Query 048813
Match_columns 552
No_of_seqs 362 out of 3124
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 23:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.6E-41 8.9E-46 358.2 16.1 265 76-360 127-470 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1E-33 3.5E-38 330.4 22.0 265 75-360 122-451 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.1E-34 7.3E-39 309.6 14.4 246 77-354 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.3E-31 1.8E-35 283.2 20.7 261 75-358 122-449 (591)
5 3rfs_A Internalin B, repeat mo 99.6 2.8E-15 9.6E-20 144.1 15.0 166 369-550 46-213 (272)
6 4fcg_A Uncharacterized protein 99.6 5.3E-15 1.8E-19 146.1 12.8 131 382-513 123-263 (328)
7 3m19_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 134.8 16.1 165 369-550 19-187 (251)
8 2o6q_A Variable lymphocyte rec 99.6 3.4E-14 1.1E-18 136.4 16.2 153 382-550 57-213 (270)
9 4ezg_A Putative uncharacterize 99.6 2.6E-14 9E-19 130.2 13.9 147 383-550 41-189 (197)
10 1h6u_A Internalin H; cell adhe 99.6 9.4E-14 3.2E-18 135.9 18.3 166 375-550 52-225 (308)
11 2o6q_A Variable lymphocyte rec 99.6 7E-14 2.4E-18 134.2 16.2 165 369-550 21-189 (270)
12 3e6j_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 131.2 14.9 140 372-513 27-169 (229)
13 1h6t_A Internalin B; cell adhe 99.5 1.1E-13 3.8E-18 134.1 16.9 158 369-550 51-208 (291)
14 4fcg_A Uncharacterized protein 99.5 5.9E-14 2E-18 138.6 14.8 152 381-549 145-308 (328)
15 3m19_A Variable lymphocyte rec 99.5 1.6E-13 5.6E-18 130.0 15.0 132 381-513 54-189 (251)
16 1ozn_A Reticulon 4 receptor; N 99.5 1.4E-13 4.9E-18 133.1 14.9 128 382-510 52-184 (285)
17 1p9a_G Platelet glycoprotein I 99.5 1.1E-13 3.7E-18 134.2 13.8 128 382-511 51-180 (290)
18 1xeu_A Internalin C; cellular 99.5 9E-14 3.1E-18 132.7 13.0 123 382-512 37-159 (263)
19 2z80_A TOLL-like receptor 2, v 99.5 6E-14 2.1E-18 140.2 11.9 140 373-513 40-184 (353)
20 1p9a_G Platelet glycoprotein I 99.5 1.3E-13 4.3E-18 133.7 13.6 132 386-523 31-165 (290)
21 2v9t_B SLIT homolog 2 protein 99.5 2E-13 6.9E-18 126.5 14.3 143 369-513 16-162 (220)
22 2o6s_A Variable lymphocyte rec 99.5 2.7E-13 9.3E-18 124.6 14.5 128 385-513 27-158 (208)
23 2v9t_B SLIT homolog 2 protein 99.5 1.7E-13 5.9E-18 127.0 12.7 145 389-550 14-160 (220)
24 1ozn_A Reticulon 4 receptor; N 99.5 3.3E-13 1.1E-17 130.5 15.1 154 381-550 75-233 (285)
25 4ezg_A Putative uncharacterize 99.5 2.3E-13 8E-18 123.8 12.9 141 368-512 48-190 (197)
26 1h6u_A Internalin H; cell adhe 99.5 3.7E-13 1.3E-17 131.7 14.8 158 383-550 38-203 (308)
27 3rfs_A Internalin B, repeat mo 99.5 3.8E-13 1.3E-17 129.1 14.7 144 369-513 68-215 (272)
28 3zyi_A Leucine-rich repeat-con 99.5 5.2E-13 1.8E-17 138.1 16.6 128 386-513 75-206 (452)
29 2v70_A SLIT-2, SLIT homolog 2 99.5 4.6E-13 1.6E-17 124.1 14.4 143 369-513 16-163 (220)
30 1m9s_A Internalin B; cell inva 99.5 2.4E-13 8.2E-18 144.7 14.1 132 375-513 54-185 (605)
31 2v70_A SLIT-2, SLIT homolog 2 99.5 2.9E-13 1E-17 125.4 12.9 146 388-550 13-161 (220)
32 2ell_A Acidic leucine-rich nuc 99.5 1.8E-13 6.1E-18 121.2 10.9 130 386-518 24-162 (168)
33 2z62_A TOLL-like receptor 4, v 99.5 3.9E-13 1.3E-17 129.4 13.6 125 381-506 47-176 (276)
34 1h6t_A Internalin B; cell adhe 99.5 2.3E-13 7.8E-18 132.0 12.1 145 382-550 42-186 (291)
35 3zyj_A Leucine-rich repeat-con 99.5 7.5E-13 2.6E-17 136.4 16.4 128 386-513 64-195 (440)
36 2z62_A TOLL-like receptor 4, v 99.5 7.3E-13 2.5E-17 127.4 14.9 126 386-513 28-159 (276)
37 3e6j_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 123.7 13.9 145 387-549 20-166 (229)
38 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 4.8E-18 122.9 8.6 131 381-514 14-151 (176)
39 2je0_A Acidic leucine-rich nuc 99.4 2.5E-13 8.7E-18 117.6 9.5 123 386-511 17-148 (149)
40 3zyi_A Leucine-rich repeat-con 99.4 8E-13 2.7E-17 136.7 14.5 127 383-511 120-250 (452)
41 2z66_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 130.6 12.0 131 382-513 97-233 (306)
42 3vq2_A TLR4, TOLL-like recepto 99.4 1.1E-12 3.7E-17 141.1 15.3 148 369-522 16-169 (606)
43 2z81_A CD282 antigen, TOLL-lik 99.4 4.8E-13 1.6E-17 142.0 12.2 139 375-514 16-159 (549)
44 2xwt_C Thyrotropin receptor; s 99.4 5.3E-13 1.8E-17 125.5 11.1 127 382-511 51-187 (239)
45 4fmz_A Internalin; leucine ric 99.4 1.2E-12 4E-17 130.5 14.1 177 368-550 48-229 (347)
46 3zyj_A Leucine-rich repeat-con 99.4 1.2E-12 4E-17 134.9 14.4 151 383-550 133-287 (440)
47 2o6s_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 119.3 13.9 145 389-550 10-156 (208)
48 4fmz_A Internalin; leucine ric 99.4 3.1E-12 1.1E-16 127.4 16.8 177 368-550 70-251 (347)
49 3o6n_A APL1; leucine-rich repe 99.4 9.3E-13 3.2E-17 133.5 12.9 129 384-513 43-175 (390)
50 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.8E-17 131.4 12.9 149 369-522 23-179 (361)
51 2id5_A Lingo-1, leucine rich r 99.4 2.9E-12 9.8E-17 133.5 16.0 127 386-513 32-162 (477)
52 2z80_A TOLL-like receptor 2, v 99.4 1.1E-12 3.8E-17 131.0 11.7 144 370-514 58-209 (353)
53 1ogq_A PGIP-2, polygalacturona 99.4 6.6E-13 2.3E-17 130.2 9.3 126 383-510 73-204 (313)
54 2z66_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 127.9 10.8 139 372-513 15-160 (306)
55 2xot_A Amphoterin-induced prot 99.4 1.9E-12 6.6E-17 129.6 12.4 149 388-550 20-171 (361)
56 4g8a_A TOLL-like receptor 4; l 99.4 3.4E-12 1.1E-16 137.8 15.2 146 372-523 39-190 (635)
57 2xwt_C Thyrotropin receptor; s 99.4 1E-12 3.4E-17 123.6 9.5 169 376-550 23-213 (239)
58 2id5_A Lingo-1, leucine rich r 99.4 3.8E-12 1.3E-16 132.6 14.7 133 381-514 51-187 (477)
59 1m9s_A Internalin B; cell inva 99.4 2.1E-12 7E-17 137.5 12.9 140 368-514 69-208 (605)
60 1ogq_A PGIP-2, polygalacturona 99.4 1.1E-12 3.8E-17 128.6 9.9 161 386-550 50-229 (313)
61 2z63_A TOLL-like receptor 4, v 99.4 3.1E-12 1.1E-16 136.4 13.6 142 369-513 12-159 (570)
62 3oja_B Anopheles plasmodium-re 99.4 2.5E-12 8.5E-17 137.8 12.7 128 385-513 50-181 (597)
63 3o6n_A APL1; leucine-rich repe 99.4 6.6E-12 2.3E-16 127.1 15.0 125 382-510 65-193 (390)
64 2o6r_A Variable lymphocyte rec 99.4 6.1E-12 2.1E-16 112.3 12.9 123 388-512 9-133 (177)
65 3oja_B Anopheles plasmodium-re 99.4 5.3E-12 1.8E-16 135.2 14.7 124 383-510 72-199 (597)
66 2z63_A TOLL-like receptor 4, v 99.4 3.8E-12 1.3E-16 135.7 13.5 131 381-512 47-186 (570)
67 4eco_A Uncharacterized protein 99.3 7.4E-12 2.5E-16 135.0 15.7 125 387-513 403-546 (636)
68 1xeu_A Internalin C; cellular 99.3 5.9E-12 2E-16 120.0 13.2 139 368-514 45-183 (263)
69 2je0_A Acidic leucine-rich nuc 99.3 2.1E-12 7.1E-17 111.8 9.2 129 406-549 15-147 (149)
70 4g8a_A TOLL-like receptor 4; l 99.3 3.2E-12 1.1E-16 138.0 12.8 121 391-513 36-158 (635)
71 1ziw_A TOLL-like receptor 3; i 99.3 4.6E-12 1.6E-16 138.1 14.0 144 368-513 8-155 (680)
72 3j0a_A TOLL-like receptor 5; m 99.3 4.2E-12 1.4E-16 141.6 13.9 145 367-514 7-159 (844)
73 3vq2_A TLR4, TOLL-like recepto 99.3 4.9E-12 1.7E-16 136.0 13.5 167 381-551 51-238 (606)
74 1xku_A Decorin; proteoglycan, 99.3 8.2E-12 2.8E-16 123.4 14.0 125 386-513 52-181 (330)
75 4ecn_A Leucine-rich repeat pro 99.3 1.1E-11 3.6E-16 136.8 16.1 104 408-513 673-786 (876)
76 1o6v_A Internalin A; bacterial 99.3 1.4E-11 4.7E-16 128.0 16.0 129 379-514 214-342 (466)
77 1w8a_A SLIT protein; signaling 99.3 5.9E-12 2E-16 113.9 11.6 122 389-512 11-135 (192)
78 2wfh_A SLIT homolog 2 protein 99.3 9.7E-12 3.3E-16 112.5 13.1 121 389-512 13-135 (193)
79 2z7x_B TOLL-like receptor 1, v 99.3 8E-12 2.7E-16 131.6 14.2 117 390-511 4-123 (520)
80 1xku_A Decorin; proteoglycan, 99.3 1.4E-11 4.8E-16 121.7 15.0 128 381-512 95-225 (330)
81 1o6v_A Internalin A; bacterial 99.3 1.7E-11 5.6E-16 127.3 16.1 138 369-513 226-363 (466)
82 3bz5_A Internalin-J, INLJ; leu 99.3 1.4E-11 4.8E-16 127.2 15.4 133 370-513 48-180 (457)
83 1dce_A Protein (RAB geranylger 99.3 4E-12 1.4E-16 134.4 11.2 124 409-549 442-567 (567)
84 1dce_A Protein (RAB geranylger 99.3 4.9E-12 1.7E-16 133.8 11.8 121 387-510 442-567 (567)
85 2ell_A Acidic leucine-rich nuc 99.3 9.7E-12 3.3E-16 109.9 11.9 119 378-497 40-165 (168)
86 2qen_A Walker-type ATPase; unk 99.3 9.9E-12 3.4E-16 123.8 13.3 107 76-192 11-140 (350)
87 3v47_A TOLL-like receptor 5B a 99.3 8.6E-12 2.9E-16 129.0 12.8 144 368-514 14-165 (455)
88 3t6q_A CD180 antigen; protein- 99.3 1.5E-11 5E-16 132.2 15.0 143 369-513 17-163 (606)
89 4b8c_D Glucose-repressible alc 99.3 2.4E-12 8.1E-17 140.5 8.6 107 382-489 220-327 (727)
90 4ecn_A Leucine-rich repeat pro 99.3 3.1E-12 1.1E-16 141.1 9.6 130 381-514 443-606 (876)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.4E-11 4.7E-16 131.1 14.3 119 389-512 34-155 (562)
92 2ft3_A Biglycan; proteoglycan, 99.3 1.5E-11 5.1E-16 121.6 13.4 128 381-511 97-249 (332)
93 3rgz_A Protein brassinosteroid 99.3 8.8E-12 3E-16 137.6 12.8 83 385-467 465-550 (768)
94 3oja_A Leucine-rich immune mol 99.3 6.4E-12 2.2E-16 130.9 11.0 101 407-510 119-221 (487)
95 3bz5_A Internalin-J, INLJ; leu 99.3 1.1E-11 3.8E-16 127.9 12.5 121 382-513 38-158 (457)
96 1a9n_A U2A', U2A'; complex (nu 99.3 7E-12 2.4E-16 111.8 9.2 121 369-489 24-151 (176)
97 3o53_A Protein LRIM1, AGAP0063 99.3 4.4E-12 1.5E-16 124.6 8.3 126 385-513 119-247 (317)
98 2z7x_B TOLL-like receptor 1, v 99.3 1.9E-11 6.5E-16 128.8 13.6 139 369-514 5-149 (520)
99 2ft3_A Biglycan; proteoglycan, 99.3 1.2E-11 4.2E-16 122.2 11.5 122 386-511 54-180 (332)
100 4eco_A Uncharacterized protein 99.3 1.5E-11 5.1E-16 132.6 13.1 130 384-514 431-577 (636)
101 3o53_A Protein LRIM1, AGAP0063 99.3 9.1E-12 3.1E-16 122.3 10.4 144 386-549 99-244 (317)
102 2z81_A CD282 antigen, TOLL-lik 99.3 1.6E-11 5.3E-16 130.3 12.7 134 380-514 44-183 (549)
103 1wwl_A Monocyte differentiatio 99.3 9.9E-12 3.4E-16 121.8 10.1 129 383-512 118-262 (312)
104 1w5s_A Origin recognition comp 99.3 3.6E-11 1.2E-15 122.6 14.6 116 76-192 21-150 (412)
105 2wfh_A SLIT homolog 2 protein 99.3 2.4E-11 8E-16 110.0 11.5 121 411-550 13-134 (193)
106 4glp_A Monocyte differentiatio 99.3 1.1E-11 3.7E-16 121.4 9.5 163 383-550 114-302 (310)
107 4b8c_D Glucose-repressible alc 99.3 2.4E-12 8.2E-17 140.4 5.3 115 403-523 219-333 (727)
108 3rgz_A Protein brassinosteroid 99.2 1.9E-11 6.4E-16 134.9 12.0 150 385-550 393-546 (768)
109 1wwl_A Monocyte differentiatio 99.2 1.3E-11 4.6E-16 120.8 9.7 123 386-510 95-235 (312)
110 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 2.7E-11 9.4E-16 128.8 12.4 141 367-514 34-180 (562)
111 3cvr_A Invasion plasmid antige 99.2 5.4E-11 1.8E-15 125.3 14.1 12 538-549 226-237 (571)
112 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8.2E-16 109.9 9.8 122 410-550 10-134 (192)
113 2fna_A Conserved hypothetical 99.2 1E-10 3.5E-15 116.7 15.3 54 76-139 12-65 (357)
114 3oja_A Leucine-rich immune mol 99.2 1.2E-11 4.1E-16 128.9 8.7 127 384-513 118-247 (487)
115 1ziw_A TOLL-like receptor 3; i 99.2 3E-11 1E-15 131.7 11.7 124 389-514 7-132 (680)
116 3t6q_A CD180 antigen; protein- 99.2 7.5E-11 2.6E-15 126.6 14.3 132 382-514 274-411 (606)
117 3v47_A TOLL-like receptor 5B a 99.2 4.6E-11 1.6E-15 123.6 12.2 127 386-513 275-405 (455)
118 3j0a_A TOLL-like receptor 5; m 99.2 6.4E-11 2.2E-15 132.1 13.2 146 389-550 7-156 (844)
119 3cvr_A Invasion plasmid antige 99.2 1.1E-10 3.8E-15 122.8 13.6 117 387-520 121-244 (571)
120 2r9u_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 105.6 9.4 106 389-496 15-122 (174)
121 2o6r_A Variable lymphocyte rec 99.2 1.7E-10 5.9E-15 102.7 12.6 117 373-490 16-136 (177)
122 3g06_A SSPH2 (leucine-rich rep 99.2 2.8E-10 9.7E-15 121.2 15.5 77 386-471 61-137 (622)
123 4ay9_X Follicle-stimulating ho 99.2 9.5E-11 3.2E-15 116.7 11.0 176 371-549 37-253 (350)
124 4glp_A Monocyte differentiatio 99.2 8.6E-11 2.9E-15 114.9 10.2 122 384-510 167-301 (310)
125 3g06_A SSPH2 (leucine-rich rep 99.1 4.8E-10 1.6E-14 119.5 16.2 65 478-550 221-292 (622)
126 2ast_B S-phase kinase-associat 99.1 2.4E-11 8.4E-16 120.2 5.8 130 383-513 90-232 (336)
127 1jl5_A Outer protein YOPM; leu 99.1 3.5E-10 1.2E-14 116.6 14.4 113 386-511 91-203 (454)
128 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 5.9E-15 102.3 10.4 100 410-513 14-115 (174)
129 3g39_A Variable lymphocyte rec 99.1 1.8E-10 6.1E-15 101.9 10.3 101 388-489 11-113 (170)
130 1jl5_A Outer protein YOPM; leu 99.1 4.1E-10 1.4E-14 116.1 14.6 115 386-511 131-245 (454)
131 1ds9_A Outer arm dynein; leuci 99.1 1.2E-12 4.2E-17 119.1 -4.0 105 404-512 44-149 (198)
132 2ast_B S-phase kinase-associat 99.1 4.5E-11 1.6E-15 118.3 6.6 152 382-549 114-279 (336)
133 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 100.1 10.6 100 409-512 10-111 (170)
134 1ds9_A Outer arm dynein; leuci 99.0 5E-12 1.7E-16 115.1 -3.9 127 382-511 44-182 (198)
135 4ay9_X Follicle-stimulating ho 99.0 7.7E-10 2.6E-14 110.1 10.4 152 369-524 14-172 (350)
136 2ca6_A RAN GTPase-activating p 99.0 1E-10 3.4E-15 118.2 2.6 155 383-550 119-311 (386)
137 2ca6_A RAN GTPase-activating p 98.9 1.1E-09 3.6E-14 110.7 7.5 155 383-550 91-282 (386)
138 2ifg_A High affinity nerve gro 98.9 6E-09 2.1E-13 103.5 9.8 100 390-489 12-114 (347)
139 3goz_A Leucine-rich repeat-con 98.8 7.5E-09 2.5E-13 103.4 9.6 127 386-513 109-263 (362)
140 2qby_A CDC6 homolog 1, cell di 98.8 9.8E-09 3.4E-13 103.4 10.0 116 76-192 19-140 (386)
141 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.3E-13 101.1 10.2 99 411-513 11-113 (347)
142 2qby_B CDC6 homolog 3, cell di 98.8 9.7E-09 3.3E-13 103.5 9.4 116 77-192 20-145 (384)
143 1fnn_A CDC6P, cell division co 98.8 5.9E-08 2E-12 97.8 14.8 112 77-192 17-137 (389)
144 2v1u_A Cell division control p 98.8 2.6E-08 8.8E-13 100.4 11.9 115 77-192 19-142 (387)
145 3goz_A Leucine-rich repeat-con 98.8 7.8E-09 2.7E-13 103.3 7.7 152 387-550 52-233 (362)
146 1z7x_W Ribonuclease inhibitor; 98.6 9.7E-09 3.3E-13 106.1 3.3 129 384-514 225-381 (461)
147 2chg_A Replication factor C sm 98.6 9.5E-08 3.2E-12 88.0 9.0 46 77-122 17-62 (226)
148 1z7x_W Ribonuclease inhibitor; 98.6 1.6E-08 5.3E-13 104.6 2.6 154 385-550 169-349 (461)
149 1njg_A DNA polymerase III subu 98.6 1.9E-07 6.7E-12 87.1 9.8 46 77-122 23-69 (250)
150 3sb4_A Hypothetical leucine ri 98.5 3.2E-07 1.1E-11 90.2 10.9 56 454-511 225-282 (329)
151 3te6_A Regulatory protein SIR3 98.4 8.4E-07 2.9E-11 85.5 11.1 113 79-193 22-145 (318)
152 3ogk_B Coronatine-insensitive 98.4 1.2E-07 4.2E-12 101.1 5.4 129 384-514 162-304 (592)
153 3sb4_A Hypothetical leucine ri 98.4 7E-07 2.4E-11 87.8 10.3 79 431-512 225-306 (329)
154 3un9_A NLR family member X1; l 98.4 7.2E-08 2.5E-12 96.3 2.6 126 386-513 101-249 (372)
155 3ogk_B Coronatine-insensitive 98.4 1.4E-07 4.8E-12 100.7 4.6 126 384-511 190-326 (592)
156 1jbk_A CLPB protein; beta barr 98.4 1.4E-06 4.8E-11 77.9 10.0 46 77-122 22-67 (195)
157 3un9_A NLR family member X1; l 98.4 9.6E-08 3.3E-12 95.4 2.1 104 386-489 126-250 (372)
158 1sxj_B Activator 1 37 kDa subu 98.3 4.2E-07 1.4E-11 89.0 5.8 46 77-122 21-66 (323)
159 2p65_A Hypothetical protein PF 98.3 3.7E-06 1.3E-10 74.7 10.4 46 77-122 22-67 (187)
160 1hqc_A RUVB; extended AAA-ATPa 98.2 8.9E-06 3E-10 79.5 13.2 67 76-148 11-82 (324)
161 2p1m_B Transport inhibitor res 98.2 5.6E-07 1.9E-11 96.1 2.8 13 538-550 310-322 (594)
162 2p1m_B Transport inhibitor res 98.1 9.6E-07 3.3E-11 94.2 3.9 148 384-549 154-345 (594)
163 1iqp_A RFCS; clamp loader, ext 98.1 2E-06 6.9E-11 84.2 5.6 46 77-122 25-70 (327)
164 3rw6_A Nuclear RNA export fact 98.0 2E-06 6.7E-11 80.9 3.1 83 429-512 167-260 (267)
165 3h4m_A Proteasome-activating n 97.8 6.2E-05 2.1E-09 72.0 10.0 47 76-122 16-75 (285)
166 2ra8_A Uncharacterized protein 97.8 2.8E-05 9.6E-10 76.9 7.1 127 384-513 170-317 (362)
167 2chq_A Replication factor C sm 97.8 1.8E-05 6.2E-10 77.0 5.5 46 77-122 17-62 (319)
168 2qz4_A Paraplegin; AAA+, SPG7, 97.8 8.8E-05 3E-09 69.9 10.0 47 76-122 5-63 (262)
169 1jr3_A DNA polymerase III subu 97.8 5.7E-05 1.9E-09 75.3 8.8 46 77-122 16-62 (373)
170 2w58_A DNAI, primosome compone 97.7 8E-05 2.7E-09 67.2 8.1 51 84-137 36-90 (202)
171 3e4g_A ATP synthase subunit S, 97.7 3.6E-05 1.2E-09 67.0 5.2 83 433-515 62-151 (176)
172 3b9p_A CG5977-PA, isoform A; A 97.7 0.00014 4.6E-09 70.1 9.4 46 77-122 21-78 (297)
173 1io0_A Tropomodulin; LRR prote 97.6 4.9E-05 1.7E-09 67.6 5.4 107 405-513 33-161 (185)
174 3e4g_A ATP synthase subunit S, 97.6 9.1E-05 3.1E-09 64.5 6.6 82 455-550 61-147 (176)
175 3syl_A Protein CBBX; photosynt 97.6 5.1E-05 1.8E-09 73.5 5.6 44 79-122 33-91 (309)
176 3rw6_A Nuclear RNA export fact 97.6 7.4E-05 2.5E-09 70.1 6.4 77 408-485 170-258 (267)
177 1io0_A Tropomodulin; LRR prote 97.6 5.7E-05 1.9E-09 67.1 5.3 112 427-551 31-160 (185)
178 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00033 1.1E-08 68.1 11.1 46 77-122 12-69 (322)
179 3ec2_A DNA replication protein 97.6 9.3E-05 3.2E-09 65.4 6.5 41 82-122 19-62 (180)
180 1sxj_A Activator 1 95 kDa subu 97.6 0.00012 4.1E-09 76.3 8.3 46 77-122 39-101 (516)
181 1d2n_A N-ethylmaleimide-sensit 97.6 0.00037 1.3E-08 66.0 10.9 46 77-122 33-88 (272)
182 3cf0_A Transitional endoplasmi 97.5 0.00028 9.5E-09 68.0 9.7 46 77-122 15-73 (301)
183 4fdw_A Leucine rich hypothetic 97.5 0.00045 1.5E-08 69.4 11.5 127 381-510 175-330 (401)
184 3pvs_A Replication-associated 97.5 0.00043 1.5E-08 70.3 11.0 46 77-122 26-74 (447)
185 1lv7_A FTSH; alpha/beta domain 97.5 0.00028 9.4E-09 66.3 8.5 47 76-122 11-69 (257)
186 3d8b_A Fidgetin-like protein 1 97.5 0.00032 1.1E-08 69.4 9.2 46 77-122 84-141 (357)
187 3pfi_A Holliday junction ATP-d 97.4 0.0003 1E-08 69.0 8.5 46 77-122 29-79 (338)
188 3eie_A Vacuolar protein sortin 97.4 0.00035 1.2E-08 68.1 8.7 46 77-122 18-75 (322)
189 3vfd_A Spastin; ATPase, microt 97.4 0.00063 2.2E-08 68.1 10.7 46 77-122 115-172 (389)
190 3uk6_A RUVB-like 2; hexameric 97.4 0.00077 2.6E-08 66.9 11.0 47 76-122 43-94 (368)
191 1qvr_A CLPB protein; coiled co 97.4 0.00047 1.6E-08 76.4 9.9 45 78-122 171-215 (854)
192 2ra8_A Uncharacterized protein 97.3 0.00026 8.8E-09 70.0 6.8 153 384-550 137-315 (362)
193 4fdw_A Leucine rich hypothetic 97.3 0.00084 2.9E-08 67.4 10.5 126 381-513 221-355 (401)
194 3bos_A Putative DNA replicatio 97.3 0.00033 1.1E-08 64.7 6.8 61 76-139 27-90 (242)
195 3u61_B DNA polymerase accessor 97.3 0.00047 1.6E-08 67.2 8.0 47 76-122 25-72 (324)
196 2qp9_X Vacuolar protein sortin 97.3 0.00079 2.7E-08 66.4 9.4 46 77-122 51-108 (355)
197 2kjq_A DNAA-related protein; s 97.3 0.00029 9.9E-09 60.0 5.3 54 79-138 20-73 (149)
198 1l8q_A Chromosomal replication 97.2 0.0012 4E-08 64.3 10.2 47 76-122 10-61 (324)
199 4b4t_L 26S protease subunit RP 97.2 0.0011 3.9E-08 66.5 10.1 45 78-122 182-239 (437)
200 4b4t_J 26S protease regulatory 97.2 0.0012 4.1E-08 65.2 10.1 45 78-122 149-206 (405)
201 3n70_A Transport activator; si 97.2 0.0003 1E-08 59.6 5.1 45 78-122 2-48 (145)
202 4b4t_M 26S protease regulatory 97.2 0.0012 4.1E-08 66.2 10.0 45 78-122 182-239 (434)
203 2z4s_A Chromosomal replication 97.2 0.00029 1E-08 71.6 5.7 97 78-192 106-206 (440)
204 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0012 4.2E-08 72.2 10.8 46 77-122 186-231 (758)
205 2zan_A Vacuolar protein sortin 97.2 0.00093 3.2E-08 68.1 9.1 46 77-122 134-191 (444)
206 4b4t_H 26S protease regulatory 97.2 0.0014 4.7E-08 65.8 9.7 46 77-122 209-267 (467)
207 4b4t_K 26S protease regulatory 97.1 0.0013 4.4E-08 66.0 9.3 45 78-122 173-230 (428)
208 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.0003 1E-08 67.1 4.1 69 98-191 123-193 (331)
209 4fcw_A Chaperone protein CLPB; 97.1 0.00063 2.2E-08 65.7 6.5 59 78-139 18-85 (311)
210 3pxg_A Negative regulator of g 97.1 0.00044 1.5E-08 71.0 5.5 45 78-122 181-225 (468)
211 1n0w_A DNA repair protein RAD5 97.1 0.0027 9.1E-08 58.7 10.4 94 97-192 23-131 (243)
212 2ce7_A Cell division protein F 97.1 0.0019 6.4E-08 65.9 9.9 47 76-122 15-73 (476)
213 1sxj_D Activator 1 41 kDa subu 97.0 0.00043 1.5E-08 68.3 4.9 46 77-122 37-82 (353)
214 4b4t_I 26S protease regulatory 97.0 0.0019 6.6E-08 64.1 9.4 45 78-122 183-240 (437)
215 3hr8_A Protein RECA; alpha and 97.0 0.0018 6.1E-08 63.3 9.1 88 97-192 60-151 (356)
216 2cvh_A DNA repair and recombin 97.0 0.0018 6.3E-08 58.8 8.6 89 97-192 19-117 (220)
217 2z43_A DNA repair and recombin 96.9 0.0044 1.5E-07 60.2 10.9 94 97-191 106-214 (324)
218 2x8a_A Nuclear valosin-contain 96.9 0.0032 1.1E-07 59.5 9.6 46 77-122 10-68 (274)
219 2zr9_A Protein RECA, recombina 96.9 0.0031 1E-07 61.8 9.3 87 97-191 60-150 (349)
220 1v5w_A DMC1, meiotic recombina 96.9 0.0061 2.1E-07 59.6 11.4 94 97-191 121-230 (343)
221 2c9o_A RUVB-like 1; hexameric 96.8 0.002 6.9E-08 65.9 8.0 46 77-122 37-87 (456)
222 1u94_A RECA protein, recombina 96.8 0.0032 1.1E-07 61.7 9.1 87 97-191 62-152 (356)
223 3hu3_A Transitional endoplasmi 96.8 0.0029 9.8E-08 65.0 8.9 46 77-122 204-262 (489)
224 3co5_A Putative two-component 96.8 0.00042 1.4E-08 58.5 2.2 45 78-122 5-51 (143)
225 3io5_A Recombination and repai 96.8 0.0059 2E-07 58.0 10.1 88 99-192 29-123 (333)
226 1xp8_A RECA protein, recombina 96.8 0.0041 1.4E-07 61.2 9.2 87 97-191 73-163 (366)
227 1iy2_A ATP-dependent metallopr 96.8 0.0031 1E-07 59.8 8.1 47 76-122 39-97 (278)
228 3cf2_A TER ATPase, transitiona 96.8 0.0018 6E-08 70.1 7.0 45 78-122 205-262 (806)
