss_pred CceEEEcCCCCCCc-CCccccCcCcCcEEeccCCCCc-ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 433 SLKVLNLSYSKLTN-LPVGISKVVSLQHLDLSESDIE-ELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 433 ~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
.+..|+|++|.+.. +|..++.+.+|+.|+|++|.+. .+|..++.+++|+.|++++|.....+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999975 7999999999999999999887 89999999999999999999755578876 999999999999
Q ss_pred cCc
Q 048813 511 FGA 513 (552)
Q Consensus 511 ~~~ 513 (552)
.++
T Consensus 498 s~N 500 (623)
T PLN03150 498 NGN 500 (623)
T ss_pred cCC
Confidence 543
No 55
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.24 E-value=8.4e-06 Score=81.90 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=72.2
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCC
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGL 156 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 156 (552)
..+++.++.++.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.||.+++.++..++...+.-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP---- 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRP---- 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCC----
Confidence 34778999999999988754 578889999999999999999886 33456788999999988877665542211
Q ss_pred CCcccccccHHHHHHHHHHHh--ccceEEEEEccccccc
Q 048813 157 LNDTWKNRRIEQKALDIFRIL--KEQKFVLLLDDLWQRV 193 (552)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~ 193 (552)
........+ .-....+.+.. .++++.+|+|++....
T Consensus 248 ~~vgy~~~~-G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 248 NGVGFRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCCCeEecC-chHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 000000000 00111122222 2468999999996643
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=8.9e-07 Score=90.78 Aligned_cols=163 Identities=29% Similarity=0.413 Sum_probs=120.9
Q ss_pred cCCcccceEEEeecCCcccCCCCCCCC--ccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcE
Q 048813 382 VRGWEKARRLSLMHNQITNLSEIPTCP--HLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQH 459 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 459 (552)
......+..+.+.++.+..++...... +|+.|++..|.+..+|.. ...++.|+.|+++.|.+..+|...+.+.+|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 334467899999999999988766554 899999999999888643 67899999999999999999988778899999
Q ss_pred EeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccc----ccc-----ccCC
Q 048813 460 LDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASE----DSI-----LFGG 530 (552)
Q Consensus 460 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~----~~~-----~~~~ 530 (552)
|++++|.+..+|..+..+..|++|.+++|. +...|.. +.+++++..|.+ ..|.+...+. ... ...+
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l---~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLEL---SNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhccccccccc---CCceeeeccchhccccccceeccccc
Confidence 999999999999888778889999999885 4455554 778888777774 4454432111 000 1122
Q ss_pred CcchhHhhcCCCCCceEEEE
Q 048813 531 GELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 531 ~~~~~~~l~~L~~L~~L~l~ 550 (552)
....+..++.+.+|+.|+++
T Consensus 266 ~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 266 QISSISSLGSLTNLRELDLS 285 (394)
T ss_pred cccccccccccCccCEEecc
Confidence 22233336667777777654
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=3.9e-07 Score=88.57 Aligned_cols=105 Identities=20% Similarity=0.314 Sum_probs=49.1
Q ss_pred cccceEEEeecCCcccC---CCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC--ccccCcCcCcE
Q 048813 385 WEKARRLSLMHNQITNL---SEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP--VGISKVVSLQH 459 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~l---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~ 459 (552)
++.++.|.+++|.+..- .....|++|..|.+++|...-.......-+..|+.|||++|++..++ ..++.|+.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 34455555555554421 11234555555555555211111111223444555666666555444 34555555666
Q ss_pred EeccCCCCccc--chh-----hhcCCCCCEEecCCCc
Q 048813 460 LDLSESDIEEL--PGE-----LKALVNLKCLDLEYTR 489 (552)
Q Consensus 460 L~l~~~~l~~l--p~~-----i~~L~~L~~L~l~~~~ 489 (552)
|+++.|.+.++ |+. ...+++|++|++..|+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 66655555532 322 2344556666665553
No 58
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.1e-07 Score=87.80 Aligned_cols=160 Identities=21% Similarity=0.168 Sum_probs=98.7
Q ss_pred CcCCcccceEEEeecCCcccCCC----CCCCCccceeecccCCCcccCc-hhhcCCCCceEEEcCCCCCCc--CCccccC
Q 048813 381 DVRGWEKARRLSLMHNQITNLSE----IPTCPHLLTCFLNRNGLQMIPN-DFFQFMPSLKVLNLSYSKLTN--LPVGISK 453 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~ 453 (552)
....+++++.|+++.|-+..... ...+++|+.|+++.|.+..... ..-..+.+|+.|.|++|+++. +-.....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34456778888888777665422 3567788888888876543221 112346778888888887763 3333445
Q ss_pred cCcCcEEeccCC-CCcccchhhhcCCCCCEEecCCCcCccccch-hhhcCCCCcceeeecCcCCCCCccccccccccCCC
Q 048813 454 VVSLQHLDLSES-DIEELPGELKALVNLKCLDLEYTRNLITIPR-QLISNLSRLHVLRMFGASHNAFDEASEDSILFGGG 531 (552)
Q Consensus 454 l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 531 (552)
+++|..|.|..| .+...-.+..-++.|+.|||++|+ +..+|. ...+.++.|+.|++..|+...+-. -+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~---------~d 290 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAE---------PD 290 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcC---------CC
Confidence 677778888777 332222233446789999999886 556663 127788888888887665433321 12
Q ss_pred cchhHhhcCCCCCceEEEE
Q 048813 532 ELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 532 ~~~~~~l~~L~~L~~L~l~ 550 (552)
..+.+-...++.|+.|.++
T Consensus 291 ~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred ccchhhhcccccceeeecc
Confidence 3344445667778877765
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=5.1e-06 Score=55.01 Aligned_cols=39 Identities=41% Similarity=0.627 Sum_probs=21.1
Q ss_pred cCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccc
Q 048813 456 SLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIP 495 (552)
Q Consensus 456 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP 495 (552)
+|++|++++|+|+.+|..+++|++|++|++++|. +..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4555666666665555555566666666666553 44444
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.5e-06 Score=55.80 Aligned_cols=40 Identities=33% Similarity=0.577 Sum_probs=32.8
Q ss_pred CCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcccc
Q 048813 432 PSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELP 471 (552)
Q Consensus 432 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~lp 471 (552)
++|++|++++|+++.+|+.+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688999999999999877899999999999999888775
No 61
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.09 E-value=2.9e-05 Score=74.80 Aligned_cols=115 Identities=24% Similarity=0.277 Sum_probs=82.3
Q ss_pred CCcccchHHHHHHHHHHhccCC---CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEP---AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGE 152 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 152 (552)
.+.|.+|+.++..+..++.+.+ ...|-|+|-.|.|||.+.+++++.. . -..+|+++-+.+..+.+...|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHH
Confidence 5668899999999999997643 3456899999999999999998875 1 24589999999999999999999
Q ss_pred HcC-CCCccccc----ccHHHHHHHHHH--Hhc--cceEEEEEcccccccccc
Q 048813 153 KIG-LLNDTWKN----RRIEQKALDIFR--ILK--EQKFVLLLDDLWQRVDLV 196 (552)
Q Consensus 153 ~l~-~~~~~~~~----~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~ 196 (552)
+.+ .+.+.... .+..+....+.+ ... ++.++||||+++...+.+
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~ 131 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD 131 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc
Confidence 985 32221111 112222333333 222 358999999997765543
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.04 E-value=2.3e-07 Score=95.44 Aligned_cols=132 Identities=26% Similarity=0.353 Sum_probs=80.8
Q ss_pred cceeCCCcCCcccceEEEeecCCcccCCCCCC---------------------------------CCccceeecccCCCc
Q 048813 375 GLVEAPDVRGWEKARRLSLMHNQITNLSEIPT---------------------------------CPHLLTCFLNRNGLQ 421 (552)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~---------------------------------~~~L~~L~l~~~~l~ 421 (552)
+....-++-.+..+|+|.+.++.+....++.. ...|.+.++++|.+.
T Consensus 98 ~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 98 DPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 33334455677889999998887654222111 112233333344333
Q ss_pred ccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhc
Q 048813 422 MIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLIS 500 (552)
Q Consensus 422 ~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~ 500 (552)
.+... +.-++.|+.|||++|++...- .+..|.+|++|||+.|.+..+|.- ...+ +|+.|++++|. +.++-. +.
T Consensus 178 ~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie 251 (1096)
T KOG1859|consen 178 LMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IE 251 (1096)
T ss_pred hHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HH
Confidence 33222 445667778888888777765 667777888888888877777742 2222 37778887774 666664 77
Q ss_pred CCCCcceeeecC
Q 048813 501 NLSRLHVLRMFG 512 (552)
Q Consensus 501 ~l~~L~~L~l~~ 512 (552)
+|.+|+.|++.+
T Consensus 252 ~LksL~~LDlsy 263 (1096)
T KOG1859|consen 252 NLKSLYGLDLSY 263 (1096)
T ss_pred hhhhhhccchhH
Confidence 778888877743
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.04 E-value=7.8e-06 Score=79.32 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=33.3
Q ss_pred ccchHHHH---HHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQL---EQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+||.+..+ .-|.+.+..+.+.-..+||++|+||||||+.++...
T Consensus 26 ~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred hcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence 55554443 233455567888889999999999999999999876
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=6.1e-07 Score=73.51 Aligned_cols=107 Identities=21% Similarity=0.346 Sum_probs=86.9
Q ss_pred EEEeecCCcccCCC----CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCC
Q 048813 390 RLSLMHNQITNLSE----IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSES 465 (552)
Q Consensus 390 ~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 465 (552)
.++++++.+-.+++ +.....|....+++|.++++|..+..+++.+..|++++|.++.+|..+-.++.|+.|+++.|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 45556665543332 34556678889999999999998888888899999999999999999999999999999999
Q ss_pred CCcccchhhhcCCCCCEEecCCCcCccccchh
Q 048813 466 DIEELPGELKALVNLKCLDLEYTRNLITIPRQ 497 (552)
Q Consensus 466 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~ 497 (552)
.+..+|.-+..|.+|-.|+..+|. ...+|-.
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 999999988889999999988774 6677754
No 65
>PF13173 AAA_14: AAA domain
Probab=97.99 E-value=5.6e-06 Score=69.99 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILK 178 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 178 (552)
+++.|.|+-|+||||++++++.+. . ....+++++.......... ..+ ....+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhhc
Confidence 689999999999999999999876 2 3456677766654221100 000 1222333333
Q ss_pred cceEEEEEcccccccccccccccCCCCCCCccchHH
Q 048813 179 EQKFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD 214 (552)
Q Consensus 179 ~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T 214 (552)
.++.++++|++....+|......+.+..+..++++|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~t 95 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILT 95 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEE
Confidence 477899999998887776654444444445666665
No 66
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.94 E-value=9.4e-07 Score=84.90 Aligned_cols=124 Identities=27% Similarity=0.340 Sum_probs=103.7
Q ss_pred cceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCC-CCCCcCCc-cccCcCcCcEEec
Q 048813 387 KARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSY-SKLTNLPV-GISKVVSLQHLDL 462 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~l 462 (552)
....|.+..|.++.+|. |+.+++||.|++++|.++.+.++.|.++..|-.|-+.+ |+|+.+|. .|+.|..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 56678888999999874 78899999999999999988888888999888887777 79999985 6788999999988
Q ss_pred cCCCCcccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 463 SESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 463 ~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
.-|.+.-++ +.+..|++|..|.+..| .+..++.+.+..+.+++++.+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhh
Confidence 888887665 45888999999999888 4888888668888888888774
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=97.90 E-value=0.00034 Score=73.32 Aligned_cols=46 Identities=33% Similarity=0.528 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++++.+++.. ...+.+.|+|++|+||||+|+++++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3489999999999998863 226789999999999999999999976
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.86 E-value=2.7e-05 Score=79.91 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=39.4
Q ss_pred CcccchHHHHHH---HHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQ---VWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||++..+.. +.+.+..+....+.|+|++|+||||+|+.+++..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 348899988777 8888877777788999999999999999998875
No 69
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.85 E-value=4.5e-05 Score=72.85 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=56.3
Q ss_pred ccchHHHHHH---HHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcC
Q 048813 79 VIGLQSQLEQ---VWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIG 155 (552)
Q Consensus 79 ~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 155 (552)
.||.+..+.+ |.+++.++....+.+||++|+||||||+.+.... +.+- ..||..|-...-..-.+.|+++-.
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred hcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHHH
Confidence 4565544433 4455566788899999999999999999998875 2221 455665543222222222322110
Q ss_pred CCCcccccccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 156 LLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
=...+..+|..|.+|.|..
T Consensus 215 -----------------~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 215 -----------------NEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred -----------------HHHhhhcceeEEEeHHhhh
Confidence 0123567889999999864
No 70
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=2.9e-05 Score=68.28 Aligned_cols=102 Identities=27% Similarity=0.412 Sum_probs=81.4
Q ss_pred cceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC--ccccCcCcCcEEeccC
Q 048813 387 KARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP--VGISKVVSLQHLDLSE 464 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~ 464 (552)
....++++.|.+..++.++.++.|.+|.+..|.+..+.+..-..+++|..|.|.+|++.++- ..+-.++.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 45568888888888888888899999999999888888877777888999999999887763 3455677889998888
Q ss_pred CCCcccch----hhhcCCCCCEEecCCC
Q 048813 465 SDIEELPG----ELKALVNLKCLDLEYT 488 (552)
Q Consensus 465 ~~l~~lp~----~i~~L~~L~~L~l~~~ 488 (552)
|.++..+. -+.++++|++||.+.-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 88776653 2678888999988754
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=4.3e-06 Score=86.07 Aligned_cols=105 Identities=26% Similarity=0.368 Sum_probs=84.0
Q ss_pred cCCcccceEEEeecCCcccCCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEE
Q 048813 382 VRGWEKARRLSLMHNQITNLSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHL 460 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 460 (552)
...+.++..+++..|.+..+.. +..+.+|+.|++++|.+..+.. +..+..|+.|++.+|.++.++ .+..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 5566788888888888888877 7888888889998888887765 556777888888888888876 45558888888
Q ss_pred eccCCCCcccchh-hhcCCCCCEEecCCCc
Q 048813 461 DLSESDIEELPGE-LKALVNLKCLDLEYTR 489 (552)
Q Consensus 461 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 489 (552)
++++|.+..++.. ...+.+|+.+.+.+|.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 8888888877653 4677888888888774
No 72
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=1.9e-05 Score=69.95 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEE
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIW 134 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~w 134 (552)
.-|.|+|++|+||||||+.+++......-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987333356777776
No 73
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.71 E-value=0.00043 Score=65.88 Aligned_cols=113 Identities=16% Similarity=0.221 Sum_probs=76.0
Q ss_pred CcccchH---HHHHHHHHHhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCC---CCeEEEEEECCccCHHHHH
Q 048813 77 PTVIGLQ---SQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTN---FNYVIWVVVSKDLRLENIQ 147 (552)
Q Consensus 77 ~~~vGr~---~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~ 147 (552)
+..||-. +.++++..++.. ....-+.|+|-+|.|||++++.+.+.+...... --.++.|.+-..++...++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4455643 344555555543 345679999999999999999998876221111 1257777888889999999
Q ss_pred HHHHHHcCCCCcccccccHHHHHHHHHHHhcc-ceEEEEEccccc
Q 048813 148 ETIGEKIGLLNDTWKNRRIEQKALDIFRILKE-QKFVLLLDDLWQ 191 (552)
Q Consensus 148 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~ 191 (552)
..|+.+++.+... ............+.++. +--+||+|++.+
T Consensus 114 ~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 114 SAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 9999999987643 23334444444455544 334889999865
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=1.1e-05 Score=82.93 Aligned_cols=139 Identities=26% Similarity=0.348 Sum_probs=92.9
Q ss_pred eEEEcCCcceeCCC-cCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 368 FLVYAGVGLVEAPD-VRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 368 ~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
.+...+..+..+.. ...+.+++.|++++|.+..+..+..++.|+.|++.+|.+..+.. +..+..|+.+++++|.+..
T Consensus 99 ~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 99 ALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhh
Confidence 34444555555566 66778888888888888888888888888888888888877665 4557888888888888887
Q ss_pred CCcc-ccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCC--cceeeecC
Q 048813 447 LPVG-ISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSR--LHVLRMFG 512 (552)
Q Consensus 447 lp~~-~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~--L~~L~l~~ 512 (552)
+... ...+..|+.+.+.+|.+..+. .+..+.++..+++..|. +..+-. +..+.. |+.+++.+
T Consensus 177 ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 177 IENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred hhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhccc
Confidence 7643 467778888888888776653 33344555555666553 333322 233333 56666633
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00012 Score=72.96 Aligned_cols=112 Identities=23% Similarity=0.410 Sum_probs=71.1
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccC-CCcccCchhhcCCCCceEEEcCCC-CCCcCCccccCcCcCcEEecc
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRN-GLQMIPNDFFQFMPSLKVLNLSYS-KLTNLPVGISKVVSLQHLDLS 463 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~ 463 (552)
.++++|++++|.+..+|.++ .+|+.|.+.++ .+..+|..+ ..+|++|++++| ++..+|++ |+.|++.
T Consensus 52 ~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEEeC
Confidence 46778888888777776432 35888888764 555566532 357888888887 77777754 4444554
Q ss_pred CC---CCcccchhhhcC------------------CCCCEEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 464 ES---DIEELPGELKAL------------------VNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 464 ~~---~l~~lp~~i~~L------------------~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
++ .+..+|+++..| .+|++|++++|.. ..+|+. + -.+|++|.+..
T Consensus 121 ~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~-i~LP~~-L--P~SLk~L~ls~ 186 (426)
T PRK15386 121 GSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN-IILPEK-L--PESLQSITLHI 186 (426)
T ss_pred CCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc-ccCccc-c--cccCcEEEecc
Confidence 43 355677665544 2677888887763 345543 2 24677777644
No 76
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.70 E-value=5.6e-05 Score=68.53 Aligned_cols=47 Identities=28% Similarity=0.300 Sum_probs=35.3
Q ss_pred CCcccchHHHHHHHHHHhc-----cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLV-----EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
-..|||.+..++++.-++. .+....+-+||++|+||||||..+++..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 3558999999999866553 2456789999999999999999999987
No 77
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.70 E-value=0.00016 Score=67.89 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 82 LQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 82 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
.+..++.+.+++.......+.|+|.+|+|||+||+++++.. .......++++++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~ 75 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLA 75 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHH
Confidence 55677788777655666799999999999999999999876 2233345566544
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=8.3e-05 Score=74.01 Aligned_cols=101 Identities=20% Similarity=0.388 Sum_probs=73.9
Q ss_pred CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCC-CCCcCCccccCcCcCcEEeccCC-CCcccchhhhcCCCCC
Q 048813 404 IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYS-KLTNLPVGISKVVSLQHLDLSES-DIEELPGELKALVNLK 481 (552)
Q Consensus 404 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~ 481 (552)
+..|.++..|++.+|.+..+|. -..+|+.|.+++| +++.+|..+. .+|++|++++| .+..+|++ |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cc
Confidence 3456889999999999888883 2457999999986 7788887663 58999999998 88888865 44
Q ss_pred EEecCCC--cCccccchhhhcCC------------------CCcceeeecCcCCCC
Q 048813 482 CLDLEYT--RNLITIPRQLISNL------------------SRLHVLRMFGASHNA 517 (552)
Q Consensus 482 ~L~l~~~--~~l~~lP~~~i~~l------------------~~L~~L~l~~~~~~~ 517 (552)
+|+++.+ ..+..+|++ +..| ++|++|.+.+|....
T Consensus 116 ~L~L~~n~~~~L~~LPss-Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNG-LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred eEEeCCCCCcccccCcch-HhheeccccccccccccccccCCcccEEEecCCCccc
Confidence 4455433 346777765 4443 368888888776543
No 79
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.69 E-value=0.00064 Score=73.03 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=40.7
Q ss_pred CCcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.++|++..+..+.+.+.......+.|+|.+|+||||+|+.+++..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 35588999999999888876666789999999999999999998765
No 80
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=3e-05 Score=83.63 Aligned_cols=128 Identities=21% Similarity=0.293 Sum_probs=87.8
Q ss_pred cceEEEeecCCcccC---CC-CCCCCccceeecccCCCcccC-chhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEe
Q 048813 387 KARRLSLMHNQITNL---SE-IPTCPHLLTCFLNRNGLQMIP-NDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLD 461 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l---~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 461 (552)
++++|+++|...-.- .. ...+|+|++|.+.+-.+..-. ...+..+++|+.||+++++++.+ .++++|++|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 788888877542210 01 245788999988886553211 23367899999999999999999 6899999999999
Q ss_pred ccCCCCcccc--hhhhcCCCCCEEecCCCcCcccc--chhhh---cCCCCcceeeecCcCCCCC
Q 048813 462 LSESDIEELP--GELKALVNLKCLDLEYTRNLITI--PRQLI---SNLSRLHVLRMFGASHNAF 518 (552)
Q Consensus 462 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~l--P~~~i---~~l~~L~~L~l~~~~~~~~ 518 (552)
+++-.+..-+ ..+.+|++|++||+|.......- ....+ ..|++|+.|+- +.+.+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc---SgTdi 262 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC---SGTDI 262 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec---CCcch
Confidence 9887776543 46889999999999977533221 22111 24666666665 55444
No 81
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.66 E-value=4e-05 Score=70.99 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEE
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVV 137 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~ 137 (552)
-++|+|..|+|||||...+.... ...|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 67899999999999999998876 678888877754
No 82
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.63 E-value=0.00017 Score=61.62 Aligned_cols=89 Identities=20% Similarity=0.144 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILK 178 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 178 (552)
..+.|+|.+|+||||+|+.++... ......++++..+........... ..... ... ...........+....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVG--GKK-ASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhh--ccC-CCCCHHHHHHHHHHHHH
Confidence 578999999999999999999886 232234566654443322211111 00010 000 11222223334444444
Q ss_pred cc-eEEEEEcccccccc
Q 048813 179 EQ-KFVLLLDDLWQRVD 194 (552)
Q Consensus 179 ~k-~~LlVlDdv~~~~~ 194 (552)
.. ..++++|++.....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 43 38999999976543
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=1.1e-05 Score=66.32 Aligned_cols=110 Identities=26% Similarity=0.351 Sum_probs=83.4
Q ss_pred cceeecccCCCcccCch--hhcCCCCceEEEcCCCCCCcCCccccCc-CcCcEEeccCCCCcccchhhhcCCCCCEEecC
Q 048813 410 LLTCFLNRNGLQMIPND--FFQFMPSLKVLNLSYSKLTNLPVGISKV-VSLQHLDLSESDIEELPGELKALVNLKCLDLE 486 (552)
Q Consensus 410 L~~L~l~~~~l~~~~~~--~~~~l~~L~~L~l~~~~l~~lp~~~~~l-~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 486 (552)
+..++++.|.+-.++.. .+.+...|...+|++|.++.+|+.+... +.+.+|++.+|.++.+|.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 45566667755444332 1445677889999999999999887654 48999999999999999999999999999999
Q ss_pred CCcCccccchhhhcCCCCcceeeecCcCCCCCcccccc
Q 048813 487 YTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASED 524 (552)
Q Consensus 487 ~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 524 (552)
.|. +...|.- +..|.+|-.|+. ..|..-+++-+
T Consensus 109 ~N~-l~~~p~v-i~~L~~l~~Lds---~~na~~eid~d 141 (177)
T KOG4579|consen 109 FNP-LNAEPRV-IAPLIKLDMLDS---PENARAEIDVD 141 (177)
T ss_pred cCc-cccchHH-HHHHHhHHHhcC---CCCccccCcHH
Confidence 996 7888875 666777777776 44444444433
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.60 E-value=0.00015 Score=78.68 Aligned_cols=46 Identities=35% Similarity=0.465 Sum_probs=38.1
Q ss_pred CcccchHHHHH---HHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLE---QVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|+|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34889998885 46666767777788999999999999999999875
No 85
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=4.6e-05 Score=82.21 Aligned_cols=133 Identities=22% Similarity=0.237 Sum_probs=89.4
Q ss_pred CccceeecccCCC--cccCchhhcCCCCceEEEcCCCCCCc--CCccccCcCcCcEEeccCCCCcccchhhhcCCCCCEE
Q 048813 408 PHLLTCFLNRNGL--QMIPNDFFQFMPSLKVLNLSYSKLTN--LPVGISKVVSLQHLDLSESDIEELPGELKALVNLKCL 483 (552)
Q Consensus 408 ~~L~~L~l~~~~l--~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 483 (552)
.+|+.|+++|... ...|..+...+++|+.|.++|-.+.. +-.-..++++|..||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4688888888632 23444556679999999999875532 344556788999999999999999 789999999999
Q ss_pred ecCCCcCccccch-hhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCCceEEEEE
Q 048813 484 DLEYTRNLITIPR-QLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYLEVISFTL 551 (552)
Q Consensus 484 ~l~~~~~l~~lP~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 551 (552)
.+++-. +..-+. ..+-+|++|+.|+++.-..+....+ ....++--.-||+||.|+.+.
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~i---------i~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKI---------IEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeeccccccccchHH---------HHHHHHhcccCccccEEecCC
Confidence 997543 333221 1277899999999954332221100 001122223488999998764
No 86
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=0.00026 Score=63.06 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEE
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIW 134 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~w 134 (552)
.|.|+|++|+||||||+.+........-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998765212224455555
No 87
>PRK06893 DNA replication initiation factor; Validated
Probab=97.56 E-value=0.00034 Score=65.58 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
..+.+.|+|.+|+|||+||+++++.. ......+.|+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY---LLNQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEeeHH
Confidence 34578999999999999999999986 2233455676653
No 88
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.0011 Score=61.78 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=40.2
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEE
Q 048813 79 VIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIW 134 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~w 134 (552)
+.++......+..++.+. .+|.+.|..|.|||+||.+++.+. -..+.|+.++-
T Consensus 57 i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI 109 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIV 109 (262)
T ss_pred ccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEE
Confidence 668888888888888764 599999999999999999988863 21234554443
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.54 E-value=0.00031 Score=78.41 Aligned_cols=45 Identities=29% Similarity=0.401 Sum_probs=40.1
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++||+++++++.+.|......-+.++|.+|+|||++|+.++...
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999987665667899999999999999998886
No 90
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=0.00023 Score=60.30 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999986
No 91
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.50 E-value=0.0013 Score=73.13 Aligned_cols=44 Identities=20% Similarity=0.426 Sum_probs=39.6
Q ss_pred ccchHHHHHHHHHHhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++||+.+++.|...+.+ +...++.+.|..|||||+|+++|....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i 48 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPI 48 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHH
Confidence 68999999999998864 566799999999999999999998876
No 92
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.48 E-value=3e-06 Score=87.48 Aligned_cols=122 Identities=30% Similarity=0.412 Sum_probs=88.0
Q ss_pred CcccceEEEeecCCcccCCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcCcEEe
Q 048813 384 GWEKARRLSLMHNQITNLSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQHLD 461 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~ 461 (552)
.|.++...++++|.+..+.. +.-++.++.|+|+.|.+.+.. ++..++.|+.|||++|.+..+|.- ...+ +|+.|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 45677778888888776643 344567888889888887765 366788888999999988887742 2233 488889
Q ss_pred ccCCCCcccchhhhcCCCCCEEecCCCcCccc---cchhhhcCCCCcceeeecC
Q 048813 462 LSESDIEELPGELKALVNLKCLDLEYTRNLIT---IPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 462 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~---lP~~~i~~l~~L~~L~l~~ 512 (552)
+++|-+++|- .+.+|++|+.||+++|- +.. +-+ ++.|..|+.|.+.|
T Consensus 239 lrnN~l~tL~-gie~LksL~~LDlsyNl-l~~hseL~p--LwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 239 LRNNALTTLR-GIENLKSLYGLDLSYNL-LSEHSELEP--LWSLSSLIVLWLEG 288 (1096)
T ss_pred ecccHHHhhh-hHHhhhhhhccchhHhh-hhcchhhhH--HHHHHHHHHHhhcC
Confidence 9888888874 68888899999998884 332 222 56667777777755
No 93
>PLN03025 replication factor C subunit; Provisional
Probab=97.47 E-value=0.00068 Score=67.13 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++.|.+++..+....+.++|++|+||||+|+.+++..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999988887776778899999999999999999875
No 94
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00015 Score=63.93 Aligned_cols=124 Identities=21% Similarity=0.272 Sum_probs=90.3
Q ss_pred ceEEEeecCCcccCCCCCC-CCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcccc-CcCcCcEEeccCC
Q 048813 388 ARRLSLMHNQITNLSEIPT-CPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGIS-KVVSLQHLDLSES 465 (552)
Q Consensus 388 l~~L~l~~~~l~~l~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~ 465 (552)
-+.+++.+..+......+. ..+...+++.+|.+..++. |+.++.|..|.+.+|.|+.+-+.+. .+++|+.|.|.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3445555555444333222 2356788999998877765 7889999999999999999855554 4567999999999
Q ss_pred CCcccc--hhhhcCCCCCEEecCCCcCccccch---hhhcCCCCcceeeecCcC
Q 048813 466 DIEELP--GELKALVNLKCLDLEYTRNLITIPR---QLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 466 ~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~---~~i~~l~~L~~L~l~~~~ 514 (552)
+|.++- ..+..+++|++|.+-+|. +...+. -++..+++|++|+..+..
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 998774 246778999999998886 333321 247789999999987643
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.46 E-value=0.00053 Score=68.08 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=41.0
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|+++.++.+..++..+..+.+.|+|..|+||||+|+.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999999987766778999999999999999998875
No 96
>PRK08727 hypothetical protein; Validated
Probab=97.46 E-value=0.00062 Score=63.98 Aligned_cols=59 Identities=17% Similarity=0.114 Sum_probs=38.2
Q ss_pred CCccc-chHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEE
Q 048813 76 EPTVI-GLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVV 137 (552)
Q Consensus 76 ~~~~v-Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~ 137 (552)
...|+ |-...+..+...........+.|+|..|+|||.||+++++.. ......+.|+++
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~---~~~~~~~~y~~~ 77 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA---EQAGRSSAYLPL 77 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEeH
Confidence 33454 444445544444434444679999999999999999999876 223335566653
No 97
>PRK12377 putative replication protein; Provisional
Probab=97.45 E-value=0.0015 Score=61.57 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
....+.|+|.+|+|||.||.++++.. ......++++++. ++...+...... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l---~~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL---LAKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 34689999999999999999999987 2334445666543 344444433311 11111 12222
Q ss_pred hccceEEEEEccccc
Q 048813 177 LKEQKFVLLLDDLWQ 191 (552)
Q Consensus 177 l~~k~~LlVlDdv~~ 191 (552)
+ .+--|||+||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 3 3455999999843
No 98
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.00051 Score=67.83 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=45.4
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhhh---cccCCCCeEEEEE
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKFL---ESTTNFNYVIWVV 136 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~~f~~~~wv~ 136 (552)
..++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++..- ....|.|...|..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 3478999999999999987654 4668999999999999999988641 1234556655544
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.44 E-value=0.00056 Score=64.35 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=38.0
Q ss_pred ccchH-HHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 79 VIGLQ-SQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 79 ~vGr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
++|.. ..+..+.++......+.+.|+|+.|+|||+||+++++.. ......+.++.+.
T Consensus 25 ~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~~~~~v~y~~~~ 82 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL---SQRGRAVGYVPLD 82 (235)
T ss_pred ccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEEHH
Confidence 44633 344444444444455789999999999999999999876 2233455666553
No 100
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.43 E-value=0.00035 Score=77.00 Aligned_cols=45 Identities=27% Similarity=0.374 Sum_probs=40.1
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++||+++++++...|......-+.++|.+|+|||++|+.+++..
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999998887666677899999999999999999876
No 101
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0004 Score=74.02 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+.+..+++ ..+.++|..|+||||+|+.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987654 456799999999999999988875
No 102
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.41 E-value=0.0014 Score=64.73 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=65.3
Q ss_pred HHHHHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCe-EEEEEECCcc-CHHHHHHHHHHHcCCCCccccc
Q 048813 87 EQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNY-VIWVVVSKDL-RLENIQETIGEKIGLLNDTWKN 163 (552)
Q Consensus 87 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~ 163 (552)
.++++.+.. +.-.-+.|+|..|+|||||++.+++... .++-+. ++|+.+++.. ...++.+.+...+.....+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 345666553 4446779999999999999999988762 223343 4777777554 6788888888877653321111
Q ss_pred ---ccHHHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 164 ---RRIEQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 164 ---~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.........+.+++ ++++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11111222222222 578999999998543
No 103
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0007 Score=73.60 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHhccCCCeE-EEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGI-VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+.+..+++.- +.++|..|+||||+|+.+++..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 458999999999999998776654 5899999999999999999876
No 104
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.00095 Score=69.69 Aligned_cols=46 Identities=28% Similarity=0.273 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|.+.+..+... .+.++|++|+||||+|+.+++..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44889999999999998877654 56999999999999999998886
No 105
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.38 E-value=0.00058 Score=69.33 Aligned_cols=44 Identities=34% Similarity=0.459 Sum_probs=37.0
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|+++.++++.+.+.. ...+-|.++|++|+|||++|+++++..
T Consensus 133 i~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 133 IGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred hCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 67999999999887631 234568999999999999999999875
No 106
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.00064 Score=71.44 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=40.0
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+.+..+++. .+.++|..|+||||+|+.+++..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999877654 56889999999999999998876
No 107
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0016 Score=65.69 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=40.0
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+..+.+ ..+.++|+.|+||||+|+.+++..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 4588999999999999887654 457899999999999999998875
No 108
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.36 E-value=0.00082 Score=60.50 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=48.0
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR 142 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~ 142 (552)
.+||-|+-++.+.-...++.++-+.|.||+|+||||-+..+++.. -....=+.++=.++|....
T Consensus 28 dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERG 91 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccc
Confidence 489999999999888888999999999999999999998888876 1111224444444444433
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.35 E-value=0.00083 Score=74.80 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|||+.++.++...|......-+.++|.+|+||||+|+.++++.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999887766677899999999999999999876
No 110
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.0019 Score=64.26 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=78.3
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIG 151 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 151 (552)
+.+++||+.++..+.+++.. ...+.+.|.|-+|.|||.+...++.+...-... -.++++.+..-.....+...|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 45589999999999988763 456789999999999999999999886211111 2557787776556677777777
Q ss_pred HHc--CCCCcccccccHHHHHHHHHHHhccc--eEEEEEcccccc
Q 048813 152 EKI--GLLNDTWKNRRIEQKALDIFRILKEQ--KFVLLLDDLWQR 192 (552)
Q Consensus 152 ~~l--~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~ 192 (552)
..+ .... .....+....+.++..+. -+|+|+|.++..
T Consensus 228 ~~~~q~~~s----~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 228 SSLLQDLVS----PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHhcC----CchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 766 1111 112245556666666553 589999998754
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.35 E-value=0.0007 Score=75.62 Aligned_cols=44 Identities=25% Similarity=0.408 Sum_probs=39.9
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++||+.++.++...|......-+.++|.+|+|||++|+.++...
T Consensus 180 vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 180 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999987766677899999999999999999876
No 112
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0011 Score=68.64 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=39.6
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..+..|.+.+..+.. ..+.++|++|+||||+|+.+++..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999888887765 457899999999999999998875
No 113
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.00074 Score=71.18 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4489999999999999987654 577899999999999999998875
No 114
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.31 E-value=0.00065 Score=68.59 Aligned_cols=45 Identities=31% Similarity=0.447 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|+++.+++|.+.+.. ...+-+.++|++|+|||++|+++++..
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999887631 124568999999999999999999876
No 115
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.29 E-value=0.00086 Score=69.50 Aligned_cols=45 Identities=36% Similarity=0.497 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.++.++++.+.+.. ...+-+.++|++|+|||++|+++++..
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 377899999999887531 234568999999999999999999986
No 116
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.29 E-value=0.0011 Score=61.07 Aligned_cols=47 Identities=32% Similarity=0.488 Sum_probs=38.5
Q ss_pred CCcccchHHHHHHHHHH----hccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRC----LVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~----L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.|.+++.|.+- +...+..-+-+||..|.|||++++++.+.+
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 34589999999988653 334466788899999999999999999887
No 117
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.00046 Score=70.44 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=40.5
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..+..|..++..+.+. .+.++|+.|+||||+|+.+++..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45899999999999999887654 57999999999999999998876
No 118
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0016 Score=66.35 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|.+.+..+.+. .+.++|+.|+||||+|+.+++..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999999887665 48899999999999999998876
No 119
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.26 E-value=0.00024 Score=59.33 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 120
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.25 E-value=0.0036 Score=58.84 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=50.6
Q ss_pred HHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccc
Q 048813 85 QLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWK 162 (552)
Q Consensus 85 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 162 (552)
.+..+.+...+ .....+.++|.+|+|||+||.++++.. ......+++++ ..++...+..... . .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l---~~~g~~v~~it------~~~l~~~l~~~~~-~----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL---LLRGKSVLIIT------VADIMSAMKDTFS-N----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEE------HHHHHHHHHHHHh-h----c
Confidence 34444444432 234578999999999999999999987 23334556664 3445544443331 0 1
Q ss_pred cccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 163 NRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 163 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
..... .+.+.+. +.=+||+||+..
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 11111 2333344 344888899854
No 121
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.25 E-value=0.0017 Score=60.86 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=52.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHH----cCCCCcccccccHH---HH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEK----IGLLNDTWKNRRIE---QK 169 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~---~~ 169 (552)
.-.++.|+|.+|+|||++|.+++... ......++|++.. .++...+.+ ++.. +...-.-....+.. +.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 35699999999999999999988765 2345788999887 555444332 2221 00000000112222 22
Q ss_pred HHHHHHHhccceEEEEEcccc
Q 048813 170 ALDIFRILKEQKFVLLLDDLW 190 (552)
Q Consensus 170 ~~~l~~~l~~k~~LlVlDdv~ 190 (552)
...+.+.+..+--++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 333444444566789999873
No 122
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.22 E-value=0.0014 Score=59.64 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=52.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcccc-cccHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTWK-NRRIEQKALDIFR 175 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~l~~ 175 (552)
+++|.++|+.|+||||.+..++... . ..-..+..++..... ...+-++..++.++.+-.... ..+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~--~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-K--LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-H--HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-h--hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999988888776 2 225567777765432 445667888888886532211 2233333333233
Q ss_pred Hhccce-EEEEEccc
Q 048813 176 ILKEQK-FVLLLDDL 189 (552)
Q Consensus 176 ~l~~k~-~LlVlDdv 189 (552)
..+.++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 333333 36666754
No 123
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.002 Score=66.56 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
..+||.+..++.+.+.+..+... .+-++|+.|+||||+|+.++..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 45899999999999988877655 7899999999999999999874
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.18 E-value=0.0011 Score=74.42 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|||+.++.++...|......-+.++|.+|+|||++|+.++.+.
T Consensus 175 ~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 175 VIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999987666677799999999999999998875
No 125
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.002 Score=68.56 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=40.0
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..+..|.+.+..+++ ..+.++|..|+||||+|+.+++..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999999999999987764 467999999999999999998864
No 126
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.17 E-value=0.00053 Score=67.30 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=39.7
Q ss_pred cccchHHHHHHHHHHhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|.++.++++++.+.. ...++++++|++|+||||||+++++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999998853 245789999999999999999998886
No 127
>PRK06696 uridine kinase; Validated
Probab=97.17 E-value=0.0012 Score=61.56 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 81 GLQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|++.+++|.+.+.. +...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 477888888887753 467799999999999999999999876
No 128
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.16 E-value=0.0045 Score=58.00 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCC------CeEEEEEECCccCHHHHHHHHHHHcCCCCc-------cccc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNF------NYVIWVVVSKDLRLENIQETIGEKIGLLND-------TWKN 163 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~ 163 (552)
.-.++.|+|.+|+|||+||.+++... .... ..++|++....++...+. .+++..+.... -...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 35699999999999999999987664 2223 578999988776655443 33333221110 0112
Q ss_pred ccHHHHHHHHHHHhc----cceEEEEEccccc
Q 048813 164 RRIEQKALDIFRILK----EQKFVLLLDDLWQ 191 (552)
Q Consensus 164 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~~ 191 (552)
.+.++....+.+... .+--|+|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 334455444444432 3445899999844
No 129
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.14 E-value=0.0018 Score=59.82 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQE 148 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 148 (552)
.-.++-|+|.+|+|||++|.+++... ......++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 35799999999999999999987765 23457899999876 55555444
No 130
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.12 E-value=0.0015 Score=66.25 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=36.8
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+++++..
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999876531 245678999999999999999999875
No 131
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11 E-value=0.0037 Score=58.95 Aligned_cols=93 Identities=18% Similarity=0.238 Sum_probs=54.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccC----CCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc-------ccccc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTT----NFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRR 165 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 165 (552)
.-.++.|+|.+|+|||++|.+++-.. .... ....++|++....++...+.+ +++..+..... ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 44699999999999999999987543 1111 136899999888776554433 33333321110 01112
Q ss_pred H---HHHHHHHHHHhc-c-ceEEEEEccccc
Q 048813 166 I---EQKALDIFRILK-E-QKFVLLLDDLWQ 191 (552)
Q Consensus 166 ~---~~~~~~l~~~l~-~-k~~LlVlDdv~~ 191 (552)
. .+....+.+.+. . +--++|+|.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 2 223344444443 3 567899998843
No 132
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.11 E-value=0.0021 Score=60.90 Aligned_cols=93 Identities=20% Similarity=0.367 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCC-CeEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-----cccccH---
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNF-NYVIWVVVSKDL-RLENIQETIGEKIGLLNDT-----WKNRRI--- 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~--- 166 (552)
.-.-++|.|..|+||||||+.+++.. ..+| +.++++-+++.. ...++.+.+...=.+.... .+....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 44678999999999999999999987 3344 456677777654 4556666665432111100 011111
Q ss_pred --HHHHHHHHHHh--c-cceEEEEEcccccc
Q 048813 167 --EQKALDIFRIL--K-EQKFVLLLDDLWQR 192 (552)
Q Consensus 167 --~~~~~~l~~~l--~-~k~~LlVlDdv~~~ 192 (552)
......+-+++ + ++.+|+++||+-..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11222344555 3 78999999998543
No 133
>PRK08116 hypothetical protein; Validated
Probab=97.11 E-value=0.0019 Score=61.85 Aligned_cols=74 Identities=28% Similarity=0.308 Sum_probs=45.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILK 178 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 178 (552)
..+.++|..|+|||.||.++++.. ......+++++ ..+++..+........ ..... .+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l---~~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~~~----~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL---IEKGVPVIFVN------FPQLLNRIKSTYKSSG----KEDEN----EIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEE------HHHHHHHHHHHHhccc----cccHH----HHHHHhc
Confidence 458999999999999999999987 22234556664 3445555554443111 11111 2233344
Q ss_pred cceEEEEEcccc
Q 048813 179 EQKFVLLLDDLW 190 (552)
Q Consensus 179 ~k~~LlVlDdv~ 190 (552)
+-. ||||||+.