229 3t15_A Ribulose bisphosphate c 96.8 0.001 3.5E-08 63.6 4.7 26 97-122 35-60 (293)
230 2b8t_A Thymidine kinase; deoxy 96.7 0.00073 2.5E-08 61.5 3.3 88 97-190 11-99 (223)
231 1ofh_A ATP-dependent HSL prote 96.7 0.0014 4.7E-08 63.2 5.2 46 77-122 15-74 (310)
232 1sxj_E Activator 1 40 kDa subu 96.7 0.00092 3.2E-08 65.9 3.8 46 77-122 14-60 (354)
233 1rz3_A Hypothetical protein rb 96.7 0.002 7E-08 57.8 5.7 42 81-122 2-46 (201)
234 2qgz_A Helicase loader, putati 96.7 0.0016 5.6E-08 62.7 5.3 41 82-122 133-176 (308)
235 3pxi_A Negative regulator of g 96.6 0.0015 5E-08 71.6 5.5 45 78-122 181-225 (758)
236 1sxj_C Activator 1 40 kDa subu 96.6 0.0017 5.9E-08 63.6 5.4 46 77-122 25-70 (340)
237 2i1q_A DNA repair and recombin 96.6 0.008 2.7E-07 58.3 10.1 93 97-190 97-214 (322)
238 2gno_A DNA polymerase III, gam 96.6 0.0082 2.8E-07 57.5 9.4 41 81-121 1-41 (305)
239 3ice_A Transcription terminati 96.5 0.0028 9.7E-08 61.8 6.1 45 96-141 172-216 (422)
240 2bjv_A PSP operon transcriptio 96.5 0.0026 8.9E-08 59.8 5.8 60 77-139 6-67 (265)
241 1ypw_A Transitional endoplasmi 96.5 0.0017 5.9E-08 71.1 5.1 45 78-122 205-262 (806)
242 1in4_A RUVB, holliday junction 96.5 0.0016 5.4E-08 63.7 4.3 46 77-122 25-75 (334)
243 2r62_A Cell division protease 96.5 0.0016 5.6E-08 61.3 4.0 47 76-122 10-68 (268)
244 3c8u_A Fructokinase; YP_612366 96.4 0.0028 9.5E-08 57.2 5.2 39 84-122 6-46 (208)
245 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0096 3.3E-07 54.4 8.7 40 97-139 22-61 (235)
246 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0062 2.1E-07 62.4 7.9 47 76-122 30-88 (499)
247 4a74_A DNA repair and recombin 96.3 0.021 7.4E-07 52.0 10.7 59 97-156 24-85 (231)
248 1qhx_A CPT, protein (chloramph 96.3 0.0023 7.9E-08 56.0 3.4 24 99-122 4-27 (178)
249 3lda_A DNA repair protein RAD5 96.3 0.035 1.2E-06 55.2 12.2 94 97-191 177-284 (400)
250 1sky_E F1-ATPase, F1-ATP synth 96.2 0.023 7.9E-07 57.2 10.9 52 99-152 152-204 (473)
251 3kb2_A SPBC2 prophage-derived 96.2 0.0024 8.3E-08 55.5 3.4 24 99-122 2-25 (173)
252 1pzn_A RAD51, DNA repair and r 96.2 0.02 6.8E-07 56.1 9.9 95 97-192 130-243 (349)
253 2px0_A Flagellar biosynthesis 96.1 0.022 7.5E-07 54.3 9.8 86 97-188 104-190 (296)
254 3vaa_A Shikimate kinase, SK; s 96.1 0.0033 1.1E-07 56.2 3.7 26 97-122 24-49 (199)
255 2r44_A Uncharacterized protein 96.1 0.0035 1.2E-07 61.1 4.2 44 77-122 27-70 (331)
256 1g8p_A Magnesium-chelatase 38 96.1 0.0026 8.9E-08 62.5 3.2 47 76-122 23-69 (350)
257 2ck3_D ATP synthase subunit be 96.1 0.036 1.2E-06 55.7 11.3 101 90-192 144-265 (482)
258 1ixz_A ATP-dependent metallopr 96.1 0.007 2.4E-07 56.4 6.0 47 76-122 15-73 (254)
259 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.0043 1.5E-07 63.7 4.8 44 77-122 22-65 (500)
260 3rfe_A Platelet glycoprotein I 96.1 0.01 3.6E-07 48.8 6.3 52 412-466 12-66 (130)
261 2ga8_A Hypothetical 39.9 kDa p 96.1 0.007 2.4E-07 58.6 5.9 43 80-122 2-48 (359)
262 3lw7_A Adenylate kinase relate 96.0 0.0031 1.1E-07 54.8 3.1 20 99-118 2-21 (179)
263 1ojl_A Transcriptional regulat 96.0 0.0056 1.9E-07 58.8 5.1 45 78-122 3-49 (304)
264 3e70_C DPA, signal recognition 96.0 0.048 1.6E-06 52.7 11.6 57 97-156 128-185 (328)
265 1zp6_A Hypothetical protein AT 96.0 0.0043 1.5E-07 55.0 3.9 25 97-121 8-32 (191)
266 3uie_A Adenylyl-sulfate kinase 96.0 0.0057 2E-07 54.7 4.6 28 95-122 22-49 (200)
267 3hws_A ATP-dependent CLP prote 96.0 0.0064 2.2E-07 60.1 5.4 44 79-122 17-75 (363)
268 2hf9_A Probable hydrogenase ni 96.0 0.0074 2.5E-07 55.0 5.5 41 82-122 22-62 (226)
269 3trf_A Shikimate kinase, SK; a 96.0 0.0042 1.4E-07 54.7 3.6 25 98-122 5-29 (185)
270 1kag_A SKI, shikimate kinase I 95.9 0.0036 1.2E-07 54.5 3.0 24 99-122 5-28 (173)
271 1vma_A Cell division protein F 95.9 0.02 6.7E-07 54.8 8.3 103 83-189 81-195 (306)
272 1ly1_A Polynucleotide kinase; 95.9 0.0043 1.5E-07 54.3 3.5 22 99-120 3-24 (181)
273 1a5t_A Delta prime, HOLB; zinc 95.9 0.034 1.2E-06 54.1 10.1 41 82-122 7-48 (334)
274 1um8_A ATP-dependent CLP prote 95.9 0.008 2.8E-07 59.7 5.6 45 78-122 22-96 (376)
275 2yvu_A Probable adenylyl-sulfa 95.9 0.0053 1.8E-07 54.2 3.8 26 97-122 12-37 (186)
276 4eun_A Thermoresistant glucoki 95.9 0.0051 1.7E-07 55.0 3.7 27 96-122 27-53 (200)
277 1zuh_A Shikimate kinase; alpha 95.8 0.0048 1.6E-07 53.4 3.4 26 97-122 6-31 (168)
278 1odf_A YGR205W, hypothetical 3 95.8 0.0084 2.9E-07 57.0 5.4 27 96-122 29-55 (290)
279 3dm5_A SRP54, signal recogniti 95.8 0.049 1.7E-06 54.6 11.0 57 97-156 99-156 (443)
280 3t61_A Gluconokinase; PSI-biol 95.8 0.0043 1.5E-07 55.6 3.1 25 98-122 18-42 (202)
281 1nks_A Adenylate kinase; therm 95.8 0.0053 1.8E-07 54.3 3.7 24 99-122 2-25 (194)
282 2wsm_A Hydrogenase expression/ 95.8 0.007 2.4E-07 55.0 4.5 42 81-122 13-54 (221)
283 1kgd_A CASK, peripheral plasma 95.8 0.005 1.7E-07 54.1 3.4 24 99-122 6-29 (180)
284 3iij_A Coilin-interacting nucl 95.8 0.0051 1.8E-07 53.9 3.3 25 98-122 11-35 (180)
285 2dr3_A UPF0273 protein PH0284; 95.8 0.023 7.8E-07 52.4 8.0 41 97-140 22-62 (247)
286 2rhm_A Putative kinase; P-loop 95.7 0.0064 2.2E-07 53.9 3.9 25 98-122 5-29 (193)
287 1kht_A Adenylate kinase; phosp 95.7 0.0059 2E-07 54.0 3.5 24 99-122 4-27 (192)
288 1knq_A Gluconate kinase; ALFA/ 95.7 0.0069 2.4E-07 52.8 3.9 25 98-122 8-32 (175)
289 1j8m_F SRP54, signal recogniti 95.7 0.056 1.9E-06 51.4 10.4 89 98-189 98-189 (297)
290 2ffh_A Protein (FFH); SRP54, s 95.7 0.042 1.5E-06 54.9 9.8 55 98-156 98-154 (425)
291 1via_A Shikimate kinase; struc 95.6 0.0056 1.9E-07 53.4 3.0 24 99-122 5-28 (175)
292 1y63_A LMAJ004144AAA protein; 95.6 0.0071 2.4E-07 53.3 3.7 24 98-121 10-33 (184)
293 2c95_A Adenylate kinase 1; tra 95.6 0.007 2.4E-07 53.7 3.7 26 97-122 8-33 (196)
294 1fx0_B ATP synthase beta chain 95.6 0.047 1.6E-06 55.1 9.9 101 90-192 156-278 (498)
295 2qor_A Guanylate kinase; phosp 95.6 0.0061 2.1E-07 54.7 3.3 26 97-122 11-36 (204)
296 2ze6_A Isopentenyl transferase 95.6 0.0069 2.4E-07 56.5 3.6 24 99-122 2-25 (253)
297 3bh0_A DNAB-like replicative h 95.6 0.044 1.5E-06 52.8 9.4 51 97-152 67-117 (315)
298 1ukz_A Uridylate kinase; trans 95.6 0.0081 2.8E-07 53.8 3.9 26 97-122 14-39 (203)
299 1tev_A UMP-CMP kinase; ploop, 95.6 0.0077 2.6E-07 53.4 3.7 25 98-122 3-27 (196)
300 2iyv_A Shikimate kinase, SK; t 95.6 0.0059 2E-07 53.7 2.9 24 99-122 3-26 (184)
301 2jaq_A Deoxyguanosine kinase; 95.6 0.007 2.4E-07 54.1 3.5 23 100-122 2-24 (205)
302 3kl4_A SRP54, signal recogniti 95.6 0.053 1.8E-06 54.3 10.1 56 98-156 97-153 (433)
303 3tau_A Guanylate kinase, GMP k 95.5 0.0084 2.9E-07 54.0 3.8 26 97-122 7-32 (208)
304 1uf9_A TT1252 protein; P-loop, 95.5 0.0088 3E-07 53.4 4.0 26 96-121 6-31 (203)
305 1uj2_A Uridine-cytidine kinase 95.5 0.0081 2.8E-07 55.9 3.8 27 96-122 20-46 (252)
306 2bdt_A BH3686; alpha-beta prot 95.5 0.008 2.7E-07 53.1 3.5 23 99-121 3-25 (189)
307 2bbw_A Adenylate kinase 4, AK4 95.5 0.0082 2.8E-07 55.7 3.7 26 97-122 26-51 (246)
308 2qt1_A Nicotinamide riboside k 95.5 0.009 3.1E-07 53.7 3.9 26 97-122 20-45 (207)
309 1gvn_B Zeta; postsegregational 95.5 0.014 4.8E-07 55.4 5.4 26 97-122 32-57 (287)
310 4h09_A Hypothetical leucine ri 95.5 0.087 3E-06 52.1 11.5 121 385-510 216-340 (379)
311 3tr0_A Guanylate kinase, GMP k 95.5 0.0088 3E-07 53.5 3.8 25 98-122 7-31 (205)
312 1cke_A CK, MSSA, protein (cyti 95.5 0.0078 2.7E-07 54.9 3.5 24 99-122 6-29 (227)
313 2j41_A Guanylate kinase; GMP, 95.5 0.0091 3.1E-07 53.5 3.8 25 98-122 6-30 (207)
314 1e6c_A Shikimate kinase; phosp 95.4 0.0072 2.5E-07 52.5 3.0 24 99-122 3-26 (173)
315 2bwj_A Adenylate kinase 5; pho 95.4 0.0085 2.9E-07 53.3 3.5 25 98-122 12-36 (199)
316 3tlx_A Adenylate kinase 2; str 95.4 0.017 5.7E-07 53.4 5.6 42 81-122 10-53 (243)
317 2if2_A Dephospho-COA kinase; a 95.4 0.008 2.7E-07 53.8 3.3 22 99-120 2-23 (204)
318 3asz_A Uridine kinase; cytidin 95.4 0.0093 3.2E-07 53.7 3.8 26 97-122 5-30 (211)
319 3cm0_A Adenylate kinase; ATP-b 95.4 0.009 3.1E-07 52.5 3.6 24 99-122 5-28 (186)
320 1g41_A Heat shock protein HSLU 95.4 0.011 3.8E-07 59.4 4.6 46 77-122 15-74 (444)
321 2xxa_A Signal recognition part 95.4 0.11 3.8E-06 52.2 11.9 55 83-139 76-139 (433)
322 2vli_A Antibiotic resistance p 95.4 0.0064 2.2E-07 53.3 2.6 25 98-122 5-29 (183)
323 3cmu_A Protein RECA, recombina 95.4 0.036 1.2E-06 65.5 9.3 86 97-190 1426-1515(2050)
324 2plr_A DTMP kinase, probable t 95.4 0.0099 3.4E-07 53.5 3.9 24 99-122 5-28 (213)
325 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0095 3.3E-07 55.7 3.8 25 98-122 4-28 (260)
326 4gp7_A Metallophosphoesterase; 95.4 0.0086 3E-07 52.0 3.2 24 97-120 8-31 (171)
327 3a00_A Guanylate kinase, GMP k 95.4 0.0076 2.6E-07 53.2 2.9 24 99-122 2-25 (186)
328 2yhs_A FTSY, cell division pro 95.3 0.062 2.1E-06 54.5 9.8 26 97-122 292-317 (503)
329 1ex7_A Guanylate kinase; subst 95.3 0.0061 2.1E-07 53.6 2.2 24 99-122 2-25 (186)
330 3tqc_A Pantothenate kinase; bi 95.3 0.016 5.6E-07 55.7 5.3 43 80-122 70-116 (321)
331 2grj_A Dephospho-COA kinase; T 95.3 0.0096 3.3E-07 52.8 3.5 26 97-122 11-36 (192)
332 1jjv_A Dephospho-COA kinase; P 95.3 0.009 3.1E-07 53.6 3.4 22 99-120 3-24 (206)
333 2pt5_A Shikimate kinase, SK; a 95.3 0.0096 3.3E-07 51.4 3.4 23 100-122 2-24 (168)
334 1qf9_A UMP/CMP kinase, protein 95.3 0.01 3.5E-07 52.4 3.7 25 98-122 6-30 (194)
335 1qvr_A CLPB protein; coiled co 95.3 0.012 4.1E-07 65.2 4.9 45 78-122 559-612 (854)
336 2cdn_A Adenylate kinase; phosp 95.3 0.01 3.5E-07 53.1 3.5 25 98-122 20-44 (201)
337 2pbr_A DTMP kinase, thymidylat 95.2 0.01 3.6E-07 52.5 3.5 23 100-122 2-24 (195)
338 1ls1_A Signal recognition part 95.2 0.067 2.3E-06 50.9 9.2 90 97-189 97-189 (295)
339 3umf_A Adenylate kinase; rossm 95.2 0.012 4.2E-07 53.1 3.8 26 97-122 28-53 (217)
340 2z0h_A DTMP kinase, thymidylat 95.2 0.024 8.3E-07 50.2 5.8 23 100-122 2-24 (197)
341 2p5t_B PEZT; postsegregational 95.2 0.014 4.9E-07 54.3 4.4 26 97-122 31-56 (253)
342 2wwf_A Thymidilate kinase, put 95.2 0.012 4.1E-07 53.0 3.7 25 98-122 10-34 (212)
343 1ye8_A Protein THEP1, hypothet 95.2 0.011 3.8E-07 51.7 3.4 23 100-122 2-24 (178)
344 1aky_A Adenylate kinase; ATP:A 95.2 0.012 4.2E-07 53.4 3.7 25 98-122 4-28 (220)
345 3vr4_D V-type sodium ATPase su 95.2 0.029 1E-06 56.0 6.6 92 97-191 150-259 (465)
346 1xjc_A MOBB protein homolog; s 95.2 0.013 4.3E-07 50.6 3.5 26 97-122 3-28 (169)
347 3fwy_A Light-independent proto 95.2 0.02 6.9E-07 55.0 5.4 41 96-139 46-86 (314)
348 2j37_W Signal recognition part 95.1 0.13 4.5E-06 52.6 11.6 39 97-138 100-138 (504)
349 3end_A Light-independent proto 95.1 0.021 7.3E-07 54.8 5.5 44 95-141 38-81 (307)
350 3ney_A 55 kDa erythrocyte memb 95.1 0.013 4.5E-07 52.0 3.6 26 97-122 18-43 (197)
351 1nn5_A Similar to deoxythymidy 95.1 0.013 4.4E-07 52.8 3.7 25 98-122 9-33 (215)
352 1zd8_A GTP:AMP phosphotransfer 95.1 0.012 4.2E-07 53.7 3.5 25 98-122 7-31 (227)
353 1lvg_A Guanylate kinase, GMP k 95.1 0.01 3.6E-07 52.9 2.9 25 98-122 4-28 (198)
354 3fb4_A Adenylate kinase; psych 95.0 0.013 4.4E-07 53.0 3.5 23 100-122 2-24 (216)
355 4gt6_A Cell surface protein; l 95.0 0.13 4.3E-06 51.3 11.1 104 404-512 261-366 (394)
356 3aez_A Pantothenate kinase; tr 95.0 0.015 5E-07 55.9 3.9 27 96-122 88-114 (312)
357 4e22_A Cytidylate kinase; P-lo 95.0 0.013 4.5E-07 54.5 3.4 26 97-122 26-51 (252)
358 1zu4_A FTSY; GTPase, signal re 95.0 0.039 1.3E-06 53.1 6.8 39 97-138 104-142 (320)
359 2jeo_A Uridine-cytidine kinase 95.0 0.016 5.5E-07 53.6 4.0 27 96-122 23-49 (245)
360 1zak_A Adenylate kinase; ATP:A 95.0 0.014 4.7E-07 53.1 3.5 25 98-122 5-29 (222)
361 2v54_A DTMP kinase, thymidylat 95.0 0.015 5.2E-07 51.9 3.7 25 98-122 4-28 (204)
362 1m7g_A Adenylylsulfate kinase; 94.9 0.021 7.1E-07 51.5 4.6 27 96-122 23-49 (211)
363 3dl0_A Adenylate kinase; phosp 94.9 0.014 4.9E-07 52.7 3.4 23 100-122 2-24 (216)
364 2pez_A Bifunctional 3'-phospho 94.9 0.018 6E-07 50.4 3.8 25 98-122 5-29 (179)
365 1znw_A Guanylate kinase, GMP k 94.9 0.017 5.7E-07 52.0 3.7 26 97-122 19-44 (207)
366 4fs7_A Uncharacterized protein 94.9 0.12 4.2E-06 51.4 10.5 124 381-511 248-374 (394)
367 1gtv_A TMK, thymidylate kinase 94.8 0.0086 2.9E-07 54.0 1.7 23 100-122 2-24 (214)
368 3k1j_A LON protease, ATP-depen 94.8 0.022 7.7E-07 60.3 5.0 43 78-122 42-84 (604)
369 1z6g_A Guanylate kinase; struc 94.8 0.015 5.3E-07 52.7 3.2 26 97-122 22-47 (218)
370 2f6r_A COA synthase, bifunctio 94.8 0.018 6.2E-07 54.5 3.8 23 97-119 74-96 (281)
371 2r6a_A DNAB helicase, replicat 94.8 0.34 1.2E-05 49.2 13.5 50 97-150 202-251 (454)
372 1tue_A Replication protein E1; 94.7 0.03 1E-06 49.6 4.8 39 84-122 43-82 (212)
373 4h09_A Hypothetical leucine ri 94.7 0.11 3.7E-06 51.4 9.6 118 381-503 235-356 (379)
374 3io3_A DEHA2D07832P; chaperone 94.7 0.04 1.4E-06 53.7 6.3 53 92-145 12-64 (348)
375 1vht_A Dephospho-COA kinase; s 94.7 0.02 6.7E-07 51.9 3.8 23 98-120 4-26 (218)
376 3nwj_A ATSK2; P loop, shikimat 94.7 0.015 5.2E-07 53.8 3.0 25 98-122 48-72 (250)
377 4fs7_A Uncharacterized protein 94.7 0.24 8.2E-06 49.2 12.0 118 386-510 230-350 (394)
378 1htw_A HI0065; nucleotide-bind 94.6 0.023 8E-07 48.5 3.9 27 96-122 31-57 (158)
379 4a1f_A DNAB helicase, replicat 94.6 0.095 3.3E-06 50.7 8.6 50 97-151 45-94 (338)
380 3p32_A Probable GTPase RV1496/ 94.6 0.068 2.3E-06 52.4 7.8 37 86-122 65-103 (355)
381 1rj9_A FTSY, signal recognitio 94.6 0.03 1E-06 53.5 5.1 26 97-122 101-126 (304)
382 3ake_A Cytidylate kinase; CMP 94.6 0.019 6.5E-07 51.4 3.5 23 100-122 4-26 (208)
383 3pxi_A Negative regulator of g 94.6 0.032 1.1E-06 60.9 5.8 60 77-139 491-559 (758)
384 3iqw_A Tail-anchored protein t 94.6 0.049 1.7E-06 52.8 6.5 51 92-145 10-60 (334)
385 1sq5_A Pantothenate kinase; P- 94.6 0.038 1.3E-06 53.0 5.6 27 96-122 78-104 (308)
386 3r20_A Cytidylate kinase; stru 94.6 0.02 7E-07 52.2 3.5 25 98-122 9-33 (233)
387 3hjn_A DTMP kinase, thymidylat 94.5 0.094 3.2E-06 46.5 7.7 23 100-122 2-24 (197)
388 1s96_A Guanylate kinase, GMP k 94.5 0.023 7.7E-07 51.6 3.6 26 97-122 15-40 (219)
389 3be4_A Adenylate kinase; malar 94.5 0.021 7.1E-07 51.7 3.4 24 99-122 6-29 (217)
390 3d3q_A TRNA delta(2)-isopenten 94.4 0.023 7.8E-07 54.9 3.6 24 99-122 8-31 (340)
391 1e4v_A Adenylate kinase; trans 94.4 0.022 7.6E-07 51.4 3.5 23 100-122 2-24 (214)
392 2xb4_A Adenylate kinase; ATP-b 94.4 0.023 7.8E-07 51.7 3.5 23 100-122 2-24 (223)
393 1ak2_A Adenylate kinase isoenz 94.4 0.026 9E-07 51.7 3.9 25 98-122 16-40 (233)
394 2f1r_A Molybdopterin-guanine d 94.4 0.014 4.7E-07 50.6 1.9 24 99-122 3-26 (171)
395 3m6a_A ATP-dependent protease 94.3 0.042 1.4E-06 57.3 5.7 44 79-122 83-132 (543)
396 3sr0_A Adenylate kinase; phosp 94.3 0.025 8.6E-07 50.7 3.5 23 100-122 2-24 (206)
397 1np6_A Molybdopterin-guanine d 94.3 0.027 9.4E-07 48.9 3.5 25 98-122 6-30 (174)
398 3rfe_A Platelet glycoprotein I 94.3 0.075 2.5E-06 43.6 6.0 55 390-445 12-68 (130)
399 3gqb_B V-type ATP synthase bet 94.3 0.053 1.8E-06 54.1 5.9 94 97-191 146-262 (464)
400 1q57_A DNA primase/helicase; d 94.3 0.13 4.4E-06 53.1 9.2 50 98-151 242-291 (503)
401 2i3b_A HCR-ntpase, human cance 94.2 0.022 7.7E-07 50.2 2.9 24 99-122 2-25 (189)
402 3tif_A Uncharacterized ABC tra 94.2 0.035 1.2E-06 50.9 4.3 35 97-135 30-64 (235)
403 3l0o_A Transcription terminati 94.2 0.095 3.2E-06 51.1 7.3 51 89-140 165-216 (427)
404 3cmw_A Protein RECA, recombina 94.2 0.088 3E-06 61.4 8.3 87 97-191 1430-1520(1706)
405 3lnc_A Guanylate kinase, GMP k 94.1 0.019 6.6E-07 52.5 2.4 25 98-122 27-52 (231)
406 1g8f_A Sulfate adenylyltransfe 94.1 0.046 1.6E-06 56.0 5.3 44 79-122 374-419 (511)
407 3crm_A TRNA delta(2)-isopenten 94.1 0.029 9.9E-07 53.8 3.6 24 99-122 6-29 (323)
408 4gt6_A Cell surface protein; l 94.1 0.17 5.8E-06 50.3 9.4 122 381-510 260-385 (394)
409 2ehv_A Hypothetical protein PH 94.1 0.027 9.2E-07 52.0 3.3 24 97-120 29-52 (251)
410 2onk_A Molybdate/tungstate ABC 94.1 0.03 1E-06 51.5 3.5 26 96-122 23-48 (240)
411 3b9q_A Chloroplast SRP recepto 94.0 0.033 1.1E-06 53.2 3.8 25 98-122 100-124 (302)
412 3a8t_A Adenylate isopentenyltr 94.0 0.034 1.2E-06 53.5 3.8 25 98-122 40-64 (339)
413 4eaq_A DTMP kinase, thymidylat 94.0 0.066 2.3E-06 48.8 5.6 26 97-122 25-50 (229)
414 1a7j_A Phosphoribulokinase; tr 94.0 0.017 6E-07 54.8 1.8 26 97-122 4-29 (290)
415 3b85_A Phosphate starvation-in 94.0 0.03 1E-06 50.3 3.2 23 99-121 23-45 (208)
416 2q6t_A DNAB replication FORK h 94.0 0.21 7.1E-06 50.6 9.9 51 97-151 199-249 (444)
417 3cf2_A TER ATPase, transitiona 94.0 0.067 2.3E-06 57.9 6.4 46 77-122 477-535 (806)
418 3cmu_A Protein RECA, recombina 93.9 0.12 4.2E-06 61.1 9.0 87 97-191 382-472 (2050)
419 3f9v_A Minichromosome maintena 93.9 0.019 6.5E-07 60.5 2.1 47 76-122 294-351 (595)
420 2pcj_A ABC transporter, lipopr 93.9 0.028 9.5E-07 51.2 3.0 26 97-122 29-54 (224)
421 3gfo_A Cobalt import ATP-bindi 93.9 0.042 1.4E-06 51.6 4.2 35 97-135 33-67 (275)
422 3cmw_A Protein RECA, recombina 93.9 0.11 3.7E-06 60.8 8.3 88 97-192 382-473 (1706)
423 3exa_A TRNA delta(2)-isopenten 93.9 0.039 1.3E-06 52.4 3.9 25 98-122 3-27 (322)
424 1ltq_A Polynucleotide kinase; 93.9 0.033 1.1E-06 53.2 3.5 23 99-121 3-25 (301)
425 1b0u_A Histidine permease; ABC 93.8 0.044 1.5E-06 51.2 4.2 35 97-135 31-65 (262)
426 3bgw_A DNAB-like replicative h 93.8 0.15 5.2E-06 51.5 8.4 41 97-140 196-236 (444)
427 4g1u_C Hemin import ATP-bindin 93.8 0.048 1.6E-06 51.0 4.3 26 97-122 36-61 (266)
428 1cp2_A CP2, nitrogenase iron p 93.7 0.08 2.7E-06 49.5 5.8 39 99-140 2-40 (269)
429 3zvl_A Bifunctional polynucleo 93.7 0.038 1.3E-06 55.6 3.7 26 97-122 257-282 (416)
430 2ff7_A Alpha-hemolysin translo 93.7 0.05 1.7E-06 50.3 4.3 35 97-135 34-68 (247)
431 2cbz_A Multidrug resistance-as 93.7 0.038 1.3E-06 50.7 3.4 26 97-122 30-55 (237)
432 1q3t_A Cytidylate kinase; nucl 93.6 0.045 1.6E-06 50.2 3.9 26 97-122 15-40 (236)
433 1g5t_A COB(I)alamin adenosyltr 93.6 0.067 2.3E-06 47.1 4.6 37 99-138 29-65 (196)
434 4edh_A DTMP kinase, thymidylat 93.5 0.14 4.8E-06 46.0 6.9 25 98-122 6-30 (213)
435 2c61_A A-type ATP synthase non 93.5 0.11 3.6E-06 52.3 6.6 95 97-192 151-261 (469)
436 1r6b_X CLPA protein; AAA+, N-t 93.5 0.073 2.5E-06 58.1 5.9 46 77-122 458-512 (758)
437 2r8r_A Sensor protein; KDPD, P 93.5 0.069 2.4E-06 48.1 4.7 38 100-140 8-45 (228)
438 2ocp_A DGK, deoxyguanosine kin 93.5 0.048 1.6E-06 50.2 3.8 25 98-122 2-26 (241)
439 2afh_E Nitrogenase iron protei 93.5 0.068 2.3E-06 50.7 5.0 40 98-140 2-41 (289)
440 2d2e_A SUFC protein; ABC-ATPas 93.5 0.041 1.4E-06 51.0 3.3 25 97-121 28-52 (250)
441 2og2_A Putative signal recogni 93.5 0.047 1.6E-06 53.3 3.8 25 98-122 157-181 (359)
442 1ji0_A ABC transporter; ATP bi 93.5 0.038 1.3E-06 50.9 3.0 35 97-135 31-65 (240)
443 2ixe_A Antigen peptide transpo 93.4 0.065 2.2E-06 50.3 4.7 36 96-135 43-78 (271)
444 1sgw_A Putative ABC transporte 93.4 0.033 1.1E-06 50.2 2.5 26 97-122 34-59 (214)
445 1yrb_A ATP(GTP)binding protein 93.4 0.048 1.6E-06 50.8 3.7 26 97-122 13-38 (262)
446 3foz_A TRNA delta(2)-isopenten 93.4 0.046 1.6E-06 51.8 3.6 25 98-122 10-34 (316)
447 3cr8_A Sulfate adenylyltranfer 93.4 0.061 2.1E-06 55.8 4.8 26 97-122 368-393 (552)
448 1cr0_A DNA primase/helicase; R 93.4 0.099 3.4E-06 49.7 6.0 52 97-152 34-85 (296)
449 1g6h_A High-affinity branched- 93.4 0.039 1.3E-06 51.4 3.0 35 97-135 32-66 (257)
450 2olj_A Amino acid ABC transpor 93.4 0.045 1.5E-06 51.1 3.4 36 96-135 48-83 (263)
451 2zu0_C Probable ATP-dependent 93.3 0.044 1.5E-06 51.3 3.3 25 97-121 45-69 (267)
452 2pze_A Cystic fibrosis transme 93.3 0.041 1.4E-06 50.3 3.0 26 97-122 33-58 (229)
453 2qe7_A ATP synthase subunit al 93.3 0.15 5.2E-06 51.5 7.3 98 90-192 153-266 (502)
454 1mv5_A LMRA, multidrug resista 93.3 0.049 1.7E-06 50.2 3.5 27 96-122 26-52 (243)
455 1fx0_A ATP synthase alpha chai 93.3 0.14 4.8E-06 51.8 7.0 90 97-191 162-266 (507)
456 2qmh_A HPR kinase/phosphorylas 93.3 0.049 1.7E-06 48.0 3.2 25 98-122 34-58 (205)
457 2v9p_A Replication protein E1; 93.3 0.052 1.8E-06 51.7 3.7 27 96-122 124-150 (305)
458 2r9v_A ATP synthase subunit al 93.2 0.18 6.1E-06 51.0 7.6 97 90-191 166-278 (515)
459 3oaa_A ATP synthase subunit al 93.2 0.31 1E-05 49.2 9.3 93 96-192 160-266 (513)
460 2vp4_A Deoxynucleoside kinase; 93.2 0.041 1.4E-06 50.3 2.8 25 97-121 19-43 (230)
461 1vpl_A ABC transporter, ATP-bi 93.2 0.051 1.7E-06 50.5 3.4 35 97-135 40-74 (256)
462 4dzz_A Plasmid partitioning pr 93.1 0.085 2.9E-06 47.0 4.8 44 99-145 2-46 (206)
463 2ghi_A Transport protein; mult 93.1 0.052 1.8E-06 50.6 3.4 26 97-122 45-70 (260)
464 3v9p_A DTMP kinase, thymidylat 93.1 0.13 4.4E-06 46.7 6.0 25 98-122 25-49 (227)
465 3lv8_A DTMP kinase, thymidylat 93.1 0.16 5.4E-06 46.4 6.6 36 98-135 27-62 (236)
466 4hlc_A DTMP kinase, thymidylat 93.1 0.16 5.6E-06 45.3 6.6 24 99-122 3-26 (205)
467 1oix_A RAS-related protein RAB 93.1 0.054 1.8E-06 47.8 3.3 25 98-122 29-53 (191)
468 2eyu_A Twitching motility prot 93.1 0.063 2.1E-06 50.1 3.9 27 96-122 23-49 (261)
469 1svm_A Large T antigen; AAA+ f 93.1 0.057 2E-06 53.2 3.8 27 96-122 167-193 (377)
470 2qi9_C Vitamin B12 import ATP- 93.1 0.047 1.6E-06 50.5 3.0 26 97-122 25-50 (249)
471 2yz2_A Putative ABC transporte 93.0 0.047 1.6E-06 51.1 3.0 35 97-135 32-66 (266)
472 2ged_A SR-beta, signal recogni 93.0 0.11 3.7E-06 45.6 5.3 26 97-122 47-72 (193)