T Consensus 178 ~~d-lLviDDlg 188 (268)
T PRK08116 178 NAD-LLILDDLG 188 (268)
T ss_pred CCC-EEEEeccc
Confidence 444 89999984
No 134
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.00087 Score=62.37 Aligned_cols=46 Identities=35% Similarity=0.396 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhc-----cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLV-----EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|||.++.++++.-.+. .+..-.|-++|++|.||||||.-+++..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 348999999999976664 3567789999999999999999999987
No 135
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.10 E-value=0.004 Score=57.97 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR 142 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~ 142 (552)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 45799999999999999999988765 23445778887665543
No 136
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0019 Score=66.21 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=61.2
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH
Q 048813 77 PTVIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE 144 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 144 (552)
..+=|.+..+.++.+++.. ...+=|.++|++|+|||.||+++++.. .-.| +.++-+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPF-----LSISAP---- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCce-----Eeecch----
Confidence 3477899999999887642 245678999999999999999999986 2333 222221
Q ss_pred HHHHHHHHHcCCCCcccccccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 145 NIQETIGEKIGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 145 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
+|...+ ...+++...+...+.-..-.+++++|+++-
T Consensus 258 ----eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222222 223344444445556677899999999864
No 137
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0026 Score=66.72 Aligned_cols=46 Identities=28% Similarity=0.298 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|...+..++. ..+.++|+.|+||||+|+.+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999987654 457889999999999999998865
No 138
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.07 E-value=0.0055 Score=58.30 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=56.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcc---cCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc-------cccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLES---TTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 166 (552)
...+.=|+|.+|+|||.||.+++-..... .+.-..++||+....+....+.+ |+++.+..... ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-HhhccccccchhhhceeeeecCCH
Confidence 34589999999999999998776443111 12235799999998888877654 56655433211 012233
Q ss_pred HHHH---HHHHHHhc-cceEEEEEccccc
Q 048813 167 EQKA---LDIFRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 167 ~~~~---~~l~~~l~-~k~~LlVlDdv~~ 191 (552)
+++. ..+...+. .+--|||+|.+-.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHH
Confidence 3333 33333343 3445999999843
No 139
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=4.7e-05 Score=70.86 Aligned_cols=130 Identities=23% Similarity=0.193 Sum_probs=62.2
Q ss_pred CcccceEEEeecCCcccC--CCCCCCCccceeecccC-CCcccC-chhhcCCCCceEEEcCCCCCCc--C---CccccCc
Q 048813 384 GWEKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRN-GLQMIP-NDFFQFMPSLKVLNLSYSKLTN--L---PVGISKV 454 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l--~~~~~~~~L~~L~l~~~-~l~~~~-~~~~~~l~~L~~L~l~~~~l~~--l---p~~~~~l 454 (552)
.+.+++.|++.++.+... ..+..-.+|+.|+++.+ ++.... .-.+..++.|..|++++|.+.. + -..++
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his-- 285 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS-- 285 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--
Confidence 345666666666665542 12333456777777765 343211 1235667777888888775432 1 11222
Q ss_pred CcCcEEeccCCC--Cc--ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCC
Q 048813 455 VSLQHLDLSESD--IE--ELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASH 515 (552)
Q Consensus 455 ~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~ 515 (552)
.+|..|+++|+. +. .+.--...+++|.+|||+.|..+..=--..+.+++.|++|.+..|..
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 244445555541 11 11111234455555665555433321111244555555555555543
No 140
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.05 E-value=0.00088 Score=62.99 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=49.6
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCC-eEEEEEECCcc
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFN-YVIWVVVSKDL 141 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~-~~~wv~~s~~~ 141 (552)
..++|.+..++-+.+.+..........+|++|.|||+-|.+++... -..+.|. .++-.++|...
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDER 100 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccc
Confidence 4488999999999999988778899999999999999999988876 3334554 34444555443
No 141
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.04 E-value=0.0019 Score=62.94 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc---cccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT---WKNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 173 (552)
.-+++-|+|.+|+||||||.++.... ...-..++||+....++.. .+++++...+. ......++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999887765 3345677899877665543 35555543221 1223445555555
Q ss_pred HHHhc-cceEEEEEccccc
Q 048813 174 FRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~~ 191 (552)
....+ +.--++|+|.|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 44443 3566899999854
No 142
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.03 E-value=0.0018 Score=63.09 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-+++-|+|++|+||||||.+++-.. ......++||+....++.. .+++++.+.+.. ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45789999999999999999887665 3345678899887766643 344555432211 223445555555
Q ss_pred HHHhc-cceEEEEEccccc
Q 048813 174 FRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~~ 191 (552)
...++ +.--++|+|.|-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 55443 3456899999843
No 143
>PRK05642 DNA replication initiation factor; Validated
Probab=97.03 E-value=0.0025 Score=59.90 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
...+.|+|..|+|||.||+++++.. ...-..++|++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~---~~~~~~v~y~~~~ 82 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF---EQRGEPAVYLPLA 82 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH---HhCCCcEEEeeHH
Confidence 3678999999999999999998875 2223456676543
No 144
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.03 E-value=0.006 Score=61.54 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+..+.. ..+-++|.+|+||||+|+.++...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4478999999999999987654 467889999999999999988775
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.02 E-value=0.0026 Score=69.59 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=39.1
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++||+++++++.+.|......-+.++|.+|+|||++|+.+++..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999887555566789999999999999998875
No 146
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.02 E-value=0.00081 Score=67.33 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=41.1
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+++++..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999987766678899999999999999998876
No 147
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0031 Score=66.08 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||-+..++.|.+.+..+.+. .+-++|+.|+||||+|+.+++..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999877655 56899999999999999998875
No 148
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.01 E-value=0.0022 Score=57.53 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
...+|.+.|+.|+||||+|+.+++.. ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999887 3455555555
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.00 E-value=0.0018 Score=66.03 Aligned_cols=44 Identities=32% Similarity=0.453 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|.++.+++|.+.+.- ...+-+.++|++|+|||++|+++++..
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 67999999999887631 234568899999999999999999976
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00076 Score=63.02 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=46.5
Q ss_pred CCCccceeecccCCCcccC--chhhcCCCCceEEEcCCCCCCcCCccc-cCcCcCcEEeccCCCCc--ccchhhhcCCCC
Q 048813 406 TCPHLLTCFLNRNGLQMIP--NDFFQFMPSLKVLNLSYSKLTNLPVGI-SKVVSLQHLDLSESDIE--ELPGELKALVNL 480 (552)
Q Consensus 406 ~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L 480 (552)
.+..++.+++.+|.++... ..++.+++.|++|+++.|.+..--.+. -.+.+|++|-|.|+.+. ...+....++++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3455666677776655432 223556777777777776554322222 24556677777666432 444555566666
Q ss_pred CEEecCCC
Q 048813 481 KCLDLEYT 488 (552)
Q Consensus 481 ~~L~l~~~ 488 (552)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 66665555
No 151
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0025 Score=64.49 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4478999999999999987654 478899999999999999998765
No 152
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.0026 Score=64.26 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHhccCC----------CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEP----------AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|.+.+..+. ...+-++|+.|+|||++|+.+++..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 458899999999999997653 4568899999999999999998764
No 153
>PRK09354 recA recombinase A; Provisional
Probab=96.94 E-value=0.0026 Score=62.51 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc---cccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT---WKNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 173 (552)
.-+++-|+|.+|+||||||.++.... ...-..++||+....++.. .+++++.+... ......++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999887665 3445778999888776653 35555543221 1223445555555
Q ss_pred HHHhc-cceEEEEEccccc
Q 048813 174 FRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~~ 191 (552)
...++ ..--++|+|-|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 55444 3456899999853
No 154
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.90 E-value=0.0029 Score=62.72 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++..+.+..++..+.. .++.++|.+|+||||+|+++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4488999999999999887654 566779999999999999998865
No 155
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.90 E-value=0.0028 Score=66.72 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|++..++.+.+.+..+.+ ..+.++|+.|+||||+|+.+++..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999877654 468899999999999999998875
No 156
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.87 E-value=0.0019 Score=62.22 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeE
Q 048813 81 GLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYV 132 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~ 132 (552)
+|..+-.--.++|.++.+..|.+.|.+|.|||.||-+..=..-..++.|..+
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 4555555556788899999999999999999988865433321234455543
No 157
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0064 Score=63.38 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..+..+...+..+.. ..+-++|+.|+||||+|+.+++..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4488999999999988877653 578899999999999999998876
No 158
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.83 E-value=0.0092 Score=58.42 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcc---cCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc-------ccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLES---TTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW-------KNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 166 (552)
.-+++-|+|.+|+|||+||.+++-..... ...-..++||+....++.+.+.+ ++++++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 45688999999999999998765332111 12235789999998888887654 566666543210 11223
Q ss_pred HHHH---HHHHHHhc-cceEEEEEccccc
Q 048813 167 EQKA---LDIFRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 167 ~~~~---~~l~~~l~-~k~~LlVlDdv~~ 191 (552)
++.. ..+...+. .+--|+|+|.+-.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 3333 33333333 3445899998743
No 159
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.83 E-value=0.006 Score=56.65 Aligned_cols=95 Identities=21% Similarity=0.282 Sum_probs=53.0
Q ss_pred ccch-HHHHHHHHHHhccC---CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHc
Q 048813 79 VIGL-QSQLEQVWRCLVEE---PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKI 154 (552)
Q Consensus 79 ~vGr-~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 154 (552)
++|- .+..-...+.+.+. ....+.|+|..|+|||.|.+++++.... ...-..+++++ ..++...+...+
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~ 83 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADAL 83 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHH
Confidence 4564 33333334444332 3456899999999999999999998722 22223456653 345555555544
Q ss_pred CCCCcccccccHHHHHHHHHHHhccceEEEEEcccccc
Q 048813 155 GLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
.. . ....+.+.++.-. +|++||+...
T Consensus 84 ~~-------~----~~~~~~~~~~~~D-lL~iDDi~~l 109 (219)
T PF00308_consen 84 RD-------G----EIEEFKDRLRSAD-LLIIDDIQFL 109 (219)
T ss_dssp HT-------T----SHHHHHHHHCTSS-EEEEETGGGG
T ss_pred Hc-------c----cchhhhhhhhcCC-EEEEecchhh
Confidence 31 1 1123344445333 7889998543
No 160
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.0071 Score=63.82 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.+.+.+..+... .+.++|+.|+||||+|+.++...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999999876654 56899999999999999998775
No 161
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.003 Score=67.30 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|.+.+..++.. .+-++|+.|+||||+|+.+++..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999999999877644 68899999999999999998875
No 162
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.82 E-value=0.0011 Score=56.74 Aligned_cols=42 Identities=33% Similarity=0.305 Sum_probs=30.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHH
Q 048813 101 VGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQE 148 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 148 (552)
|.++|.+|+|||+||+.++... -....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEecccccccccee
Confidence 6789999999999999999875 12344456777767666543
No 163
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.82 E-value=0.0016 Score=67.41 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=41.1
Q ss_pred CCCcccchHHHHHHHHHHhc------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 75 TEPTVIGLQSQLEQVWRCLV------EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 75 ~~~~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....++|.++.+++|++.|. +..-+++.++|++|+||||||+.+++-.
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 34457899999999999883 3456799999999999999999998876
No 164
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0031 Score=67.65 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+.+..+.+ ..+.++|..|+||||+|+.+++..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999998887654 456899999999999999998775
No 165
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.79 E-value=0.0084 Score=52.63 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR 142 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~ 142 (552)
++.|+|.+|+||||+|+.+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999998876 23446778887765543
No 166
>PRK06547 hypothetical protein; Provisional
Probab=96.78 E-value=0.002 Score=57.17 Aligned_cols=34 Identities=26% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 89 VWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 89 l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+...+......+|+|.|.+|+||||+|+.++...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555677899999999999999999998764
No 167
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.77 E-value=0.0089 Score=54.48 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=44.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCC---eEEEEEECCccCHHHHHHHHHHH-cCCCCcccccccHHHHHHHHHH
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFN---YVIWVVVSKDLRLENIQETIGEK-IGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
||+|.|.+|+||||+|+.+..... ..... ....+.....+........-... -..........+.+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 799999999999999999988762 12222 23333333332222222221111 0111112244566666666766
Q ss_pred HhccceEEE
Q 048813 176 ILKEQKFVL 184 (552)
Q Consensus 176 ~l~~k~~Ll 184 (552)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 555665443
No 168
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0082 Score=57.00 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCc
Q 048813 81 GLQSQLEQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLND 159 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 159 (552)
++...+..+...... +...-+.++|.+|+|||.||.++.++. ....-.+.++++ .++..++......
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l---~~~g~sv~f~~~------~el~~~Lk~~~~~--- 154 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNEL---LKAGISVLFITA------PDLLSKLKAAFDE--- 154 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHH---HHcCCeEEEEEH------HHHHHHHHHHHhc---
Confidence 344555555443321 355789999999999999999999997 233344555543 4455555554431
Q ss_pred ccccccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 160 TWKNRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
......+.+.+..- =||||||+..
T Consensus 155 -------~~~~~~l~~~l~~~-dlLIiDDlG~ 178 (254)
T COG1484 155 -------GRLEEKLLRELKKV-DLLIIDDIGY 178 (254)
T ss_pred -------CchHHHHHHHhhcC-CEEEEecccC
Confidence 11112222322222 3889999854
No 169
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.0035 Score=69.17 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+++..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44889999999999999887655 47899999999999999998876
No 170
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0043 Score=56.33 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
++.+|||-|.+|+||||+|+.++... ... .+.=++...-+.. .-...........-+.....+.+-..+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~--~~~~I~~D~YYk~-~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVE--KVVVISLDDYYKD-QSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcC--cceEeeccccccc-hhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 35689999999999999999999886 323 1222222211110 00111111122222222445566667777777
Q ss_pred hccce
Q 048813 177 LKEQK 181 (552)
Q Consensus 177 l~~k~ 181 (552)
++++.
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77777
No 171
>CHL00181 cbbX CbbX; Provisional
Probab=96.75 E-value=0.011 Score=57.41 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=32.2
Q ss_pred cccchHHHHHHHHHHhc--------c-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLV--------E-------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~--------~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|.++.+++|.++.. . .....+.++|.+|+||||+|+.+++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 36787777776654421 0 123358899999999999999998865
No 172
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.74 E-value=0.003 Score=66.61 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=35.2
Q ss_pred CcccchHHHHHHHHHHhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLV---E---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++++.+.+. . ...+-+.++|++|+|||++|+++++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 347899888877766543 1 123458899999999999999999875
No 173
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.72 E-value=0.015 Score=59.57 Aligned_cols=90 Identities=21% Similarity=0.160 Sum_probs=52.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCCCCccc-ccccHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGLLNDTW-KNRRIEQKALDIF 174 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 174 (552)
...+|.++|.+|+||||+|..++... . .....+.-|++... ....+.+..++.+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-K--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 36789999999999999999998876 2 22224444554432 123455666777776543211 1122233333333
Q ss_pred HHhccceEEEEEcccc
Q 048813 175 RILKEQKFVLLLDDLW 190 (552)
Q Consensus 175 ~~l~~k~~LlVlDdv~ 190 (552)
+.+.+. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333444 578888874
No 174
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0041 Score=64.95 Aligned_cols=73 Identities=27% Similarity=0.210 Sum_probs=51.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc--CHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL--RLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
..-|.|.|..|+|||+||+++++... +....++.+|+++.-. .++.+++.+- ..+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHHH
Confidence 35689999999999999999999983 5666778888877532 2222222222 23345
Q ss_pred HhccceEEEEEccccc
Q 048813 176 ILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 176 ~l~~k~~LlVlDdv~~ 191 (552)
.+....-++||||++.
T Consensus 490 ~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHhhCCcEEEEcchhh
Confidence 6677889999999854
No 175
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.0012 Score=60.83 Aligned_cols=88 Identities=31% Similarity=0.332 Sum_probs=39.9
Q ss_pred CCCCceEEEcCCC--CCC-cCCccccCcCcCcEEeccCCCCcccc--hhhhcCCCCCEEecCCCcCccccc---hhhhcC
Q 048813 430 FMPSLKVLNLSYS--KLT-NLPVGISKVVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTRNLITIP---RQLISN 501 (552)
Q Consensus 430 ~l~~L~~L~l~~~--~l~-~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lP---~~~i~~ 501 (552)
.+++|+.|.++.| .+. .++.....+++|++|++++|.++-+. .....+.+|..|++.+|.... +- ..++.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHH
Confidence 3444555555544 222 13333334455555555555443211 123444555555555554221 21 123455
Q ss_pred CCCcceeeecCcCCCCC
Q 048813 502 LSRLHVLRMFGASHNAF 518 (552)
Q Consensus 502 l~~L~~L~l~~~~~~~~ 518 (552)
+++|.+|+-..+.....
T Consensus 142 l~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 142 LPSLKYLDGCDVDGEEA 158 (260)
T ss_pred hhhhccccccccCCccc
Confidence 66666666655555433
No 176
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.69 E-value=0.014 Score=55.07 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQET 149 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 149 (552)
...++.|.|.+|+|||++|.++.... -.....++|++.... ..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeCC--HHHHHHH
Confidence 45799999999999999998876543 234578899987763 4445444
No 177
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0045 Score=52.74 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=34.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCc
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLND 159 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 159 (552)
+|.|-|.+|+||||+|+.++++. .-.| + +...+.++|++..|++-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999987 1111 1 234588889988887543
No 178
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.009 Score=63.84 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+.+..+.+. .+.++|+.|+||||+|+.+++..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999999877654 48899999999999999998876
No 179
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.69 E-value=0.0076 Score=60.45 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=51.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-.++.|.|.+|+|||||+.+++... ......++|++.... ..++ ..-+++++...+.+ ...+.++....+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 34699999999999999999998776 233356788876543 3333 22245565443322 122233333322
Q ss_pred HHHhccceEEEEEccccc
Q 048813 174 FRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~~k~~LlVlDdv~~ 191 (552)
. ..+.-++|+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 1 23566899999743
No 180
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.68 E-value=0.0076 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++.+.|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 181
>PRK04296 thymidine kinase; Provisional
Probab=96.68 E-value=0.0025 Score=57.77 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILK 178 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 178 (552)
.++.|+|..|.||||+|..++.+. ..+...++.+.- .++.+.....++++++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 578899999999999999988876 233344444421 112222233455666543322112233444444444 23
Q ss_pred cceEEEEEccc
Q 048813 179 EQKFVLLLDDL 189 (552)
Q Consensus 179 ~k~~LlVlDdv 189 (552)
++.-+||+|.+
T Consensus 77 ~~~dvviIDEa 87 (190)
T PRK04296 77 EKIDCVLIDEA 87 (190)
T ss_pred CCCCEEEEEcc
Confidence 34458999998
No 182
>PRK08181 transposase; Validated
Probab=96.68 E-value=0.005 Score=58.79 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=43.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRIL 177 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 177 (552)
..-+.++|.+|+|||.||.++.+.. ......++|+.+ .++...+..... ....... .+.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a---~~~g~~v~f~~~------~~L~~~l~~a~~-------~~~~~~~----l~~l 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLAL---IENGWRVLFTRT------TDLVQKLQVARR-------ELQLESA----IAKL 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH---HHcCCceeeeeH------HHHHHHHHHHHh-------CCcHHHH----HHHH
Confidence 3569999999999999999999876 223344556543 445555543221 1112222 1222
Q ss_pred ccceEEEEEccccc
Q 048813 178 KEQKFVLLLDDLWQ 191 (552)
Q Consensus 178 ~~k~~LlVlDdv~~ 191 (552)
. +--|||+||+..
T Consensus 166 ~-~~dLLIIDDlg~ 178 (269)
T PRK08181 166 D-KFDLLILDDLAY 178 (269)
T ss_pred h-cCCEEEEecccc
Confidence 2 234999999843
No 183
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.0013 Score=60.55 Aligned_cols=105 Identities=28% Similarity=0.291 Sum_probs=77.0
Q ss_pred CcccceEEEeecCCcccCCCCCCCCccceeecccCCC--c-ccCchhhcCCCCceEEEcCCCCCCcC--CccccCcCcCc
Q 048813 384 GWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGL--Q-MIPNDFFQFMPSLKVLNLSYSKLTNL--PVGISKVVSLQ 458 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l--~-~~~~~~~~~l~~L~~L~l~~~~l~~l--p~~~~~l~~L~ 458 (552)
.+.++..+++.+..+..+..++.+++|+.|.++.|.+ . .++.- ....++|++|++++|++..+ -..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 4557778888888888888888899999999999933 2 22222 34569999999999977642 12456788899
Q ss_pred EEeccCCCCcccc----hhhhcCCCCCEEecCCCc
Q 048813 459 HLDLSESDIEELP----GELKALVNLKCLDLEYTR 489 (552)
Q Consensus 459 ~L~l~~~~l~~lp----~~i~~L~~L~~L~l~~~~ 489 (552)
.|++.+|....+- .-+.-+++|++||-....
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 9999998766553 225567889999876553
No 184
>PRK09183 transposase/IS protein; Provisional
Probab=96.67 E-value=0.0045 Score=59.05 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+.|+|.+|+|||+||.++++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998775
No 185
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.66 E-value=0.0076 Score=57.65 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 89 VWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 89 l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++++.+.+..+|.|.|.+|+|||||+..+.+..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555678999999999999999999998875
No 186
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.64 E-value=0.014 Score=54.96 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc----------------
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT---------------- 160 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 160 (552)
.-+++.|+|.+|+|||++|.++.... ...-..++|++..+. ...+.+.+ .+++..-.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45799999999999999999986553 234568899988765 34455543 333322110
Q ss_pred --cccccHHHHHHHHHHHhcc-ceEEEEEccc
Q 048813 161 --WKNRRIEQKALDIFRILKE-QKFVLLLDDL 189 (552)
Q Consensus 161 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 189 (552)
......++....+.+.+.. +.-++|+|.+
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 0112234555556665543 4457888876
No 187
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.0093 Score=63.54 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||-+..++.|.+.+..+.. ..+-++|..|+||||+|+.+++..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999987765 456899999999999999997765
No 188
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.62 E-value=0.0048 Score=63.69 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=46.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCC-CeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNF-NYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
..-+.|+|.+|+|||.||+++++.. . ..+. ..++|++. .++...+...+... ..+ .+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l-~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV-V-QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH-H-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cHH----HHHHH
Confidence 3569999999999999999999986 2 2222 35666654 34555555554311 111 22233
Q ss_pred hccceEEEEEccccc
Q 048813 177 LKEQKFVLLLDDLWQ 191 (552)
Q Consensus 177 l~~k~~LlVlDdv~~ 191 (552)
...+.-+|++||+..
T Consensus 191 ~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 191 YRKKVDVLLIDDVQF 205 (440)
T ss_pred HHhcCCEEEEechhh
Confidence 333455899999964
No 189
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.61 E-value=0.016 Score=56.24 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHHHhc--------c-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV--------E-------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~--------~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|.++.+++|.++.. . ....-+.++|.+|+|||++|+.+++..
T Consensus 24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 6788777777755421 0 112358899999999999998887765
No 190
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.61 E-value=0.0016 Score=54.71 Aligned_cols=21 Identities=33% Similarity=0.741 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~ 121 (552)
|+|.|++|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999877
No 191
>CHL00176 ftsH cell division protein; Validated
Probab=96.61 E-value=0.007 Score=65.05 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCcccchHHHHHHHHHHhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLV---E---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.++.++++.+.+. . ...+-|.++|++|+|||++|+++++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899888888766542 1 123468999999999999999998875
No 192
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.60 E-value=0.017 Score=57.05 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcc---cCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc-------cccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLES---TTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 166 (552)
.-.++-|+|.+|+|||+|+..++-..... .+.-..++||+....|+...+.+ +++.++..... ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 44688899999999999998875332111 11235789999999888887655 55666654221 112233
Q ss_pred HHHH---HHHHHHhcc-ceEEEEEcccc
Q 048813 167 EQKA---LDIFRILKE-QKFVLLLDDLW 190 (552)
Q Consensus 167 ~~~~---~~l~~~l~~-k~~LlVlDdv~ 190 (552)
++.. ..+...+.. +--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 3332 223233332 34588999874
No 193
>PRK06921 hypothetical protein; Provisional
Probab=96.59 E-value=0.0093 Score=57.08 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCC-CCeEEEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTN-FNYVIWVVV 137 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~-f~~~~wv~~ 137 (552)
....+.++|..|+|||.||.++++.. ... ...++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l---~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL---MRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH---hhhcCceEEEEEH
Confidence 45689999999999999999999986 222 345666654
No 194
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00041 Score=64.75 Aligned_cols=130 Identities=25% Similarity=0.281 Sum_probs=88.5
Q ss_pred CcccceEEEeecCC-cccCC---CCCCCCccceeecccCCCcc--cCchhhcCCCCceEEEcCCC--CC--CcCCccccC
Q 048813 384 GWEKARRLSLMHNQ-ITNLS---EIPTCPHLLTCFLNRNGLQM--IPNDFFQFMPSLKVLNLSYS--KL--TNLPVGISK 453 (552)
Q Consensus 384 ~~~~l~~L~l~~~~-l~~l~---~~~~~~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~--~l--~~lp~~~~~ 453 (552)
+-.++++|+++++. +.... -+..|+.|..|+++.|.+.. ..-..-.--+.|..|+++|+ ++ +.+.--...
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 34578899998764 33221 14778899999999986531 11111122456888999998 22 223334467
Q ss_pred cCcCcEEeccCC-CCc-ccchhhhcCCCCCEEecCCCcCccccchhh--hcCCCCcceeeecCcCC
Q 048813 454 VVSLQHLDLSES-DIE-ELPGELKALVNLKCLDLEYTRNLITIPRQL--ISNLSRLHVLRMFGASH 515 (552)
Q Consensus 454 l~~L~~L~l~~~-~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~--i~~l~~L~~L~l~~~~~ 515 (552)
+++|..|||+.| .++ .+-..+.+++.|++|.++.|+. ..|..+ +...++|.+|+.+||-.
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 789999999988 444 3445688899999999999973 334321 57889999999999854
No 195
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.00021 Score=65.94 Aligned_cols=102 Identities=26% Similarity=0.273 Sum_probs=72.5
Q ss_pred CccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcccch--hhhcCCCCCEEec
Q 048813 408 PHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPG--ELKALVNLKCLDL 485 (552)
Q Consensus 408 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l 485 (552)
.+.+.|++-|+.+..+. ++.+|+.|.+|.|+-|+|+.|- .+..++.|+.|.|+.|.|..+.+ -+.+|++|+.|=|
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34455666666665543 4678888888888888888874 46778888888888888877653 3667788888888
Q ss_pred CCCcCccccchh----hhcCCCCcceeeecC
Q 048813 486 EYTRNLITIPRQ----LISNLSRLHVLRMFG 512 (552)
Q Consensus 486 ~~~~~l~~lP~~----~i~~l~~L~~L~l~~ 512 (552)
..|.....-+.. ++.-|++|+.|+-..
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 777765555432 466778887776543
No 196
>PRK06526 transposase; Provisional
Probab=96.57 E-value=0.0048 Score=58.54 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...-+.|+|++|+|||+||.++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998876
No 197
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.0095 Score=63.67 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=40.2
Q ss_pred CCcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+||.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+++..
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345899999999999999877654 46789999999999999998876
No 198
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.56 E-value=0.01 Score=57.88 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCC
Q 048813 81 GLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGL 156 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 156 (552)
++........+++.. ....-+.|+|..|+|||.||.++++.. ...-..+.++++. .+...+....+-
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l---~~~g~~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL---AKKGVSSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEEEHH------HHHHHHHHHHhc
Confidence 444444444444442 134679999999999999999999987 2333345565543 455555544421
Q ss_pred CCcccccccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 157 LNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
.+..+. .+.+. +-=||||||+.-
T Consensus 206 -------~~~~~~----l~~l~-~~dlLiIDDiG~ 228 (306)
T PRK08939 206 -------GSVKEK----IDAVK-EAPVLMLDDIGA 228 (306)
T ss_pred -------CcHHHH----HHHhc-CCCEEEEecCCC
Confidence 112222 22233 345899999853
No 199
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.55 E-value=0.0046 Score=68.99 Aligned_cols=46 Identities=30% Similarity=0.432 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.+|++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999888742 134578999999999999999998775
No 200
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.55 E-value=0.0054 Score=67.96 Aligned_cols=44 Identities=34% Similarity=0.428 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|.+..+++|.+.+.- ...+-|.++|.+|+|||+||+++++..
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 78999999999887631 234578899999999999999999875
No 201
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.54 E-value=0.0036 Score=60.07 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHHHhc---------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV---------------EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|.+..+++|.+... .+....+.++|++|+||||+|+.+++..
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 7898888887764421 0234567899999999999999998865
No 202
>PRK10867 signal recognition particle protein; Provisional
Probab=96.54 E-value=0.021 Score=58.27 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCC-CCeEEEEEECCccCHH--HHHHHHHHHcCCCCccc-ccccHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTN-FNYVIWVVVSKDLRLE--NIQETIGEKIGLLNDTW-KNRRIEQKALD 172 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~~~~ 172 (552)
...+|.++|.+|+||||.|..++... ... ...++.|++.. +... +-++..+.+.+.+-... ...+..+....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l---~~~~G~kV~lV~~D~-~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~ 174 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL---KKKKKKKVLLVAADV-YRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKA 174 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH---HHhcCCcEEEEEccc-cchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 36799999999999999998888766 222 23445555443 3322 33445566665442111 12234444433
Q ss_pred HHHHhccceE-EEEEcccc
Q 048813 173 IFRILKEQKF-VLLLDDLW 190 (552)
Q Consensus 173 l~~~l~~k~~-LlVlDdv~ 190 (552)
..+..+.+.+ ++|+|-.-
T Consensus 175 a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 3333334444 77777764
No 203
>PRK07667 uridine kinase; Provisional
Probab=96.53 E-value=0.0054 Score=55.83 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=28.8
Q ss_pred HHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 86 LEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 86 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++.|.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555543 345799999999999999999998876
No 204
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.014 Score=61.98 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHhccCCCeE-EEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGI-VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+.+..+.+.- +.++|+.|+||||+|+.+++..
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999998876554 6899999999999999998875
No 205
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0031 Score=66.17 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHHHhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHH
Q 048813 79 VIGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGE 152 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 152 (552)
-+|.++.+++|.+.|.- -...+++++|++|+|||+|++.++... ...| +-+.++.-.|-.++...=-.
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcccccc
Confidence 56999999999998852 245799999999999999999999886 3444 22344544444444322222
Q ss_pred HcCCCCcccccccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 153 KIGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
.+|. -....+..+++ .+.+.=+++||.++.
T Consensus 399 YIGa--------mPGrIiQ~mkk-a~~~NPv~LLDEIDK 428 (782)
T COG0466 399 YIGA--------MPGKIIQGMKK-AGVKNPVFLLDEIDK 428 (782)
T ss_pred cccc--------CChHHHHHHHH-hCCcCCeEEeechhh
Confidence 2221 11111212221 244566889999854
No 206
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.52 E-value=0.0058 Score=57.27 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=30.8
Q ss_pred ccchHHH-HHHHHHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQ-LEQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~-~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|.... +..+.++... ...+.+.|+|..|+|||+||+++++..
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3355443 3444444332 345688999999999999999999875
No 207
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.52 E-value=0.014 Score=54.67 Aligned_cols=93 Identities=19% Similarity=0.139 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC-----ccCHHHHHHHHHHHcCCCCccc-----ccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK-----DLRLENIQETIGEKIGLLNDTW-----KNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~~ 166 (552)
...+++|+|-+|+||||+|+.+..-. +.-.+.+++.-.+ .....+...+++...++..... +-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45699999999999999999998765 2223334333111 2223345566777777544211 12222
Q ss_pred HHHHHHHHHHhccceEEEEEccccccc
Q 048813 167 EQKALDIFRILKEQKFVLLLDDLWQRV 193 (552)
Q Consensus 167 ~~~~~~l~~~l~~k~~LlVlDdv~~~~ 193 (552)
+...-.+.+.|.-+.-++|.|..-+.-
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 333445778888899999999975543
No 208
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0035 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
--|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999886
No 209
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.50 E-value=0.006 Score=64.02 Aligned_cols=73 Identities=25% Similarity=0.297 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
.-+|.-++|++|+||||||..++++. ...++=|++|..-....+-..|...+... ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~-----------------s~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNH-----------------SV 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhc-----------------cc
Confidence 34689999999999999999998864 23567788888877776666666554321 12
Q ss_pred h--ccceEEEEEcccccc
Q 048813 177 L--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 177 l--~~k~~LlVlDdv~~~ 192 (552)
+ ..+..-||+|.++-.
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 256677888887653
No 210
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.49 E-value=0.0041 Score=63.52 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|+||++.++.+...+..+ .-|.|.|.+|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 34889999999999888766 578899999999999999998865
No 211
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.48 E-value=0.0065 Score=60.80 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=37.3
Q ss_pred CcccchHHHHHHHHHHhccC--------------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEE--------------PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+++|.++.+..+.-.+... ..+-|.++|++|+|||++|++++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999887665421 23678999999999999999999876
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.029 Score=55.78 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=48.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
..++|+++|.+|+||||++..++... ...-..+..++..... ...+-+...+..++.+-. ...+.......+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L---~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF---HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH---HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34799999999999999999998776 2222344555544321 122233444445554321 12334444444433
Q ss_pred Hhcc-ceEEEEEccc
Q 048813 176 ILKE-QKFVLLLDDL 189 (552)
Q Consensus 176 ~l~~-k~~LlVlDdv 189 (552)
.-.. +.=++++|-.
T Consensus 315 lk~~~~~DvVLIDTa 329 (436)
T PRK11889 315 FKEEARVDYILIDTA 329 (436)
T ss_pred HHhccCCCEEEEeCc
Confidence 2221 2346677765
No 213
>PHA00729 NTP-binding motif containing protein
Probab=96.47 E-value=0.0038 Score=57.30 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 89 VWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 89 l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.+.+.+.+...|.|+|.+|+||||||..+++..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555566789999999999999999998875
No 214
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.47 E-value=0.015 Score=56.20 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
..++++|+|++|+||||++..++... .....-..+..|+..... ...+.+......++.+.. ...+..+....+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 34699999999999999999988776 212111345566654321 122333444444554332 1223333333333
Q ss_pred HhccceEEEEEccc
Q 048813 176 ILKEQKFVLLLDDL 189 (552)
Q Consensus 176 ~l~~k~~LlVlDdv 189 (552)
.+.+ .=++++|..
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3333 347777753
No 215
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.46 E-value=0.0025 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998873
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.46 E-value=0.0069 Score=54.17 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
...-+.|+|..|+|||.||.++.+... . +-..+.|+. ..++...+-..- .....++ +.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~-~g~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--R-KGYSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--H-TT--EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--c-CCcceeEee------cCceeccccccc-------cccchhh----hcCc
Confidence 346799999999999999999998762 2 333456664 344555554321 1111122 2233
Q ss_pred hccceEEEEEccccc
Q 048813 177 LKEQKFVLLLDDLWQ 191 (552)
Q Consensus 177 l~~k~~LlVlDdv~~ 191 (552)
+.+ -=||||||+..
T Consensus 106 l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LKR-VDLLILDDLGY 119 (178)
T ss_dssp HHT-SSCEEEETCTS
T ss_pred ccc-ccEecccccce
Confidence 333 34788999854
No 217
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.46 E-value=0.0042 Score=58.31 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+...+|+|.|..|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999998876
No 218
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.45 E-value=0.0036 Score=61.28 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+.++|||++|+|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999986
No 219
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.45 E-value=0.022 Score=55.98 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhc-c-cC-CCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc-------ccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLE-S-TT-NFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW-------KNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~-~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 166 (552)
...++.|+|.+|+|||+||..++..... . .+ .-..++|++....++...+ ..+++.++...... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCCh
Confidence 4579999999999999999888653211 0 11 2246799998887777653 44555555432110 11223
Q ss_pred HHHHHH---HHHHhc-cceEEEEEcccc
Q 048813 167 EQKALD---IFRILK-EQKFVLLLDDLW 190 (552)
Q Consensus 167 ~~~~~~---l~~~l~-~k~~LlVlDdv~ 190 (552)
++.... +...+. .+--|+|+|.+-
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 333222 223333 344588888873
No 220
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.012 Score=63.11 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|.+.+..+... .+.++|..|+||||+|+.++...
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l 63 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI 63 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999999887655 47899999999999999988765
No 221
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.014 Score=58.12 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=50.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
..++.++|+.|+||||++.+++... ........+..++.... ....+-++...+.++.+.... .+..+....+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~--~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV--KDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec--CCcccHHHHH-HH
Confidence 4699999999999999999998875 11112235555654332 234455666666776544221 1222222222 33
Q ss_pred hccceEEEEEcccc
Q 048813 177 LKEQKFVLLLDDLW 190 (552)
Q Consensus 177 l~~k~~LlVlDdv~ 190 (552)
+.++ -++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4454 456688874
No 222
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.42 E-value=0.015 Score=52.77 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=28.2
Q ss_pred HHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 88 QVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 88 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.+.+..+.. ..+.++|..|+||||+|+.+.+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666655 578899999999999999998875
No 223
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.017 Score=55.03 Aligned_cols=92 Identities=20% Similarity=0.126 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHH---HHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQK---ALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~~~l 173 (552)
.-+++=|+|+.|.||||+|-+++-.. +.....++||+....+++..+..--...+..- ......+.++. +..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l-~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNL-LVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcce-eEecCCCHHHHHHHHHHH
Confidence 45789999999999999998877665 45555899999999888876544332212110 00122333333 3333
Q ss_pred HHHhccceEEEEEcccccc
Q 048813 174 FRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 174 ~~~l~~k~~LlVlDdv~~~ 192 (552)
.+....+--|+|+|.+-..
T Consensus 135 ~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHhccCCCCEEEEecCccc
Confidence 3333444569999998544
No 224
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.41 E-value=0.018 Score=58.70 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-ccccHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-KNRRIEQKALDIFR 175 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 175 (552)
..++.++|.+|+||||.|..++... . ......+.-|++.... ...+-+...+.+.+.+.... ...+..+......+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l-~-~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL-K-KKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-H-HhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 5689999999999999998888764 1 1122344555544321 22333445566666543221 11233344333333
Q ss_pred HhccceE-EEEEcccc
Q 048813 176 ILKEQKF-VLLLDDLW 190 (552)
Q Consensus 176 ~l~~k~~-LlVlDdv~ 190 (552)
....+.+ ++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3434444 77788764
No 225
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.41 E-value=0.0031 Score=55.90 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467889999999999999998876
No 226
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.41 E-value=0.00082 Score=64.21 Aligned_cols=128 Identities=22% Similarity=0.306 Sum_probs=75.8
Q ss_pred cccceEEEeecCCcccCCC------CCCCCccceeecccCCCcc----cCchhhcCCCCceEEEcCCCCCCc-----CCc
Q 048813 385 WEKARRLSLMHNQITNLSE------IPTCPHLLTCFLNRNGLQM----IPNDFFQFMPSLKVLNLSYSKLTN-----LPV 449 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~l~~------~~~~~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~l~~-----lp~ 449 (552)
.+++|.+....|.+..-+. +..++.|..+.+..|.+.. +...-+..+++|++|||..|.++. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3567777777777655332 3445667777777775532 111224567778888888776652 445
Q ss_pred cccCcCcCcEEeccCCCCcc-----cchhh-hcCCCCCEEecCCCcCccc-----cchhhhcCCCCcceeeecCcC
Q 048813 450 GISKVVSLQHLDLSESDIEE-----LPGEL-KALVNLKCLDLEYTRNLIT-----IPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 450 ~~~~l~~L~~L~l~~~~l~~-----lp~~i-~~L~~L~~L~l~~~~~l~~-----lP~~~i~~l~~L~~L~l~~~~ 514 (552)
.++.+++|+.|+++.|.++. +-..+ ...++|+.|.+.+|. +.. +- ..+...+.|..|++.+|.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la-~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALA-ACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHH-HHHhcchhhHHhcCCccc
Confidence 56667778888887777663 11222 235677888877775 221 11 124556777777775543
No 227
>PRK08233 hypothetical protein; Provisional
Probab=96.41 E-value=0.0029 Score=57.01 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998775
No 228
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.38 E-value=0.004 Score=66.42 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHhccC-----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEE-----PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|-+..++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34889999999999988642 34579999999999999999998765
No 229
>PRK04328 hypothetical protein; Provisional
Probab=96.38 E-value=0.02 Score=54.31 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL 141 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~ 141 (552)
.-.++.|.|.+|+|||+||.++.... ......++|++..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCCH
Confidence 45799999999999999998876553 2345678899877643
No 230
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.38 E-value=0.021 Score=58.65 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRIL 177 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 177 (552)
...+.|+|..|+|||.||+++++.. .....-..+++++. .++...+...+... ..+ .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSS------EKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 3568999999999999999999986 21111234566643 33444444444311 111 222333
Q ss_pred ccceEEEEEccccc
Q 048813 178 KEQKFVLLLDDLWQ 191 (552)
Q Consensus 178 ~~k~~LlVlDdv~~ 191 (552)
++ .-+||+||+..
T Consensus 198 ~~-~dlLiiDDi~~ 210 (405)
T TIGR00362 198 RS-VDLLLIDDIQF 210 (405)
T ss_pred Hh-CCEEEEehhhh
Confidence 32 23888999964
No 231
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.37 E-value=0.022 Score=54.68 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=48.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH--HHHHHHHHHcCCCCccc-ccccHHHH-HHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE--NIQETIGEKIGLLNDTW-KNRRIEQK-ALD 172 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~-~~~~~~~~-~~~ 172 (552)
+.++|.++|++|+||||++..++... ...-..+..++... +... +-+.......+.+-... ...+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l---~~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL---KKQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH---HhcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 46899999999999999999998776 23334566666553 3322 22333445554321100 11122222 233
Q ss_pred HHHHhccceEEEEEccc
Q 048813 173 IFRILKEQKFVLLLDDL 189 (552)
Q Consensus 173 l~~~l~~k~~LlVlDdv 189 (552)
+.....+..-++++|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 33333333456777765
No 232
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.37 E-value=0.02 Score=55.82 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=54.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-+++-|+|..|+||||||.++.... +.....++||+....++.. .++++|.+.+.. .+...++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHH
Confidence 35699999999999999998887765 3445678999988776654 345555543321 233445555555
Q ss_pred HHHhccc-eEEEEEcccccc
Q 048813 174 FRILKEQ-KFVLLLDDLWQR 192 (552)
Q Consensus 174 ~~~l~~k-~~LlVlDdv~~~ 192 (552)
.+.++.. .-++|+|-|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 5555543 458899998654
No 233
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.36 E-value=0.035 Score=52.06 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD 140 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~ 140 (552)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~---~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG---LRDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH---HhcCCeEEEEEccCC
Confidence 45799999999999999999876553 123467888887544
No 234
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.017 Score=61.29 Aligned_cols=46 Identities=26% Similarity=0.268 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEP-AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|.+.+..+. ...+-++|+.|+||||+|+.+++..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 458899999999999888765 4577889999999999999998876
No 235
>PRK14974 cell division protein FtsY; Provisional
Probab=96.34 E-value=0.033 Score=54.98 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC--HHHHHHHHHHHcCCC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR--LENIQETIGEKIGLL 157 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~ 157 (552)
+..+|.++|++|+||||++..++... . ...+ .++.+... .+. ..+-++..+..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAAGD-TFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEecCC-cCcHHHHHHHHHHHHHcCCc
Confidence 35799999999999999988888765 2 2223 34444432 232 223445566667653
No 236
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.33 E-value=0.011 Score=65.52 Aligned_cols=46 Identities=22% Similarity=0.438 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHhcc------C---CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE------E---PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------~---~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4478999999999887752 1 23467899999999999999998865
No 237
>PRK06762 hypothetical protein; Provisional
Probab=96.33 E-value=0.0034 Score=55.60 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998775
No 238
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.32 E-value=0.0035 Score=60.08 Aligned_cols=127 Identities=22% Similarity=0.305 Sum_probs=64.8
Q ss_pred ccceEEEeecCCccc--CCC----CCCCCccceeecccCCCcccCchh-------------hcCCCCceEEEcCCCCCCc
Q 048813 386 EKARRLSLMHNQITN--LSE----IPTCPHLLTCFLNRNGLQMIPNDF-------------FQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~--l~~----~~~~~~L~~L~l~~~~l~~~~~~~-------------~~~l~~L~~L~l~~~~l~~ 446 (552)
++++.|+|+.|.+.. ++. +..+..|+.|++.+|++...-... ...-+.||++....|.+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 466777777766432 111 244666677777766554322111 1234456666666665553
Q ss_pred CC-----ccccCcCcCcEEeccCCCCcc-----cchhhhcCCCCCEEecCCCcCcc----ccchhhhcCCCCcceeeecC
Q 048813 447 LP-----VGISKVVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTRNLI----TIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 447 lp-----~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~----~lP~~~i~~l~~L~~L~l~~ 512 (552)
-+ ..+...+.|+.+.+..|.|.. +-..+.++++|+.||++.|.... .+... +..|+.|+.|++.+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeecccc
Confidence 32 234444556666665554431 23345566666666666653110 11111 44555666666655
Q ss_pred c
Q 048813 513 A 513 (552)
Q Consensus 513 ~ 513 (552)
|
T Consensus 251 c 251 (382)
T KOG1909|consen 251 C 251 (382)
T ss_pred c
Confidence 5
No 239
>PTZ00035 Rad51 protein; Provisional
Probab=96.32 E-value=0.041 Score=54.59 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=54.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcc---cCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc-------cccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLES---TTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 166 (552)
.-.++.|+|.+|+|||||+..++-..... ...-..++||+....++...+ .+++++++..... ....+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 45789999999999999998886543100 112346779998777776653 4445555543211 012223
Q ss_pred HHHHHHH---HHHhc-cceEEEEEccccc
Q 048813 167 EQKALDI---FRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 167 ~~~~~~l---~~~l~-~k~~LlVlDdv~~ 191 (552)
++....+ ...+. .+--|||+|-+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 3333332 23332 3445889998743
No 240
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.32 E-value=0.0037 Score=57.78 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999998875
No 241
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.31 E-value=0.0053 Score=53.04 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEE
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVV 136 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~ 136 (552)
.+|-|.|.+|+||||||+++.+.. ......+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 589999999999999999999987 34445555554
No 242
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.31 E-value=0.041 Score=54.35 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhccc---CCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc-------cccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLEST---TNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 166 (552)
...++-|+|.+|+|||++|.+++-...... ..-..++||+....++...+.+ +++.++..... ....+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 456889999999999999988875531111 1124899999998888776554 34445432211 011111
Q ss_pred ---HHHHHHHHHHhcc--ceEEEEEccccc
Q 048813 167 ---EQKALDIFRILKE--QKFVLLLDDLWQ 191 (552)
Q Consensus 167 ---~~~~~~l~~~l~~--k~~LlVlDdv~~ 191 (552)
......+...+.. +--|||+|-+..