473 3upu_A ATP-dependent DNA helic 93.0 0.16 5.5E-06 51.7 7.1 41 81-122 29-69 (459)
474 3kjh_A CO dehydrogenase/acetyl 93.0 0.11 3.8E-06 47.8 5.5 42 101-145 3-44 (254)
475 3mfy_A V-type ATP synthase alp 93.0 0.32 1.1E-05 49.7 8.9 56 90-150 218-275 (588)
476 2ihy_A ABC transporter, ATP-bi 93.0 0.049 1.7E-06 51.3 3.0 26 97-122 46-71 (279)
477 2nq2_C Hypothetical ABC transp 92.9 0.049 1.7E-06 50.5 2.9 26 97-122 30-55 (253)
478 1nlf_A Regulatory protein REPA 92.9 0.054 1.8E-06 51.1 3.3 26 97-122 29-54 (279)
479 2v3c_C SRP54, signal recogniti 92.9 0.079 2.7E-06 53.3 4.6 25 98-122 99-123 (432)
480 4tmk_A Protein (thymidylate ki 92.8 0.18 6.1E-06 45.3 6.5 24 99-122 4-27 (213)
481 2dyk_A GTP-binding protein; GT 92.8 0.069 2.4E-06 45.1 3.6 24 99-122 2-25 (161)
482 3gmt_A Adenylate kinase; ssgci 92.8 0.06 2.1E-06 48.8 3.2 24 99-122 9-32 (230)
483 3vr4_A V-type sodium ATPase ca 92.8 0.31 1.1E-05 49.9 8.7 56 90-150 223-280 (600)
484 2wji_A Ferrous iron transport 92.7 0.064 2.2E-06 45.9 3.2 23 99-121 4-26 (165)
485 3eph_A TRNA isopentenyltransfe 92.7 0.07 2.4E-06 52.6 3.8 24 99-122 3-26 (409)
486 2f9l_A RAB11B, member RAS onco 92.7 0.061 2.1E-06 47.7 3.1 24 99-122 6-29 (199)
487 2zej_A Dardarin, leucine-rich 92.7 0.053 1.8E-06 47.4 2.6 22 100-121 4-25 (184)
488 3nh6_A ATP-binding cassette SU 92.6 0.075 2.6E-06 50.7 3.8 27 96-122 78-104 (306)
489 2ck3_A ATP synthase subunit al 92.6 0.22 7.4E-06 50.5 7.3 101 90-191 153-273 (510)
490 2ce2_X GTPase HRAS; signaling 92.6 0.065 2.2E-06 45.4 3.1 23 100-122 5-27 (166)
491 1p5z_B DCK, deoxycytidine kina 92.6 0.047 1.6E-06 51.0 2.3 26 97-122 23-48 (263)
492 2woj_A ATPase GET3; tail-ancho 92.6 0.18 6.3E-06 49.2 6.6 47 96-145 16-64 (354)
493 4gzl_A RAS-related C3 botulinu 92.5 0.076 2.6E-06 47.3 3.6 42 81-122 13-54 (204)
494 2h92_A Cytidylate kinase; ross 92.5 0.062 2.1E-06 48.5 3.0 24 99-122 4-27 (219)
495 3ld9_A DTMP kinase, thymidylat 92.5 0.091 3.1E-06 47.5 4.0 27 96-122 19-45 (223)
496 1p9r_A General secretion pathw 92.5 0.22 7.6E-06 49.7 7.2 34 88-122 158-191 (418)
497 3sop_A Neuronal-specific septi 92.5 0.069 2.3E-06 50.1 3.3 23 100-122 4-26 (270)
498 3llm_A ATP-dependent RNA helic 92.4 0.61 2.1E-05 42.4 9.7 101 88-191 68-187 (235)
499 2pjz_A Hypothetical protein ST 92.4 0.064 2.2E-06 50.0 3.0 24 98-121 30-53 (263)
500 3fdi_A Uncharacterized protein 92.4 0.078 2.7E-06 47.2 3.4 24 99-122 7-30 (201)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.6e-41 Score=358.24 Aligned_cols=265 Identities=15% Similarity=0.134 Sum_probs=207.9
Q ss_pred CCcccchHHHHHHHHHHhccC---CCeEEEEEcCCCCcHHHHHHHHHh--hhhcccCCCCeEEEEEECCcc--CHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVEE---PAGIVGLYGMGGVGKTTLLTHINN--KFLESTTNFNYVIWVVVSKDL--RLENIQE 148 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~ 148 (552)
.+..|||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +. .+..+|++++||++++.+ +...++.
T Consensus 127 ~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 127 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 344359999999999999753 689999999999999999999998 44 568899999999999985 8899999
Q ss_pred HHHHHcCCCCc-----ccccccHHHHHHHHHHHhccc-eEEEEEcccccccccccccccCCCCCCCccchHH--------
Q 048813 149 TIGEKIGLLND-----TWKNRRIEQKALDIFRILKEQ-KFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD-------- 214 (552)
Q Consensus 149 ~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T-------- 214 (552)
.|+.+++.... .....+.++....+++.|+++ ||||||||||+..++ .+. ..+||+||+|
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHH
Confidence 99999986522 112334566788899999996 999999999998754 111 1267888877
Q ss_pred -----------------------------------------HHhhHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 048813 215 -----------------------------------------GTAKECGGLPLALITIGRAMACKKTPEEWTYAIEVLRTS 253 (552)
Q Consensus 215 -----------------------------------------~i~~~c~glPLai~~i~~~l~~~~~~~~w~~~~~~l~~~ 253 (552)
+|+++|+|+||||+++|+.++.+ .|..+ +.+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHHH
Confidence 78999999999999999998753 25443 333332
Q ss_pred CCCCCCCCcccchhhhhhccCCCCcchhHHHh-----------hhcCCCCCcccChHHHHHHHHHc--CCccccc-chhh
Q 048813 254 SSQFPGLGNEVYPLLKFSYDSLPGDTIRSCLL-----------YCCLYPEDYCISKENLIDCWIGE--GFLTERD-RFGE 319 (552)
Q Consensus 254 ~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~W~a~--g~~~~~~-~~~~ 319 (552)
.+... ...+..++.+||+.||+ +++.||+ |||+||+++.|+ +.+|+|+ ||+...+ ....
T Consensus 355 l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 355 LESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred hhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 11111 24788999999999998 8999999 999999999998 8899999 9998744 4455
Q ss_pred hhhHHHHHHHHHHhccceec---CCCcEEEchhHHHHHHHHHhh
Q 048813 320 QNQGYYILGILLHACLLEEG---GDGEVKMHDVVRDMALWIACD 360 (552)
Q Consensus 320 ~~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~~~~~~~~~~ 360 (552)
++.+. ++++|+++||++.. ...+|.|||++|++|++++.+
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 66666 99999999999875 345799999999999988765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-33 Score=330.44 Aligned_cols=265 Identities=19% Similarity=0.235 Sum_probs=213.8
Q ss_pred CCCcccchHHHHHHHHHHhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCC-CeEEEEEECCccC--HHHHHHH
Q 048813 75 TEPTVIGLQSQLEQVWRCLV--EEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNF-NYVIWVVVSKDLR--LENIQET 149 (552)
Q Consensus 75 ~~~~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f-~~~~wv~~s~~~~--~~~~~~~ 149 (552)
..+.||||++++++|.++|. ++..++|+|+||||+||||||+++|++......+| +.++|+++++..+ ....+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 34569999999999999995 35789999999999999999999999853334545 6888999998543 4445667
Q ss_pred HHHHcCCCCc--ccccccHHHHHHHHHHHhccc--eEEEEEcccccccccccccccCCCCCCCccchHH-----------
Q 048813 150 IGEKIGLLND--TWKNRRIEQKALDIFRILKEQ--KFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD----------- 214 (552)
Q Consensus 150 i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T----------- 214 (552)
++..++.... .....+.++....++..+.++ |+||||||||+..+|..+ .+|++||+|
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 7777765432 113456677888888888877 999999999998877654 467788887
Q ss_pred -------------------------------------HHhhHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHhccCCCC
Q 048813 215 -------------------------------------GTAKECGGLPLALITIGRAMACKKTPEEWTYAIEVLRTSSSQF 257 (552)
Q Consensus 215 -------------------------------------~i~~~c~glPLai~~i~~~l~~~~~~~~w~~~~~~l~~~~~~~ 257 (552)
+|+++|+|+||||+++|++|+.+. ..|..+++.+....+..
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhh
Confidence 799999999999999999998643 57999999887764332
Q ss_pred C-----CCCcccchhhhhhccCCCCcchhHHHhhhcCCCCCcccChHHHHHHHHHcCCcccccchhhhhhHHHHHHHHHH
Q 048813 258 P-----GLGNEVYPLLKFSYDSLPGDTIRSCLLYCCLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYYILGILLH 332 (552)
Q Consensus 258 ~-----~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~~~~~~~~~~~~~~l~~L~~ 332 (552)
- .....+..++.+||+.||+ +.|.||+||++||+++.|+++.++.+|.++ ...+..++++|++
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~ 420 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVN 420 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHh
Confidence 1 1113689999999999999 899999999999999999999999999654 3466778999999
Q ss_pred hccceecCCC---cEEEchhHHHHHHHHHhh
Q 048813 333 ACLLEEGGDG---EVKMHDVVRDMALWIACD 360 (552)
Q Consensus 333 ~sll~~~~~~---~~~mHdlv~~~~~~~~~~ 360 (552)
+||++....+ +|+||+++|++++..+.+
T Consensus 421 ~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 421 KSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp TTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred ccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 9999976444 499999999999888654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.1e-34 Score=309.58 Aligned_cols=246 Identities=14% Similarity=0.187 Sum_probs=198.2
Q ss_pred CcccchHHHHHHHHHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCe-EEEEEECCccCHHHHHHHHHHHc
Q 048813 77 PTVIGLQSQLEQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNY-VIWVVVSKDLRLENIQETIGEKI 154 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 154 (552)
+..|||++++++|.++|.+ +..++|+|+||||+||||||+++|++. .+..+|+. ++|+++++.++...++..|++.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3458999999999999976 568999999999999999999999875 55778985 99999999999888888877753
Q ss_pred CCCCc----cc-----ccccHHHHHHHHHHHh---ccceEEEEEcccccccccccccccCCCCCCCccchHH--------
Q 048813 155 GLLND----TW-----KNRRIEQKALDIFRIL---KEQKFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD-------- 214 (552)
Q Consensus 155 ~~~~~----~~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T-------- 214 (552)
+.... .. ...+.++....+++.| .+||+||||||||+.++|+.+. +||+||+|
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 21110 00 1123445556667665 6799999999999988887652 57888877
Q ss_pred --------------------------------------HHhhHhCCCchHHHHHHHHhccC-CCHHHHHHHHHHHhccCC
Q 048813 215 --------------------------------------GTAKECGGLPLALITIGRAMACK-KTPEEWTYAIEVLRTSSS 255 (552)
Q Consensus 215 --------------------------------------~i~~~c~glPLai~~i~~~l~~~-~~~~~w~~~~~~l~~~~~ 255 (552)
...+.|+|+||||.++|+.|+.+ .+.++|...
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------- 350 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--------- 350 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC---------
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC---------
Confidence 11245999999999999999875 377788752
Q ss_pred CCCCCCcccchhhhhhccCCCCcch-hHHHhhhcCCCCCcccChHHHHHHHHHcCCcccccchhhhhhHHHHHHHHHHhc
Q 048813 256 QFPGLGNEVYPLLKFSYDSLPGDTI-RSCLLYCCLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYYILGILLHAC 334 (552)
Q Consensus 256 ~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~~~~~~~~~~~~~~l~~L~~~s 334 (552)
....+..++++||+.||+ +. |.||++||+||+++.|+++.++.+|+++| +..+..++++|.++|
T Consensus 351 ----~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRS 415 (1221)
T 1vt4_I 351 ----NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYS 415 (1221)
T ss_dssp ----SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSS
T ss_pred ----ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhC
Confidence 125799999999999999 78 99999999999999999999999999887 124677899999999
Q ss_pred cceec-CCCcEEEchhHHHHH
Q 048813 335 LLEEG-GDGEVKMHDVVRDMA 354 (552)
Q Consensus 335 ll~~~-~~~~~~mHdlv~~~~ 354 (552)
|++.. ....|+|||++++++
T Consensus 416 LLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 416 LVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSBCSSSSEEBCCCHHHHHH
T ss_pred CEEEeCCCCEEEehHHHHHHh
Confidence 99986 457899999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=283.16 Aligned_cols=261 Identities=19% Similarity=0.238 Sum_probs=201.9
Q ss_pred CCCcccchHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhhhcc-cCCC-CeEEEEEECCccCHHHHHH--
Q 048813 75 TEPTVIGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLES-TTNF-NYVIWVVVSKDLRLENIQE-- 148 (552)
Q Consensus 75 ~~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~-- 148 (552)
..+.||||+.++++|.+.|.. +..++|+|+||||+||||||++++++. .. ..+| +.++|++++... ...+..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~-~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQD-KSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCC-HHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCc-hHHHHHHH
Confidence 345699999999999999973 567899999999999999999999875 33 5678 589999998752 333333
Q ss_pred -HHHHHcCCCC--cccccccHHHHHHHHHHHhcc--ceEEEEEcccccccccccccccCCCCCCCccchHH---------
Q 048813 149 -TIGEKIGLLN--DTWKNRRIEQKALDIFRILKE--QKFVLLLDDLWQRVDLVKVGVPLPGPQSSRSLWFD--------- 214 (552)
Q Consensus 149 -~i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~~~~~~~~s~il~T--------- 214 (552)
.++..++... ......+.+.....+...+.+ +++||||||||+...+..+ .++++||+|
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHh
Confidence 3344554211 112344566777778888876 7899999999987665543 345666666
Q ss_pred ---------------------------------------HHhhHhCCCchHHHHHHHHhccCCCHHHHHHHHHHHhccCC
Q 048813 215 ---------------------------------------GTAKECGGLPLALITIGRAMACKKTPEEWTYAIEVLRTSSS 255 (552)
Q Consensus 215 ---------------------------------------~i~~~c~glPLai~~i~~~l~~~~~~~~w~~~~~~l~~~~~ 255 (552)
+|+++|+|+||||..+|+.++.. ...|..+++.+.....
T Consensus 273 ~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQF 350 (591)
T ss_dssp CCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCC
T ss_pred cCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHH
Confidence 78999999999999999999864 3479998888876532
Q ss_pred C-----CCCCCcccchhhhhhccCCCCcchhHHHhhhcCCCCCcccChHHHHHHHHHcCCcccccchhhhhhHHHHHHHH
Q 048813 256 Q-----FPGLGNEVYPLLKFSYDSLPGDTIRSCLLYCCLYPEDYCISKENLIDCWIGEGFLTERDRFGEQNQGYYILGIL 330 (552)
Q Consensus 256 ~-----~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~W~a~g~~~~~~~~~~~~~~~~~l~~L 330 (552)
. .......+..++..||+.||+ +.+.||+++|+||+++.|+.+.+...|.++ ...+..+++.|
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L 418 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEF 418 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHH
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHH
Confidence 2 111224788999999999999 899999999999999999999999999543 23456789999
Q ss_pred HHhccceecC---CCcEEEchhHHHHHHHHH
Q 048813 331 LHACLLEEGG---DGEVKMHDVVRDMALWIA 358 (552)
Q Consensus 331 ~~~sll~~~~---~~~~~mHdlv~~~~~~~~ 358 (552)
.++||++... ...|.||+++|++++...
T Consensus 419 ~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 419 VNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999998642 347999999999998773
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=2.8e-15 Score=144.12 Aligned_cols=166 Identities=26% Similarity=0.432 Sum_probs=131.6
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP 448 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp 448 (552)
+..........+.+..+++++.|++++|.+..++.+..+++|+.|++.+|.+..+++..+..+++|++|++++|.++.+|
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 125 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC
Confidence 33444445556667778899999999999988888888999999999999998888887888999999999999998876
Q ss_pred cc-ccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccc
Q 048813 449 VG-ISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSI 526 (552)
Q Consensus 449 ~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 526 (552)
.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|+..++.+++|++|++.++ .+.++++
T Consensus 126 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~--- 198 (272)
T 3rfs_A 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN---QLKSVPD--- 198 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---CCSCCCT---
T ss_pred HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC---cCCccCH---
Confidence 54 78899999999999999888765 5789999999999985 77888776788999999999554 4433222
Q ss_pred ccCCCcchhHhhcCCCCCceEEEE
Q 048813 527 LFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 527 ~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
..+..+++|+.|+++
T Consensus 199 ---------~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 199 ---------GVFDRLTSLQYIWLH 213 (272)
T ss_dssp ---------TTTTTCTTCCEEECC
T ss_pred ---------HHHhCCcCCCEEEcc
Confidence 224566777777653
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=5.3e-15 Score=146.14 Aligned_cols=131 Identities=21% Similarity=0.314 Sum_probs=78.6
Q ss_pred cCCcccceEEEeecCCcccCC-CCCCCCccceeecccCC-CcccCchh--------hcCCCCceEEEcCCCCCCcCCccc
Q 048813 382 VRGWEKARRLSLMHNQITNLS-EIPTCPHLLTCFLNRNG-LQMIPNDF--------FQFMPSLKVLNLSYSKLTNLPVGI 451 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~-~~~~~~~L~~L~l~~~~-l~~~~~~~--------~~~l~~L~~L~l~~~~l~~lp~~~ 451 (552)
+..+++++.|++++|.+..+| .+..+++|+.|++.+|. ...+|..+ +..+++|++|++++|.++.+|..+
T Consensus 123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l 202 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202 (328)
T ss_dssp GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhh
Confidence 445566666666666666554 34555666666666542 33344332 123666666666666666666666
Q ss_pred cCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 452 SKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 452 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+.+++|++|++++|.+..+|..++.+++|++|++++|.....+|.. ++.+++|++|++.+|
T Consensus 203 ~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDC 263 (328)
T ss_dssp GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTC
T ss_pred cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCC
Confidence 6666666666666666666666666666666666666555556654 666666666666544
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=3.3e-14 Score=134.84 Aligned_cols=165 Identities=24% Similarity=0.321 Sum_probs=114.4
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
+...+.....+|..- ...++.|++++|.+..++ .+..+++|+.|++++|.+..+++..+..+++|++|++++|.++.
T Consensus 19 l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 19 VDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp EECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred EecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc
Confidence 333444444444321 257788888888877764 36777888888888888887777767788888888888888887
Q ss_pred CC-ccccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccc
Q 048813 447 LP-VGISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASED 524 (552)
Q Consensus 447 lp-~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 524 (552)
+| ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|+..++.+++|++|++.+ |.+.++++
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~~- 172 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLST---NQLQSVPH- 172 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS---SCCSCCCT-
T ss_pred cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCC---CcCCccCH-
Confidence 75 4567788888888888888887765 4678888888888874 7777775577888888888844 44433222
Q ss_pred ccccCCCcchhHhhcCCCCCceEEEE
Q 048813 525 SILFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 525 ~~~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
..+..+++|+.|+++
T Consensus 173 -----------~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 173 -----------GAFDRLGKLQTITLF 187 (251)
T ss_dssp -----------TTTTTCTTCCEEECC
T ss_pred -----------HHHhCCCCCCEEEee
Confidence 234556666666653
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=3.4e-14 Score=136.38 Aligned_cols=153 Identities=24% Similarity=0.368 Sum_probs=97.6
Q ss_pred cCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCc
Q 048813 382 VRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQ 458 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~ 458 (552)
+..+++++.|++++|.+..++. +..+++|+.|++.+|.+..++...+..+++|++|++++|.++.+|. .+..+++|+
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 4556677777777776666543 3556677777777777766666666667777777777777766543 456677777
Q ss_pred EEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHh
Q 048813 459 HLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEE 537 (552)
Q Consensus 459 ~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (552)
+|++++|.+..+|.. +..+++|++|++++|. +..+|+..+..+++|++|++.++ .+.++++ ..
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N---~l~~~~~------------~~ 200 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN---QLKRVPE------------GA 200 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS---CCSCCCT------------TT
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC---cCCcCCH------------HH
Confidence 777777777766654 5667777777777664 56666554666777777777443 3332221 12
Q ss_pred hcCCCCCceEEEE
Q 048813 538 LLGLKYLEVISFT 550 (552)
Q Consensus 538 l~~L~~L~~L~l~ 550 (552)
+..+++|+.|+++
T Consensus 201 ~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 201 FDSLEKLKMLQLQ 213 (270)
T ss_dssp TTTCTTCCEEECC
T ss_pred hccccCCCEEEec
Confidence 4556777777653
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=2.6e-14 Score=130.19 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=122.7
Q ss_pred CCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc-CCccccCcCcCcEEe
Q 048813 383 RGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN-LPVGISKVVSLQHLD 461 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~ 461 (552)
..+++++.|++++|.+..++.+..+++|+.|++.+|.+..++ .+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345688999999999998888888999999999999776665 37789999999999999986 688899999999999
Q ss_pred ccCCCCcc-cchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcC
Q 048813 462 LSESDIEE-LPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLG 540 (552)
Q Consensus 462 l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 540 (552)
+++|.+.. .|..+..+++|++|++++|..+..+|. +..+++|++|++.+|. +.+ +..+..
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~---i~~--------------~~~l~~ 179 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG---VHD--------------YRGIED 179 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBC---CCC--------------CTTGGG
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCC---CcC--------------hHHhcc
Confidence 99998885 678899999999999999965788884 8999999999996654 331 124677
Q ss_pred CCCCceEEEE
Q 048813 541 LKYLEVISFT 550 (552)
Q Consensus 541 L~~L~~L~l~ 550 (552)
+++|+.|+++
T Consensus 180 l~~L~~L~l~ 189 (197)
T 4ezg_A 180 FPKLNQLYAF 189 (197)
T ss_dssp CSSCCEEEEC
T ss_pred CCCCCEEEee
Confidence 8889988875
No 10
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=9.4e-14 Score=135.90 Aligned_cols=166 Identities=23% Similarity=0.292 Sum_probs=98.0
Q ss_pred cceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCc
Q 048813 375 GLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKV 454 (552)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l 454 (552)
....++.+..+++++.|++++|.+..++.+..+++|+.|++.+|.+..++. +..+++|++|++++|.++.+|. +..+
T Consensus 52 ~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l 128 (308)
T 1h6u_A 52 GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGL 128 (308)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTC
T ss_pred CccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hcCC
Confidence 334444555566667777776666666556666666666666666665542 5566666666666666666653 6666
Q ss_pred CcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccc--------
Q 048813 455 VSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSI-------- 526 (552)
Q Consensus 455 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~-------- 526 (552)
++|++|++++|.+..+|. +..+++|++|++++|. +..+|. +..+++|++|++.++ .+.++++...
T Consensus 129 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n---~l~~~~~l~~l~~L~~L~ 201 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDN---KISDISPLASLPNLIEVH 201 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS---CCCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCC---ccCcChhhcCCCCCCEEE
Confidence 666666666666666654 6666666666666663 555554 566666666666433 2333322111
Q ss_pred ccCCCcchhHhhcCCCCCceEEEE
Q 048813 527 LFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 527 ~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
+..+.-..+..+..+++|+.|+++
T Consensus 202 L~~N~l~~~~~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 202 LKNNQISDVSPLANTSNLFIVTLT 225 (308)
T ss_dssp CTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred ccCCccCccccccCCCCCCEEEcc
Confidence 111111122247788889988876
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=7e-14 Score=134.17 Aligned_cols=165 Identities=24% Similarity=0.434 Sum_probs=132.6
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
+...+.....+|.. -..+++.|++++|.+..++ .+..+++|+.|++.+|.+..++...|..+++|++|++++|.++.
T Consensus 21 l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 21 VDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred EEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc
Confidence 33444444444432 2257999999999998876 47889999999999999999999888999999999999999999
Q ss_pred CCc-cccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccc
Q 048813 447 LPV-GISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASED 524 (552)
Q Consensus 447 lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 524 (552)
+|. .+..+.+|++|++++|.+..+|.. +..+++|++|++++|. +..+|...++.+++|++|++.++ .+.++++
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~- 174 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN---QLKRVPE- 174 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---CCSCCCT-
T ss_pred CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC---cCcEeCh-
Confidence 865 568899999999999999988754 7899999999999995 88898877899999999999654 3432221
Q ss_pred ccccCCCcchhHhhcCCCCCceEEEE
Q 048813 525 SILFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 525 ~~~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
..+..+++|+.|+++
T Consensus 175 -----------~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 175 -----------GAFDKLTELKTLKLD 189 (270)
T ss_dssp -----------TTTTTCTTCCEEECC
T ss_pred -----------hHhccCCCcCEEECC
Confidence 235667888888764
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=5.6e-14 Score=131.20 Aligned_cols=140 Identities=29% Similarity=0.401 Sum_probs=120.8
Q ss_pred cCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc
Q 048813 372 AGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV 449 (552)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 449 (552)
.+.....+|.. -.++++.|++++|.+..++ .+..+++|+.|++.+|.+..++...|..+++|++|+|++|.++.+|.
T Consensus 27 ~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 27 RSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp TTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence 33344444432 2378999999999999874 37789999999999999999998888999999999999999999865
Q ss_pred c-ccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 450 G-ISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 450 ~-~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
. +..+.+|++|++++|.++.+|..+..+++|++|++++|. +..+|+..+..+++|++|++.++
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 4 689999999999999999999999999999999999995 88998777899999999999653
No 13
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=1.1e-13 Score=134.15 Aligned_cols=158 Identities=21% Similarity=0.358 Sum_probs=125.7
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP 448 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp 448 (552)
+...+.....++.+..+++++.|++++|.+..++.+..+++|+.|++.+|.+..++. +..+++|++|++++|.++.++
T Consensus 51 L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~~ 128 (291)
T 1h6t_A 51 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN 128 (291)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCG
T ss_pred EEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCCh
Confidence 334444455556677788899999999998888778888999999999998877664 678899999999999888875
Q ss_pred ccccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccccc
Q 048813 449 VGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILF 528 (552)
Q Consensus 449 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 528 (552)
.+..+++|++|++++|.++.+ +.+..+++|++|++++|. +..+|+ +..+++|++|++.++ .+.+
T Consensus 129 -~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N---~i~~-------- 192 (291)
T 1h6t_A 129 -GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN---HISD-------- 192 (291)
T ss_dssp -GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS---CCCB--------
T ss_pred -hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCC---cCCC--------
Confidence 688889999999999988888 478889999999999885 777776 888999999998554 3432
Q ss_pred CCCcchhHhhcCCCCCceEEEE
Q 048813 529 GGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 529 ~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
+..+..+++|+.|+++
T Consensus 193 ------l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 193 ------LRALAGLKNLDVLELF 208 (291)
T ss_dssp ------CGGGTTCTTCSEEEEE
T ss_pred ------ChhhccCCCCCEEECc
Confidence 2346778888888875
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.54 E-value=5.9e-14 Score=138.63 Aligned_cols=152 Identities=24% Similarity=0.312 Sum_probs=126.2
Q ss_pred CcCCcccceEEEeecCCc-ccCCC-C---------CCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc
Q 048813 381 DVRGWEKARRLSLMHNQI-TNLSE-I---------PTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV 449 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l-~~l~~-~---------~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 449 (552)
.+..+++++.|++++|.. ..+|. + ..+++|+.|++.+|.+..+|.. +..+++|++|++++|.++.+|.
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCG
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCch
Confidence 456778999999998654 33443 2 2388999999999999888876 7789999999999999999999
Q ss_pred cccCcCcCcEEeccCCC-CcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccccc
Q 048813 450 GISKVVSLQHLDLSESD-IEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILF 528 (552)
Q Consensus 450 ~~~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 528 (552)
.++.+++|++|++++|. ...+|..++.+++|++|++++|..+..+|.. ++.+++|++|++.+|..
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~------------- 289 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVN------------- 289 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTT-------------
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCc-------------
Confidence 99999999999999985 4578888999999999999999888899987 89999999999976643
Q ss_pred CCCcchhHhhcCCCCCceEEE
Q 048813 529 GGGELIVEELLGLKYLEVISF 549 (552)
Q Consensus 529 ~~~~~~~~~l~~L~~L~~L~l 549 (552)
.+..+..+.+|++|+.+.+
T Consensus 290 --~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 290 --LSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp --CCCCCGGGGGSCTTCEEEC
T ss_pred --hhhccHHHhhccCceEEeC
Confidence 3345566788888887765
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=1.6e-13 Score=130.02 Aligned_cols=132 Identities=29% Similarity=0.482 Sum_probs=118.7
Q ss_pred CcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L 457 (552)
.+..+++++.|++++|.+..++. +..+++|+.|++.+|.+..++...+..+++|++|++++|.++.+|.. +..+.+|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 46678899999999999988754 68899999999999999999988889999999999999999998765 6889999
Q ss_pred cEEeccCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 458 QHLDLSESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 458 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|++++|.++.+|. .+..+++|++|++++|. +..+|+..+..+++|++|++.++
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 999999999999987 58899999999999995 78888766899999999999653
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=1.4e-13 Score=133.11 Aligned_cols=128 Identities=24% Similarity=0.314 Sum_probs=64.9
Q ss_pred cCCcccceEEEeecCCcccCC--CCCCCCccceeecccCC-CcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcC
Q 048813 382 VRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNG-LQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSL 457 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L 457 (552)
+..+++++.|++++|.+..+. .+..+++|+.|++.+|. +..+++..+..+++|++|++++|.++.+ |..+..+++|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 344455555555555554431 24445555555555553 4444444445555555555555555544 3344555555
Q ss_pred cEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 458 QHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 458 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
++|++++|.+..+|.. +..+++|++|++++|. +..+|...+..+++|++|++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEEC
Confidence 5555555555554432 4455555555555553 44444433455555555555
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=1.1e-13 Score=134.19 Aligned_cols=128 Identities=30% Similarity=0.411 Sum_probs=80.7
Q ss_pred cCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEE
Q 048813 382 VRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHL 460 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L 460 (552)
+..+++++.|++++|.+..++....+++|+.|++++|.+..+|.. +..+++|++|++++|.++.+| ..+..+.+|++|
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 445566666666666666655555666666666666666666553 455666666666666666654 346666666666
Q ss_pred eccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 461 DLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 461 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
++++|.++.+|.. +..+++|++|++++|. +..+|++.+..+++|++|++.
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECC
Confidence 6666666666544 3566666666666664 566666545666666666663
No 18
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=9e-14 Score=132.69 Aligned_cols=123 Identities=22% Similarity=0.297 Sum_probs=84.0
Q ss_pred cCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEe
Q 048813 382 VRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLD 461 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 461 (552)
+..+++++.|++++|.+..++.+..+++|+.|++++|.+..+++ +..+++|++|++++|.++.+|.... .+|++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 34455677777777777776666667777777777777766665 5667777777777777777664332 6777777
Q ss_pred ccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 462 LSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 462 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
+++|.++.+| .+..+++|++|++++|. +..+|. ++.+++|++|++.+
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHG 159 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTT
T ss_pred ccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCC
Confidence 7777777665 46677777777777774 666653 66777777777743
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=6e-14 Score=140.23 Aligned_cols=140 Identities=28% Similarity=0.374 Sum_probs=109.8
Q ss_pred CCcceeCCCcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc
Q 048813 373 GVGLVEAPDVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG 450 (552)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 450 (552)
+.....+|. .-.++++.|++++|.+..++. +..+++|+.|++.+|.+..+++..+..+++|++|++++|.++.+|..
T Consensus 40 ~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 40 SGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp STTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred CCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 333444443 223578889999888887754 77888899999998888887776678888899999999988888765
Q ss_pred -ccCcCcCcEEeccCCCCcccch--hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 451 -ISKVVSLQHLDLSESDIEELPG--ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 451 -~~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++.+++|++|++++|.+..+|. .+.++++|++|++++|..+..+|+..++.+++|++|++.++
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 7888899999999888888886 67888899999998886577776555888888888888554
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=1.3e-13 Score=133.70 Aligned_cols=132 Identities=28% Similarity=0.375 Sum_probs=114.3
Q ss_pred ccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEecc
Q 048813 386 EKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLS 463 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 463 (552)
+.++.|++++|.+..++ .+..+++|+.|++.+|.+..++.. ..+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 68999999999988763 478889999999999999887764 68999999999999999999999999999999999
Q ss_pred CCCCcccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccc
Q 048813 464 ESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASE 523 (552)
Q Consensus 464 ~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 523 (552)
+|.++.+| ..+..+++|++|++++|. +..+|++++..+++|+.|++.+ |.+..+++
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~---N~l~~l~~ 165 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLAN---NNLTELPA 165 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTT---SCCSCCCT
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCC---CcCCccCH
Confidence 99999987 458899999999999995 8889888788999999999954 45554443
No 21
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=2e-13 Score=126.54 Aligned_cols=143 Identities=28% Similarity=0.318 Sum_probs=119.7
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
+...+.....+|..- ..+++.|++++|.+..++ .+..+++|+.|++++|.+..+++..|..+++|++|+|++|.++.
T Consensus 16 v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp EECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred EEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 334444444454322 268999999999998876 47889999999999999998877778999999999999999999
Q ss_pred CCcc-ccCcCcCcEEeccCCCCcccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 447 LPVG-ISKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 447 lp~~-~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+|.. +..+.+|++|++++|.+..++ ..+..+++|++|++++|. +..+|++.+..+++|++|++.++
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 9765 688999999999999999874 568899999999999995 88888777899999999999653
No 22
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=2.7e-13 Score=124.56 Aligned_cols=128 Identities=29% Similarity=0.462 Sum_probs=114.3
Q ss_pred cccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcCcEEe
Q 048813 385 WEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQHLD 461 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~ 461 (552)
.++++.|++++|.+..++. +..+++|+.|++.+|.+..++...+..+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4589999999999988764 67899999999999999999988888999999999999999998754 68999999999
Q ss_pred ccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 462 LSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 462 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+++|.+..+|.. +..+++|++|++++|. +..+|+..+..+++|++|++.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 999999998865 6889999999999995 78888876889999999999654
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.7e-13 Score=127.02 Aligned_cols=145 Identities=19% Similarity=0.328 Sum_probs=120.0
Q ss_pred eEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEeccCCCC
Q 048813 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSESDI 467 (552)
Q Consensus 389 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l 467 (552)
+.++.+++.+..+|... .++++.|++.+|.+..++...|..+++|++|+|++|.++.+ |..+..+.+|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 56888888888877522 26899999999999999987789999999999999999987 78999999999999999999
Q ss_pred cccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCCce
Q 048813 468 EELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYLEV 546 (552)
Q Consensus 468 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 546 (552)
+.+|.. +..+++|++|++++|. +..+++..+..+++|++|++.+ |.+.++++ ..+..+++|+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~~------------~~~~~l~~L~~ 156 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYD---NKLQTIAK------------GTFSPLRAIQT 156 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS---SCCSCCCT------------TTTTTCTTCCE
T ss_pred CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCC---CcCCEECH------------HHHhCCCCCCE
Confidence 999976 5789999999999996 7888766699999999999954 44543332 22456777777
Q ss_pred EEEE
Q 048813 547 ISFT 550 (552)
Q Consensus 547 L~l~ 550 (552)
|+++
T Consensus 157 L~L~ 160 (220)
T 2v9t_B 157 MHLA 160 (220)
T ss_dssp EECC
T ss_pred EEeC
Confidence 7664
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=3.3e-13 Score=130.55 Aligned_cols=154 Identities=25% Similarity=0.364 Sum_probs=114.5
Q ss_pred CcCCcccceEEEeecCC-cccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCc
Q 048813 381 DVRGWEKARRLSLMHNQ-ITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVS 456 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~-l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~ 456 (552)
.+..+++++.|++++|. +..++ .+..+++|+.|++.+|.+..+++..+..+++|++|++++|.++.+|. .++.+++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 45667788888888886 66652 46778888888888888888777667888888888888888888764 4778888
Q ss_pred CcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchh
Q 048813 457 LQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIV 535 (552)
Q Consensus 457 L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (552)
|++|++++|.++.+|.. +..+++|++|++++|. +..+++..++.+++|++|++.++ .+.+ ...
T Consensus 155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n---~l~~------------~~~ 218 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN---NLSA------------LPT 218 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS---CCSC------------CCH
T ss_pred ccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC---cCCc------------CCH
Confidence 88888888888888764 7788888888888885 55553334788888888888554 3432 122
Q ss_pred HhhcCCCCCceEEEE
Q 048813 536 EELLGLKYLEVISFT 550 (552)
Q Consensus 536 ~~l~~L~~L~~L~l~ 550 (552)
..+..+++|+.|+++
T Consensus 219 ~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 219 EALAPLRALQYLRLN 233 (285)
T ss_dssp HHHTTCTTCCEEECC
T ss_pred HHcccCcccCEEecc
Confidence 345667777777654
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=2.3e-13 Score=123.84 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=121.3
Q ss_pred eEEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc-
Q 048813 368 FLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN- 446 (552)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~- 446 (552)
.+...+.....++.+..+++++.|++++|.+..++.+..+++|+.|++.+|.+.......+..+++|++|++++|.++.
T Consensus 48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127 (197)
T ss_dssp EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG
T ss_pred EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH
Confidence 3444445555666777889999999999998888888999999999999999886434447889999999999999986
Q ss_pred CCccccCcCcCcEEeccCCC-CcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 447 LPVGISKVVSLQHLDLSESD-IEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 447 lp~~~~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
.|..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+++|++|++.+
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFS 190 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECB
T ss_pred hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeC
Confidence 67889999999999999997 88998 79999999999999995 788874 89999999999954
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=3.7e-13 Score=131.68 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=128.4
Q ss_pred CCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEec
Q 048813 383 RGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDL 462 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 462 (552)
..+++++.|+++++.+..++.+..+++|+.|++++|.+..++. +..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 3467899999999999999888999999999999999988887 788999999999999999987 7899999999999
Q ss_pred cCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccc--------ccCCCcch
Q 048813 463 SESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSI--------LFGGGELI 534 (552)
Q Consensus 463 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~~~~~~~~ 534 (552)
++|.++.+|. +..+++|++|++++|. +..+|+ ++.+++|++|++.+|. +.++++... +..+.-..
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~---l~~~~~l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQ---VSDLTPLANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSC---CCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCc---CCCChhhcCCCCCCEEECCCCccCc
Confidence 9999999885 9999999999999995 788887 8999999999996654 444333111 11112222
Q ss_pred hHhhcCCCCCceEEEE
Q 048813 535 VEELLGLKYLEVISFT 550 (552)
Q Consensus 535 ~~~l~~L~~L~~L~l~ 550 (552)
+..+..+++|+.|+++
T Consensus 188 ~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 188 ISPLASLPNLIEVHLK 203 (308)
T ss_dssp CGGGGGCTTCCEEECT
T ss_pred ChhhcCCCCCCEEEcc
Confidence 3336677777777653
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.48 E-value=3.8e-13 Score=129.10 Aligned_cols=144 Identities=28% Similarity=0.436 Sum_probs=124.2
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
+...+......+.+..+++++.|++++|.+..++. +..+++|+.|++.+|.+..+++..+..+++|++|++++|.++.
T Consensus 68 L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 68 LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence 34444445555667788999999999999998765 6889999999999999999998888999999999999999999
Q ss_pred CCcc-ccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 447 LPVG-ISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 447 lp~~-~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|+..++.+++|++|++.++
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 8654 68999999999999999988765 5889999999999995 77888776899999999999664
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.48 E-value=5.2e-13 Score=138.09 Aligned_cols=128 Identities=27% Similarity=0.318 Sum_probs=85.9
Q ss_pred ccceEEEeecCCcccC--CCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCcEEec
Q 048813 386 EKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDL 462 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 462 (552)
++++.|++++|.+..+ ..+..+++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4677777777777665 235667777777777777776666666677777777777777777654 3666777777777
Q ss_pred cCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 463 SESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 463 ~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|.+..+|. .+.++++|++|++++|..+..+|...+..+++|++|++.++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 7777776664 45666667777776655566666555666666666666443
No 29
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=4.6e-13 Score=124.14 Aligned_cols=143 Identities=19% Similarity=0.231 Sum_probs=117.3
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCCC---CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSE---IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT 445 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~ 445 (552)
+...+.....+|. .-...++.|++++|.+..++. +..+++|+.|++.+|.+..+++..|..+++|++|+|++|.++
T Consensus 16 l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 16 VDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred eEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence 3333444444443 123467899999999988732 678899999999999999998877899999999999999999
Q ss_pred cCCc-cccCcCcCcEEeccCCCCccc-chhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 446 NLPV-GISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 446 ~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
.+|. .+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++.++
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence 9865 589999999999999999987 5678999999999999995 77775555999999999999553
No 30
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=2.4e-13 Score=144.71 Aligned_cols=132 Identities=20% Similarity=0.339 Sum_probs=92.4
Q ss_pred cceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCc
Q 048813 375 GLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKV 454 (552)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l 454 (552)
.+..++.+..+++++.|++++|.+..++.+..+++|+.|++++|.+..++. +..+++|+.|+|++|.+..+| .+..+
T Consensus 54 ~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l 130 (605)
T 1m9s_A 54 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHL 130 (605)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTSCCCCCG-GGGGC
T ss_pred CCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCCCCCCCc-cccCC
Confidence 344455566667777777777777776667777777777777777766552 566777777777777777764 46777
Q ss_pred CcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 455 VSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 455 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|+.|+|++|.+..+ +.+..|++|+.|+|++|. +..+++ +..+++|+.|++.+|
T Consensus 131 ~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSS
T ss_pred CccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCC
Confidence 7777777777777776 467777777777777774 566655 677777777777443
No 31
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=2.9e-13 Score=125.44 Aligned_cols=146 Identities=18% Similarity=0.311 Sum_probs=118.3
Q ss_pred ceEEEeecCCcccCCCCCCCCccceeecccCCCcccC-chhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCcEEeccCC
Q 048813 388 ARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIP-NDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDLSES 465 (552)
Q Consensus 388 l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~ 465 (552)
-+.++++++.+..+|.. -...++.|++++|.+..++ ...|..+++|++|++++|.++.+|. .+..+.+|++|++++|
T Consensus 13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35789999999888752 2356789999999998874 4568899999999999999999865 7999999999999999
Q ss_pred CCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCC
Q 048813 466 DIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYL 544 (552)
Q Consensus 466 ~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 544 (552)
.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++. .|.+.+++ ...+..+++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~---~N~l~~~~------------~~~~~~l~~L 155 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLY---DNQITTVA------------PGAFDTLHSL 155 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECT---TSCCCCBC------------TTTTTTCTTC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECC---CCcCCEEC------------HHHhcCCCCC
Confidence 99988765 8899999999999996 777765558999999999995 45554332 2345667788
Q ss_pred ceEEEE
Q 048813 545 EVISFT 550 (552)
Q Consensus 545 ~~L~l~ 550 (552)
+.|+++
T Consensus 156 ~~L~L~ 161 (220)
T 2v70_A 156 STLNLL 161 (220)
T ss_dssp CEEECC
T ss_pred CEEEec
Confidence 877764
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.8e-13 Score=121.21 Aligned_cols=130 Identities=24% Similarity=0.297 Sum_probs=112.9
Q ss_pred ccceEEEeecCCcc--cCCCC-CCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc-CCccccCcCcCcEEe
Q 048813 386 EKARRLSLMHNQIT--NLSEI-PTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN-LPVGISKVVSLQHLD 461 (552)
Q Consensus 386 ~~l~~L~l~~~~l~--~l~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~ 461 (552)
++++.|++++|.+. .++.. ..+++|+.|++.+|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 58999999999988 67654 7889999999999998877 347889999999999999998 787777899999999
Q ss_pred ccCCCCcccc--hhhhcCCCCCEEecCCCcCccccch---hhhcCCCCcceeeecCcCCCCC
Q 048813 462 LSESDIEELP--GELKALVNLKCLDLEYTRNLITIPR---QLISNLSRLHVLRMFGASHNAF 518 (552)
Q Consensus 462 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~---~~i~~l~~L~~L~l~~~~~~~~ 518 (552)
+++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++.+|....+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999999987 789999999999999995 778886 4589999999999977665433
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=3.9e-13 Score=129.38 Aligned_cols=125 Identities=23% Similarity=0.311 Sum_probs=84.6
Q ss_pred CcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L 457 (552)
.+..+++++.|++++|.+..++. +..+++|+.|++.+|.+..++...+..+++|++|++++|.+..++. .++.+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 34556677777777777666543 5667777777777777776666556677777777777777776644 56777777
Q ss_pred cEEeccCCCCcc--cchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcc
Q 048813 458 QHLDLSESDIEE--LPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLH 506 (552)
Q Consensus 458 ~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~ 506 (552)
++|++++|.+.. +|..+..+++|++|++++|. +..+|...+..+++|+
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCT
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhcc
Confidence 777777777765 56777777777777777774 5555543355555555
No 34
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.3e-13 Score=131.98 Aligned_cols=145 Identities=22% Similarity=0.323 Sum_probs=124.5
Q ss_pred cCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEe
Q 048813 382 VRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLD 461 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 461 (552)
...+++++.|++++|.+..++.+..+++|+.|++++|.+..+++ +..+++|++|++++|.++.+| .++.+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEE
Confidence 34567899999999999999889999999999999999988877 788999999999999999987 489999999999
Q ss_pred ccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCC
Q 048813 462 LSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGL 541 (552)
Q Consensus 462 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 541 (552)
+++|.+..+| .+..+++|++|++++|. +..++. ++.+++|++|++.+|. +.++ ..+..+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~---l~~~--------------~~l~~l 177 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQ---ISDI--------------VPLAGL 177 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSC---CCCC--------------GGGTTC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCc---cccc--------------hhhcCC
Confidence 9999999985 68899999999999995 777754 8999999999996553 4321 116778
Q ss_pred CCCceEEEE
Q 048813 542 KYLEVISFT 550 (552)
Q Consensus 542 ~~L~~L~l~ 550 (552)
++|+.|+++
T Consensus 178 ~~L~~L~L~ 186 (291)
T 1h6t_A 178 TKLQNLYLS 186 (291)
T ss_dssp TTCCEEECC
T ss_pred CccCEEECC
Confidence 888888764
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.46 E-value=7.5e-13 Score=136.41 Aligned_cols=128 Identities=27% Similarity=0.349 Sum_probs=88.7
Q ss_pred ccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCcEEec
Q 048813 386 EKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDL 462 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 462 (552)
.+++.|++++|.+..++ .+..+++|+.|++++|.+..++...|..+++|++|+|++|.++.+|. .+..+.+|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 46777777777776653 46677777777777777777766667777777777777777777654 4677777777777
Q ss_pred cCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 463 SESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 463 ~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|.+..+|. .+..+++|++|++++|..+..+|...+..+++|++|++.++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 7777776664 46666777777777665666666655666666666666443
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=7.3e-13 Score=127.44 Aligned_cols=126 Identities=25% Similarity=0.330 Sum_probs=112.1
Q ss_pred ccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEEec
Q 048813 386 EKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLDL 462 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l 462 (552)
++++.|++++|.+..++ .+..+++|+.|++.+|.+..++...+..+++|++|++++|.++.++ ..+..+.+|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47999999999998875 5788999999999999999988877899999999999999999875 67999999999999
Q ss_pred cCCCCcccch-hhhcCCCCCEEecCCCcCccc--cchhhhcCCCCcceeeecCc
Q 048813 463 SESDIEELPG-ELKALVNLKCLDLEYTRNLIT--IPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 463 ~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|.+..++. .+..+++|++|++++|. +.. +|.. ++.+++|++|++.++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCC
Confidence 9999998876 68999999999999996 655 5765 899999999999554
No 37
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=7.1e-13 Score=123.69 Aligned_cols=145 Identities=22% Similarity=0.292 Sum_probs=119.0
Q ss_pred cceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCcEEeccCC
Q 048813 387 KARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDLSES 465 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~ 465 (552)
....++.+++.+..+|.. -.++|+.|++++|.+..+++..+..+++|++|+|++|.++.+|. .+..+++|++|++++|
T Consensus 20 s~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 345688888888887752 24889999999999999887778999999999999999999875 4689999999999999
Q ss_pred CCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCC
Q 048813 466 DIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYL 544 (552)
Q Consensus 466 ~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 544 (552)
.++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++.+ |.+..+++ ..+..+++|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~---N~l~~~~~------------~~~~~l~~L 161 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQ---NQLKSIPH------------GAFDRLSSL 161 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCS---SCCCCCCT------------TTTTTCTTC
T ss_pred cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCC---CcCCccCH------------HHHhCCCCC
Confidence 99999865 6889999999999995 8899987 89999999999954 45543332 234566777
Q ss_pred ceEEE
Q 048813 545 EVISF 549 (552)
Q Consensus 545 ~~L~l 549 (552)
+.|++
T Consensus 162 ~~L~l 166 (229)
T 3e6j_A 162 THAYL 166 (229)
T ss_dssp CEEEC
T ss_pred CEEEe
Confidence 77665
No 38
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.4e-13 Score=122.89 Aligned_cols=131 Identities=17% Similarity=0.231 Sum_probs=112.7
Q ss_pred CcCCcccceEEEeecCCcccCCCCCCCC-ccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccc-cCcCcCc
Q 048813 381 DVRGWEKARRLSLMHNQITNLSEIPTCP-HLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGI-SKVVSLQ 458 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~ 458 (552)
.+....+++.|++++|.+..++.+..+. +|+.|++++|.+..++ .+..+++|++|++++|.++.+|+.+ +.+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3445668999999999999887776666 9999999999998873 3788999999999999999988665 8899999
Q ss_pred EEeccCCCCcccch--hhhcCCCCCEEecCCCcCccccchh---hhcCCCCcceeeecCcC
Q 048813 459 HLDLSESDIEELPG--ELKALVNLKCLDLEYTRNLITIPRQ---LISNLSRLHVLRMFGAS 514 (552)
Q Consensus 459 ~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~---~i~~l~~L~~L~l~~~~ 514 (552)
+|++++|.+..+|. .+..+++|++|++++|. +..+|.. +++.+++|++|++.++.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999997 88999999999999996 7788864 58899999999996554
No 39
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=2.5e-13 Score=117.57 Aligned_cols=123 Identities=28% Similarity=0.314 Sum_probs=86.8
Q ss_pred ccceEEEeecCCcc--cCCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc-CCccccCcCcCcEEe
Q 048813 386 EKARRLSLMHNQIT--NLSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN-LPVGISKVVSLQHLD 461 (552)
Q Consensus 386 ~~l~~L~l~~~~l~--~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~ 461 (552)
++++.|++++|.+. .++. +..+++|+.|++.+|.+..+ ..+..+++|++|++++|.++. +|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46777888887776 4543 36677777777777777666 336677777777777777776 666666677777777
Q ss_pred ccCCCCcccc--hhhhcCCCCCEEecCCCcCccccch---hhhcCCCCcceeeec
Q 048813 462 LSESDIEELP--GELKALVNLKCLDLEYTRNLITIPR---QLISNLSRLHVLRMF 511 (552)
Q Consensus 462 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~---~~i~~l~~L~~L~l~ 511 (552)
+++|.++.+| ..++.+++|++|++++|. +..+|+ ..++.+++|++|++.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 7777777664 667777777777777774 666665 346777777777663
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.44 E-value=8e-13 Score=136.71 Aligned_cols=127 Identities=26% Similarity=0.378 Sum_probs=61.9
Q ss_pred CCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCC-CCCcCCc-cccCcCcCc
Q 048813 383 RGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYS-KLTNLPV-GISKVVSLQ 458 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~l~~lp~-~~~~l~~L~ 458 (552)
.++++++.|++++|.+..++. +..+++|+.|++++|.+..++...|..+++|++|++++| .+..+|. .+..+.+|+
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 334444555555444444432 344445555555555444444444444444444444442 3333322 344555555
Q ss_pred EEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 459 HLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 459 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
+|++++|.+..+| .+..+++|++|++++|. +..+++..+..+++|+.|++.