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1223444455543 334899998743
No 243
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.29 E-value=0.0035 Score=57.80 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|.+|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998875
No 244
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.29 E-value=0.02 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|||.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 245
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.28 E-value=0.029 Score=54.09 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+|||.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876554
No 246
>PTZ00301 uridine kinase; Provisional
Probab=96.27 E-value=0.0039 Score=57.25 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|||.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 247
>PF14516 AAA_35: AAA-like domain
Probab=96.26 E-value=0.15 Score=50.65 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=70.2
Q ss_pred CCcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-----cCHHH----H
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-----LRLEN----I 146 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~----~ 146 (552)
.+.-|.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+.. ...-..++++++..- .+... +
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l---~~~~~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL---QQQGYRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH---HHCCCEEEEEEeecCCCcccCCHHHHHHHH
Confidence 455679986777777777653 3799999999999999999998876 223345567775542 23444 4
Q ss_pred HHHHHHHcCCCCcc---cc--cccHHHHHHHHHHHh---ccceEEEEEcccccc
Q 048813 147 QETIGEKIGLLNDT---WK--NRRIEQKALDIFRIL---KEQKFVLLLDDLWQR 192 (552)
Q Consensus 147 ~~~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~ 192 (552)
...+.+++++...- +. ..........+.+.+ .+++.+|++|+++..
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 45556666654311 00 111122222333332 258999999998753
No 248
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.26 E-value=0.0038 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 249
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.087 Score=51.56 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|.++.++-|.+...- ...+-|..+|++|.|||-||++||..-
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 45666655555554321 245578899999999999999999874
No 250
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.24 E-value=0.015 Score=65.27 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=43.2
Q ss_pred CCcccchHHHHHHHHHHhcc-------C--CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 76 EPTVIGLQSQLEQVWRCLVE-------E--PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
...++|.+..++.|.+.+.. . +...+.++|+.|+|||+||+.+++.. .+.-...+-++.+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~ 577 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSE 577 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchh
Confidence 34588999999999887752 1 23456789999999999999998875 22223344444443
No 251
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.24 E-value=0.018 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|.|++|+||||+|++++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999876
No 252
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.22 E-value=0.05 Score=53.62 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcc---cCCCCeEEEEEECCccCHHHHHHHHHHHcCC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLES---TTNFNYVIWVVVSKDLRLENIQETIGEKIGL 156 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 156 (552)
...++-|+|.+|+|||++|.+++-..... ...-..++||+....++...+.+ +++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 45788999999999999998887653110 01113799999988888776543 3444443
No 253
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.22 E-value=0.019 Score=64.59 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=44.0
Q ss_pred CcccchHHHHHHHHHHhcc------C---CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 77 PTVIGLQSQLEQVWRCLVE------E---PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------~---~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
..++|.+..++.+...+.. + ...++.++|+.|+|||++|+.++... ...-...+.++++.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 4488999999999888753 1 24578899999999999999998875 23333444555553
No 254
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.019 Score=54.68 Aligned_cols=82 Identities=13% Similarity=0.239 Sum_probs=49.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhh-cccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFL-ESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
-|+|-++|++|.|||+|.+++++... +....|....-+.++. ..+..+-+.. ....+..+..+|++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 36889999999999999999999873 2233444444444432 1222222221 123455566667777
Q ss_pred hccce--EEEEEccccc
Q 048813 177 LKEQK--FVLLLDDLWQ 191 (552)
Q Consensus 177 l~~k~--~LlVlDdv~~ 191 (552)
+.++. +.+.+|.|.+
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 76655 3455688843
No 255
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.20 E-value=0.015 Score=60.48 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=44.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRIL 177 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 177 (552)
..-+.|+|.+|+|||+||+++++.. .....-..+++++.. .+...+...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-------~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTSE------KFTNDFVNALRNN-------TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEHH------HHHHHHHHHHHcC-------cH----HHHHHHH
Confidence 3568999999999999999999987 211112345566443 3334444444211 11 1223333
Q ss_pred ccceEEEEEccccc
Q 048813 178 KEQKFVLLLDDLWQ 191 (552)
Q Consensus 178 ~~k~~LlVlDdv~~ 191 (552)
+ +.-+||+||+..
T Consensus 210 ~-~~dlLiiDDi~~ 222 (450)
T PRK00149 210 R-SVDVLLIDDIQF 222 (450)
T ss_pred h-cCCEEEEehhhh
Confidence 3 234888999954
No 256
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.20 E-value=0.012 Score=59.02 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=48.6
Q ss_pred CcccchHHHHHHHHHHhcc---------C-----CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC-Ccc
Q 048813 77 PTVIGLQSQLEQVWRCLVE---------E-----PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS-KDL 141 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~---------~-----~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s-~~~ 141 (552)
..++|.++.+..+..++.. + ....|.++|++|+|||++|+.++.......-.++..-|...+ ...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4588999999999877743 0 135789999999999999999988762222223443333221 122
Q ss_pred CHHHHHHHHHH
Q 048813 142 RLENIQETIGE 152 (552)
Q Consensus 142 ~~~~~~~~i~~ 152 (552)
+...+.+.++.
T Consensus 95 d~e~~ir~L~~ 105 (443)
T PRK05201 95 DVESIIRDLVE 105 (443)
T ss_pred CHHHHHHHHHH
Confidence 44455555544
No 257
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.048 Score=53.92 Aligned_cols=94 Identities=22% Similarity=0.387 Sum_probs=57.5
Q ss_pred HHHHHHhccC--CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccc--
Q 048813 87 EQVWRCLVEE--PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWK-- 162 (552)
Q Consensus 87 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-- 162 (552)
.++-..|..+ .-.+|.|-|-+|||||||.-+++.+. ...- .+++|+-.+. ..+ .+--+++++.+.+...
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l---A~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~ 152 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL---AKRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLL 152 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHH---HhcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEe
Confidence 3444444443 34689999999999999999998887 2222 7777765554 222 2334566765543322
Q ss_pred -cccHHHHHHHHHHHh-ccceEEEEEccccc
Q 048813 163 -NRRIEQKALDIFRIL-KEQKFVLLLDDLWQ 191 (552)
Q Consensus 163 -~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 191 (552)
..+.++ +.+.+ +.+.-++|+|-+..
T Consensus 153 aEt~~e~----I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 153 AETNLED----IIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred hhcCHHH----HHHHHHhcCCCEEEEeccce
Confidence 223333 33333 35778999999743
No 258
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.01 Score=62.31 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHH
Q 048813 79 VIGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENI 146 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 146 (552)
-+|.++.+++|.+.+.- -...+++++|++|||||++|+.|+... ...| +-++++.-.|..+|
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkF---fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKF---FRFSVGGMTDVAEI 480 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCce---EEEeccccccHHhh
Confidence 56999999999998852 245799999999999999999999887 3333 12345555555544
No 259
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.19 E-value=0.013 Score=60.34 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILK 178 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 178 (552)
.-+.|+|..|+|||+||+++++... .....+++++. ..+...+...+... . ...+++.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~------~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRS------ELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeH------HHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 5689999999999999999999862 22234455542 33444554444311 1 112333333
Q ss_pred cceEEEEEccccc
Q 048813 179 EQKFVLLLDDLWQ 191 (552)
Q Consensus 179 ~k~~LlVlDdv~~ 191 (552)
+.-+|++||+..
T Consensus 202 -~~dvLiIDDiq~ 213 (445)
T PRK12422 202 -NVDALFIEDIEV 213 (445)
T ss_pred -cCCEEEEcchhh
Confidence 334788899854
No 260
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.19 E-value=0.024 Score=63.61 Aligned_cols=46 Identities=33% Similarity=0.443 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHhcc--------C-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE--------E-PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+...+.. + +..++.++|+.|+|||++|+++++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999887752 1 22478899999999999999998765
No 261
>PRK03839 putative kinase; Provisional
Probab=96.18 E-value=0.0041 Score=55.95 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999886
No 262
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.014 Score=59.12 Aligned_cols=47 Identities=28% Similarity=0.300 Sum_probs=34.9
Q ss_pred CCcccchHH---HHHHHHHHhccC--------C-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQS---QLEQVWRCLVEE--------P-AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~---~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++-|-|+ ++++|++.|.+. + .+=|-++|++|.|||-||++|+...
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 344667765 555666677652 2 3468899999999999999999876
No 263
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.16 E-value=0.021 Score=51.51 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHH
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQET 149 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 149 (552)
++.|.|.+|+|||++|.++.... ...-..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~---~~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG---LARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH---HHCCCcEEEEECCCC--HHHHHHH
Confidence 36789999999999999987765 233466888876654 4444433
No 264
>PRK06217 hypothetical protein; Validated
Probab=96.16 E-value=0.0081 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 265
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.16 E-value=0.021 Score=59.08 Aligned_cols=95 Identities=23% Similarity=0.346 Sum_probs=55.1
Q ss_pred HHHHHhccC--CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---c
Q 048813 88 QVWRCLVEE--PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---K 162 (552)
Q Consensus 88 ~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~ 162 (552)
++-+.|..+ .-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++... ++.++...+.. .
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~ 141 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLA 141 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeC
Confidence 344444432 356999999999999999999988762 23356788876553 3333222 45565432211 1
Q ss_pred cccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 163 NRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 163 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
..+.++....+. +.+.-++|+|.+..
T Consensus 142 e~~l~~i~~~i~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 142 ETNLEAILATIE---EEKPDLVVIDSIQT 167 (446)
T ss_pred CCCHHHHHHHHH---hhCCCEEEEechhh
Confidence 123333333332 23556899999743
No 266
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.15 E-value=0.012 Score=65.41 Aligned_cols=45 Identities=31% Similarity=0.375 Sum_probs=37.0
Q ss_pred cccchHHHHHHHHHHhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|.++.++.|.+.+.. ....++.++|++|+|||++|+.+++..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 367999999998886541 234589999999999999999999876
No 267
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.0086 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 268
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.12 E-value=0.015 Score=60.11 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=45.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILK 178 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 178 (552)
.-+.|+|..|+|||.|++++++.. .....-..+++++ ..++...+...++... .....+.+.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHhc
Confidence 568999999999999999999865 2112223444443 3456666666553210 12223334343
Q ss_pred cceEEEEEccccc
Q 048813 179 EQKFVLLLDDLWQ 191 (552)
Q Consensus 179 ~k~~LlVlDdv~~ 191 (552)
. .-+||+||+..
T Consensus 206 ~-~dvLiIDDiq~ 217 (450)
T PRK14087 206 Q-NDVLIIDDVQF 217 (450)
T ss_pred c-CCEEEEecccc
Confidence 3 34788999954
No 269
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0093 Score=57.56 Aligned_cols=44 Identities=32% Similarity=0.472 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+=|.++++++|.+...- +..+=|-+||++|.|||-||++|+++.
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 66889999999887641 356678999999999999999999986
No 270
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.069 Score=53.02 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
+.+++.|+|+.|+||||++..++... ...-..+.+|++.... ...+-++..+..++.+-. ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l---~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL---LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999988765 2223456677765432 223445556666665332 22344444444433
Q ss_pred Hhc-cceEEEEEcccc
Q 048813 176 ILK-EQKFVLLLDDLW 190 (552)
Q Consensus 176 ~l~-~k~~LlVlDdv~ 190 (552)
.-. +..-++++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 221 334577778763
No 271
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.12 E-value=0.036 Score=52.92 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL 141 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~ 141 (552)
.-.++.|.|.+|+|||++|.+++... ...-..+++++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVESPA 76 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCCc
Confidence 45689999999999999999976654 2335678888877543
No 272
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.041 Score=56.97 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
...+|+|+|.+|+||||++..++... ........+..++..... ...+.+......++..-. ...+..+....+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-
Confidence 35799999999999999999988765 212223445555543211 122233333344443221 1122233333333
Q ss_pred HhccceEEEEEcccc
Q 048813 176 ILKEQKFVLLLDDLW 190 (552)
Q Consensus 176 ~l~~k~~LlVlDdv~ 190 (552)
.+.+ .-+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4477888763
No 273
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.12 E-value=0.022 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998875
No 274
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.11 E-value=0.018 Score=56.79 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
..-+.++|..|+|||.||.++++.. ......++++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l---~~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKEL---LDRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH---HHCCCeEEEEEHH
Confidence 3779999999999999999999987 2233456666543
No 275
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0024 Score=35.07 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=6.8
Q ss_pred CcEEeccCCCCcccchh
Q 048813 457 LQHLDLSESDIEELPGE 473 (552)
Q Consensus 457 L~~L~l~~~~l~~lp~~ 473 (552)
|++|++++|+++++|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 33444444444444433
No 276
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.05 E-value=0.048 Score=54.00 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhc--cc-CCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc-------ccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLE--ST-TNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW-------KNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 166 (552)
...++-|+|.+|+|||++|..++-.... .. ..-..++||+....++.+.+. +|++.++...... ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 4568899999999999999877644211 01 112379999999988887654 5566665433110 11223
Q ss_pred HHHHHHHH---HHh-ccceEEEEEcccc
Q 048813 167 EQKALDIF---RIL-KEQKFVLLLDDLW 190 (552)
Q Consensus 167 ~~~~~~l~---~~l-~~k~~LlVlDdv~ 190 (552)
++....+. ..+ ..+--|||+|-+-
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 33332222 223 2345588888873
No 277
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.05 E-value=0.0056 Score=55.43 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 278
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.046 Score=57.09 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+..+... .+.++|+.|+||||+|+.++...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44889999999999999876554 46789999999999999988765
No 279
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.03 E-value=0.013 Score=48.20 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=33.0
Q ss_pred ccchHHHHHHHHHHhc----c---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV----E---EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|..-..+.|.+.+. + ++.-|++.+|.+|+|||.+|+.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5676666666655553 3 356799999999999999988888774
No 280
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.02 E-value=0.012 Score=49.33 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 84 SQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 84 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++.+++-+.|.. ....+|.+.|.-|+||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344455444443 234699999999999999999999875
No 281
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.02 E-value=0.022 Score=59.19 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=35.0
Q ss_pred CcccchHHHHHHHHHHhc---c-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLV---E-------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~---~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+.|.+..++.+.+... . ...+-|-++|++|+|||.+|+++++..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 457888888777765321 1 234568899999999999999999875
No 282
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.01 E-value=0.014 Score=55.79 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|.|+|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999998876
No 283
>PRK05439 pantothenate kinase; Provisional
Probab=96.00 E-value=0.056 Score=52.55 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=44.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHH--HHHHcCCCCcccccccHHHHHHHH
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQET--IGEKIGLLNDTWKNRRIEQKALDI 173 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~~~~~l 173 (552)
+..-+|||.|.+|+||||+|+.+.... ........+.-++...-+.....+.. +...-|. ...-+.+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~----Pes~D~~~l~~~L 158 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF----PESYDMRALLRFL 158 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhhhhccccCCC----cccccHHHHHHHH
Confidence 456799999999999999999987754 11111223444555544433332221 1111111 1344555566566
Q ss_pred HHHhccce
Q 048813 174 FRILKEQK 181 (552)
Q Consensus 174 ~~~l~~k~ 181 (552)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 65555554
No 284
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.00 E-value=0.017 Score=59.85 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEE-EEEECCcc-CHHHHHHHHHHHcCCCC---cccccccHHHHH
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVI-WVVVSKDL-RLENIQETIGEKIGLLN---DTWKNRRIEQKA 170 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~-wv~~s~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~ 170 (552)
+.-.-..|+|.+|+|||||++.+++... ..+-++.+ .+-+++.. .+.++.+.+-..+-... +...........
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 3445789999999999999999998752 22333333 34455443 33444443311111111 000111122223
Q ss_pred HHHHHHh--ccceEEEEEcccccc
Q 048813 171 LDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 171 ~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
..+-+++ .++.+||++|++-..
T Consensus 492 i~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCchHH
Confidence 3344444 578999999998543
No 285
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.00 E-value=0.015 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 286
>PRK00625 shikimate kinase; Provisional
Probab=95.99 E-value=0.0055 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|.++||+|+||||+|+.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 287
>PRK04040 adenylate kinase; Provisional
Probab=95.98 E-value=0.0064 Score=54.94 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 288
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.081 Score=53.30 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhccc-CCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcccccccHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLEST-TNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKALDIF 174 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 174 (552)
...+|.++|..|+||||.+..++....... .+-..+..+++.... ...+-++..++.++.+-. ...+..+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999887762111 123455556655422 122335566666665432 2223333333333
Q ss_pred HHhccceEEEEEcccc
Q 048813 175 RILKEQKFVLLLDDLW 190 (552)
Q Consensus 175 ~~l~~k~~LlVlDdv~ 190 (552)
+ + .+.-++++|...
T Consensus 251 ~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 Q-S-KDFDLVLVDTIG 264 (388)
T ss_pred H-h-CCCCEEEEcCCC
Confidence 3 2 344578888874
No 289
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.22 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
=.-++|++|.|||++..++++..
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc
Confidence 46789999999999999999875
No 290
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.96 E-value=0.011 Score=55.31 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCC-CCeEEEEEECCccCHHHHHHHHHHHcCCCCcc------------c-c
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTN-FNYVIWVVVSKDLRLENIQETIGEKIGLLNDT------------W-K 162 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~-~ 162 (552)
.-.++.|.|.+|+|||++|.++.... ... -..++|++..++. ..+.+.+. .++.+-.. . .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG---LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh---hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 45799999999999999998865443 233 4678888876653 44444433 33321100 0 0
Q ss_pred -----cccHHHHHHHHHHHhcc-ceEEEEEccc
Q 048813 163 -----NRRIEQKALDIFRILKE-QKFVLLLDDL 189 (552)
Q Consensus 163 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv 189 (552)
..+.++....+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23556666677766654 4468888987
No 291
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.94 E-value=0.024 Score=61.61 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=58.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-+++-|+|.+|+||||||.+++... ...-..++|++....++. ..++++|.+.... .....++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45789999999999999998766554 234467899988777664 3667777653321 233345555555
Q ss_pred HHHhcc-ceEEEEEccccc
Q 048813 174 FRILKE-QKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~~-k~~LlVlDdv~~ 191 (552)
...++. +--|+|+|.+..
T Consensus 131 ~~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHHhhcCCCeEEEEcchhh
Confidence 555544 556899999853
No 292
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.93 E-value=0.028 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.+.|++|+||||+|+.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998876
No 293
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.92 E-value=0.031 Score=50.78 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCC--------CeEEEEEECCcc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNF--------NYVIWVVVSKDL 141 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f--------~~~~wv~~s~~~ 141 (552)
.++.|.|.+|+||||++..+..... ....| ..++|+......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~-~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA-TGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH-T---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH-hCCccCCcccccCceEEEEeccCCH
Confidence 5899999999999999988887762 22222 378888877663
No 294
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.92 E-value=0.022 Score=57.74 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-----ccccH---
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-----KNRRI--- 166 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~~--- 166 (552)
..-..++|+|..|+|||||++.+++.. ..+.++.+-+++.. ...++.+.++..-++..... +....
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 345689999999999999999998653 22566667677654 34556666544322221100 01011
Q ss_pred --HHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 167 --EQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 --~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
......+.+++ +++++|+++||+-..
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 11122244444 578999999998654
No 295
>PRK09087 hypothetical protein; Validated
Probab=95.92 E-value=0.015 Score=54.25 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+.+.|+|..|+|||+|++.+++..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999988764
No 296
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.92 E-value=0.029 Score=58.08 Aligned_cols=97 Identities=23% Similarity=0.324 Sum_probs=54.5
Q ss_pred HHHHHHHhccC--CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc--
Q 048813 86 LEQVWRCLVEE--PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW-- 161 (552)
Q Consensus 86 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 161 (552)
+..+-+.|..+ .-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++.. -+..++...+..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~---a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~ 153 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL---AKNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYV 153 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEE
Confidence 34444444432 45699999999999999999987765 222246788876543 333322 233454432211
Q ss_pred -ccccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 162 -KNRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 162 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
...+.++....+. +.+.-++|+|.+..
T Consensus 154 ~~e~~~~~I~~~i~---~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 154 LSETNWEQICANIE---EENPQACVIDSIQT 181 (454)
T ss_pred cCCCCHHHHHHHHH---hcCCcEEEEecchh
Confidence 1223333333222 23456899999844
No 297
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.92 E-value=0.032 Score=61.28 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=37.9
Q ss_pred CcccchHHHHHHHHHHhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++.|.+.+.. .....+-++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999888752 124578899999999999999998875
No 298
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.92 E-value=0.034 Score=56.65 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHc-----CCCCcccccc----cHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKI-----GLLNDTWKNR----RIE 167 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~----~~~ 167 (552)
.-..++|+|..|+|||||++.+.... .....++++.-.+..++.++....+... +.-....+.. ...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 44689999999999999999887654 2233455544323344554444333322 1100000000 011
Q ss_pred HHHHHHHHHh--ccceEEEEEcccccc
Q 048813 168 QKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 168 ~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.....+-+++ +++.+|+++||+-..