T Consensus 200 ~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 200 YLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp EEECTTSCCSSCC-CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECT
T ss_pred EEECCCCcccccc-cccccccccEEECcCCc-CcccCcccccCccCCCEEEeC
Confidence 5555555555554 34555555666665553 444433335556666666553
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.43 E-value=5.2e-13 Score=130.55 Aligned_cols=131 Identities=22% Similarity=0.345 Sum_probs=105.9
Q ss_pred cCCcccceEEEeecCCcccCC---CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc--CCccccCcCc
Q 048813 382 VRGWEKARRLSLMHNQITNLS---EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN--LPVGISKVVS 456 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~ 456 (552)
+..+++++.|++++|.+..++ .+..+++|+.|++.+|.+...++..+..+++|++|++++|.+.. +|..+..+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 456778888999888887764 36778888999999888877776667888889999999988875 6888888889
Q ss_pred CcEEeccCCCCccc-chhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 457 LQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 457 L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+..+++|++|++.++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCC
Confidence 99999999888877 5678888899999998885 67776655788888898888554
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.43 E-value=1.1e-12 Score=141.08 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=122.7
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
+...+.+...+|.. -.++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|.++.
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred eEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 34444455555542 2378999999999998875 47899999999999999998887778999999999999999998
Q ss_pred C-CccccCcCcCcEEeccCCCCcccc-hhhhcCCCCCEEecCCCcCcc--ccchhhhcCCCCcceeeecCcCCCCCcccc
Q 048813 447 L-PVGISKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTRNLI--TIPRQLISNLSRLHVLRMFGASHNAFDEAS 522 (552)
Q Consensus 447 l-p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~ 522 (552)
+ |..++.+++|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++.++ .+.+++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n---~l~~~~ 169 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYN---YIQTIT 169 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSS---CCCEEC
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCC---cceecC
Confidence 7 888999999999999999998887 679999999999999996 54 47876 999999999999554 444443
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.42 E-value=4.8e-13 Score=142.04 Aligned_cols=139 Identities=24% Similarity=0.332 Sum_probs=115.9
Q ss_pred cceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-c
Q 048813 375 GLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-I 451 (552)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~ 451 (552)
....+|.. -.+++++|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|.++.+|+. +
T Consensus 16 ~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 16 SFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred cccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 44444442 2368999999999988763 478899999999999999888877788999999999999999988665 9
Q ss_pred cCcCcCcEEeccCCCCcc--cchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 452 SKVVSLQHLDLSESDIEE--LPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 452 ~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
+.+++|++|++++|.+.. .|..++++++|++|++++|..+..+|...++.+++|++|++.++.
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 999999999999998885 467889999999999999976788886558999999999996543
No 44
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.42 E-value=5.3e-13 Score=125.50 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=66.8
Q ss_pred cCCcccceEEEeecCC-cccCC--CCCCCCccceeeccc-CCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcC
Q 048813 382 VRGWEKARRLSLMHNQ-ITNLS--EIPTCPHLLTCFLNR-NGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSL 457 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~-l~~l~--~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L 457 (552)
+..+++++.|++++|. +..++ .+..+++|+.|++.+ |.+..++...|..+++|++|++++|.++.+|. ++.+.+|
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L 129 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYST 129 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccccc
Confidence 3445555566665554 54443 244555555565555 55555555445555555555555555555554 4555555
Q ss_pred c---EEeccCC-CCcccchh-hhcCCCCC-EEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 458 Q---HLDLSES-DIEELPGE-LKALVNLK-CLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 458 ~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
+ +|++++| .+..+|.. +..+++|+ +|++++|. +..+|...+.. ++|+.|++.
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEECT
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEEcC
Confidence 5 5555555 55555432 45555555 55555553 44555442222 455555553
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=1.2e-12 Score=130.48 Aligned_cols=177 Identities=16% Similarity=0.218 Sum_probs=122.8
Q ss_pred eEEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC
Q 048813 368 FLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL 447 (552)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l 447 (552)
.+...+.....++.+..+++++.|++++|.+..++.+..+++|+.|++.+|.+..++. +..+++|++|++++|.+..+
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~ 125 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDI 125 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCC
T ss_pred EEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCc
Confidence 3444455555566677788888888888888887778888888888888888877653 67888888888888888888
Q ss_pred CccccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccc-
Q 048813 448 PVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSI- 526 (552)
Q Consensus 448 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~- 526 (552)
|. +..+++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|++|++.+|....+..+.....
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 201 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSL 201 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTC
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccccccccCCCcc
Confidence 75 788888888888888444444458888888888888885 667765 7888888888886654333222111100
Q ss_pred ----ccCCCcchhHhhcCCCCCceEEEE
Q 048813 527 ----LFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 527 ----~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
.....-..+..+..+++|+.|+++
T Consensus 202 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 202 HYFTAYVNQITDITPVANMTRLNSLKIG 229 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred ceeecccCCCCCCchhhcCCcCCEEEcc
Confidence 111111122226677778877764
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=134.92 Aligned_cols=151 Identities=25% Similarity=0.360 Sum_probs=74.7
Q ss_pred CCcccceEEEeecCCcccCCC--CCCCCccceeecccC-CCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcE
Q 048813 383 RGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRN-GLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQH 459 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 459 (552)
..+++++.|++++|.+..++. +..+++|+.|++.+| .+..++...|..+++|++|++++|+++.+| .+..+.+|++
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDE 211 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCE
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCE
Confidence 334444455555444444332 344444555555442 333444444455555555555555555555 3455555555
Q ss_pred EeccCCCCccc-chhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhh
Q 048813 460 LDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEEL 538 (552)
Q Consensus 460 L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 538 (552)
|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++.+ |.+..++ ...+
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~---N~l~~~~------------~~~~ 275 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAH---NNLTLLP------------HDLF 275 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTT---SCCCCCC------------TTTT
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCC---CCCCccC------------hhHh
Confidence 55555555544 3445555555555555553 4444443355555555555533 2232211 1224
Q ss_pred cCCCCCceEEEE
Q 048813 539 LGLKYLEVISFT 550 (552)
Q Consensus 539 ~~L~~L~~L~l~ 550 (552)
..+++|+.|+++
T Consensus 276 ~~l~~L~~L~L~ 287 (440)
T 3zyj_A 276 TPLHHLERIHLH 287 (440)
T ss_dssp SSCTTCCEEECC
T ss_pred ccccCCCEEEcC
Confidence 567777777664
No 47
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.7e-12 Score=119.27 Aligned_cols=145 Identities=27% Similarity=0.392 Sum_probs=116.4
Q ss_pred eEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcCcEEeccCCCC
Q 048813 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQHLDLSESDI 467 (552)
Q Consensus 389 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l 467 (552)
+.++..++.+..+|. ...++++.|++.+|.+..++...+..+++|++|++++|.++.+|.. +..+.+|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 456677777777653 2346899999999999999988888999999999999999998754 68999999999999999
Q ss_pred cccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCCce
Q 048813 468 EELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYLEV 546 (552)
Q Consensus 468 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 546 (552)
+.+|.. +..+++|++|++++|. +..+|+..+..+++|++|++.+ |.+.++++ ..+..+++|+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~---N~l~~~~~------------~~~~~l~~L~~ 152 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQ---NQLKSVPD------------GVFDRLTSLQY 152 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS---SCCSCCCT------------TTTTTCTTCCE
T ss_pred CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCC---CccceeCH------------HHhccCCCccE
Confidence 998865 6899999999999995 8888887689999999999955 44443322 12455667777
Q ss_pred EEEE
Q 048813 547 ISFT 550 (552)
Q Consensus 547 L~l~ 550 (552)
|+++
T Consensus 153 L~l~ 156 (208)
T 2o6s_A 153 IWLH 156 (208)
T ss_dssp EECC
T ss_pred EEec
Confidence 6653
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=3.1e-12 Score=127.35 Aligned_cols=177 Identities=18% Similarity=0.270 Sum_probs=133.7
Q ss_pred eEEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC
Q 048813 368 FLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL 447 (552)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l 447 (552)
.+...+......+.+..+++++.|++++|.+..++.+..+++|+.|++.+|.+..++. +..+++|++|++++|.....
T Consensus 70 ~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 70 YLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC
T ss_pred EEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc
Confidence 3444555555566678889999999999999988888999999999999999888776 67899999999999955544
Q ss_pred CccccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccc-
Q 048813 448 PVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSI- 526 (552)
Q Consensus 448 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~- 526 (552)
+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..+|. +..+++|+.|++.++.......+.....
T Consensus 148 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L 223 (347)
T 4fmz_A 148 LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQITDITPVANMTRL 223 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCCCCCCchhhcCCcC
Confidence 4468999999999999999888876 8899999999999985 778876 7889999999996654433222111111
Q ss_pred ----ccCCCcchhHhhcCCCCCceEEEE
Q 048813 527 ----LFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 527 ----~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
+....-..+..+..+++|+.|+++
T Consensus 224 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 224 NSLKIGNNKITDLSPLANLSQLTWLEIG 251 (347)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CEEEccCCccCCCcchhcCCCCCEEECC
Confidence 112222223337788899988875
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.41 E-value=9.3e-13 Score=133.48 Aligned_cols=129 Identities=16% Similarity=0.260 Sum_probs=100.3
Q ss_pred CcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEE
Q 048813 384 GWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHL 460 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L 460 (552)
.+.+++++++.++.+..+|. +..+++|++|++.+|.+..+++..+..+++|++|++++|.++.+| ..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45678888888888877765 567788888888888888777766778888888888888888764 457888888888
Q ss_pred eccCCCCcccchhh-hcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 461 DLSESDIEELPGEL-KALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 461 ~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++++|.+..+|..+ .++++|++|++++|. +..+++..++.+++|++|++.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCC
Confidence 88888888888764 778888888888875 66666555788888888888554
No 50
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=1.1e-12 Score=131.37 Aligned_cols=149 Identities=25% Similarity=0.348 Sum_probs=118.5
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCCC--CC-CCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSE--IP-TCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT 445 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~--~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~ 445 (552)
+...+..+..+|. .-...++.|++++|.+..++. +. .+++|+.|++++|.+..+++..|..+++|++|+|++|.++
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 3444444444443 223468899999999988754 44 8899999999999999998877889999999999999999
Q ss_pred cCCc-cccCcCcCcEEeccCCCCccc-chhhhcCCCCCEEecCCCcCccccchhhh---cCCCCcceeeecCcCCCCCcc
Q 048813 446 NLPV-GISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLI---SNLSRLHVLRMFGASHNAFDE 520 (552)
Q Consensus 446 ~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~~i---~~l~~L~~L~l~~~~~~~~~~ 520 (552)
.+|. .+..+.+|++|+|++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|++|++. .|.+..
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~---~N~l~~ 177 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLS---SNKLKK 177 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECC---SSCCCC
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECC---CCCCCc
Confidence 8764 688999999999999999987 5678999999999999995 889998755 678999999994 455654
Q ss_pred cc
Q 048813 521 AS 522 (552)
Q Consensus 521 ~~ 522 (552)
++
T Consensus 178 l~ 179 (361)
T 2xot_A 178 LP 179 (361)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.40 E-value=2.9e-12 Score=133.54 Aligned_cols=127 Identities=29% Similarity=0.390 Sum_probs=86.4
Q ss_pred ccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCcEEec
Q 048813 386 EKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDL 462 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l 462 (552)
.+++.|++++|.+..++ .+..+++|+.|++.+|.+..+++..|..+++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46777777777776653 46667777777777777776655556777777777777777777654 3567777777777
Q ss_pred cCCCCccc-chhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 463 SESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 463 ~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|.+..+ |..+..+++|++|++++|. +..+++..++.+++|++|++.++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC
T ss_pred CCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC
Confidence 77776655 3456677777777777764 55554444667777777777544
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=130.98 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=118.1
Q ss_pred EEcCCcceeCC--CcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC
Q 048813 370 VYAGVGLVEAP--DVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT 445 (552)
Q Consensus 370 ~~~~~~~~~~~--~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~ 445 (552)
...+......+ .+..+++++.|++++|.+..++ .+..+++|+.|++++|.+..++...+..+++|++|++++|.++
T Consensus 58 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 58 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137 (353)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS
T ss_pred ECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc
Confidence 33333444443 3677889999999999988764 3788999999999999999999887889999999999999999
Q ss_pred cCCc--cccCcCcCcEEeccCC-CCcccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 446 NLPV--GISKVVSLQHLDLSES-DIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 446 ~lp~--~~~~l~~L~~L~l~~~-~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
.+|. .+..+++|++|++++| .+..+| ..+..+++|++|++++|. +..+++..++.+++|++|++.++.
T Consensus 138 ~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC
T ss_pred ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc
Confidence 9986 7889999999999998 577774 578899999999999986 555543348999999999996543
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.38 E-value=6.6e-13 Score=130.19 Aligned_cols=126 Identities=19% Similarity=0.320 Sum_probs=56.8
Q ss_pred CCcccceEEEeec-CCccc-CC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC-cCCccccCcCcCc
Q 048813 383 RGWEKARRLSLMH-NQITN-LS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT-NLPVGISKVVSLQ 458 (552)
Q Consensus 383 ~~~~~l~~L~l~~-~~l~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~ 458 (552)
..+++++.|++++ |.+.. +| .+..+++|++|++.+|.+....+..+..+++|++|++++|.++ .+|..++.+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 3444555555552 43332 22 2444455555555555444222222444555555555555444 3444455555555
Q ss_pred EEeccCCCCc-ccchhhhcCC-CCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 459 HLDLSESDIE-ELPGELKALV-NLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 459 ~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
+|++++|.+. .+|..++.+. +|++|++++|.....+|.. ++.++ |++|++
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~L 204 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDL 204 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEEC
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEEC
Confidence 5555555444 4454555444 4555555544322233332 44443 444444
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.38 E-value=1.2e-12 Score=127.90 Aligned_cols=139 Identities=27% Similarity=0.353 Sum_probs=102.3
Q ss_pred cCCcceeCCCcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCccc---CchhhcCCCCceEEEcCCCCCCc
Q 048813 372 AGVGLVEAPDVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMI---PNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~---~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
.+.....+|. .-.+++++|++++|.+..++. +..+++|+.|++.+|.+... +.. +..+++|++|++++|.+..
T Consensus 15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEE
T ss_pred CCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcccc
Confidence 3333444443 223578889998888887764 57888889999988877654 333 4568888888888888888
Q ss_pred CCccccCcCcCcEEeccCCCCcccch--hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 447 LPVGISKVVSLQHLDLSESDIEELPG--ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 447 lp~~~~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+|..+..+++|++|++++|.+..+|. .+..+++|++|++++|. +...++..++.+++|++|++.++
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTC
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCC
Confidence 88888888888888888888887764 67788888888888885 45444444778888888888554
No 55
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.9e-12 Score=129.60 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=117.8
Q ss_pred ceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhc-CCCCceEEEcCCCCCCcCC-ccccCcCcCcEEeccCC
Q 048813 388 ARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQ-FMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLDLSES 465 (552)
Q Consensus 388 l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~ 465 (552)
.+.++++++.+..+|.. -...++.|++++|.+..++...+. .+++|++|+|++|.++.+| ..+..+.+|++|+|++|
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 35788999998888752 235689999999999999988777 8999999999999999986 56999999999999999
Q ss_pred CCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCC
Q 048813 466 DIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYL 544 (552)
Q Consensus 466 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 544 (552)
.++.+|. .+..+++|++|++++|. +..+++..+..+++|++|++.+ |.+..++.. .+..+..+++|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~---N~l~~l~~~---------~~~~~~~l~~L 165 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ---NQISRFPVE---------LIKDGNKLPKL 165 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS---SCCCSCCGG---------GTC----CTTC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC---CcCCeeCHH---------HhcCcccCCcC
Confidence 9999876 47899999999999996 7777665699999999999954 555544332 22223556666
Q ss_pred ceEEEE
Q 048813 545 EVISFT 550 (552)
Q Consensus 545 ~~L~l~ 550 (552)
+.|+++
T Consensus 166 ~~L~L~ 171 (361)
T 2xot_A 166 MLLDLS 171 (361)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 666653
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.38 E-value=3.4e-12 Score=137.82 Aligned_cols=146 Identities=24% Similarity=0.307 Sum_probs=121.0
Q ss_pred cCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc
Q 048813 372 AGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV 449 (552)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 449 (552)
.+.+...+|..- ...+++|++++|.+..++ .|..+++|++|++++|.+..+++..|..+++|++|+|++|+++.+|.
T Consensus 39 ~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 39 MELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 344444554311 247999999999999886 47899999999999999999998889999999999999999999875
Q ss_pred -cccCcCcCcEEeccCCCCcccch-hhhcCCCCCEEecCCCcCccc--cchhhhcCCCCcceeeecCcCCCCCccccc
Q 048813 450 -GISKVVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTRNLIT--IPRQLISNLSRLHVLRMFGASHNAFDEASE 523 (552)
Q Consensus 450 -~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 523 (552)
.|..+.+|++|++++|+++.+|+ .+++|++|++|++++|. +.. +|.. ++.+++|++|++. .|.+.++++
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~---~N~l~~~~~ 190 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLS---SNKIQSIYC 190 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECC---SSCCCEECG
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhccc---Ccccccccc
Confidence 58999999999999999999986 48999999999999996 554 4554 8899999999995 455555443
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.37 E-value=1e-12 Score=123.58 Aligned_cols=169 Identities=13% Similarity=0.260 Sum_probs=132.8
Q ss_pred ceeCCCcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCC-CcccCchhhcCCCCceEEEcCC-CCCCcCC-cc
Q 048813 376 LVEAPDVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNG-LQMIPNDFFQFMPSLKVLNLSY-SKLTNLP-VG 450 (552)
Q Consensus 376 ~~~~~~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~ 450 (552)
...+|. -..+++.|++++|.+..++. +..+++|+.|++.+|. +..+++..|..+++|++|++++ |.++.+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 334444 33489999999999998764 7889999999999996 9899987789999999999999 9999986 57
Q ss_pred ccCcCcCcEEeccCCCCcccchhhhcCCCCC---EEecCCCcCccccchhhhcCCCCcc-eeeecCcCCCCCcccccccc
Q 048813 451 ISKVVSLQHLDLSESDIEELPGELKALVNLK---CLDLEYTRNLITIPRQLISNLSRLH-VLRMFGASHNAFDEASEDSI 526 (552)
Q Consensus 451 ~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~lP~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~ 526 (552)
+..+++|++|++++|.++.+|. +..+.+|+ +|++++|..+..+|+..+..+++|+ +|++.+ |.+..+++..+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~---n~l~~i~~~~~ 176 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN---NGFTSVQGYAF 176 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS---CCCCEECTTTT
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC---CCCcccCHhhc
Confidence 8899999999999999999997 88888888 9999999558899987789999999 999954 44554444322
Q ss_pred ---------ccCC--C-cchhHhhcCC-CCCceEEEE
Q 048813 527 ---------LFGG--G-ELIVEELLGL-KYLEVISFT 550 (552)
Q Consensus 527 ---------~~~~--~-~~~~~~l~~L-~~L~~L~l~ 550 (552)
+..+ - ......+..+ ++|+.|+++
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence 1111 1 1112335667 888888764
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=3.8e-12 Score=132.63 Aligned_cols=133 Identities=25% Similarity=0.351 Sum_probs=111.4
Q ss_pred CcCCcccceEEEeecCCcccC--CCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L 457 (552)
.+..+++++.|++++|.+..+ ..+..+++|+.|++.+|.+..+|...|..+++|++|++++|.+..+ |..+..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 466788899999999988776 3478888999999999999888887788899999999999988875 6678889999
Q ss_pred cEEeccCCCCcccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 458 QHLDLSESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 458 ~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
++|++++|.+..++ ..+..+++|++|++++|. +..+|...+..+++|+.|++.++.
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCc
Confidence 99999999888764 568888999999999885 778887768889999999986543
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=2.1e-12 Score=137.52 Aligned_cols=140 Identities=25% Similarity=0.391 Sum_probs=122.1
Q ss_pred eEEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC
Q 048813 368 FLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL 447 (552)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l 447 (552)
.+......+..++.+..+++|+.|++++|.+..++.+..+++|+.|++++|.+..++. +..+++|+.|+|++|.++.+
T Consensus 69 ~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 69 KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCSSCCCCC
T ss_pred EEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCCCccCCc
Confidence 3444444555556677889999999999999999999999999999999999988754 77899999999999999998
Q ss_pred CccccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 448 PVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 448 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
..++.+++|+.|+|++|.+..+++ +..+++|++|+|++|. +..+|. +..+++|+.|++.+|.
T Consensus 147 -~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~--l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 -TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTTCTTCSEEECCSEE
T ss_pred -hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChH--HccCCCCCEEEccCCc
Confidence 588999999999999999998876 9999999999999995 888875 8999999999997654
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.37 E-value=1.1e-12 Score=128.62 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=125.7
Q ss_pred ccceEEEeecCCccc---C-CCCCCCCccceeeccc-CCCcccCchhhcCCCCceEEEcCCCCCC-cCCccccCcCcCcE
Q 048813 386 EKARRLSLMHNQITN---L-SEIPTCPHLLTCFLNR-NGLQMIPNDFFQFMPSLKVLNLSYSKLT-NLPVGISKVVSLQH 459 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~---l-~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~ 459 (552)
.+++.|+++++.+.. + +.+..+++|++|++.+ |.+....+..+..+++|++|++++|.++ .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 479999999999874 3 4578899999999995 7776433344788999999999999998 68999999999999
Q ss_pred EeccCCCCc-ccchhhhcCCCCCEEecCCCcCccccchhhhcCCC-CcceeeecCcCCCCCcccccccc---------cc
Q 048813 460 LDLSESDIE-ELPGELKALVNLKCLDLEYTRNLITIPRQLISNLS-RLHVLRMFGASHNAFDEASEDSI---------LF 528 (552)
Q Consensus 460 L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~---------~~ 528 (552)
|++++|.+. .+|..+..+++|++|++++|.....+|.. ++.++ +|++|++.+ |.+.+..+... +.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~---N~l~~~~~~~~~~l~L~~L~Ls 205 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISR---NRLTGKIPPTFANLNLAFVDLS 205 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCS---SEEEEECCGGGGGCCCSEEECC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcC---CeeeccCChHHhCCcccEEECc
Confidence 999999988 78999999999999999999743488887 88898 999999955 44443222221 00
Q ss_pred CC--CcchhHhhcCCCCCceEEEE
Q 048813 529 GG--GELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 529 ~~--~~~~~~~l~~L~~L~~L~l~ 550 (552)
.+ .+.....+..+++|+.|+++
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECC
T ss_pred CCcccCcCCHHHhcCCCCCEEECC
Confidence 11 12234556778888888875
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.36 E-value=3.1e-12 Score=136.40 Aligned_cols=142 Identities=24% Similarity=0.301 Sum_probs=115.8
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
+...+.+...+|. .-.+.++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|.++.
T Consensus 12 ~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 12 YQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp EECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc
Confidence 3344444555554 22357899999999988764 57889999999999999988887778899999999999999988
Q ss_pred CC-ccccCcCcCcEEeccCCCCcccch-hhhcCCCCCEEecCCCcCccc--cchhhhcCCCCcceeeecCc
Q 048813 447 LP-VGISKVVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTRNLIT--IPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 447 lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lP~~~i~~l~~L~~L~l~~~ 513 (552)
+| ..++.+.+|++|++++|.+..+|. .++++++|++|++++|. +.. +|.. ++++++|++|++.++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSN 159 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTS
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCC
Confidence 75 688999999999999999998876 58899999999999985 554 6776 899999999999554
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=2.5e-12 Score=137.80 Aligned_cols=128 Identities=16% Similarity=0.263 Sum_probs=86.4
Q ss_pred cccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCcEEe
Q 048813 385 WEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQHLD 461 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~ 461 (552)
+.+++.+++.++.+..+|. +..+++|++|++.+|.+..+++..|..+++|++|+|++|.++.+|+ .++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4566777777777666654 4556677777777777776666556677777777777777776643 456777777777
Q ss_pred ccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 462 LSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 462 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+++|.+..+|.. ++++++|++|++++|. +..+|+..++.+++|++|++.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC
Confidence 777777777665 3677777777777774 55555544677777777777443
No 63
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=6.6e-12 Score=127.15 Aligned_cols=125 Identities=23% Similarity=0.408 Sum_probs=84.8
Q ss_pred cCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcCc
Q 048813 382 VRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQ 458 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~ 458 (552)
+..+++++.|++++|.+..++ .+..+++|+.|++.+|.+..+++..+..+++|++|++++|.++.+|.. ++.+++|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 345667777777777776653 456777777777777777777666667777777777777777777655 46777777
Q ss_pred EEeccCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 459 HLDLSESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 459 ~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
+|++++|.+..++. .+..+++|++|++++|. +..++ ++.+++|++|++
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l 193 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANV 193 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEEC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeec
Confidence 77777777776643 46777777777777774 55554 334444444444
No 64
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.35 E-value=6.1e-12 Score=112.26 Aligned_cols=123 Identities=24% Similarity=0.393 Sum_probs=97.9
Q ss_pred ceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcCcEEeccCCC
Q 048813 388 ARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQHLDLSESD 466 (552)
Q Consensus 388 l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 466 (552)
.+.++++++.+..+|. ...++++.|++.+|.+..++...+..+++|++|++++|.++.+|.. +..+.+|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3567777777777663 2346788889988888888877778888899999999988887654 6888889999999988
Q ss_pred Ccccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 467 IEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 467 l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
++.+|.. +..+++|++|++++|. +..+|+..+..+++|++|++.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecC
Confidence 8888765 5788889999998884 7788877567888888888844
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=5.3e-12 Score=135.25 Aligned_cols=124 Identities=23% Similarity=0.407 Sum_probs=88.3
Q ss_pred CCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcCcE
Q 048813 383 RGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQH 459 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~ 459 (552)
..+++++.|++++|.+..++ .+..+++|+.|++.+|.+..+++..|+.+++|++|+|++|.++.+|.. ++.+++|++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 45667788888887777654 467777788888888877777777677788888888888887777665 477778888
Q ss_pred EeccCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 460 LDLSESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 460 L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
|++++|.+..+|+ .++.+++|++|++++|. +..+| ++.+++|++|++
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEEC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhc
Confidence 8888887776654 57777888888887774 55555 334455555444
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=3.8e-12 Score=135.69 Aligned_cols=131 Identities=23% Similarity=0.283 Sum_probs=112.4
Q ss_pred CcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L 457 (552)
.+..++++++|++++|.+..++ .+..+++|++|++.+|.+..+++..|..+++|++|++++|.++.+|. .++.+++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 5678899999999999988774 37889999999999999998887778999999999999999999875 68999999
Q ss_pred cEEeccCCCCcc--cchhhhcCCCCCEEecCCCcCccccchhhhcCCCCc----ceeeecC
Q 048813 458 QHLDLSESDIEE--LPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRL----HVLRMFG 512 (552)
Q Consensus 458 ~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L----~~L~l~~ 512 (552)
++|++++|.+.. +|..++++++|++|++++|. +..+|+..++.+++| ..|++.+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCC
Confidence 999999998885 78999999999999999995 666665447777777 6677644
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.35 E-value=7.4e-12 Score=134.99 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=93.2
Q ss_pred cceEEEeecCCcccC--CCCC-------CCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCc---
Q 048813 387 KARRLSLMHNQITNL--SEIP-------TCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKV--- 454 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l--~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l--- 454 (552)
+++.|++++|.+... ..+. .+.+|+.|++.+|.+..+|...+..+++|++|++++|.++.+|..+...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 577777777766543 1233 5567888888888888888777777888888888888888777654332
Q ss_pred -----CcCcEEeccCCCCcccchhhh--cCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 455 -----VSLQHLDLSESDIEELPGELK--ALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 455 -----~~L~~L~l~~~~l~~lp~~i~--~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|++|++++|.++.+|..+. .+++|++|++++|. +..+|.. ++.+++|++|++.++
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ-PLNSSTLKGFGIRNQ 546 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCG-GGGCSSCCEEECCSC
T ss_pred cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChh-hhcCCCCCEEECCCC
Confidence 278888888888888888776 88888888888885 6668876 778888888888654
No 68
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=5.9e-12 Score=120.00 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=119.8
Q ss_pred eEEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC
Q 048813 368 FLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL 447 (552)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l 447 (552)
.+...+.....++.+..+++++.|++++|.+..++.+..+++|+.|++++|.+..++.. .. .+|++|++++|.++.+
T Consensus 45 ~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 45 NFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGI--PS-ACLSRLFLDNNELRDT 121 (263)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTC--CC-SSCCEEECCSSCCSBS
T ss_pred EEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcc--cc-CcccEEEccCCccCCC
Confidence 34445555566677778899999999999999988889999999999999999888763 33 8999999999999998
Q ss_pred CccccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 448 PVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 448 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
| .++.+++|++|++++|.++.+| .+..+++|++|++++|. +..++. +..+++|+.|++.++.
T Consensus 122 ~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 122 D-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp G-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEE
T ss_pred h-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCc
Confidence 7 6899999999999999999997 78999999999999995 777743 8999999999996643
No 69
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=2.1e-12 Score=111.75 Aligned_cols=129 Identities=17% Similarity=0.217 Sum_probs=103.8
Q ss_pred CCCccceeecccCCCc--ccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcc-cchhhhcCCCCCE
Q 048813 406 TCPHLLTCFLNRNGLQ--MIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEE-LPGELKALVNLKC 482 (552)
Q Consensus 406 ~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~ 482 (552)
..++++.|++.+|.+. .+|. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3478999999999987 6776 468899999999999999988 688999999999999999998 8888888999999
Q ss_pred EecCCCcCccccch-hhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCCceEEE
Q 048813 483 LDLEYTRNLITIPR-QLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYLEVISF 549 (552)
Q Consensus 483 L~l~~~~~l~~lP~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 549 (552)
|++++|. +..+|. ..++.+++|++|++.++ .+.++++ .....+..+++|+.|++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N---~l~~~~~---------~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC---EVTNLND---------YRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTC---GGGGSTT---------HHHHHHHHCTTCCEETT
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCC---cccchHH---------HHHHHHHHCCCcccccC
Confidence 9999996 777652 33899999999999655 3432221 11234677888888764
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.35 E-value=3.2e-12 Score=137.95 Aligned_cols=121 Identities=21% Similarity=0.179 Sum_probs=102.9
Q ss_pred EEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCcEEeccCCCCcc
Q 048813 391 LSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDLSESDIEE 469 (552)
Q Consensus 391 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~ 469 (552)
.+-++..+..+|.- -.++++.|++++|.+..+|+..|..+++|++|+|++|.++.+|+ .|..+++|++|+|++|+++.
T Consensus 36 ~~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 36 YQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 34444455666531 12479999999999999998889999999999999999999865 68999999999999999999
Q ss_pred cchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 470 LPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 470 lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+|.. +.+|++|++|++++|. +..+|+..++++++|++|++.++
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccC
Confidence 9864 7899999999999995 88998876899999999999554
No 71
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=4.6e-12 Score=138.11 Aligned_cols=144 Identities=24% Similarity=0.268 Sum_probs=118.7
Q ss_pred eEEEcCCcceeCCCcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC
Q 048813 368 FLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT 445 (552)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~ 445 (552)
.+...+.....+|..- .+++++|++++|.+..++. +..+++|++|++.+|.+..+++..+..+++|++|++++|.++
T Consensus 8 ~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp EEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred eeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 3444444555555422 2689999999999988764 788999999999999998888877889999999999999999
Q ss_pred cCCc-cccCcCcCcEEeccCCCCcccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 446 NLPV-GISKVVSLQHLDLSESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 446 ~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
.+|. .++.+.+|++|++++|.+..+| ..++++++|++|++++|. +..+++..++++++|++|++.++
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSS
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCC
Confidence 9886 5999999999999999998887 568999999999999996 55555444889999999999554
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=4.2e-12 Score=141.61 Aligned_cols=145 Identities=22% Similarity=0.309 Sum_probs=119.6
Q ss_pred ceEEEcCCcceeCCCcCCcccceEEEeecCCcccC--CCCCCCCccceeecccC-CCcccCchhhcCCCCceEEEcCCCC
Q 048813 367 NFLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRN-GLQMIPNDFFQFMPSLKVLNLSYSK 443 (552)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l--~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~ 443 (552)
........+...+|. -.++++.|++++|.+..+ ..+..+++|++|++++| ....+++..|..+++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 344555566666776 567999999999999876 35789999999999999 4556766678999999999999999
Q ss_pred CCcC-CccccCcCcCcEEeccCCCCcc-cchh--hhcCCCCCEEecCCCcCcccc-chhhhcCCCCcceeeecCcC
Q 048813 444 LTNL-PVGISKVVSLQHLDLSESDIEE-LPGE--LKALVNLKCLDLEYTRNLITI-PRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 444 l~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-P~~~i~~l~~L~~L~l~~~~ 514 (552)
+..+ |..++.+++|++|++++|.+.. +|.. +++|++|++|++++|. +..+ |+..++++++|++|++.++.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 9986 8899999999999999998875 5655 8999999999999996 5554 33348999999999996543
No 73
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.34 E-value=4.9e-12 Score=135.95 Aligned_cols=167 Identities=25% Similarity=0.317 Sum_probs=129.4
Q ss_pred CcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L 457 (552)
.+.+++++++|++++|.+..++ .+..+++|++|++++|.+..+++..+.++++|++|++++|.++.+| ..++.+.+|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 4678899999999999988863 4788999999999999999887667899999999999999999876 789999999
Q ss_pred cEEeccCCCCc--ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcc----eeeecCcCCCCCcccccccc-----
Q 048813 458 QHLDLSESDIE--ELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLH----VLRMFGASHNAFDEASEDSI----- 526 (552)
Q Consensus 458 ~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~----~L~l~~~~~~~~~~~~~~~~----- 526 (552)
++|++++|.+. .+|..++++++|++|++++|. +..+++..++.+++|+ +|++ +.|.+.++++...
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l---~~n~l~~~~~~~~~~~~L 206 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDM---SLNPIDFIQDQAFQGIKL 206 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEEC---TTCCCCEECTTTTTTCEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeec---cCCCcceeCcccccCcee
Confidence 99999999987 479999999999999999995 6666654466666655 6777 4444555444322
Q ss_pred ----ccCC---CcchhHhhcCCCCCceEEEEE
Q 048813 527 ----LFGG---GELIVEELLGLKYLEVISFTL 551 (552)
Q Consensus 527 ----~~~~---~~~~~~~l~~L~~L~~L~l~~ 551 (552)
+... .......+..++.|+.+.+.+
T Consensus 207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred eeeeccCCccchhHHHHHhccccccccccccc
Confidence 0111 123445567777777776643
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.34 E-value=8.2e-12 Score=123.41 Aligned_cols=125 Identities=23% Similarity=0.339 Sum_probs=86.7
Q ss_pred ccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEecc
Q 048813 386 EKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLS 463 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 463 (552)
+.++.|++++|.+..++. +..+++|++|++.+|.+..+++..+..+++|++|++++|.++.+|..+. .+|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 467777777777776643 6677777777777777777655556777777788877777777776654 577777777
Q ss_pred CCCCcccch-hhhcCCCCCEEecCCCcCccc--cchhhhcCCCCcceeeecCc
Q 048813 464 ESDIEELPG-ELKALVNLKCLDLEYTRNLIT--IPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 464 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lP~~~i~~l~~L~~L~l~~~ 513 (552)
+|.+..+|. .+.++++|++|++++|. +.. ++...+..+++|++|++.++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred CCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC
Confidence 777776654 46777778888877775 332 22223677777777777544
No 75
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=1.1e-11 Score=136.81 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=79.8
Q ss_pred CccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCc--------CcCcEEeccCCCCcccchhhh--cC
Q 048813 408 PHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKV--------VSLQHLDLSESDIEELPGELK--AL 477 (552)
Q Consensus 408 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l--------~~L~~L~l~~~~l~~lp~~i~--~L 477 (552)
.+|+.|++++|.+..+|..++..+++|+.|+|++|.++.+|..+... ++|+.|+|++|.+..+|..+. .+
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence 36777777777777777777777888888888888888777655443 378888888888888888776 88
Q ss_pred CCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 478 VNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 478 ~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|+.|++++|. +..+|.. ++.+++|+.|++.++
T Consensus 753 ~~L~~L~Ls~N~-L~~lp~~-l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 753 PYLSNMDVSYNC-FSSFPTQ-PLNSSQLKAFGIRHQ 786 (876)
T ss_dssp TTCCEEECCSSC-CSSCCCG-GGGCTTCCEEECCCC
T ss_pred CCcCEEEeCCCC-CCccchh-hhcCCCCCEEECCCC
Confidence 888888888875 6668776 778888888888653
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.33 E-value=1.4e-11 Score=127.95 Aligned_cols=129 Identities=21% Similarity=0.360 Sum_probs=87.7
Q ss_pred CCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCc
Q 048813 379 APDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQ 458 (552)
Q Consensus 379 ~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 458 (552)
.+....+++++.|++++|.+..++.+..+++|+.|++.+|.+..+++ +..+++|++|++++|.++.+|. +..+++|+
T Consensus 214 ~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 290 (466)
T 1o6v_A 214 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALT 290 (466)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred cccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccC
Confidence 33344556667777777666666666666777777777776666554 5567777777777777777664 66777777
Q ss_pred EEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 459 HLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 459 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
+|++++|.+..+|. +..+++|++|++++|. +..+++ ++.+++|+.|++.+|.
T Consensus 291 ~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 291 NLELNENQLEDISP-ISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp EEECCSSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSSC
T ss_pred eEEcCCCcccCchh-hcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCCc
Confidence 77777777776664 6677777777777774 555554 6677777777775543
No 77
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=5.9e-12 Score=113.95 Aligned_cols=122 Identities=24% Similarity=0.333 Sum_probs=94.6
Q ss_pred eEEEeecCCcccCCCCCCCCccceeecccCCCcccCch-hhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEeccCCC
Q 048813 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPND-FFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSESD 466 (552)
Q Consensus 389 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~ 466 (552)
+.++++++.+..+|... ..+++.|++.+|.+..++.. .+..+++|++|+|++|.++.+ |..+..+.+|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 56788888887776521 23788888888888877763 477888888888888888886 6778888888888888888
Q ss_pred Ccccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 467 IEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 467 l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTT
T ss_pred CCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCC
Confidence 8877654 7788888888888885 6666444488888888888854
No 78
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=9.7e-12 Score=112.54 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=100.0
Q ss_pred eEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEEeccCCCC
Q 048813 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLDLSESDI 467 (552)
Q Consensus 389 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l 467 (552)
+.++++++.+..+|.. -.++++.|++.+|.+..+|. .+..+++|++|+|++|.++.++ ..+..+.+|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4677888888877642 23678999999998888885 4788999999999999998875 4688999999999999999
Q ss_pred cccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 468 EELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 468 ~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
+.+|. .+..+++|++|++++|. +..+|++.+..+++|++|++.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred CEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence 88875 58889999999999885 7888887688899999999855
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.33 E-value=8e-12 Score=131.64 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=57.9
Q ss_pred EEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEeccCCCCc
Q 048813 390 RLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSESDIE 468 (552)
Q Consensus 390 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~ 468 (552)
.+++++|.+..+|.... ++++.|++++|.+..+++..+..+++|++|++++|.++.+ |..++.+++|++|++++|.++
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 44555555554443111 4555555555555554444445555555555555555544 445555555555555555555
Q ss_pred ccchhhhcCCCCCEEecCCCcCccc--cchhhhcCCCCcceeeec
Q 048813 469 ELPGELKALVNLKCLDLEYTRNLIT--IPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 469 ~lp~~i~~L~~L~~L~l~~~~~l~~--lP~~~i~~l~~L~~L~l~ 511 (552)
.+|.. .+++|++|++++|. +.. +|.. ++.+++|++|++.
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLS 123 (520)
T ss_dssp EEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEE
T ss_pred ecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEec
Confidence 55544 45555555555553 332 3333 5555555555553
No 80
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.33 E-value=1.4e-11 Score=121.74 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=77.0
Q ss_pred CcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc---CCccccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN---LPVGISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~---lp~~~~~l~~L 457 (552)
.+..+++++.|++++|.+..++... .++|+.|++.+|.+..++...+..+++|++|++++|.+.. .|..+..+++|
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred HhcCCCCCCEEECCCCcCCccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 3445566777777777666554321 2566666666666666666556666777777777766642 34556666666
Q ss_pred cEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 458 QHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 458 ~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
++|++++|.+..+|..+. ++|++|++++|. +..+++..+..+++|++|++.+
T Consensus 174 ~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCS
T ss_pred CEEECCCCccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCC
Confidence 666666666666665443 556666666664 4444333366666666666633
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.33 E-value=1.7e-11 Score=127.32 Aligned_cols=138 Identities=22% Similarity=0.285 Sum_probs=105.3
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP 448 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp 448 (552)
+...+......+.+..+++++.|++++|.+..++.+..+++|+.|++.+|.+..+++ +..+++|++|++++|.++.+|
T Consensus 226 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred EECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence 333444444455566777888888888888877777788888888888888877765 667888888888888888876
Q ss_pred ccccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 449 VGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 449 ~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
. ++.+++|++|++++|.+..++. +..+++|+.|++++|. +..+|. +..+++|+.|++.+|
T Consensus 304 ~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 304 P-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVSS--LANLTNINWLSAGHN 363 (466)
T ss_dssp G-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSS
T ss_pred h-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCchh--hccCCCCCEEeCCCC
Confidence 4 7788888888888888877765 7788888888888884 666654 788888888888544
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.32 E-value=1.4e-11 Score=127.19 Aligned_cols=133 Identities=18% Similarity=0.213 Sum_probs=102.4
Q ss_pred EEcCCcceeCCCcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCc
Q 048813 370 VYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPV 449 (552)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~ 449 (552)
...+......+.+..++++++|++++|.+..++ +..+++|+.|++++|.+..++ +..+++|++|++++|.++.+|
T Consensus 48 ~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~- 122 (457)
T 3bz5_A 48 DCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD- 122 (457)
T ss_dssp ECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC-
T ss_pred EccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec-
Confidence 333344444556677788888888888888875 778888888888888887765 567888888888888888876
Q ss_pred cccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 450 GISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 450 ~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++.++
T Consensus 123 -~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 123 -VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN 180 (457)
T ss_dssp -CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred -CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence 788888888888888888775 7778888888888886666663 677888888888544
No 83
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=4e-12 Score=134.45 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=94.2
Q ss_pred ccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcccchhhhcCCCCCEEecCCC
Q 048813 409 HLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLKCLDLEYT 488 (552)
Q Consensus 409 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~ 488 (552)
.|+.|++++|.+..+|. +..+++|++|+|++|.++.+|..++.+++|++|+|++|.++.+| .++.|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 47888888888888775 67788888999988888888888888888999999888888888 7888888999998888
Q ss_pred cCcccc--chhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCCceEEE
Q 048813 489 RNLITI--PRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYLEVISF 549 (552)
Q Consensus 489 ~~l~~l--P~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 549 (552)
. +..+ |.. ++.+++|++|++. .|.+.+.++. ...-+..+++|+.|++
T Consensus 519 ~-l~~~~~p~~-l~~l~~L~~L~L~---~N~l~~~~~~---------~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 R-LQQSAAIQP-LVSCPRLVLLNLQ---GNSLCQEEGI---------QERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CCSSSTTGG-GGGCTTCCEEECT---TSGGGGSSSC---------TTHHHHHCTTCSEEEC
T ss_pred C-CCCCCCcHH-HhcCCCCCEEEec---CCcCCCCccH---------HHHHHHHCcccCccCC
Confidence 5 6777 555 8888888888884 4445543322 1122334677777653
No 84
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=4.9e-12 Score=133.75 Aligned_cols=121 Identities=23% Similarity=0.270 Sum_probs=108.2
Q ss_pred cceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCC
Q 048813 387 KARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESD 466 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 466 (552)
.++.|++++|.+..+|.+..+++|+.|++++|.+..+|.. ++.+++|++|+|++|.++.+| .++.+++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 5889999999999999899999999999999999988875 788999999999999999998 89999999999999999
Q ss_pred Cccc--chhhhcCCCCCEEecCCCcCccccchh---hhcCCCCcceeee
Q 048813 467 IEEL--PGELKALVNLKCLDLEYTRNLITIPRQ---LISNLSRLHVLRM 510 (552)
Q Consensus 467 l~~l--p~~i~~L~~L~~L~l~~~~~l~~lP~~---~i~~l~~L~~L~l 510 (552)
++.+ |..++.|++|++|++++|. +..+|+. .+..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 9988 8999999999999999996 7777653 2345888888864
No 85
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=9.7e-12 Score=109.91 Aligned_cols=119 Identities=24% Similarity=0.278 Sum_probs=104.8
Q ss_pred eCCC-cCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC--ccccCc
Q 048813 378 EAPD-VRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP--VGISKV 454 (552)
Q Consensus 378 ~~~~-~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l 454 (552)
.++. +..+++++.|++++|.+..+..+..+++|+.|++.+|.+...++..+..+++|++|++++|.++.+| ..+..+
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 119 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC
Confidence 3443 3678899999999999998878889999999999999998855566777999999999999999986 789999
Q ss_pred CcCcEEeccCCCCcccch----hhhcCCCCCEEecCCCcCccccchh
Q 048813 455 VSLQHLDLSESDIEELPG----ELKALVNLKCLDLEYTRNLITIPRQ 497 (552)
Q Consensus 455 ~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~lP~~ 497 (552)
++|++|++++|.+..+|. .+..+++|++|++++|. +..+|++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 120 ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999999999987 78999999999999995 7777753
No 86
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.32 E-value=9.9e-12 Score=123.79 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=74.9
Q ss_pred CCcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc------CHHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL------RLENIQET 149 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~------~~~~~~~~ 149 (552)
.+.|+||++++++|.+.+..+ +++.|+|++|+|||||+++++++. + .+|+++.... +...+...
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHHHHH
Confidence 355899999999999988765 799999999999999999998764 1 6777765432 45566666
Q ss_pred HHHHcCCC--------------Cc--ccccccHHHHHHHHHHHhcc-ceEEEEEcccccc
Q 048813 150 IGEKIGLL--------------ND--TWKNRRIEQKALDIFRILKE-QKFVLLLDDLWQR 192 (552)
Q Consensus 150 i~~~l~~~--------------~~--~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~ 192 (552)
+.+.+... .. .....+..+....+.+.... ++++||+||++..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~ 140 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYL 140 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGG
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHH
Confidence 66655420 00 00123445555556555543 4899999999763
No 87
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.31 E-value=8.6e-12 Score=129.05 Aligned_cols=144 Identities=22% Similarity=0.330 Sum_probs=117.2
Q ss_pred eEEEcCCcceeCCCcCCcccceEEEeecCCcccC--CCCCCCCccceeecccCCCc-ccCchhhcCCCCceEEEcCCCCC
Q 048813 368 FLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRNGLQ-MIPNDFFQFMPSLKVLNLSYSKL 444 (552)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l--~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~l 444 (552)
.+.....+...+|. -.+++++|++++|.+..+ ..+..+++|++|++.+|.+. .+++..|..+++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 34444455555665 236899999999999876 34789999999999999875 66667788999999999999999
Q ss_pred CcC-CccccCcCcCcEEeccCCCCcc-cchh--hhcCCCCCEEecCCCcCcccc-chhhhcCCCCcceeeecCcC
Q 048813 445 TNL-PVGISKVVSLQHLDLSESDIEE-LPGE--LKALVNLKCLDLEYTRNLITI-PRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 445 ~~l-p~~~~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-P~~~i~~l~~L~~L~l~~~~ 514 (552)
+.+ |..++.+++|++|++++|.+.. .|.. +..+++|++|++++|. +..+ |...++.+++|++|++.++.
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc
Confidence 886 7889999999999999999885 4544 8899999999999996 5555 55557899999999996543
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.31 E-value=1.5e-11 Score=132.20 Aligned_cols=143 Identities=21% Similarity=0.178 Sum_probs=112.0
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
+...+.+...+|.. -...++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|.+..
T Consensus 17 ~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 17 YNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred EECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence 33344444444431 1247899999999988873 47889999999999998888877778899999999999999987
Q ss_pred C-CccccCcCcCcEEeccCCCCccc-chhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 447 L-PVGISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 447 l-p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+ |..++.+++|++|++++|.+..+ |..++++++|++|++++|. +..++...+..+++|++|++.++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSS
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccC
Confidence 5 77899999999999999999887 5678899999999999985 66653111556899999999554
No 89
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=2.4e-12 Score=140.48 Aligned_cols=107 Identities=29% Similarity=0.380 Sum_probs=71.0
Q ss_pred cCCcccceEEEeecCCcccCC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEE
Q 048813 382 VRGWEKARRLSLMHNQITNLS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHL 460 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 460 (552)
+..+..++.|++++|.+..++ .+..+++|+.|+|++|.+..+|.. +..+++|++|+|++|.++.+|..++.|.+|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 344556677777777666654 344666677777777766666654 456677777777777777677667777777777
Q ss_pred eccCCCCcccchhhhcCCCCCEEecCCCc
Q 048813 461 DLSESDIEELPGELKALVNLKCLDLEYTR 489 (552)
Q Consensus 461 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 489 (552)
+|++|.+..+|.++++|++|++|+|++|.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 77777777777667777777777777664
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=3.1e-12 Score=141.07 Aligned_cols=130 Identities=18% Similarity=0.300 Sum_probs=108.1
Q ss_pred CcCCcccceEEEeecCCccc------------------CCC-CC--CCCccceeecccCCCc-ccCchhhcCCCCceEEE
Q 048813 381 DVRGWEKARRLSLMHNQITN------------------LSE-IP--TCPHLLTCFLNRNGLQ-MIPNDFFQFMPSLKVLN 438 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~------------------l~~-~~--~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~ 438 (552)
.+..+++++.|++++|.+.. +|. +. .+++|+.|++.+|.+. .+| ..+..+++|++|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEE
Confidence 46677899999999999887 654 44 7899999999999755 455 4578899999999
Q ss_pred cCCCC-CCc--CCccccCcC-------cCcEEeccCCCCcccch--hhhcCCCCCEEecCCCcCccccchhhhcCCCCcc
Q 048813 439 LSYSK-LTN--LPVGISKVV-------SLQHLDLSESDIEELPG--ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLH 506 (552)
Q Consensus 439 l~~~~-l~~--lp~~~~~l~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~ 506 (552)
+++|+ ++. +|..++.+. +|++|++++|.+..+|. .++++++|++|++++|. +..+| . ++.+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcce
Confidence 99997 875 788777766 99999999999999998 89999999999999886 66888 3 89999999
Q ss_pred eeeecCcC
Q 048813 507 VLRMFGAS 514 (552)
Q Consensus 507 ~L~l~~~~ 514 (552)
.|++.++.
T Consensus 599 ~L~Ls~N~ 606 (876)
T 4ecn_A 599 DLKLDYNQ 606 (876)
T ss_dssp EEECCSSC
T ss_pred EEECcCCc
Confidence 99996544
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.30 E-value=1.4e-11 Score=131.13 Aligned_cols=119 Identities=20% Similarity=0.325 Sum_probs=75.3
Q ss_pred eEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEeccCCCC
Q 048813 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSESDI 467 (552)
Q Consensus 389 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l 467 (552)
++++++++.+..+|... .++++.|++++|.+..+++..+..+++|++|++++|.++.+ |..++.+++|++|++++|.+
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 56666666666655421 25666667776666666655566666677777777766665 45566666677777776666
Q ss_pred cccchhhhcCCCCCEEecCCCcCccccc--hhhhcCCCCcceeeecC
Q 048813 468 EELPGELKALVNLKCLDLEYTRNLITIP--RQLISNLSRLHVLRMFG 512 (552)
Q Consensus 468 ~~lp~~i~~L~~L~~L~l~~~~~l~~lP--~~~i~~l~~L~~L~l~~ 512 (552)
+++|.. .+++|++|++++|. +..+| .. ++++++|++|++.+
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~-~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFND-FDVLPVCKE-FGNLTKLTFLGLSA 155 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSC-CSBCCCCGG-GGGCTTCCEEEEEC
T ss_pred CccCcc--ccccCCEEECCCCC-ccccCchHh-hcccCcccEEecCC
Confidence 666655 56667777776664 45443 33 66666677666643
No 92
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=1.5e-11 Score=121.62 Aligned_cols=128 Identities=19% Similarity=0.290 Sum_probs=72.6
Q ss_pred CcCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc---CCccccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN---LPVGISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~---lp~~~~~l~~L 457 (552)
.+..+++++.|++++|.+..++.... ++|+.|++.+|.+..++...+..+++|+.|++++|.++. .|..+..+ +|
T Consensus 97 ~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 97 AFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp GSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred HhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 34556677777777777666554222 667777777777777776666777777777777776652 24444444 44
Q ss_pred cEEeccCCCCcccch----------------------hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 458 QHLDLSESDIEELPG----------------------ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 458 ~~L~l~~~~l~~lp~----------------------~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
++|++++|.+..+|. .+..+++|++|++++|. +..+|+..++.+++|++|++.