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 1122234444 478999999998554
No 299
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.91 E-value=0.034 Score=48.89 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 81 GLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|-++.++.|.+.+..+... .+-++|..|+||+++|.++++..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 6677888888888877655 57999999999999999987765
No 300
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.90 E-value=0.036 Score=56.30 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=36.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLL 157 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~ 157 (552)
...+|.++|..|+||||+|..++... . .....++.|++.... ...+-++..++..+.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l-~--~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY-Q--RKGFKPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCCEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 35799999999999999999988776 2 222345555543221 2233334455555543
No 301
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.90 E-value=0.095 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 302
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.90 E-value=0.012 Score=55.93 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|.++|++|+||||+|++++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 303
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.038 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 304
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.87 E-value=0.043 Score=57.71 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=71.9
Q ss_pred ccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhh-----cccCCCCeEEEEEECCccCHHHHHH
Q 048813 79 VIGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFL-----ESTTNFNYVIWVVVSKDLRLENIQE 148 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~-----~~~~~f~~~~wv~~s~~~~~~~~~~ 148 (552)
+=+||.+..+|.+.+.. +..+.+.|.|.+|.|||.....|-+... ..-..|+. +.|+.-.-..+.+++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHH
Confidence 45899999999887752 3445899999999999999999887542 11223443 3445445557899999
Q ss_pred HHHHHcCCCCcccccccHHHHHHHHHHHh-----ccceEEEEEccccc
Q 048813 149 TIGEKIGLLNDTWKNRRIEQKALDIFRIL-----KEQKFVLLLDDLWQ 191 (552)
Q Consensus 149 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~ 191 (552)
.|..++...... .....+.+..+. +.+.+++++|+++.
T Consensus 477 ~I~~~lsg~~~~-----~~~al~~L~~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 477 KIWEALSGERVT-----WDAALEALNFRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred HHHHhcccCccc-----HHHHHHHHHHhhccCCCCCCCEEEEeccHHH
Confidence 999999754422 122233333333 24568888898754
No 305
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.87 E-value=0.0029 Score=34.79 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=17.1
Q ss_pred CceEEEcCCCCCCcCCccccCc
Q 048813 433 SLKVLNLSYSKLTNLPVGISKV 454 (552)
Q Consensus 433 ~L~~L~l~~~~l~~lp~~~~~l 454 (552)
+|++|++++|+++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788999999888888776653
No 306
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.058 Score=58.06 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=40.0
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|...+..+.. ..+-++|..|+||||+|+.+++..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4488999999999999987653 577899999999999999998886
No 307
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.87 E-value=0.059 Score=50.47 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIG 155 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 155 (552)
...++.|.|.+|+||||+|.+++... ...-..+++++... +..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~---~~~g~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF---LQNGYSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH---HhCCCcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 34699999999999999986665543 12224567776443 345555555 3344
No 308
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.87 E-value=0.014 Score=56.97 Aligned_cols=49 Identities=29% Similarity=0.339 Sum_probs=36.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQET 149 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 149 (552)
.+++.+.|.||+||||+|.+.+-.. ......++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l---A~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL---AESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH---HHcCCcEEEEEeCCCCchHhhhcc
Confidence 5789999999999999999866655 223355788888777777766554
No 309
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.86 E-value=0.0061 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998874
No 310
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.045 Score=54.33 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHHhcc-CCCeE-EEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVE-EPAGI-VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|-+....++..+..+ ++... +-++|++|+||||+|.++++..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 56777788888877763 44555 9999999999999999998876
No 311
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.85 E-value=0.0061 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.680 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876
No 312
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.022 Score=61.51 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=63.0
Q ss_pred CcccchHHHHHHHHHHhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHH
Q 048813 77 PTVIGLQSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQ 147 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 147 (552)
..++|.+..++.+.+.+.. .+..+.-..|+.|||||.||++++... .+.=+..+-++ +.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~D------MSEy~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRID------MSEYM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeec------hHHHH
Confidence 4589999999999988752 245577889999999999999998876 22223333333 33333
Q ss_pred H--HHHHHcCCCCcccccccHHHHHHHHHHHhccceE-EEEEcccccc
Q 048813 148 E--TIGEKIGLLNDTWKNRRIEQKALDIFRILKEQKF-VLLLDDLWQR 192 (552)
Q Consensus 148 ~--~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 192 (552)
. .+.+-+|.+. .+...+. --.+-+..+.++| ++.||++...
T Consensus 562 EkHsVSrLIGaPP-GYVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 562 EKHSVSRLIGAPP-GYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHHHhCCCC-CCceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 2 2233334332 2222221 1234455677777 7777998643
No 313
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.84 E-value=0.0062 Score=54.94 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 314
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.042 Score=50.73 Aligned_cols=45 Identities=31% Similarity=0.397 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+=|=.+++++|++...- +...=|.++|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 355778888888775431 355678899999999999999999986
No 315
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.83 E-value=0.014 Score=57.57 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.++.+..+.-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4589999999998887777666678899999999999999997654
No 316
>PRK05973 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.058 Score=50.34 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETI 150 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 150 (552)
.-.++.|.|.+|+|||++|.+++... ...-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~---a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA---MKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEEEeCC--HHHHHHHH
Confidence 44699999999999999999987665 233456778776654 34444443
No 317
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.82 E-value=0.0062 Score=55.72 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997753
No 318
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.82 E-value=0.0091 Score=55.66 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|.|++|+||||+|+.++..+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 319
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0082 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|-||=|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 320
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.81 E-value=0.0081 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 321
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.81 E-value=0.017 Score=61.87 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=56.0
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcC
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIG 155 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 155 (552)
..++|.++.++.|...+... +.+.++|.+|+||||+|+.+++.. ....++..+|..- ...+...+++.+..++|
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 44889999999888877665 478999999999999999998875 2334677788655 33356667777776655
No 322
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.051 Score=57.72 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|-+..++.+...+..+... .+.++|+.|+||||+|+.+++..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45889999999999999876554 57899999999999999998875
No 323
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.78 E-value=0.016 Score=52.71 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE 144 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 144 (552)
.|+|+|-||+||||+|..++... . .++-..++=|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~-~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-L-SKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-H-hcCCceEEEEeCCCCCChH
Confidence 58999999999999999966665 2 2222445566777666655
No 324
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.78 E-value=0.048 Score=51.70 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=59.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhc-ccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-----ccccH---
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLE-STTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-----KNRRI--- 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~~--- 166 (552)
.-.-++|.|-.|+|||+|+..+.++... .+.+-+.++++-+++.. ...++.+++...=.+..... +....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4467899999999999999998877510 12235788899888765 45566666655322211100 01111
Q ss_pred --HHHHHHHHHHhc---cceEEEEEcccccc
Q 048813 167 --EQKALDIFRILK---EQKFVLLLDDLWQR 192 (552)
Q Consensus 167 --~~~~~~l~~~l~---~k~~LlVlDdv~~~ 192 (552)
......+-++++ ++++|+++||+...
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 111223455553 68999999998554
No 325
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.073 Score=55.81 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||-+..++.+...+..+... ++.++|..|+||||+|+.+++..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 44889999999999999877655 56899999999999999887764
No 326
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.74 E-value=0.017 Score=61.14 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=38.9
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+...+......-+.|+|.+|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3488999999999988766655677899999999999999998653
No 327
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.74 E-value=0.026 Score=62.38 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.++.++.|..+|.. ....++.++|++|+||||+|+.++...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3367999999999887752 245689999999999999999999865
No 328
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.73 E-value=0.01 Score=54.20 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH-HHHHHHHHHcCCCCcccccccHHHHHHHHHHHh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE-NIQETIGEKIGLLNDTWKNRRIEQKALDIFRIL 177 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 177 (552)
.+|.|.|+.|+||||++..+.+.. .......++.- ..+.... .-...+..+-.. ..+.......+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQREV------GLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeeccc------CCCccCHHHHHHHHh
Confidence 478999999999999999887765 22333333332 2221100 000001100000 011122344566777
Q ss_pred ccceEEEEEcccccccccc
Q 048813 178 KEQKFVLLLDDLWQRVDLV 196 (552)
Q Consensus 178 ~~k~~LlVlDdv~~~~~~~ 196 (552)
+...=.+++|++.+.+.+.
T Consensus 72 r~~pd~ii~gEird~e~~~ 90 (198)
T cd01131 72 RQDPDVILVGEMRDLETIR 90 (198)
T ss_pred cCCcCEEEEcCCCCHHHHH
Confidence 7667799999997665443
No 329
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.73 E-value=0.049 Score=53.51 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+..+++ ...-++|..|+||+++|.++++..
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988764 688999999999999998887765
No 330
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.73 E-value=0.0058 Score=50.43 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhcccCCCC
Q 048813 101 VGLYGMGGVGKTTLLTHINNKFLESTTNFN 130 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~~~~~~~f~ 130 (552)
|-|+|.+|+||||+|++++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6789999999999999999876 45554
No 331
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.053 Score=58.02 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..++.|.+.+..+.+. .+.++|..|+||||+|+.+++..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999999999877654 56899999999999999988775
No 332
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.72 E-value=0.032 Score=61.85 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++..
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 377888888888776531 134458889999999999999999875
No 333
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.025 Score=51.76 Aligned_cols=44 Identities=32% Similarity=0.430 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHhc-------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV-------------EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+=|.+-..+++.+... -+..+=|.++|++|.|||.||++|+++.
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 5678888888877653 1467788999999999999999999986
No 334
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.079 Score=56.49 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=39.6
Q ss_pred CCcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.+..++.+.+.+..+.. ..+-++|+.|+||||+|+.++...
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35589999999999999987654 456789999999999999998765
No 335
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.70 E-value=0.032 Score=56.75 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc
Q 048813 81 GLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT 160 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 160 (552)
-|..-+.++.+.+..... ++.|.|+-++||||+++.+.... .+. .+++...+......
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~--------------- 78 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRI--------------- 78 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchh---------------
Confidence 344555566665554444 99999999999999997776554 122 45554332211110
Q ss_pred cccccHHHHHHHHHHHhccceEEEEEcccccccccccccccCCCCCCCccchHH
Q 048813 161 WKNRRIEQKALDIFRILKEQKFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD 214 (552)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T 214 (552)
...+....+...-..++..++||.|....+|+.....+.+.++. ++++|
T Consensus 79 ----~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~it 127 (398)
T COG1373 79 ----ELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLIT 127 (398)
T ss_pred ----hHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEE
Confidence 00111111111111277899999999999988766666555554 55544
No 336
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.69 E-value=0.0099 Score=53.17 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998764
No 337
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.69 E-value=0.0091 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+++|.|++|+||||+|+.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998765
No 338
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.63 E-value=0.0088 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|.|.|.+|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 339
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.63 E-value=0.0089 Score=53.01 Aligned_cols=42 Identities=24% Similarity=0.182 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhccc-CCCCeEEEEEECCccC
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLEST-TNFNYVIWVVVSKDLR 142 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~~f~~~~wv~~s~~~~ 142 (552)
..++-+.|+.|+|||.+|++++... . +.....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 4678899999999999999999887 4 4555666666664433
No 340
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.63 E-value=0.033 Score=57.13 Aligned_cols=94 Identities=20% Similarity=0.305 Sum_probs=58.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc----cccc------
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW----KNRR------ 165 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~----~~~~------ 165 (552)
.-.-++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. ...++.+.+...-.+..... ...+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 446899999999999999999888762 2356788888777654 45566666655322211100 0111
Q ss_pred HHHHHHHHHHHh---ccceEEEEEcccccc
Q 048813 166 IEQKALDIFRIL---KEQKFVLLLDDLWQR 192 (552)
Q Consensus 166 ~~~~~~~l~~~l---~~k~~LlVlDdv~~~ 192 (552)
.......+.+++ +++++|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 111223345555 278999999998543
No 341
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.015 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.++||+|.+|+||||||+.++.-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44689999999999999999998765
No 342
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.62 E-value=0.015 Score=56.77 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQE 148 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 148 (552)
+++.+.|-||+||||+|.+.+-... ..-..++-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A---~~G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA---RRGKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH---HTTS-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh---hCCCCeeEeecCCCccHHHHhC
Confidence 6899999999999999988777652 2334566666666655555443
No 343
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.62 E-value=0.04 Score=50.67 Aligned_cols=91 Identities=22% Similarity=0.373 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCCCCcc-----cccccHHH--
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGLLNDT-----WKNRRIEQ-- 168 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~-- 168 (552)
.-.-++|.|.+|+|||+|+..+.+.. .-+.++++.+++. ....++.+++...-.+.... .+......
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 34689999999999999999998875 2345588888865 35666666665431111100 00111111
Q ss_pred ---HHHHHHHHh--ccceEEEEEcccccc
Q 048813 169 ---KALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 169 ---~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
..-.+.+++ +++.+|+++||+...
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhHHH
Confidence 111223333 589999999998443
No 344
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.62 E-value=0.08 Score=55.59 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=59.4
Q ss_pred HHHHHHhccC--CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---
Q 048813 87 EQVWRCLVEE--PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW--- 161 (552)
Q Consensus 87 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--- 161 (552)
..+-+.|..+ .-.++.|.|.+|+||||||.+++... ...-..++++...+. ..++...+ +.++.+-..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA---CANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhC
Confidence 3444444432 45799999999999999999987765 334567788776654 44454443 4555432110
Q ss_pred ----------ccccHHHHHHHHHHHhcc-ceEEEEEccc
Q 048813 162 ----------KNRRIEQKALDIFRILKE-QKFVLLLDDL 189 (552)
Q Consensus 162 ----------~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 189 (552)
.....++....+.+.+.. +.-.+|+|.+
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 112235556666666644 4457888887
No 345
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.61 E-value=0.0089 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999997763
No 346
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.61 E-value=0.047 Score=55.65 Aligned_cols=94 Identities=24% Similarity=0.376 Sum_probs=59.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-----cccc-----
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-----KNRR----- 165 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~----- 165 (552)
.-.-++|.|.+|+|||+|+..+.+.. . +.+-+.++++-+++.. ...++.+.+...=.+..... +...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 44678999999999999999988775 2 2334788888887655 35566666655322211100 0111
Q ss_pred HHHHHHHHHHHhc---cceEEEEEcccccc
Q 048813 166 IEQKALDIFRILK---EQKFVLLLDDLWQR 192 (552)
Q Consensus 166 ~~~~~~~l~~~l~---~k~~LlVlDdv~~~ 192 (552)
.......+.++++ ++++|+++||+-..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1122333556654 58999999998654
No 347
>PRK13947 shikimate kinase; Provisional
Probab=95.61 E-value=0.0099 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999875
No 348
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.60 E-value=0.018 Score=52.71 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+|+|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998865
No 349
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.60 E-value=0.019 Score=48.25 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENI 146 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 146 (552)
.-|.|.|.+|+||||+|..++... ..-|+++|+-..-.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l 47 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISDLVKENNL 47 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhhHHhhhcc
Confidence 468899999999999999998543 2346677654433333
No 350
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.59 E-value=0.057 Score=55.23 Aligned_cols=94 Identities=20% Similarity=0.339 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-----cccccH----
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDT-----WKNRRI---- 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~---- 166 (552)
.-.-++|.|.+|+|||||+.++..... ..+=+.++++-+++.. ...++.+.+...=.+.... .+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446799999999999999999877652 1222467777777654 4566777666542221110 011111
Q ss_pred -HHHHHHHHHHh---ccceEEEEEcccccc
Q 048813 167 -EQKALDIFRIL---KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 -~~~~~~l~~~l---~~k~~LlVlDdv~~~ 192 (552)
......+-+++ +++++|+++|++-..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 12233355655 568999999998553
No 351
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.59 E-value=0.032 Score=56.60 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=51.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC-ccCHHHHHHHHHHHcCCCCccc-----ccccH----
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK-DLRLENIQETIGEKIGLLNDTW-----KNRRI---- 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-----~~~~~---- 166 (552)
.-..++|+|..|+|||||++.+.... .....++ +.+++ .....++.+..+..-++..... +....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi-~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVI-ALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEE-EEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 44689999999999999999988764 2222333 33333 3345556555444322221100 01111
Q ss_pred -HHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 167 -EQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 -~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
......+.+++ +++++|+++||+-..
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11122344544 578999999998554
No 352
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.56 E-value=0.072 Score=47.10 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=46.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhcc
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILKE 179 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 179 (552)
++.|.|.+|+|||++|.++... ....++++..++.++.+ +.+.|...-......+... +....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~---E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI---ETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe---ecHHHHHHHHHh
Confidence 3678999999999999998654 22467778777777653 5555444322223223332 222333333321
Q ss_pred --ceEEEEEccc
Q 048813 180 --QKFVLLLDDL 189 (552)
Q Consensus 180 --k~~LlVlDdv 189 (552)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2336888886
No 353
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.56 E-value=0.029 Score=53.84 Aligned_cols=89 Identities=24% Similarity=0.338 Sum_probs=47.8
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccH
Q 048813 87 EQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRI 166 (552)
Q Consensus 87 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 166 (552)
..+.+.+...+ +-+-++|..|+|||++++...+.. . ...| ...-++.+...+...+++.+-..+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------ 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC------
Confidence 34445555443 677999999999999999987654 1 1121 234455555444444443322222110000
Q ss_pred HHHHHHHHHHhccceEEEEEccccc
Q 048813 167 EQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 167 ~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
...--.+|+.++.+||+.-
T Consensus 93 ------~~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 93 ------VYGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp ------EEEEESSSEEEEEEETTT-
T ss_pred ------CCCCCCCcEEEEEecccCC
Confidence 0000146888899999853
No 354
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.56 E-value=0.017 Score=52.01 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEE
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVV 136 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~ 136 (552)
.++|.|+|+.|+|||||++.+.... ...|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999876 56675444443
No 355
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.55 E-value=0.036 Score=52.15 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=42.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC--HHHHHHHHHHH----cCCCCcccccccHHHHHHHH
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR--LENIQETIGEK----IGLLNDTWKNRRIEQKALDI 173 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~----l~~~~~~~~~~~~~~~~~~l 173 (552)
+|+|.|.+|+||||+|+++.+.. ...-..+..++...-+. -...-+.+... .+...-..+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l---~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF---AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 58999999999999999988765 12222344454333222 22222222222 22222112344556666666
Q ss_pred HHHhccce
Q 048813 174 FRILKEQK 181 (552)
Q Consensus 174 ~~~l~~k~ 181 (552)
+...+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 66555443
No 356
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.55 E-value=0.027 Score=53.85 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=56.0
Q ss_pred chHHH-HHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCc
Q 048813 81 GLQSQ-LEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLND 159 (552)
Q Consensus 81 Gr~~~-~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 159 (552)
|.... ++.+..++ ...-.+|.|.|..|+||||+++++.+.. ...-..++.+.-...+....+ .++...
T Consensus 63 g~~~~~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~~-----~q~~v~-- 131 (264)
T cd01129 63 GLKPENLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPGI-----NQVQVN-- 131 (264)
T ss_pred CCCHHHHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCCc-----eEEEeC--
Confidence 54433 34444444 4445689999999999999999887665 121123333321211111110 011111
Q ss_pred ccccccHHHHHHHHHHHhccceEEEEEcccccccccc
Q 048813 160 TWKNRRIEQKALDIFRILKEQKFVLLLDDLWQRVDLV 196 (552)
Q Consensus 160 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~ 196 (552)
..........+...|+...-.++++++.+.+...
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 0111123455677778888899999998876544
No 357
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.53 E-value=0.048 Score=58.63 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=49.5
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcC
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIG 155 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 155 (552)
..++|.++.++.+...+.... .+.++|++|+||||+|+++++... ...|...+++.-. ..+...++..+...++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 447899999998888777653 566999999999999999998762 2233333333222 2234445666665554
No 358
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.03 Score=56.81 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=49.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHH--
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIF-- 174 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-- 174 (552)
+...+.+.|++|+|||+||..++.. ..|.++--++... ....++......+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~---------------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPED---------------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHH---------------------ccCccHHHHHHHHHHH
Confidence 4556788999999999999998765 4666543332111 01112222222333
Q ss_pred --HHhccceEEEEEcccccccccccccccC
Q 048813 175 --RILKEQKFVLLLDDLWQRVDLVKVGVPL 202 (552)
Q Consensus 175 --~~l~~k~~LlVlDdv~~~~~~~~~~~~~ 202 (552)
..-+..--.||+||+....+|-.++..+
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRf 620 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRF 620 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchh
Confidence 3334556789999998888887766544
No 359
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.50 E-value=0.064 Score=50.71 Aligned_cols=99 Identities=11% Similarity=0.130 Sum_probs=56.7
Q ss_pred ccchHHHHHHHHHHhc----c---CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHH
Q 048813 79 VIGLQSQLEQVWRCLV----E---EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIG 151 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 151 (552)
++|..-..+.|+..+. + .+.-+++.+|..|.||.-+|+.++++.-+...+ ........
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~---------------S~~V~~fv 148 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR---------------SPFVHHFV 148 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc---------------chhHHHhh
Confidence 5676666666666554 2 356699999999999999999998886211111 11222333
Q ss_pred HHcCCCCcccccccHHHHHHHHHHHhc-cceEEEEEcccccc
Q 048813 152 EKIGLLNDTWKNRRIEQKALDIFRILK-EQKFVLLLDDLWQR 192 (552)
Q Consensus 152 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~ 192 (552)
.....+.......=.+++...++..++ -+|-|.|+|+|+..
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 333333221111111233333444333 37899999999764
No 360
>PRK08149 ATP synthase SpaL; Validated
Probab=95.49 E-value=0.068 Score=54.29 Aligned_cols=91 Identities=12% Similarity=0.201 Sum_probs=53.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCCCCccc-----cccc-----
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGLLNDTW-----KNRR----- 165 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-----~~~~----- 165 (552)
.-..++|+|..|+|||||++.+++.. .-+.++...+... .+..++..+...........+ +...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 44689999999999999999998754 2234444445433 345566666665433211100 1111
Q ss_pred HHHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 166 IEQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 166 ~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.......+.+++ ++|++|+++||+-..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 111222334444 578999999998654
No 361
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.49 E-value=0.068 Score=54.81 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=48.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC-HHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR-LENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
.+++.++|++|+||||++..++... ........+..|+....-. ..+.+....+.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4689999999999999998887765 2112334566676544211 12223333444554332 12223333333333
Q ss_pred hccceEEEEEccc
Q 048813 177 LKEQKFVLLLDDL 189 (552)
Q Consensus 177 l~~k~~LlVlDdv 189 (552)
+.+ .-++++|..
T Consensus 297 ~~~-~DlVlIDt~ 308 (424)
T PRK05703 297 LRD-CDVILIDTA 308 (424)
T ss_pred hCC-CCEEEEeCC
Confidence 332 457777865
No 362
>PRK15453 phosphoribulokinase; Provisional
Probab=95.45 E-value=0.085 Score=50.17 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|.|.+|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998654
No 363
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.44 E-value=0.035 Score=53.21 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=41.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIG 155 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 155 (552)
.-+++.|+|.+|+|||++|.++.... ...+..++||+..+. ..++.+.+.+ ++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 55799999999999999999988876 455889999998875 4445554444 54
No 364
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.44 E-value=0.092 Score=51.48 Aligned_cols=92 Identities=21% Similarity=0.265 Sum_probs=52.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC-CccCHHHHHHHHHHHcCCCCcc-----cccccH---
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS-KDLRLENIQETIGEKIGLLNDT-----WKNRRI--- 166 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~--- 166 (552)
..-..++|+|..|+|||||++.+.+.. . -+..+..-++ +..+..++.......-++.... .+....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT---T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 344689999999999999999998765 1 2333444444 3345566666555543321110 011111
Q ss_pred --HHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 167 --EQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 --~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
......+.+++ ++|.+|+++||+-..
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 11122233443 578999999998554
No 365
>PRK13949 shikimate kinase; Provisional
Probab=95.43 E-value=0.012 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+-|.|+|+.|+||||+|+.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999876
No 366
>PRK06620 hypothetical protein; Validated
Probab=95.43 E-value=0.031 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.073 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.+.|||++|+|||+||+++++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 669999999999999999987764
No 367
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.40 E-value=0.023 Score=56.26 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=40.4
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.++.+..|...+.+....-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4489999999999888888777777899999999999999997765
No 368
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.40 E-value=0.073 Score=54.19 Aligned_cols=91 Identities=14% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc----ccc-cH----
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW----KNR-RI---- 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~----~~~-~~---- 166 (552)
.-..++|+|..|+|||||++.+++.. .-+.++++-+++.. ...++.+..+..-++..... ... ..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998764 12455566666543 34455554444322211100 011 11
Q ss_pred -HHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 167 -EQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 -~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
......+.+++ +++.+|+++||+-..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 11122244444 578999999998554
No 369
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.39 E-value=0.013 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|+|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998754
No 370
>PRK05922 type III secretion system ATPase; Validated
Probab=95.39 E-value=0.048 Score=55.42 Aligned_cols=92 Identities=14% Similarity=0.244 Sum_probs=51.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCCCCccc--cccc-------
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGLLNDTW--KNRR------- 165 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~--~~~~------- 165 (552)
..-..++|+|..|+|||||.+.+.+.. . .+....+-+++. ....+.+.+...........+ ...+
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 344679999999999999999998764 2 233344444433 233445544444332221110 0011
Q ss_pred -HHHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 166 -IEQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 166 -~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.......+.+++ +++++|+++||+-..
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 111122344444 578999999998654
No 371
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.38 E-value=0.053 Score=51.94 Aligned_cols=55 Identities=27% Similarity=0.302 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHH
Q 048813 84 SQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENI 146 (552)
Q Consensus 84 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 146 (552)
+.++++...+..+ .-|-+.|.+|+|||++|++++... . ...+.++++...+..++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g---~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---D---RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---C---CCEEEEeCCccCCHHHH
Confidence 3445555555444 456689999999999999998743 1 23345555554444443
No 372
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.38 E-value=0.095 Score=48.47 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=35.6
Q ss_pred CcccchHHHHHHH---HHHhccC------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQV---WRCLVEE------PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l---~~~L~~~------~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.++.+.+- .+.|.+. ..+-|..+|++|.|||.+|+++++..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 3478998876653 4445442 45789999999999999999999986
No 373
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.38 E-value=0.015 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 374
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.38 E-value=0.026 Score=51.29 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEE
Q 048813 82 LQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVV 136 (552)
Q Consensus 82 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~ 136 (552)
+..+-....+.|. ...++.+.|++|.|||.||.+.+-+. -..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 3444445555555 44699999999999999998888775 4458899888875
No 375
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.36 E-value=0.035 Score=51.69 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=35.8
Q ss_pred HHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHH
Q 048813 86 LEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENI 146 (552)
Q Consensus 86 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 146 (552)
..++.+.+.. ++..+|||.|.+|+|||||..++.... ...++==.++=|+-|.+++--.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcc
Confidence 3344444443 567899999999999999999988876 32333335566666666654443
No 376
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.36 E-value=0.029 Score=47.96 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
++|.|+|..|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4799999999999999999999872 34555555555554
No 377
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.36 E-value=0.013 Score=50.98 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|+|++|+||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 378
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.12 Score=52.64 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCCCC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGLLN 158 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~ 158 (552)
...+|+++|..|+||||++..++... ......+.+..+..... ....+-+...++.++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 34699999999999999999887754 11222234444443321 122333455566666543
No 379
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.36 E-value=0.014 Score=49.73 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998764
No 380
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.014 Score=50.62 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 048813 100 IVGLYGMGGVGKTTLLTHIN 119 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~ 119 (552)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999986
No 381
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.35 E-value=0.056 Score=47.86 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEK 153 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 153 (552)
.++.|.|.+|+||||+|..+.... .. .++++.....++ .++.+.|...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~~~~-~e~~~ri~~h 49 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQPFD-DEMAARIAHH 49 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCCCCh-HHHHHHHHHH
Confidence 368999999999999999987664 11 234454444433 3455555443
No 382
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.34 E-value=0.023 Score=50.24 Aligned_cols=69 Identities=19% Similarity=0.120 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHH
Q 048813 79 VIGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIG 151 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 151 (552)
+||.+..+.++.+.+.. ....-|-|+|-.|+||+.+|+.+++.. ...-...+-|+++.- +.+.+-.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~-~~~~~e~~LF 71 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAAL-PEELLESELF 71 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS--HHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhh-hcchhhhhhh
Confidence 46777778888776653 233567799999999999999998864 222233445555533 3333444444
No 383
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.34 E-value=0.019 Score=52.87 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=27.4
Q ss_pred HHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 91 RCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 91 ~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.+...++++|+++|..|+|||||.+++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455689999999999999999999998774
No 384
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.34 E-value=0.085 Score=48.26 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHH----hccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRC----LVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~----L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.|...+.+.+- +......-|-+||.-|.|||+|.+++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 3478998888887653 233466789999999999999999999987
No 385
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.34 E-value=0.028 Score=56.09 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++..+.+...+..+... .+.|+|..|+||||+|..+++..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 44899999999999999877543 58899999999999999998876
No 386
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.32 E-value=0.016 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 387
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.046 Score=57.11 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=55.8
Q ss_pred ccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHH
Q 048813 79 VIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLEN 145 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 145 (552)
+=|.|+.+.+|.+...- ...+=|-.+|++|+|||++|+++++.. .-.|- .+..+ +
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFl-----svkgp----E 503 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFL-----SVKGP----E 503 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCee-----eccCH----H
Confidence 54588888888765531 356778999999999999999999986 44442 22211 1
Q ss_pred HHHHHHHHcCCCCcccccccHHHHHHHHHHHhccceEEEEEcccccc
Q 048813 146 IQETIGEKIGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 146 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
+ +... ...++.......++.-+--.+++.||.++..
T Consensus 504 L----~sk~-------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi 539 (693)
T KOG0730|consen 504 L----FSKY-------VGESERAIREVFRKARQVAPCIIFFDEIDAL 539 (693)
T ss_pred H----HHHh-------cCchHHHHHHHHHHHhhcCCeEEehhhHHhH
Confidence 1 1111 1222333333344444556799999998543
No 388
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.31 E-value=0.016 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999998876
No 389
>PRK14530 adenylate kinase; Provisional
Probab=95.31 E-value=0.014 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998775
No 390
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.064 Score=55.48 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=44.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRIL 177 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 177 (552)
..=|-+||++|+|||-||++|+|.. .-+| +++-.+ +++.+-. ..++.......++.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV-----------GESErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV-----------GESERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh-----------hhHHHHHHHHHHHhh
Confidence 3457899999999999999999986 4455 222221 2222211 112222333344555
Q ss_pred ccceEEEEEcccccc
Q 048813 178 KEQKFVLLLDDLWQR 192 (552)
Q Consensus 178 ~~k~~LlVlDdv~~~ 192 (552)
..-.|.|.+|.++..
T Consensus 602 ~saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDAL 616 (802)
T ss_pred cCCCeEEEecchhhc
Confidence 667899999998543
No 391
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.00085 Score=62.10 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=38.1
Q ss_pred cceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCc-hhhcCCCCceEEEcCCC
Q 048813 375 GLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPN-DFFQFMPSLKVLNLSYS 442 (552)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~ 442 (552)
++.++.-...++.+..|+|+-|.+..+..+..|.+|..|+|..|.+..+.. ..+.++++||.|=|..|
T Consensus 30 ~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 30 GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 333444444556666666666666666666666666666666666554432 12344555555555444
No 392
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.28 E-value=0.095 Score=52.54 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHH-HHHHhhhhcccCCCCeEEEEEECCcc---CHHHHHHHHHHHcCC
Q 048813 82 LQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLL-THINNKFLESTTNFNYVIWVVVSKDL---RLENIQETIGEKIGL 156 (552)
Q Consensus 82 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~~~~wv~~s~~~---~~~~~~~~i~~~l~~ 156 (552)
|.+.+++|..||.+..-..|.|.|+-|+||+.|. .++.++. ..++.+++.+-. +-..+...++.++|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5678899999999887789999999999999999 6666553 227777765432 345566777777664
No 393
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.27 E-value=0.08 Score=53.86 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhc----------ccCCCCeEEEEEECCccCHHHHHHHHHHHcC-CCCccc----
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLE----------STTNFNYVIWVVVSKDLRLENIQETIGEKIG-LLNDTW---- 161 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~----------~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~---- 161 (552)
.-.-++|.|-.|+|||||+..+.+.... .++.-..++++-+++.....+.....+..-+ +.....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 4467899999999999999999887510 0001116677778887666666655555544 221100
Q ss_pred -ccccHH-----HHHHHHHHHhc---cceEEEEEcccccc
Q 048813 162 -KNRRIE-----QKALDIFRILK---EQKFVLLLDDLWQR 192 (552)
Q Consensus 162 -~~~~~~-----~~~~~l~~~l~---~k~~LlVlDdv~~~ 192 (552)
+..... .....+.++++ ++++|+++||+-..
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 111111 11223555555 58999999998543
No 394
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.27 E-value=0.027 Score=55.59 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.+.+-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4588999999988766554444569999999999999999997664
No 395
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.26 E-value=0.034 Score=52.56 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=41.7
Q ss_pred HHHHHhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHH
Q 048813 88 QVWRCLV--EEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQ 147 (552)
Q Consensus 88 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 147 (552)
++...+. .++..+|||.|.||+|||||.-++-... ...++==.++=|+-|.+++--.++
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 3444443 3677899999999999999999888776 334444466667777777655544
No 396
>PRK13948 shikimate kinase; Provisional
Probab=95.25 E-value=0.018 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+.|.++|+.|+||||+++.+++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998875
No 397
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.23 E-value=0.083 Score=54.28 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHhhhhcc-----cCCCCeEEEEEECCccCHHHHHHHHHHHcC-CCCccc-----ccc
Q 048813 97 PAGIVGLYGMGGVGKTTLL-THINNKFLES-----TTNFNYVIWVVVSKDLRLENIQETIGEKIG-LLNDTW-----KNR 164 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~-----~~~ 164 (552)
.-.-++|.|-.|+|||+|| ..+.++. .+ .+.-+.++++-+++..+--.-..+.+++-+ +..... +..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 4457899999999999997 5566653 11 134467889999887643322333333333 111100 011
Q ss_pred cHHH-----HHHHHHHHh--ccceEEEEEcccccc
Q 048813 165 RIEQ-----KALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 165 ~~~~-----~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
...+ ....+-+++ +++.+|+|+||+...
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1111 112233444 578999999998654
No 398
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.23 E-value=0.073 Score=45.79 Aligned_cols=26 Identities=42% Similarity=0.740 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|.|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44699999999999999999998765
No 399
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.20 E-value=0.11 Score=50.23 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGE 152 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 152 (552)
...++.|.|.+|+||||+|.+++.... ..+-..++|++...+ ..++...+..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHH
Confidence 346889999999999999999877651 222467889887664 3445555444
No 400
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.20 E-value=0.013 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 401
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.19 E-value=0.061 Score=56.95 Aligned_cols=75 Identities=25% Similarity=0.243 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILK 178 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 178 (552)
..+.|+|..|+|||.|++++++.. .....-..+++++. .++..++...+.. .. ...+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a-~~~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA-RRLYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 458999999999999999999986 21112234556543 3344444443321 01 112233333
Q ss_pred cceEEEEEcccccc
Q 048813 179 EQKFVLLLDDLWQR 192 (552)
Q Consensus 179 ~k~~LlVlDdv~~~ 192 (552)
+ --+||+||+...
T Consensus 377 ~-~DLLlIDDIq~l 389 (617)
T PRK14086 377 E-MDILLVDDIQFL 389 (617)
T ss_pred c-CCEEEEehhccc
Confidence 3 247888998643
No 402
>PRK14527 adenylate kinase; Provisional
Probab=95.19 E-value=0.019 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.|+|++|+||||+|+.+++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998775
No 403
>PRK13975 thymidylate kinase; Provisional
Probab=95.18 E-value=0.018 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|+|.|+.|+||||+|+.++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999886
No 404
>PF13245 AAA_19: Part of AAA domain
Probab=95.17 E-value=0.065 Score=40.25 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=17.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
+-+++.|.|.+|.|||+++.+....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468889999999999555443333
No 405
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.17 E-value=0.033 Score=55.85 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++.+.+.+..+.+. .+-++|+.|+||+|+|..+++..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999887655 58899999999999999888775
No 406
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.17 E-value=0.05 Score=54.10 Aligned_cols=63 Identities=25% Similarity=0.295 Sum_probs=47.5
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHH
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQE 148 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 148 (552)
.++|.++.+..+...+..+ +-+-+.|.+|+|||+||++++... . -..++|.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcC
Confidence 3789999888887777765 578899999999999999999876 2 3345566666666555443
No 407
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.17 E-value=0.1 Score=53.95 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC--HHHHHHHHHHHcCCC
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR--LENIQETIGEKIGLL 157 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~ 157 (552)
..|++++|+.|+||||++..++... ........+..+.... +. ..+-+...++.++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt-~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDS-YRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCc-cchhHHHHHHHHHHHhCCC
Confidence 4799999999999999999998765 2222222445555443 32 233345555665544
No 408
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.17 E-value=0.016 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 409
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.17 E-value=0.086 Score=44.12 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEEecc
Q 048813 405 PTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLDLS 463 (552)
Q Consensus 405 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~ 463 (552)
..+.+++.+.+..+ +..++...|..++.|+.+.+.. .+..++ ..+..+.+|+.+.+.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 34444444444332 3344444444444444444433 333322 223334444444443
No 410
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.16 E-value=0.25 Score=49.22 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=47.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
+.++|.++|+.|+||||-...++.++ .....=..+..|+...-- ...+-++.-++-++.+-. ...+.++....+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 36899999999999995444444444 112333456666655432 344455566666666543 23334444433332
Q ss_pred HhccceEEEEEccc
Q 048813 176 ILKEQKFVLLLDDL 189 (552)
Q Consensus 176 ~l~~k~~LlVlDdv 189 (552)
+++.. ++.+|-+
T Consensus 279 -l~~~d-~ILVDTa 290 (407)
T COG1419 279 -LRDCD-VILVDTA 290 (407)
T ss_pred -hhcCC-EEEEeCC
Confidence 34443 4444544
No 411
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.14 E-value=0.066 Score=54.46 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=55.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-----ccccHH--
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-----KNRRIE-- 167 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~~~-- 167 (552)
..-..++|.|..|+|||||.+.+++.. .-+.++++-+++.. ...++.+..+..-++..... +.....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 345689999999999999999998875 22567777777654 34455544333222211100 011111
Q ss_pred ---HHHHHHHHHh--ccceEEEEEcccccc
Q 048813 168 ---QKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 168 ---~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.....+-+++ +++++|+++||+-..
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1112234444 578999999998654
No 412
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.11 Score=55.36 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=60.2
Q ss_pred ccchHHHHHHHHHHhcc---------C---CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHH
Q 048813 79 VIGLQSQLEQVWRCLVE---------E---PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENI 146 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~---------~---~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 146 (552)
+=|.++.+.+|.+-+.- . +.+=|-++|++|.|||-+|++|+... ..-|++|-.+ ++
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP----EL 741 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP----EL 741 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----HH
Confidence 66889999998876642 1 23458889999999999999999875 1233444432 22
Q ss_pred HHHHHHHcCCCCcccccccHHHHHHHHHHHhccceEEEEEcccccc
Q 048813 147 QETIGEKIGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 147 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
+..-. ..+++...+...+.-..+.|.|.+|.+++.
T Consensus 742 LNMYV-----------GqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 742 LNMYV-----------GQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHh-----------cchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22211 223444455555566778999999998654
No 413
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.12 E-value=0.02 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|.|+|+.|+||||+|+.+++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999998875
No 414
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.024 Score=61.27 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=36.8
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++||++++.++++.|....-.--.++|-+|+|||++|.-++.+.
T Consensus 172 vIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI 215 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI 215 (786)
T ss_pred CcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH
Confidence 77999999999999986443444678999999999998888775
No 415
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.11 E-value=0.11 Score=53.07 Aligned_cols=94 Identities=19% Similarity=0.336 Sum_probs=57.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-----cccccH----
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDT-----WKNRRI---- 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~---- 166 (552)
.-.-++|.|.+|+|||||+..+..... ..+=..++++-+++.. ...++.+.+...=.+.... .+....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999887651 1223477777787654 4566777765432221100 011111
Q ss_pred -HHHHHHHHHHh---ccceEEEEEcccccc
Q 048813 167 -EQKALDIFRIL---KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 -~~~~~~l~~~l---~~k~~LlVlDdv~~~ 192 (552)
......+.+++ +++++|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 11223455665 357999999998654
No 416
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.11 E-value=0.048 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 417
>PRK13946 shikimate kinase; Provisional
Probab=95.10 E-value=0.019 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.++|++|+||||+|+.+++..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999875
No 418
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.036 Score=48.17 Aligned_cols=30 Identities=23% Similarity=0.514 Sum_probs=25.6
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 93 LVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 93 L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+......+|-+.|.+|.||||+|.+++...
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 334556799999999999999999999887
No 419
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.07 E-value=0.13 Score=49.05 Aligned_cols=61 Identities=28% Similarity=0.365 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCC-------CeEEEEEECCc-cCHHHHHHHHHHHcCCCCcc
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNF-------NYVIWVVVSKD-LRLENIQETIGEKIGLLNDT 160 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f-------~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~ 160 (552)
++.|+|.||+|||||+-..+=.....++-| ..+++|++... .++-+=++.+..+++++..+
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPad 159 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPAD 159 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHh
Confidence 556679999999999866543332223333 25677766543 23444566778888876544
No 420
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.07 E-value=0.096 Score=46.73 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.-.+++|+|..|+|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999998764
No 421
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.05 E-value=0.036 Score=48.17 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 85 QLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 85 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+++|.+.+.. +++.++|..|+|||||...+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35556666543 799999999999999999998764
No 422
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.03 E-value=0.1 Score=53.36 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc-----ccccH----
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW-----KNRRI---- 166 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~---- 166 (552)
..-..++|.|..|+|||||++.++... . .-..+++..-.+.....++.+.+...-++..... +....
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 345689999999999999999998764 1 1124444333344455666666654422211100 00011
Q ss_pred -HHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 167 -EQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 -~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
......+-+++ +++.+|+++||+-..
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11122344444 478999999998554
No 423
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.03 E-value=0.12 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~ 120 (552)
.-.+++|+|..|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 446999999999999999999864
No 424
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.02 E-value=0.024 Score=48.37 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 80 IGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 80 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
||....++++.+.+.. ....-|.|+|..|+||+++|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4777777777777653 444678999999999999999998875
No 425
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.01 E-value=0.036 Score=57.43 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+..+.. ..+.++|..|+||||+|+.+++..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4588999999999999987765 467889999999999999998875
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.99 E-value=0.022 Score=45.68 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHIN 119 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~ 119 (552)
.-..++|.|.+|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999975
No 427
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.98 E-value=0.023 Score=51.17 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999997764
No 428
>PRK04182 cytidylate kinase; Provisional
Probab=94.97 E-value=0.021 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|.|.|+.|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998875
No 429
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.95 E-value=0.1 Score=51.75 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=36.2
Q ss_pred ccc-hHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIG-LQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vG-r~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++| -+..++.+.+.+..+++. ..-++|+.|+||||+|+.+++..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 567 777888888888776654 56899999999999999987765
No 430
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.94 E-value=0.065 Score=50.17 Aligned_cols=66 Identities=29% Similarity=0.352 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhc----ccCCCCeEEEEEECCccCHHHHHHHHHH
Q 048813 85 QLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLE----STTNFNYVIWVVVSKDLRLENIQETIGE 152 (552)
Q Consensus 85 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 152 (552)
..+.+...+.... +..|+|++|.||||++..+...... ....-...+-++......+..+...+.+
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3444544444332 7899999999999776665554300 1133344444555554445555555544
No 431
>PRK13768 GTPase; Provisional
Probab=94.93 E-value=0.036 Score=52.70 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++.|.|.||+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999998887766
No 432
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.93 E-value=0.047 Score=49.35 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=33.3
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..+..+.-..... .-+.++|.+|+|||++|+.+..-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence 45889999888887666543 588999999999999999986543
No 433
>PLN02200 adenylate kinase family protein
Probab=94.93 E-value=0.025 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.|.|++|+||||+|+.++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999998765
No 434
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.93 E-value=0.043 Score=53.63 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHhcc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|+|.++.++++++.+.. ..-+|+.++|+.|.||||||+.+-+-.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999998853 356899999999999999999987765
No 435
>PLN02924 thymidylate kinase
Probab=94.93 E-value=0.13 Score=47.68 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|+|-|..|+||||+|+.+++..