T Consensus 175 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp SCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECC
T ss_pred CEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECC
Confidence 444444444444443 34445555555555543 444443334555555555553
No 93
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.30 E-value=8.8e-12 Score=137.56 Aligned_cols=83 Identities=24% Similarity=0.327 Sum_probs=40.3
Q ss_pred cccceEEEeecCCccc-CC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC-cCCccccCcCcCcEEe
Q 048813 385 WEKARRLSLMHNQITN-LS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT-NLPVGISKVVSLQHLD 461 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~ 461 (552)
+++++.|++++|.+.. +| .+..+++|+.|++.+|.+....+..+..+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 3445555555555442 12 2344555555555555554322233445555555555555554 2455555555555555
Q ss_pred ccCCCC
Q 048813 462 LSESDI 467 (552)
Q Consensus 462 l~~~~l 467 (552)
+++|.+
T Consensus 545 Ls~N~l 550 (768)
T 3rgz_A 545 LNTNLF 550 (768)
T ss_dssp CCSSEE
T ss_pred CCCCcc
Confidence 554433
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=6.4e-12 Score=130.88 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-Ccccc-CcCcCcEEeccCCCCcccchhhhcCCCCCEEe
Q 048813 407 CPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGIS-KVVSLQHLDLSESDIEELPGELKALVNLKCLD 484 (552)
Q Consensus 407 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~-~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 484 (552)
+++|+.|++.+|.+..+++..+..+++|++|++++|.++.. |..+. .+++|++|++++|.++.+|. ...+++|++|+
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 197 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLD 197 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEE
Confidence 34555555555555554443445555555555555555542 33443 45555555555555555543 22355555555
Q ss_pred cCCCcCccccchhhhcCCCCcceeee
Q 048813 485 LEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 485 l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
+++|. +..+|+. ++.+++|+.|++
T Consensus 198 Ls~N~-l~~~~~~-~~~l~~L~~L~L 221 (487)
T 3oja_A 198 LSSNK-LAFMGPE-FQSAAGVTWISL 221 (487)
T ss_dssp CCSSC-CCEECGG-GGGGTTCSEEEC
T ss_pred CCCCC-CCCCCHh-HcCCCCccEEEe
Confidence 55553 4555554 555555555555
No 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.29 E-value=1.1e-11 Score=127.91 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=110.0
Q ss_pred cCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEe
Q 048813 382 VRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLD 461 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 461 (552)
+..+++++.|++++|.+..++.+..+++|+.|++++|.+..+| +..+++|++|++++|.++.+| ++.+++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 4456789999999999999988899999999999999998876 678999999999999999986 89999999999
Q ss_pred ccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 462 LSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 462 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+++|.++.+| ++.+++|++|++++|. +..+| ++.+++|++|++.++
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCC
Confidence 9999999987 8999999999999995 77775 789999999999766
No 96
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=7e-12 Score=111.75 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=105.8
Q ss_pred EEEcCCcceeCCCcCCcc-cceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC
Q 048813 369 LVYAGVGLVEAPDVRGWE-KARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL 447 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l 447 (552)
+...+.....++.+..+. +++.|++++|.+..++.+..+++|+.|++++|.+..+|+..+..+++|++|++++|.++.+
T Consensus 24 L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 103 (176)
T 1a9n_A 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103 (176)
T ss_dssp EECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG
T ss_pred EEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcc
Confidence 344444444555555555 8999999999999988889999999999999999999988778999999999999999999
Q ss_pred Cc--cccCcCcCcEEeccCCCCcccchh----hhcCCCCCEEecCCCc
Q 048813 448 PV--GISKVVSLQHLDLSESDIEELPGE----LKALVNLKCLDLEYTR 489 (552)
Q Consensus 448 p~--~~~~l~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 489 (552)
|. .+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 104 ~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 87 889999999999999999999985 8999999999999885
No 97
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=4.4e-12 Score=124.56 Aligned_cols=126 Identities=18% Similarity=0.215 Sum_probs=99.9
Q ss_pred cccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchh-hcCCCCceEEEcCCCCCCcCCccccCcCcCcEEe
Q 048813 385 WEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDF-FQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLD 461 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 461 (552)
+++++.|++++|.+..++ .+..+++|+.|++++|.+..++... +..+++|++|++++|.++.+|.. ..+++|++|+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEE
Confidence 567888888888887764 3566788888888888887765443 35678899999999888888643 4588899999
Q ss_pred ccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 462 LSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 462 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+++|.++.+|..+..+++|++|++++|. +..+|.. +..+++|+.|++.++
T Consensus 198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~-~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA-LRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-CCCCTTCCEEECTTC
T ss_pred CCCCcCCcchhhhcccCcccEEECcCCc-ccchhhH-hhcCCCCCEEEccCC
Confidence 9999888888888888899999998885 7788876 788888888888543
No 98
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=128.78 Aligned_cols=139 Identities=25% Similarity=0.345 Sum_probs=114.7
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN 446 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 446 (552)
+...+.....+|..-. +++++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++|.++.
T Consensus 5 l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 83 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK 83 (520)
T ss_dssp EECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred EecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee
Confidence 3444444555554222 79999999999998875 47889999999999999998877778999999999999999999
Q ss_pred CCccccCcCcCcEEeccCCCCcc--cchhhhcCCCCCEEecCCCcCccccchhhhcCCCCc--ceeeecCcC
Q 048813 447 LPVGISKVVSLQHLDLSESDIEE--LPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRL--HVLRMFGAS 514 (552)
Q Consensus 447 lp~~~~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L--~~L~l~~~~ 514 (552)
+|.. .+.+|++|++++|.+.. +|..++++++|++|++++|. +... .++.+++| ++|++.++.
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECT
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeeccc
Confidence 9877 89999999999999986 57899999999999999985 5442 26778888 899886654
No 99
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.28 E-value=1.2e-11 Score=122.23 Aligned_cols=122 Identities=24% Similarity=0.402 Sum_probs=67.3
Q ss_pred ccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEecc
Q 048813 386 EKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLS 463 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 463 (552)
++++.|++++|.+..++ .+..+++|+.|++.+|.+..+++..+..+++|++|++++|.++.+|..+. .+|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 45566666666655542 25555666666666666655544445556666666666666666655444 456666666
Q ss_pred CCCCcccchh-hhcCCCCCEEecCCCcCccc--cchhhhcCCCCcceeeec
Q 048813 464 ESDIEELPGE-LKALVNLKCLDLEYTRNLIT--IPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 464 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--lP~~~i~~l~~L~~L~l~ 511 (552)
+|.+..+|.. +..+++|++|++++|. +.. +++..++.+ +|++|++.
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECc
Confidence 6666655543 5556666666666554 321 222224444 55555553
No 100
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=1.5e-11 Score=132.59 Aligned_cols=130 Identities=23% Similarity=0.257 Sum_probs=108.2
Q ss_pred CcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCC-------CceEEEcCCCCCCcCCcccc--
Q 048813 384 GWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMP-------SLKVLNLSYSKLTNLPVGIS-- 452 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-------~L~~L~l~~~~l~~lp~~~~-- 452 (552)
...+++.|++++|.+..++. +..+++|+.|++.+|.+..+|...+.... +|++|++++|.++.+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 44589999999999888765 35678899999999988888877665443 89999999999999998887
Q ss_pred CcCcCcEEeccCCCCcccchhhhcCCCCCEEecC------CCcCccccchhhhcCCCCcceeeecCcC
Q 048813 453 KVVSLQHLDLSESDIEELPGELKALVNLKCLDLE------YTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 453 ~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~------~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
.+++|++|++++|.++.+|..++++++|++|+++ +|.....+|.. ++.+++|++|++.++.
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSND 577 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSC
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCCc
Confidence 8999999999999998999999999999999995 45445678876 8889999999995544
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=9.1e-12 Score=122.33 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=99.2
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-Cccc-cCcCcCcEEecc
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGI-SKVVSLQHLDLS 463 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~-~~l~~L~~L~l~ 463 (552)
++++.|++++|.+..++. ..+++|+.|++.+|.+..+++..+..+++|++|++++|.++.+ |..+ ..+++|++|+++
T Consensus 99 ~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp TTCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 345555555555444322 2356788888888888777766677788888888888888875 4444 367888888888
Q ss_pred CCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCC
Q 048813 464 ESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKY 543 (552)
Q Consensus 464 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 543 (552)
+|.++.+|.. ..+++|++|++++|. +..+|+. +..+++|++|++.++ .+.+++ ..+..+++
T Consensus 178 ~N~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~L~~N---~l~~l~-------------~~~~~l~~ 238 (317)
T 3o53_A 178 YNFIYDVKGQ-VVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNN---KLVLIE-------------KALRFSQN 238 (317)
T ss_dssp TSCCCEEECC-CCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTS---CCCEEC-------------TTCCCCTT
T ss_pred CCcCcccccc-cccccCCEEECCCCc-CCcchhh-hcccCcccEEECcCC---cccchh-------------hHhhcCCC
Confidence 8888887643 357888888888885 7788776 788888888888543 443322 23456667
Q ss_pred CceEEE
Q 048813 544 LEVISF 549 (552)
Q Consensus 544 L~~L~l 549 (552)
|+.|++
T Consensus 239 L~~L~l 244 (317)
T 3o53_A 239 LEHFDL 244 (317)
T ss_dssp CCEEEC
T ss_pred CCEEEc
Confidence 776665
No 102
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=1.6e-11 Score=130.34 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=114.7
Q ss_pred CCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc--CCccccCcC
Q 048813 380 PDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN--LPVGISKVV 455 (552)
Q Consensus 380 ~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~ 455 (552)
..+..++++++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++|.++. .|..++.++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 35678899999999999998875 47889999999999999999998888999999999999999985 477899999
Q ss_pred cCcEEeccCCC-Ccccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 456 SLQHLDLSESD-IEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 456 ~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
+|++|++++|. +..+| ..+..+++|++|++++|......|.. ++.+++|++|++.++.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCc
Confidence 99999999996 77887 57899999999999999643345655 8888888888886544
No 103
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.27 E-value=9.9e-12 Score=121.77 Aligned_cols=129 Identities=20% Similarity=0.152 Sum_probs=69.3
Q ss_pred CCcccceEEEeecCCcccCCC-CCCC-----CccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc---CCccc--
Q 048813 383 RGWEKARRLSLMHNQITNLSE-IPTC-----PHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN---LPVGI-- 451 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l~~-~~~~-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~---lp~~~-- 451 (552)
..+++++.|++++|.+...+. +..+ ++|+.|++.+|.+..+++..+..+++|++|++++|.+.. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 445566666666666555432 1122 556666666666666555455566666666666665433 23333
Q ss_pred cCcCcCcEEeccCCCCcccc---hh-hhcCCCCCEEecCCCcCccccc-hhhhcCCCCcceeeecC
Q 048813 452 SKVVSLQHLDLSESDIEELP---GE-LKALVNLKCLDLEYTRNLITIP-RQLISNLSRLHVLRMFG 512 (552)
Q Consensus 452 ~~l~~L~~L~l~~~~l~~lp---~~-i~~L~~L~~L~l~~~~~l~~lP-~~~i~~l~~L~~L~l~~ 512 (552)
+.+++|++|++++|.++.+| .. +..+++|++|++++|. +...+ ...+..+++|++|++.+
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTT
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCC
Confidence 55666666666666665332 22 2355666666666664 33322 12244556666666633
No 104
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.27 E-value=3.6e-11 Score=122.61 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCcccchHHHHHHHHHHh-cc------CCCeEEEE--EcCCCCcHHHHHHHHHhhhhcc--cCCCC-eEEEEEECCccCH
Q 048813 76 EPTVIGLQSQLEQVWRCL-VE------EPAGIVGL--YGMGGVGKTTLLTHINNKFLES--TTNFN-YVIWVVVSKDLRL 143 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~--~~~f~-~~~wv~~s~~~~~ 143 (552)
+..++||++++++|.+.+ .. .....+.| +|++|+||||||+++++..... ...+. .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 356999999999999988 41 24456666 9999999999999999876211 01233 4678887677788
Q ss_pred HHHHHHHHHHcCCCCcccccccHHHHHHHHHHHhc--cceEEEEEcccccc
Q 048813 144 ENIQETIGEKIGLLNDTWKNRRIEQKALDIFRILK--EQKFVLLLDDLWQR 192 (552)
Q Consensus 144 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 192 (552)
..+...++.+++...+. ...+..+....+.+.+. +++++||+||++..
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 89999999998764321 12234455566666664 67899999999874
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=2.4e-11 Score=109.99 Aligned_cols=121 Identities=25% Similarity=0.381 Sum_probs=100.3
Q ss_pred ceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcccch-hhhcCCCCCEEecCCCc
Q 048813 411 LTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTR 489 (552)
Q Consensus 411 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 489 (552)
+++++.++.+..+|..+ ..+|++|++++|.++.+|..+..+.+|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57889999999999764 368999999999999999999999999999999999999875 58999999999999995
Q ss_pred CccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCCceEEEE
Q 048813 490 NLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 490 ~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
+..+|+..+..+++|++|++.+ |.+..+++. .+..+++|+.|+++
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~---N~l~~~~~~------------~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHG---NDISVVPEG------------AFNDLSALSHLAIG 134 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCS---SCCCBCCTT------------TTTTCTTCCEEECC
T ss_pred -cCEeCHHHhCCCCCCCEEECCC---CCCCeeChh------------hhhcCccccEEEeC
Confidence 8888876699999999999954 555443322 24556777777653
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=121.38 Aligned_cols=163 Identities=17% Similarity=0.084 Sum_probs=109.3
Q ss_pred CCcccceEEEeecCCcccCC------CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc---CC--ccc
Q 048813 383 RGWEKARRLSLMHNQITNLS------EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN---LP--VGI 451 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l~------~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~---lp--~~~ 451 (552)
..+.+++.|++++|.+.... .+..+++|+.|++.+|.+..++...+..+++|++|++++|++.. +| ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 56778888888888877521 13457788888888888888877777888888888888887654 33 233
Q ss_pred cCcCcCcEEeccCCCCcccchh----hhcCCCCCEEecCCCcCcccc-chhhhcCC---CCcceeeecCcCCCCCccccc
Q 048813 452 SKVVSLQHLDLSESDIEELPGE----LKALVNLKCLDLEYTRNLITI-PRQLISNL---SRLHVLRMFGASHNAFDEASE 523 (552)
Q Consensus 452 ~~l~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~l-P~~~i~~l---~~L~~L~l~~~~~~~~~~~~~ 523 (552)
+.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+ |+. ++.+ ++|++|++.+ |.+..+|.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~~~~~L~~L~Ls~---N~l~~lp~ 268 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCMWSSALNSLNLSF---AGLEQVPK 268 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCCCCTTCCCEECCS---SCCCSCCS
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhccCcCcCCEEECCC---CCCCchhh
Confidence 6788888888888888776653 4677888888888886 5554 654 5555 5888888844 44444433
Q ss_pred ccc-------ccCCCcchhHhhcCCCCCceEEEE
Q 048813 524 DSI-------LFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 524 ~~~-------~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
... +..+.-..+..+..+++|+.|+++
T Consensus 269 ~~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 269 GLPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCCSCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred hhcCCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 211 111111111224667788877764
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=2.4e-12 Score=140.42 Aligned_cols=115 Identities=25% Similarity=0.285 Sum_probs=102.2
Q ss_pred CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcccchhhhcCCCCCE
Q 048813 403 EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLKC 482 (552)
Q Consensus 403 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 482 (552)
.+..+.+|+.|++++|.+..+|..++ .+++|++|+|++|.++.+|..++.|.+|++|+|++|.++.+|.++++|++|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 36778899999999999999998865 79999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccc
Q 048813 483 LDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASE 523 (552)
Q Consensus 483 L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 523 (552)
|+|++|. +..+|.. ++.|++|++|++ +.|.+.+.++
T Consensus 298 L~L~~N~-l~~lp~~-~~~l~~L~~L~L---~~N~l~~~~p 333 (727)
T 4b8c_D 298 FYFFDNM-VTTLPWE-FGNLCNLQFLGV---EGNPLEKQFL 333 (727)
T ss_dssp EECCSSC-CCCCCSS-TTSCTTCCCEEC---TTSCCCSHHH
T ss_pred EECCCCC-CCccChh-hhcCCCccEEeC---CCCccCCCCh
Confidence 9999995 8899988 999999999999 4555665443
No 108
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.25 E-value=1.9e-11 Score=134.93 Aligned_cols=150 Identities=25% Similarity=0.326 Sum_probs=98.2
Q ss_pred cccceEEEeecCCccc-CC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC-cCCccccCcCcCcEEe
Q 048813 385 WEKARRLSLMHNQITN-LS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT-NLPVGISKVVSLQHLD 461 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~ 461 (552)
+++++.|++++|.+.. ++ .+..+++|+.|++.+|.+....+..+..+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 4567777777776653 22 3566677777777777666444444666777777777777776 3677777777777777
Q ss_pred ccCCCCc-ccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcC
Q 048813 462 LSESDIE-ELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLG 540 (552)
Q Consensus 462 l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 540 (552)
+++|.+. .+|..+.++++|++|++++|.....+|.. ++.+++|++|++.+| .+. +..+.++..
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N---~l~------------~~~p~~l~~ 536 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNN---SFS------------GNIPAELGD 536 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS---CCE------------EECCGGGGG
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCC---ccc------------CcCCHHHcC
Confidence 7777666 56777777777777777777644466665 677777777777443 332 233445666
Q ss_pred CCCCceEEEE
Q 048813 541 LKYLEVISFT 550 (552)
Q Consensus 541 L~~L~~L~l~ 550 (552)
+++|+.|+++
T Consensus 537 l~~L~~L~Ls 546 (768)
T 3rgz_A 537 CRSLIWLDLN 546 (768)
T ss_dssp CTTCCEEECC
T ss_pred CCCCCEEECC
Confidence 7777777654
No 109
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.25 E-value=1.3e-11 Score=120.82 Aligned_cols=123 Identities=22% Similarity=0.231 Sum_probs=53.4
Q ss_pred ccceEEEeecCCccc-CCC-C--CCCCccceeecccCCCcccCchhhcCC-----CCceEEEcCCCCCCcCC-ccccCcC
Q 048813 386 EKARRLSLMHNQITN-LSE-I--PTCPHLLTCFLNRNGLQMIPNDFFQFM-----PSLKVLNLSYSKLTNLP-VGISKVV 455 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~-l~~-~--~~~~~L~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~l~ 455 (552)
++++.|++++|.+.. ++. + ..+++|+.|++++|.+...|.. +..+ ++|++|++++|.+..+| ..++.++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 344455555554442 221 1 3444455555555544444322 2222 44555555555544443 3444555
Q ss_pred cCcEEeccCCCCcc---cchhh--hcCCCCCEEecCCCcCccc---cchhhhcCCCCcceeee
Q 048813 456 SLQHLDLSESDIEE---LPGEL--KALVNLKCLDLEYTRNLIT---IPRQLISNLSRLHVLRM 510 (552)
Q Consensus 456 ~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~~---lP~~~i~~l~~L~~L~l 510 (552)
+|++|++++|.+.. +|..+ ..+++|++|++++|. +.. +|...+..+++|++|++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEEC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEEC
Confidence 55555555544321 23333 444555555555443 332 22222334445555554
No 110
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.24 E-value=2.7e-11 Score=128.81 Aligned_cols=141 Identities=26% Similarity=0.377 Sum_probs=116.5
Q ss_pred ceEEEcCCcceeCCCcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCC
Q 048813 367 NFLVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444 (552)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l 444 (552)
..+...+.....+|..- .++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|.+
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 34555555555555422 378999999999999885 588999999999999999998777789999999999999999
Q ss_pred CcCCccccCcCcCcEEeccCCCCcccc--hhhhcCCCCCEEecCCCcCccccchhhhcCCCCc--ceeeecCcC
Q 048813 445 TNLPVGISKVVSLQHLDLSESDIEELP--GELKALVNLKCLDLEYTRNLITIPRQLISNLSRL--HVLRMFGAS 514 (552)
Q Consensus 445 ~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L--~~L~l~~~~ 514 (552)
+.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|. +...+ +..+++| ++|++.++.
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESS
T ss_pred CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccc
Confidence 999977 8999999999999999865 789999999999999985 54432 5566666 999886653
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=5.4e-11 Score=125.26 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=5.9
Q ss_pred hcCCCCCceEEE
Q 048813 538 LLGLKYLEVISF 549 (552)
Q Consensus 538 l~~L~~L~~L~l 549 (552)
+..+++|+.|++
T Consensus 226 l~~l~~L~~L~L 237 (571)
T 3cvr_A 226 ILSLDPTCTIIL 237 (571)
T ss_dssp GGGSCTTEEEEC
T ss_pred HhcCCCCCEEEe
Confidence 344555555544
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=2.4e-11 Score=109.91 Aligned_cols=122 Identities=18% Similarity=0.268 Sum_probs=100.2
Q ss_pred cceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc--ccCcCcCcEEeccCCCCccc-chhhhcCCCCCEEecC
Q 048813 410 LLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG--ISKVVSLQHLDLSESDIEEL-PGELKALVNLKCLDLE 486 (552)
Q Consensus 410 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~ 486 (552)
-++++++++.+..+|..+. .+|++|++++|.++.+|.. ++.+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 3788999999999998643 3899999999999998764 89999999999999999987 6789999999999999
Q ss_pred CCcCccccchhhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCCceEEEE
Q 048813 487 YTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 487 ~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
+|. +..+|+..++.+++|++|++ +.|.+.+++ ...+..+++|+.|+++
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L---~~N~l~~~~------------~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNL---YDNQISCVM------------PGSFEHLNSLTSLNLA 134 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEEC---CSSCCCEEC------------TTSSTTCTTCCEEECT
T ss_pred CCc-CCccCHHHhcCCCCCCEEEC---CCCcCCeeC------------HHHhhcCCCCCEEEeC
Confidence 996 78887766889999999999 455554432 2335667788877753
No 113
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.23 E-value=1e-10 Score=116.66 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
...||||+++++.|.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+.+..
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~ 65 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRK 65 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGG
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchh
Confidence 3558999999999999 765 699999999999999999999875 22 257888764
No 114
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=1.2e-11 Score=128.86 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=110.2
Q ss_pred CcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhh-cCCCCceEEEcCCCCCCcCCccccCcCcCcEE
Q 048813 384 GWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFF-QFMPSLKVLNLSYSKLTNLPVGISKVVSLQHL 460 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 460 (552)
.+++++.|++++|.+..++ .+..+++|+.|++++|.+...++..+ ..+++|++|+|++|.++.+|. ...+++|++|
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 196 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTL 196 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEE
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEE
Confidence 4578999999999988763 46778999999999999987554434 479999999999999999864 4568999999
Q ss_pred eccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 461 DLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 461 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++++|.++.+|+.+..+++|+.|++++|. +..+|.. ++.+++|+.|++.++
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA-LRFSQNLEHFDLRGN 247 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-CCCCTTCCEEECTTC
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchh-hccCCCCCEEEcCCC
Confidence 99999999999999999999999999995 8889987 899999999999654
No 115
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=3e-11 Score=131.67 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=108.5
Q ss_pred eEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEeccCCCC
Q 048813 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSESDI 467 (552)
Q Consensus 389 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l 467 (552)
+.++.+++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++|.++.+ |..++.+++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 46788888888877522 27899999999999999988899999999999999999886 67889999999999999999
Q ss_pred cccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 468 EELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 468 ~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
..+|. .++++++|++|++++|. +..+|+..++++++|++|++.++.
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSC
T ss_pred CccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCc
Confidence 99997 59999999999999995 778886559999999999996653
No 116
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.21 E-value=7.5e-11 Score=126.64 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=102.4
Q ss_pred cCCcccceEEEeecCCcccCC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC-cCCc-cccCcCcCc
Q 048813 382 VRGWEKARRLSLMHNQITNLS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT-NLPV-GISKVVSLQ 458 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~-~lp~-~~~~l~~L~ 458 (552)
+..+++++.|++++|.+..+| .+..+++|+.|++.+|.+..+++..+..+++|++|++++|.+. .+|. .++.+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 566788899999988888775 4677888899999988888776666778888888888888776 4554 478888888
Q ss_pred EEeccCCCCccc---chhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 459 HLDLSESDIEEL---PGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 459 ~L~l~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
+|++++|.+..+ |..+..+++|++|++++|. +..+++..++.+++|++|++.++.
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCC
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCc
Confidence 888888887765 5668888888888888885 555544447888888888885543
No 117
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.21 E-value=4.6e-11 Score=123.55 Aligned_cols=127 Identities=24% Similarity=0.290 Sum_probs=112.7
Q ss_pred ccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEec
Q 048813 386 EKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDL 462 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l 462 (552)
.+++.|++++|.+.... .+..+++|+.|++.+|.+..+++..+..+++|++|++++|.+..+ |..++.+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 57999999999988753 368889999999999999988877788999999999999999886 678899999999999
Q ss_pred cCCCCccc-chhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 463 SESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 463 ~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
++|.+..+ |..+..+++|++|++++|. +..+|+..+..+++|++|++.++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCC
Confidence 99999887 6789999999999999985 88898876789999999999553
No 118
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.20 E-value=6.4e-11 Score=132.06 Aligned_cols=146 Identities=20% Similarity=0.233 Sum_probs=115.3
Q ss_pred eEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCC-CCCcC-CccccCcCcCcEEeccCCC
Q 048813 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYS-KLTNL-PVGISKVVSLQHLDLSESD 466 (552)
Q Consensus 389 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~l~~l-p~~~~~l~~L~~L~l~~~~ 466 (552)
+..+.+++.+..+|. ..++++.|++++|.+..+++..|..+++|++|+|++| .+..+ |..++++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 467778888888887 5688999999999999887777899999999999999 44556 7889999999999999999
Q ss_pred Cccc-chhhhcCCCCCEEecCCCcCccccch-hhhcCCCCcceeeecCcCCCCCccccccccccCCCcchhHhhcCCCCC
Q 048813 467 IEEL-PGELKALVNLKCLDLEYTRNLITIPR-QLISNLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEELLGLKYL 544 (552)
Q Consensus 467 l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 544 (552)
+..+ |..++++++|++|++++|.....+|. ..++++++|++|++.++. +.+.+ ....+.+|++|
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~---l~~~~-----------~~~~~~~L~~L 150 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ---IRSLY-----------LHPSFGKLNSL 150 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC---CCCCC-----------CCGGGGTCSSC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc---ccccc-----------cchhHhhCCCC
Confidence 9877 78899999999999999963333443 347899999999996543 43221 11335566666
Q ss_pred ceEEEE
Q 048813 545 EVISFT 550 (552)
Q Consensus 545 ~~L~l~ 550 (552)
+.|+++
T Consensus 151 ~~L~Ls 156 (844)
T 3j0a_A 151 KSIDFS 156 (844)
T ss_dssp CEEEEE
T ss_pred CEEECC
Confidence 666654
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=1.1e-10 Score=122.83 Aligned_cols=117 Identities=28% Similarity=0.379 Sum_probs=90.9
Q ss_pred cceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCC
Q 048813 387 KARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESD 466 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 466 (552)
+++.|++++|.+..+|. .+++|+.|++++|.+..+|. .+++|++|++++|.++.+|. ++ .+|++|++++|.
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence 77788888887777766 67788888888888877775 46788888888888888887 65 789999999998
Q ss_pred CcccchhhhcCCCC-------CEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcc
Q 048813 467 IEELPGELKALVNL-------KCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDE 520 (552)
Q Consensus 467 l~~lp~~i~~L~~L-------~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~ 520 (552)
++.+|. +.. +| +.|++++|. +..+|.. +..+++|++|++ +.|.+.+
T Consensus 192 L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~-l~~l~~L~~L~L---~~N~l~~ 244 (571)
T 3cvr_A 192 LESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPEN-ILSLDPTCTIIL---EDNPLSS 244 (571)
T ss_dssp CSSCCC-CC----------CCEEEECCSSC-CCCCCGG-GGGSCTTEEEEC---CSSSCCH
T ss_pred CCchhh-HHH--hhhcccccceEEecCCCc-ceecCHH-HhcCCCCCEEEe---eCCcCCC
Confidence 888887 554 67 899999885 7888887 667999999988 4455544
No 120
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=5.5e-11 Score=105.59 Aligned_cols=106 Identities=20% Similarity=0.301 Sum_probs=86.5
Q ss_pred eEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcCcEEeccCCCC
Q 048813 389 RRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQHLDLSESDI 467 (552)
Q Consensus 389 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~l 467 (552)
+.++++++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++|+++.+|.. +..+.+|++|+|++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 56888888888776522 37888999999988888777788889999999999999888765 57888999999999998
Q ss_pred cccchh-hhcCCCCCEEecCCCcCccccch
Q 048813 468 EELPGE-LKALVNLKCLDLEYTRNLITIPR 496 (552)
Q Consensus 468 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~ 496 (552)
+.+|.. +..+++|++|++++|. +...|.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred ceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 888875 7888999999998885 555554
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.7e-10 Score=102.74 Aligned_cols=117 Identities=26% Similarity=0.409 Sum_probs=99.6
Q ss_pred CCcceeCCCcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc
Q 048813 373 GVGLVEAPDVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG 450 (552)
Q Consensus 373 ~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 450 (552)
+.....++. .-.++++.|++++|.+..++. +..+++|+.|++.+|.+..+++..+..+++|++|++++|.++.+|..