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 436
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.91 E-value=0.2 Score=44.87 Aligned_cols=91 Identities=24% Similarity=0.321 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEE---ECCccCHHHHH------HHHHHHcCCCCc---ccccc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVV---VSKDLRLENIQ------ETIGEKIGLLND---TWKNR 164 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~------~~i~~~l~~~~~---~~~~~ 164 (552)
+-.+++|.|..|.|||||++.++... ....+.+++. +.. .+..... -++++.+++... .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 44699999999999999999998865 2334444442 221 1221211 124555554321 01111
Q ss_pred c-HHHHHHHHHHHhccceEEEEEcccccc
Q 048813 165 R-IEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 165 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
+ -+...-.+.+.+-..+-++++|+.-..
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 2 223334456667777789999987543
No 437
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.90 E-value=0.025 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~ 120 (552)
..+|||+|+.|+||||+|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998855
No 438
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.90 E-value=0.037 Score=56.36 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=35.9
Q ss_pred CcccchHHHHHHHHHHhcc-------C---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-------E---------PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++||.+..++.+...+.. . ....+.++|++|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999988655421 0 12568999999999999999998765
No 439
>PRK06761 hypothetical protein; Provisional
Probab=94.89 E-value=0.048 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|.|.|++|+||||+|+.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999886
No 440
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.88 E-value=0.064 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|+|.|..|+||||+|+.+++..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 441
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.21 Score=54.36 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC--HHHHHHHHHHHcCCC
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR--LENIQETIGEKIGLL 157 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~ 157 (552)
..+|+++|+.|+||||.+..++... ........+..+.... +. ..+-++...+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvp 244 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTDS-FRIGALEQLRIYGRILGVP 244 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCC
Confidence 4699999999999999998888765 2122223455555432 22 334455555555543
No 442
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=94.82 E-value=0.045 Score=51.14 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE 144 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 144 (552)
+.|+|+|-|||||||.|..+.... ......++-|-++...|-.
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaal---a~~G~kVl~iGCDPK~DST 43 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAAL---AEMGKKVLQIGCDPKADST 43 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH---HHTT--EEEEEESSSSTSS
T ss_pred CeEEEEcCCCcccChhhhHHHHHH---HhccceeeEecccCCCccc
Confidence 468999999999999999887766 3444678888888766543
No 443
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.80 E-value=0.025 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|..|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999998764
No 444
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.079 Score=56.03 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=55.0
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE 144 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 144 (552)
.+.|.+...+.+.+...- ...+.+-++|++|.|||.||+++++.. ...|-.+ ...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v-----~~~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISV-----KGS---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEe-----eCH----
Confidence 356777777777665421 245578999999999999999999964 3334322 111
Q ss_pred HHHHHHHHHcCCCCcccccccHHHHHHHHHHHhccceEEEEEcccccc
Q 048813 145 NIQETIGEKIGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 145 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
.+..+ +-...............+...+.|.+|+++..
T Consensus 311 ----~l~sk-------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 311 ----ELLSK-------WVGESEKNIRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred ----HHhcc-------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhh
Confidence 11110 01112222333344445678899999999554
No 445
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=94.77 E-value=0.15 Score=43.29 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++.|.|.+|.||||+++++.+..
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l 36 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEEL 36 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHh
Confidence 489999999999999999998876
No 446
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.77 E-value=0.081 Score=50.23 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=52.0
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHhhhhcccCCCCeE-EEEEECCcc-CHHHHHHHHHHHcCCCCcc-----cccccHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLL-THINNKFLESTTNFNYV-IWVVVSKDL-RLENIQETIGEKIGLLNDT-----WKNRRIEQ 168 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~~~ 168 (552)
.-.-++|.|..|+|||+|| ..+.+.. +-+.+ +++-+++.. ...++.+.+...=.+.... .+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3457899999999999996 5565542 23444 666677654 4566666666432211100 01111111
Q ss_pred -----HHHHHHHHh--ccceEEEEEcccccc
Q 048813 169 -----KALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 169 -----~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
....+.+++ +++.+|+++||+...
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 112233333 578999999998544
No 447
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.76 E-value=0.037 Score=49.84 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVV 136 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~ 136 (552)
.-.|++|+|++|+|||||.+.+..-. ..=.+.+|+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEEC
Confidence 44699999999999999999986543 2234677764
No 448
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.76 E-value=0.026 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+++|+|..|+||||+++.++...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999875
No 449
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.029 Score=48.16 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
..++.|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 478999999999999999877554
No 450
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.74 E-value=0.023 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~ 121 (552)
|+|.|..|+|||||++++...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999764
No 451
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.73 E-value=0.03 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
..++|.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999998754
No 452
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.72 E-value=0.14 Score=52.27 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=50.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC-ccCHHHHHHHHHHHcCCCC-------cc---cccc
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK-DLRLENIQETIGEKIGLLN-------DT---WKNR 164 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~---~~~~ 164 (552)
..-..++|.|..|+|||||++.+.... ..+..+...+.. .....++....+..-+... .+ ....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 355789999999999999999987754 123332333332 2233444434333322211 00 0111
Q ss_pred cHHHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 165 RIEQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 165 ~~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
...+....+.++. +++++|+++||+-..
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 1222222333333 578999999998654
No 453
>PTZ00494 tuzin-like protein; Provisional
Probab=94.71 E-value=0.45 Score=47.89 Aligned_cols=76 Identities=18% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCcccchHHHHHHHHHHhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGE 152 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 152 (552)
...+|.|+.+-..+.+.|.. .+.+++.+.|.-|.||++|.+...... --..++|++... ++-++.+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE------~~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE------GVALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc------CCCeEEEEecCC---cchHHHHHH
Confidence 45588999888888777764 478999999999999999998876654 134577877754 456778888
Q ss_pred HcCCCCcc
Q 048813 153 KIGLLNDT 160 (552)
Q Consensus 153 ~l~~~~~~ 160 (552)
.++.+.-+
T Consensus 441 ALgV~nve 448 (664)
T PTZ00494 441 ALGVSNVE 448 (664)
T ss_pred HhCCCChh
Confidence 88876543
No 454
>PHA02244 ATPase-like protein
Probab=94.70 E-value=0.063 Score=53.10 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=29.6
Q ss_pred cccchHHHHHHHH----HHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVW----RCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~----~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|......... .++..+ .-|.|+|.+|+|||+||++++...
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh
Confidence 3567555554433 333333 357789999999999999998875
No 455
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.03 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
..++.|.|++|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999876
No 456
>PLN02348 phosphoribulokinase
Probab=94.67 E-value=0.18 Score=50.40 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+...+|+|.|.+|+||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 457
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.67 E-value=0.097 Score=50.08 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 95 EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 95 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+...-++|+|..|+|||||.+.++...
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 3445789999999999999999998875
No 458
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.031 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+-|.++||.|+||||+.+++++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 458899999999999999999876
No 459
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.65 E-value=0.1 Score=53.23 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=52.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-----ccccH---
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-----KNRRI--- 166 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~~--- 166 (552)
..-..++|+|..|+|||||++.+.+.. ..+.++...++... ...++...+...-++..... +....
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 344689999999999999999987653 22344444454433 45555555554433221100 01111
Q ss_pred --HHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 167 --EQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 --~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
......+-+++ +++++|+++||+-..
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 11122344444 578999999998654
No 460
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.64 E-value=0.16 Score=52.02 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=49.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCC------ccccc----cc
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLN------DTWKN----RR 165 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------~~~~~----~~ 165 (552)
..-..++|+|..|+|||||++.+.+.. ..-..++++.--+.....++....+..-+... ..... ..
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 455799999999999999999988764 11224444332233334444333221111100 00000 01
Q ss_pred HHHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 166 IEQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 166 ~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.......+.+++ +++++|+++||+-..
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHHH
Confidence 111222344444 578999999998554
No 461
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.63 E-value=0.16 Score=44.80 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|.|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999998875
No 462
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.63 E-value=0.028 Score=50.02 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|.|+|+.|+||||+|+.+++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358889999999999999999875
No 463
>PLN02796 D-glycerate 3-kinase
Probab=94.62 E-value=0.093 Score=51.53 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..-+|+|.|..|+||||||+.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999998876
No 464
>PRK14532 adenylate kinase; Provisional
Probab=94.61 E-value=0.027 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|.|++|+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998765
No 465
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.16 Score=55.85 Aligned_cols=101 Identities=20% Similarity=0.323 Sum_probs=65.2
Q ss_pred cccchHHHHHHHHHHhcc------C--CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHH
Q 048813 78 TVIGLQSQLEQVWRCLVE------E--PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQET 149 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 149 (552)
.++|.++.+..|.+.+.. + +.....+.|+.|+|||-||++++... .+..+..+-++.|. .++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh-
Confidence 377888888888887753 2 35577889999999999999998876 55556555554443 333
Q ss_pred HHHHcCCCCcccccccHHHHHHHHHHHhccceE-EEEEcccccc
Q 048813 150 IGEKIGLLNDTWKNRRIEQKALDIFRILKEQKF-VLLLDDLWQR 192 (552)
Q Consensus 150 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~ 192 (552)
+.+-++.+ +.+...+ ....+-+.++.+.| .+.||||...
T Consensus 633 vskligsp-~gyvG~e---~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSP-PGYVGKE---EGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCC-cccccch---hHHHHHHHHhcCCceEEEEechhhc
Confidence 33333432 2222222 22355667777776 5556999764
No 466
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.60 E-value=0.027 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 467
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.59 E-value=0.18 Score=48.60 Aligned_cols=110 Identities=18% Similarity=0.252 Sum_probs=65.7
Q ss_pred cccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH-HHHHHHHH
Q 048813 78 TVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE-NIQETIGE 152 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~ 152 (552)
.++|-.++-.++..++.. ++..-+.|+|+.|.|||+|...+..+. +..-+..+-|........+ -.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 377999998888888763 456788899999999999988777664 3333445556655444332 23444544
Q ss_pred HcCCCCc--ccccccHHHHHHHHHHHhcc------ceEEEEEcccc
Q 048813 153 KIGLLND--TWKNRRIEQKALDIFRILKE------QKFVLLLDDLW 190 (552)
Q Consensus 153 ~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~ 190 (552)
++...-. .....+..+....+...|+. -++..|+|..+
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfD 147 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFD 147 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhh
Confidence 4422111 11222333444444454532 35788888764
No 468
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.58 E-value=0.046 Score=52.88 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR 142 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~ 142 (552)
+.|+|+|-||+||||+|..++.... +.. ..++-|+.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La--~~G-~~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA--EMG-KKVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH--HCC-CeEEEEeCCCCCC
Confidence 4789999999999999988887762 222 3455555554433
No 469
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.17 Score=47.84 Aligned_cols=89 Identities=20% Similarity=0.347 Sum_probs=56.8
Q ss_pred ccchHHHHHHHHHHhc---------c---CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHH
Q 048813 79 VIGLQSQLEQVWRCLV---------E---EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENI 146 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~---------~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 146 (552)
+-|.|...+.|.+... . ...+-|.++|++|.||+-||++|+... . .-|++||...-+.
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n-----STFFSvSSSDLvS-- 204 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N-----STFFSVSSSDLVS-- 204 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---C-----CceEEeehHHHHH--
Confidence 6799999999887642 1 246778999999999999999999876 1 2334444321111
Q ss_pred HHHHHHHcCCCCcccccccHHHHHHHHHHH-hccceEEEEEccccc
Q 048813 147 QETIGEKIGLLNDTWKNRRIEQKALDIFRI-LKEQKFVLLLDDLWQ 191 (552)
Q Consensus 147 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~ 191 (552)
.-+| .-+.+...+.+. -.+|.-.|.+|.++.
T Consensus 205 -----KWmG---------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 205 -----KWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred -----HHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1122 112333344433 256888999999853
No 470
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.57 E-value=0.03 Score=49.49 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|.|.+|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 471
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.55 E-value=0.16 Score=52.24 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=56.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCC--CeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-----ccccH--
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNF--NYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-----KNRRI-- 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f--~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~~-- 166 (552)
.-.-++|.|-.|+|||||+..+.+.. ...+.+ -.++++-+++.. ...++.+.+...=.+..... +....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34578999999999999999998875 221112 156777777654 45566666654322211100 01111
Q ss_pred ---HHHHHHHHHHhc---cceEEEEEcccccc
Q 048813 167 ---EQKALDIFRILK---EQKFVLLLDDLWQR 192 (552)
Q Consensus 167 ---~~~~~~l~~~l~---~k~~LlVlDdv~~~ 192 (552)
......+.++++ ++++|+++||+-..
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 111223555554 68899999998654
No 472
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.55 E-value=0.15 Score=51.83 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-----cccccH----
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDT-----WKNRRI---- 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~---- 166 (552)
....++|+|..|+|||||++.+.+.. ..+..+...++... ...++.+.+...=.+.... .+....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 44689999999999999999888754 12344455565543 3555555554432211110 001111
Q ss_pred -HHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 167 -EQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 -~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
......+.+++ +++++|+++||+-..
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 11122234444 578999999998553
No 473
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.54 E-value=0.066 Score=54.33 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=36.5
Q ss_pred CCcccchHHHHHHHHHHhc-------c---C--------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLV-------E---E--------PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+||.++.++.+...+. . . ....|.++|++|+|||++|+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4558999999999866551 1 1 12478999999999999999998765
No 474
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.54 E-value=0.18 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998876
No 475
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.53 E-value=0.029 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|++|+|+.|+|||||+.++....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 476
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.53 E-value=0.2 Score=50.36 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..-+|||.|..|+|||||++.+..-.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999996654
No 477
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.53 E-value=0.24 Score=52.58 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=53.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc-------------ccc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT-------------WKN 163 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------------~~~ 163 (552)
.-.++.|.|.+|+|||++|..+.... ...-..++|++.... ...+.+.+ .+++.+-.. ...
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 34688999999999999999987765 345578899987764 44444433 344432110 011
Q ss_pred ccHHHHHHHHHHHhcc-ceEEEEEccc
Q 048813 164 RRIEQKALDIFRILKE-QKFVLLLDDL 189 (552)
Q Consensus 164 ~~~~~~~~~l~~~l~~-k~~LlVlDdv 189 (552)
...++....+.+.+.. +.-++|+|.+
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 2234445555555543 4447888886
No 478
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.52 E-value=0.059 Score=51.96 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE 144 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 144 (552)
++|+|.|-||+||||+|..++... ...-..++-|+.....+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L---a~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL---AEMGKKVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH---HhCCCeEEEEEcCCCCCch
Confidence 578888999999999999988876 2233466777766554443
No 479
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.52 E-value=0.033 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 048813 101 VGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998775
No 480
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.52 E-value=0.045 Score=51.45 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=22.1
Q ss_pred EEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEE
Q 048813 103 LYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVV 137 (552)
Q Consensus 103 I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~ 137 (552)
|+|++|+||||+++.+.+.. ......++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~---~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL---ESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH---TTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhccCCceEEEc
Confidence 68999999999999999887 333344455553
No 481
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.51 E-value=0.055 Score=51.89 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
++|+|+|.+|+|||||+..+.... .... .+.-|...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L---~~~G-~V~~IKhd 37 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL---SGRG-RVGTVKHM 37 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH---HhCC-CEEEEEEc
Confidence 589999999999999999999887 2333 35555543
No 482
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.50 E-value=0.17 Score=51.47 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc----cccc------
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW----KNRR------ 165 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----~~~~------ 165 (552)
.....++|+|..|+|||||++.++... .....++.+.-.+.....++.+..+..-++..... ...+
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~----~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA----KADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----CCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 345688999999999999999998765 11223333222233556666665554433221100 0111
Q ss_pred HHHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 166 IEQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 166 ~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.......+.+++ +++.+|+++||+-..
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 111122233333 478999999998654
No 483
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.48 E-value=0.1 Score=56.80 Aligned_cols=44 Identities=30% Similarity=0.254 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV---E---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.|.+...+++.+.+. + .-.+-|.++|++|+|||++|+.+++..
T Consensus 154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 6687777766655442 1 112348999999999999999998875
No 484
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.48 E-value=0.053 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998775
No 485
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.47 E-value=0.032 Score=51.53 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-..|+|+|++|+|||||.+.++.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 486
>PRK13695 putative NTPase; Provisional
Probab=94.47 E-value=0.049 Score=48.58 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|+|.|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 487
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.46 E-value=0.045 Score=59.11 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhccCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAG-IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|.+.+..+++. .+-++|+.|+||||+|+.++...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 44889999999999999876544 56789999999999999998765
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.45 E-value=0.14 Score=52.09 Aligned_cols=92 Identities=22% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCCCCc-----ccccccHH--
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGLLND-----TWKNRRIE-- 167 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-- 167 (552)
..-..++|+|..|+|||||++.+.+.. +.+..+++.+++. ....++..+....=..... ..+....+
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 345689999999999999999988754 3344566666553 3444555554321111000 00011111
Q ss_pred ---HHHHHHHHHh--ccceEEEEEcccccc
Q 048813 168 ---QKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 168 ---~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.....+-+++ +++++|+++||+-..
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 1122244444 578999999998654
No 489
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.44 E-value=0.029 Score=50.33 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 048813 100 IVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~ 120 (552)
+|+|+|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 490
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.42 E-value=0.19 Score=48.81 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCcccchHHHHHH---HHHHhccC--CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC-----HH
Q 048813 75 TEPTVIGLQSQLEQ---VWRCLVEE--PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR-----LE 144 (552)
Q Consensus 75 ~~~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~-----~~ 144 (552)
...-+||..+..+. ++++..++ .-+.|-|+|++|.|||+||-.+++.. ...-.|.. +..|.-++ .+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~---isgsEiYS~E~kKTE 112 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFVA---ISGSEIYSLEVKKTE 112 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCcee---eccceeeeecccHHH
Confidence 34558898776654 35555554 35789999999999999999999987 33344532 22333222 33
Q ss_pred HHHHHHHHHcCC
Q 048813 145 NIQETIGEKIGL 156 (552)
Q Consensus 145 ~~~~~i~~~l~~ 156 (552)
.+.+.+-+.+|.
T Consensus 113 ~L~qa~RraIGv 124 (450)
T COG1224 113 ALTQALRRAIGV 124 (450)
T ss_pred HHHHHHHHhhce
Confidence 445555555553
No 491
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.41 E-value=0.14 Score=42.87 Aligned_cols=103 Identities=20% Similarity=0.325 Sum_probs=63.8
Q ss_pred CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEEeccCCCCcccchh-hhcCCCCC
Q 048813 404 IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLDLSESDIEELPGE-LKALVNLK 481 (552)
Q Consensus 404 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~ 481 (552)
+..+.+|+.+.+.. .+..++...|..+..|+.+.+.++ +..++ ..+..+..|+.+.+.. .+..++.. +..+.+|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 56677888888764 567788878888889999999885 77765 3567777899999976 66666654 55689999
Q ss_pred EEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 482 CLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 482 ~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 9999754 677887767776 888888753
No 492
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.39 E-value=0.06 Score=52.92 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....|+++|+.|+||||+|+.++...
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 493
>PRK01184 hypothetical protein; Provisional
Probab=94.39 E-value=0.035 Score=50.03 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
.+|+|+|++|+||||+|+ ++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 489999999999999987 4443
No 494
>PRK12338 hypothetical protein; Provisional
Probab=94.38 E-value=0.038 Score=53.67 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|.+|+||||+|++++.+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998875
No 495
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.37 E-value=0.056 Score=46.98 Aligned_cols=36 Identities=31% Similarity=0.359 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEE
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVV 136 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~ 136 (552)
.+|++|+|+.|+|||||...+.... +.+.-.+.-|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L---~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL---KARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH---HhCCcEEEEEE
Confidence 4799999999999999999998876 33333444443
No 496
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.35 E-value=0.072 Score=55.85 Aligned_cols=53 Identities=28% Similarity=0.450 Sum_probs=40.3
Q ss_pred ccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEE
Q 048813 79 VIGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVV 136 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~ 136 (552)
++--.+.++++..||.+ ...+++.+.|++|+||||.++.+++.. .|+.+=|.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 44456778888888864 235789999999999999999998875 355566653
No 497
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.35 E-value=0.07 Score=56.82 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=35.3
Q ss_pred CcccchHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|..+.|.+..+.|.+.... ....+|.|+|++|+||||+|+.++...
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 3455777777766665543 344589999999999999999999876
No 498
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.35 E-value=0.25 Score=50.37 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL 141 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~ 141 (552)
..-..++|.|..|+|||||++.+.... .-+..+..-+++..
T Consensus 155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~-----~~~v~vi~~iGerg 195 (434)
T PRK08472 155 GKGQKLGIFAGSGVGKSTLMGMIVKGC-----LAPIKVVALIGERG 195 (434)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc-----CCCEEEEEeeCccc
Confidence 455789999999999999999998654 12344445455443
No 499
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.32 E-value=0.05 Score=42.76 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++.+.|.+|+||||+|..++...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998886
No 500
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.29 E-value=0.07 Score=48.80 Aligned_cols=92 Identities=11% Similarity=0.138 Sum_probs=43.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
+...++.+.|.+|+||||++..+.... . ....+.|+...-.....-...+...-..................+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~---~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF---G--GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc---c--CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999987764 1 44555565332211111122222221111111111222334455556
Q ss_pred HhccceEEEEEcccccc
Q 048813 176 ILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 176 ~l~~k~~LlVlDdv~~~ 192 (552)
....+++=+|+|..-..
T Consensus 88 ~a~~~~~nii~E~tl~~ 104 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLSN 104 (199)
T ss_dssp HHHHCT--EEEE--TTS
T ss_pred HHHHcCCCEEEecCCCC
Confidence 66677778888886543
Done!