T Consensus 16 ~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 94 (177)
T 2o6r_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG 94 (177)
T ss_dssp SSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH
Confidence 333444442 234689999999999988764 57889999999999999999988888999999999999999998764
Q ss_pred -ccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcC
Q 048813 451 -ISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRN 490 (552)
Q Consensus 451 -~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 490 (552)
+..+.+|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 68999999999999999999876 47899999999999973
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.16 E-value=2.8e-10 Score=121.24 Aligned_cols=77 Identities=27% Similarity=0.341 Sum_probs=38.0
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCC
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSES 465 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 465 (552)
++++.|++++|.+..++. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+.+|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 455555555555555444 34555555555555554443 34455555555555555443 2334444444444
Q ss_pred CCcccc
Q 048813 466 DIEELP 471 (552)
Q Consensus 466 ~l~~lp 471 (552)
.++.+|
T Consensus 132 ~l~~lp 137 (622)
T 3g06_A 132 QLTSLP 137 (622)
T ss_dssp CCSCCC
T ss_pred CCCcCC
Confidence 444444
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.16 E-value=9.5e-11 Score=116.71 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=115.3
Q ss_pred EcCCcceeCC--CcCCcccceEEEeecCCccc-CC--CCCCCCccce-eecccCCCcccCchhhcCCCCceEEEcCCCCC
Q 048813 371 YAGVGLVEAP--DVRGWEKARRLSLMHNQITN-LS--EIPTCPHLLT-CFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL 444 (552)
Q Consensus 371 ~~~~~~~~~~--~~~~~~~l~~L~l~~~~l~~-l~--~~~~~~~L~~-L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l 444 (552)
.....+..++ .+.++++++.|++++|.+.. ++ .+..++++.. +.+.+|.+..+++..|..+++|++|++++|.+
T Consensus 37 Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp EESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred ccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccc
Confidence 3334444444 35677788888888887643 33 2455555543 44555667777666677777777777777766
Q ss_pred CcCCc--------------------------cccCc-CcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchh
Q 048813 445 TNLPV--------------------------GISKV-VSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQ 497 (552)
Q Consensus 445 ~~lp~--------------------------~~~~l-~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~ 497 (552)
..+|. .+..+ ..+++|++++|.++++|.......+|+.|++.+++.+..+|.+
T Consensus 117 ~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH
Confidence 54432 12222 3577888999999999988888888999999877779999988
Q ss_pred hhcCCCCcceeeecCcCCCCCcccccccc--------ccCCCcchhHhhcCCCCCceEEE
Q 048813 498 LISNLSRLHVLRMFGASHNAFDEASEDSI--------LFGGGELIVEELLGLKYLEVISF 549 (552)
Q Consensus 498 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~L~~L~~L~l 549 (552)
+++.+++|++|++ +.|.+..+|+... .....-..+..+.+|++|+.+++
T Consensus 197 ~f~~l~~L~~LdL---s~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 197 VFHGASGPVILDI---SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TTTTEECCSEEEC---TTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred HhccCcccchhhc---CCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 7899999999999 4555666655332 11111122334556677777765
No 124
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=8.6e-11 Score=114.92 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=60.4
Q ss_pred CcccceEEEeecCCccc---C---CCCCCCCccceeecccCCCcccCch---hhcCCCCceEEEcCCCCCCcC-CccccC
Q 048813 384 GWEKARRLSLMHNQITN---L---SEIPTCPHLLTCFLNRNGLQMIPND---FFQFMPSLKVLNLSYSKLTNL-PVGISK 453 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~---l---~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~l~~L~~L~l~~~~l~~l-p~~~~~ 453 (552)
.+++++.|++++|.+.. + ..+..+++|+.|++++|.+..++.. ++..+++|++|++++|.+..+ |..+..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 44555555555554322 1 1123445555555555555433321 234455555555555555554 444444
Q ss_pred c---CcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 454 V---VSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 454 l---~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
+ ++|++|++++|.++.+|..+. ++|++|++++|. +..+|. +..+++|+.|++
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~--~~~l~~L~~L~L 301 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ--PDELPEVDNLTL 301 (310)
T ss_dssp CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCC--TTSCCCCSCEEC
T ss_pred ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCch--hhhCCCccEEEC
Confidence 4 355555555555555555442 455555555553 444443 445555555555
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.15 E-value=4.8e-10 Score=119.51 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=32.9
Q ss_pred CCCCEEecCCCcCccccchhhhcCCCCcceeeecCcCCCCCcccccccc------c-cCCCcchhHhhcCCCCCceEEEE
Q 048813 478 VNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGASHNAFDEASEDSI------L-FGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 478 ~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~------~-~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
++|++|++++|. +..+| ..+++|++|++.++ .+..++.... + .+.-...+..+.++++|+.|+++
T Consensus 221 ~~L~~L~Ls~N~-L~~lp----~~l~~L~~L~Ls~N---~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLP----VLPSELKELMVSGN---RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSC-CSCCC----CCCTTCCEEECCSS---CCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCc-cCcCC----CCCCcCcEEECCCC---CCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 456666666553 55555 23456666666433 3333332100 0 11111234557788888888875
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.14 E-value=2.4e-11 Score=120.23 Aligned_cols=130 Identities=21% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCcccceEEEeecCCccc--CC-CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCC-CCCc--CCccccCcCc
Q 048813 383 RGWEKARRLSLMHNQITN--LS-EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYS-KLTN--LPVGISKVVS 456 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~--l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~l~~--lp~~~~~l~~ 456 (552)
..+++++.|++++|.+.. ++ .+..+++|+.|++.+|.+.......+..+++|++|++++| .++. +|..+..+++
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 345566666666665442 22 2345556666666666554322223445566666666665 4542 4444555556
Q ss_pred CcEEeccCC-CCcc--cchhhhcCC-CCCEEecCCCc-Cc--cccchhhhcCCCCcceeeecCc
Q 048813 457 LQHLDLSES-DIEE--LPGELKALV-NLKCLDLEYTR-NL--ITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 457 L~~L~l~~~-~l~~--lp~~i~~L~-~L~~L~l~~~~-~l--~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
|++|++++| .++. +|..+..++ +|++|++++|. .+ ..+|.. +..+++|++|++.+|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDS 232 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEECTTC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEeCCCC
Confidence 666666655 5553 444555555 56666665553 11 233432 455555555555444
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.14 E-value=3.5e-10 Score=116.57 Aligned_cols=113 Identities=22% Similarity=0.346 Sum_probs=55.3
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCC
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSES 465 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 465 (552)
++++.|++++|.+..++.. +++|+.|++++|.+..++.. .++|++|++++|.++.+| .++.+++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence 3555555555555554432 24455555555544443321 134555555555555555 3555555555555555
Q ss_pred CCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 466 DIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 466 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
.++.+|..+ .+|++|++++|. +..+|. ++.+++|++|++.
T Consensus 164 ~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 164 SLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYAD 203 (454)
T ss_dssp CCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECC
T ss_pred cCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECC
Confidence 555544322 345555555552 444442 4555555555553
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.7e-10 Score=102.33 Aligned_cols=100 Identities=24% Similarity=0.355 Sum_probs=88.9
Q ss_pred cceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCC
Q 048813 410 LLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEY 487 (552)
Q Consensus 410 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~ 487 (552)
...+++.++.+..+|..+ .++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+|.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367899999999999864 38899999999999998 66889999999999999999999976 57999999999999
Q ss_pred CcCccccchhhhcCCCCcceeeecCc
Q 048813 488 TRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 488 ~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
|. +..+|++.+..+++|++|++.++
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCC
Confidence 95 88999877899999999999553
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=1.8e-10 Score=101.86 Aligned_cols=101 Identities=19% Similarity=0.305 Sum_probs=77.5
Q ss_pred ceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCcc-ccCcCcCcEEeccCCC
Q 048813 388 ARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVG-ISKVVSLQHLDLSESD 466 (552)
Q Consensus 388 l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 466 (552)
.+.++++++.+..+|... .++++.|++++|.+..+++..|..+++|++|+|++|.++.+|.. +..+.+|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 456788888887776422 36788888888888887776677888888888888888887654 5778888888888888
Q ss_pred Ccccchh-hhcCCCCCEEecCCCc
Q 048813 467 IEELPGE-LKALVNLKCLDLEYTR 489 (552)
Q Consensus 467 l~~lp~~-i~~L~~L~~L~l~~~~ 489 (552)
++.+|.. +..+++|++|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 8887764 7778888888888875
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.13 E-value=4.1e-10 Score=116.10 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=61.1
Q ss_pred ccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCC
Q 048813 386 EKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSES 465 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 465 (552)
++++.|++++|.+..+|.+..+++|+.|++.+|.+..+|.. ..+|++|++++|.++.+| .++.+++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 35566666666655555555556666666666655554432 235555555555555555 4555555555555555
Q ss_pred CCcccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 466 DIEELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 466 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
.+..+|... .+|++|++++|. +..+|. ++.+++|++|++.
T Consensus 206 ~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 206 SLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPFLTTIYAD 245 (454)
T ss_dssp CCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECC
T ss_pred cCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCCCCEEECC
Confidence 555544321 345555555553 445553 4555555555553
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1.2e-12 Score=119.12 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=65.7
Q ss_pred CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEeccCCCCcccchhhhcCCCCCEE
Q 048813 404 IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLSESDIEELPGELKALVNLKCL 483 (552)
Q Consensus 404 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 483 (552)
+..+++|+.|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+..+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 445566666666666666655 255566666666666666666666666666666666666666665 46666666666
Q ss_pred ecCCCcCccccch-hhhcCCCCcceeeecC
Q 048813 484 DLEYTRNLITIPR-QLISNLSRLHVLRMFG 512 (552)
Q Consensus 484 ~l~~~~~l~~lP~-~~i~~l~~L~~L~l~~ 512 (552)
++++|. +..+|. ..+..+++|++|++.+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecC
Confidence 666664 555543 2356666666666643
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.12 E-value=4.5e-11 Score=118.29 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=110.8
Q ss_pred cCCcccceEEEeecCCccc--CCCCCCCCccceeecccC-CCcc--cCchhhcCCCCceEEEcCCC-CCCc--CCccccC
Q 048813 382 VRGWEKARRLSLMHNQITN--LSEIPTCPHLLTCFLNRN-GLQM--IPNDFFQFMPSLKVLNLSYS-KLTN--LPVGISK 453 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~--l~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~~l~~L~~L~l~~~-~l~~--lp~~~~~ 453 (552)
+..+++++.|++++|.+.. +..+..+++|+.|++.+| .+.. ++ ..+..+++|++|++++| .++. +|..+..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 3456788999999887653 234566888999999988 5653 33 34667889999999999 8875 6777888
Q ss_pred cC-cCcEEeccCCC--C--cccchhhhcCCCCCEEecCCCcCcc-ccchhhhcCCCCcceeeecCcCCCCCccccccccc
Q 048813 454 VV-SLQHLDLSESD--I--EELPGELKALVNLKCLDLEYTRNLI-TIPRQLISNLSRLHVLRMFGASHNAFDEASEDSIL 527 (552)
Q Consensus 454 l~-~L~~L~l~~~~--l--~~lp~~i~~L~~L~~L~l~~~~~l~-~lP~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 527 (552)
++ +|++|++++|. + ..+|..+.++++|++|++++|..+. ..+.. ++.+++|++|++.+|.. +
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~--~--------- 260 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYD--I--------- 260 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTT--C---------
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCC--C---------
Confidence 88 99999999884 4 4577778888999999999886333 44444 78889999999977752 1
Q ss_pred cCCCcchhHhhcCCCCCceEEE
Q 048813 528 FGGGELIVEELLGLKYLEVISF 549 (552)
Q Consensus 528 ~~~~~~~~~~l~~L~~L~~L~l 549 (552)
....+..+..+++|+.|++
T Consensus 261 ---~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 261 ---IPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp ---CGGGGGGGGGCTTCCEEEC
T ss_pred ---CHHHHHHHhcCCCCCEEec
Confidence 1223345666777777765
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=3.3e-10 Score=100.12 Aligned_cols=100 Identities=26% Similarity=0.386 Sum_probs=85.6
Q ss_pred ccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecC
Q 048813 409 HLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLE 486 (552)
Q Consensus 409 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~ 486 (552)
..+.+++++|.+..+|..+ .++|++|+|++|.++.+ |..+..+.+|++|++++|.++.+|.. +..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578899999998888764 47899999999999987 66789999999999999999998876 5789999999999
Q ss_pred CCcCccccchhhhcCCCCcceeeecC
Q 048813 487 YTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 487 ~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
+|. +..+|++.+..+++|++|++.+
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCC
Confidence 985 8888887688999999999954
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=5e-12 Score=115.05 Aligned_cols=127 Identities=27% Similarity=0.318 Sum_probs=108.9
Q ss_pred cCCcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEe
Q 048813 382 VRGWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLD 461 (552)
Q Consensus 382 ~~~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 461 (552)
+..+++++.|++++|.+..++.+..+++|+.|++.+|.+..+|.. +..+++|++|++++|.++.+| .++.+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 455678999999999999988888889999999999999888864 566789999999999999988 789999999999
Q ss_pred ccCCCCcccch--hhhcCCCCCEEecCCCcCcccc-c---------hhhhcCCCCcceeeec
Q 048813 462 LSESDIEELPG--ELKALVNLKCLDLEYTRNLITI-P---------RQLISNLSRLHVLRMF 511 (552)
Q Consensus 462 l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~l-P---------~~~i~~l~~L~~L~l~ 511 (552)
+++|.+..+|. .+..+++|++|++++|. +... | ...+..+++|+.|+..
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 99999998875 78999999999999996 4333 2 2347889999999843
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.02 E-value=7.7e-10 Score=110.08 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=112.4
Q ss_pred EEEcCCcceeCCCcCCcccceEEEeecCCcccCCC--CCCCCccceeecccCCC-cccCchhhcCCCCceE-EEcCCCCC
Q 048813 369 LVYAGVGLVEAPDVRGWEKARRLSLMHNQITNLSE--IPTCPHLLTCFLNRNGL-QMIPNDFFQFMPSLKV-LNLSYSKL 444 (552)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~l-~~~~~~~~~~l~~L~~-L~l~~~~l 444 (552)
+...+.....+|..- ..+++.|++++|.+..++. +..+++|+.|++++|.+ ..+|...|.++++|.. +.+.+|++
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 344444555555421 3579999999999999864 78999999999999986 4577777888888764 66778899
Q ss_pred CcC-CccccCcCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCC-CcceeeecCcCCCCCccc
Q 048813 445 TNL-PVGISKVVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLS-RLHVLRMFGASHNAFDEA 521 (552)
Q Consensus 445 ~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~-~L~~L~l~~~~~~~~~~~ 521 (552)
+.+ |..+..+++|++|++++|.+..+|.. +....++..|++.++..+..+|...+..+. .|+.|++ +.|.+..+
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L---~~N~i~~i 169 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL---NKNGIQEI 169 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC---CSSCCCEE
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc---ccccccCC
Confidence 998 56789999999999999999888753 445567778888776667777765455554 4677777 44555555
Q ss_pred ccc
Q 048813 522 SED 524 (552)
Q Consensus 522 ~~~ 524 (552)
++.
T Consensus 170 ~~~ 172 (350)
T 4ay9_X 170 HNS 172 (350)
T ss_dssp CTT
T ss_pred Chh
Confidence 543
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.99 E-value=1e-10 Score=118.25 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=91.0
Q ss_pred CCcccceEEEeecCCcccC-----C-CCCCC---------CccceeecccCCCc--ccCc--hhhcCCCCceEEEcCCCC
Q 048813 383 RGWEKARRLSLMHNQITNL-----S-EIPTC---------PHLLTCFLNRNGLQ--MIPN--DFFQFMPSLKVLNLSYSK 443 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~l-----~-~~~~~---------~~L~~L~l~~~~l~--~~~~--~~~~~l~~L~~L~l~~~~ 443 (552)
..++++++|++++|.+... + .+..+ ++|+.|++.+|.+. .++. ..+..+++|+.|++++|.
T Consensus 119 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198 (386)
T ss_dssp HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 3456677777777765421 1 11222 56777777777664 2221 234556777777777777
Q ss_pred CC------cCCccccCcCcCcEEeccCCCC-----cccchhhhcCCCCCEEecCCCcCccc-----cchhhh--cCCCCc
Q 048813 444 LT------NLPVGISKVVSLQHLDLSESDI-----EELPGELKALVNLKCLDLEYTRNLIT-----IPRQLI--SNLSRL 505 (552)
Q Consensus 444 l~------~lp~~~~~l~~L~~L~l~~~~l-----~~lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~~i--~~l~~L 505 (552)
+. -.|..+..+++|++|++++|.+ ..+|..+..+++|++|++++|. +.. +|.. + +.+++|
T Consensus 199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~-l~~~~~~~L 276 (386)
T 2ca6_A 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDA-FSKLENIGL 276 (386)
T ss_dssp CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHH-HHTCSSCCC
T ss_pred CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHH-HhhccCCCe
Confidence 76 2233666777777777777776 4567777777777777777775 433 3443 4 347777
Q ss_pred ceeeecCcCCCCCccccccccccCCCcchhHhh-cCCCCCceEEEE
Q 048813 506 HVLRMFGASHNAFDEASEDSILFGGGELIVEEL-LGLKYLEVISFT 550 (552)
Q Consensus 506 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~l~ 550 (552)
++|++.+|. +.+.. -......+ .++++|+.|+++
T Consensus 277 ~~L~L~~n~---i~~~g--------~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 277 QTLRLQYNE---IELDA--------VRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp CEEECCSSC---CBHHH--------HHHHHHHHHHHCTTCCEEECT
T ss_pred EEEECcCCc---CCHHH--------HHHHHHHHHhcCCCceEEEcc
Confidence 777775443 22100 00133444 457888888764
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.93 E-value=1.1e-09 Score=110.70 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=104.0
Q ss_pred CCcccceEEEeecCCccc-----CC-CCCCCCccceeecccCCCcccCchhh----cCC---------CCceEEEcCCCC
Q 048813 383 RGWEKARRLSLMHNQITN-----LS-EIPTCPHLLTCFLNRNGLQMIPNDFF----QFM---------PSLKVLNLSYSK 443 (552)
Q Consensus 383 ~~~~~l~~L~l~~~~l~~-----l~-~~~~~~~L~~L~l~~~~l~~~~~~~~----~~l---------~~L~~L~l~~~~ 443 (552)
..++++++|++++|.+.. ++ .+..+++|+.|++++|.+.......+ ..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456778888888887765 22 34667788888888887753322222 223 788888888888
Q ss_pred CC--cCC---ccccCcCcCcEEeccCCCCc------ccchhhhcCCCCCEEecCCCcCc-----cccchhhhcCCCCcce
Q 048813 444 LT--NLP---VGISKVVSLQHLDLSESDIE------ELPGELKALVNLKCLDLEYTRNL-----ITIPRQLISNLSRLHV 507 (552)
Q Consensus 444 l~--~lp---~~~~~l~~L~~L~l~~~~l~------~lp~~i~~L~~L~~L~l~~~~~l-----~~lP~~~i~~l~~L~~ 507 (552)
++ .+| ..+..+++|++|++++|.+. -.|..+.++++|++|++++|. + ..+|.. +..+++|++
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~-l~~~~~L~~ 248 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIA-LKSWPNLRE 248 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHH-GGGCTTCCE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHH-HccCCCcCE
Confidence 76 344 46667788888888888777 234477788888888888885 4 556765 788888888
Q ss_pred eeecCcCCCCCccccccccccCCCcchhHhhc--CCCCCceEEEE
Q 048813 508 LRMFGASHNAFDEASEDSILFGGGELIVEELL--GLKYLEVISFT 550 (552)
Q Consensus 508 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~~L~l~ 550 (552)
|++.+|. +.+.. .......+. .+++|+.|+++
T Consensus 249 L~L~~n~---i~~~~--------~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 249 LGLNDCL---LSARG--------AAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp EECTTCC---CCHHH--------HHHHHHHHHTCSSCCCCEEECC
T ss_pred EECCCCC---Cchhh--------HHHHHHHHhhccCCCeEEEECc
Confidence 8885543 32100 011234453 48999998875
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=6e-09 Score=103.46 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=80.0
Q ss_pred EEEeecC-CcccCCCCCCCCccceeeccc-CCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEEeccCCC
Q 048813 390 RLSLMHN-QITNLSEIPTCPHLLTCFLNR-NGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLDLSESD 466 (552)
Q Consensus 390 ~L~l~~~-~l~~l~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~ 466 (552)
.++.+++ .+..+|.+..+.+|+.|+|++ |.+..+++..|..+++|++|+|++|+++.+| ..|..|.+|++|+|++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 3566666 777777777778888888886 8888888777888888999999999888864 467888889999999888
Q ss_pred CcccchhhhcCCCCCEEecCCCc
Q 048813 467 IEELPGELKALVNLKCLDLEYTR 489 (552)
Q Consensus 467 l~~lp~~i~~L~~L~~L~l~~~~ 489 (552)
++.+|..+....+|+.|++.+|.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSC
T ss_pred cceeCHHHcccCCceEEEeeCCC
Confidence 88888765554458889888875
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.83 E-value=7.5e-09 Score=103.44 Aligned_cols=127 Identities=20% Similarity=0.190 Sum_probs=62.5
Q ss_pred ccceEEEeecCCcccCCC------CCC-CCccceeecccCCCcccCch----hhcCCC-CceEEEcCCCCCCcCC-c---
Q 048813 386 EKARRLSLMHNQITNLSE------IPT-CPHLLTCFLNRNGLQMIPND----FFQFMP-SLKVLNLSYSKLTNLP-V--- 449 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~~------~~~-~~~L~~L~l~~~~l~~~~~~----~~~~l~-~L~~L~l~~~~l~~lp-~--- 449 (552)
++++.|++++|.+...+. +.. +++|+.|++++|.+...... .+..+. +|++|++++|.++..+ .
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 456666666665544321 122 24566666666655421111 122233 5666666666655432 1
Q ss_pred -cccCc-CcCcEEeccCCCCcc-----cchhhhcC-CCCCEEecCCCcCccccch----hhhcCCCCcceeeecCc
Q 048813 450 -GISKV-VSLQHLDLSESDIEE-----LPGELKAL-VNLKCLDLEYTRNLITIPR----QLISNLSRLHVLRMFGA 513 (552)
Q Consensus 450 -~~~~l-~~L~~L~l~~~~l~~-----lp~~i~~L-~~L~~L~l~~~~~l~~lP~----~~i~~l~~L~~L~l~~~ 513 (552)
.+..+ .+|++|++++|.+.. +|..+..+ ++|++|++++|. +...+. ..+..+++|++|++.+|
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 22233 366666666666554 55555543 356666666663 444332 11345566666666444
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.81 E-value=9.8e-09 Score=103.38 Aligned_cols=116 Identities=13% Similarity=0.166 Sum_probs=83.3
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIG 151 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 151 (552)
+..|+||+++++.+.+.+.. +....+.|+|++|+||||||+++++........-..++|+.+....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 35699999999999998863 45678999999999999999999987621111023567888776667778888888
Q ss_pred HHcCCCCcccccccHHHHHHHHHHHhc--cceEEEEEcccccc
Q 048813 152 EKIGLLNDTWKNRRIEQKALDIFRILK--EQKFVLLLDDLWQR 192 (552)
Q Consensus 152 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 192 (552)
..++..... ...+..+....+.+.+. +++.+||+|+++..
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence 887654321 22234555555666554 34899999998763
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.3e-08 Score=101.11 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=84.9
Q ss_pred ceeecccC-CCcccCchhhcCCCCceEEEcCC-CCCCcCC-ccccCcCcCcEEeccCCCCcccch-hhhcCCCCCEEecC
Q 048813 411 LTCFLNRN-GLQMIPNDFFQFMPSLKVLNLSY-SKLTNLP-VGISKVVSLQHLDLSESDIEELPG-ELKALVNLKCLDLE 486 (552)
Q Consensus 411 ~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~ 486 (552)
..+++.++ .+..+|. +..+++|++|+|++ |.++.+| ..|+.|.+|++|+|++|.++.+|+ .+.+|++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34577777 8989988 78899999999996 9999986 579999999999999999998875 57999999999999
Q ss_pred CCcCccccchhhhcCCCCcceeeecCc
Q 048813 487 YTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 487 ~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
+|. +..+|+..+..++ |+.|++.++
T Consensus 89 ~N~-l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SSC-CSCCCSTTTCSCC-CCEEECCSS
T ss_pred CCc-cceeCHHHcccCC-ceEEEeeCC
Confidence 995 8899987566665 999999553
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.80 E-value=9.7e-09 Score=103.47 Aligned_cols=116 Identities=13% Similarity=0.011 Sum_probs=83.3
Q ss_pred CcccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcc----cCC-CCeEEEEEECCcc-CHHHH
Q 048813 77 PTVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLES----TTN-FNYVIWVVVSKDL-RLENI 146 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~~-f~~~~wv~~s~~~-~~~~~ 146 (552)
..++||+++++++.+.+.. +..+.+.|+|++|+||||+|+++++..... .+. ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5689999999999877753 446789999999999999999999875211 011 3467888877666 77888
Q ss_pred HHHHHHHcCCCCcccccccHHHHHHHHHHHhccceEEEEEcccccc
Q 048813 147 QETIGEKIGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 147 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
...++.++.............+....+.+.+..++.+||+||++..
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l 145 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTL 145 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHH
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHh
Confidence 8888887721111112333455666777778776669999999764
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.79 E-value=5.9e-08 Score=97.81 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=83.5
Q ss_pred CcccchHHHHHHHHHHhcc----CCCe--EEEEEcCCCCcHHHHHHHHHhhhhcccCC-CCeEEEEEECCccCHHHHHHH
Q 048813 77 PTVIGLQSQLEQVWRCLVE----EPAG--IVGLYGMGGVGKTTLLTHINNKFLESTTN-FNYVIWVVVSKDLRLENIQET 149 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLA~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~ 149 (552)
+.++||+++++++...+.. +... .+.|+|++|+||||||+++++.. ... -..++|+.++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5689999999999988864 3334 89999999999999999999886 232 235678888887788889999
Q ss_pred HHHHcCCCCcccccccHHHHHHHHHHHhc--cceEEEEEcccccc
Q 048813 150 IGEKIGLLNDTWKNRRIEQKALDIFRILK--EQKFVLLLDDLWQR 192 (552)
Q Consensus 150 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~ 192 (552)
++..++...+. ......+....+...+. +++.+||+|+++..
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 99988754321 22334555555555554 56789999999764
No 144
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.78 E-value=2.6e-08 Score=100.36 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=85.3
Q ss_pred CcccchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhhhccc---CCCCeEEEEEECCccCHHHHHHH
Q 048813 77 PTVIGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKFLEST---TNFNYVIWVVVSKDLRLENIQET 149 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~ 149 (552)
..++||+++++++..++.. +..+.+.|+|++|+||||+|+++++...... +.-...+|+++....+...+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6689999999999998843 4567899999999999999999998752110 11235678888888888889999
Q ss_pred HHHHcCCCCcccccccHHHHHHHHHHHh--ccceEEEEEcccccc
Q 048813 150 IGEKIGLLNDTWKNRRIEQKALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 150 i~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
++.+++...+. ...+..+....+.+.+ .+++.+||+||++..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l 142 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFL 142 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHH
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhh
Confidence 99998754322 2333455566666666 346889999999764
No 145
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.78 E-value=7.8e-09 Score=103.31 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=80.1
Q ss_pred cceEEEeecCCcccCC--CCCC-----CCccceeecccCCCcccCchh----hcCC-CCceEEEcCCCCCCcCCc-c---
Q 048813 387 KARRLSLMHNQITNLS--EIPT-----CPHLLTCFLNRNGLQMIPNDF----FQFM-PSLKVLNLSYSKLTNLPV-G--- 450 (552)
Q Consensus 387 ~l~~L~l~~~~l~~l~--~~~~-----~~~L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~l~~~~l~~lp~-~--- 450 (552)
+++.|++++|.+.... .+.. +++|+.|++++|.+...+... +..+ ++|++|++++|.++..+. .
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 5666666666665432 1222 256667777766665444331 2223 567777777776665432 2
Q ss_pred -ccC-cCcCcEEeccCCCCc-----ccchhhhcCC-CCCEEecCCCcCccccchh----hhcCC-CCcceeeecCcCCCC
Q 048813 451 -ISK-VVSLQHLDLSESDIE-----ELPGELKALV-NLKCLDLEYTRNLITIPRQ----LISNL-SRLHVLRMFGASHNA 517 (552)
Q Consensus 451 -~~~-l~~L~~L~l~~~~l~-----~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~----~i~~l-~~L~~L~l~~~~~~~ 517 (552)
+.. ..+|++|++++|.+. .++..+..+. +|++|++++|. +...+.. .+..+ ++|++|++.++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--- 207 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL--- 207 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC---
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC---
Confidence 222 246777777776665 3445555554 67777777664 4433321 13334 467777774432
Q ss_pred CccccccccccCCCcchhHhhcCC-CCCceEEEE
Q 048813 518 FDEASEDSILFGGGELIVEELLGL-KYLEVISFT 550 (552)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~ 550 (552)
+.+. ........+..+ ++|+.|+++
T Consensus 208 i~~~--------~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 208 LGLK--------SYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp GGGS--------CHHHHHHHHHHSCTTCCEEECC
T ss_pred CChh--------HHHHHHHHHhcCCCCceEEECc
Confidence 2210 011123445554 488888775
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.63 E-value=9.7e-09 Score=106.14 Aligned_cols=129 Identities=19% Similarity=0.158 Sum_probs=84.2
Q ss_pred CcccceEEEeecCCcccC------CC-CCCCCccceeecccCCCcc-----cCchhhcCCCCceEEEcCCCCCCcC-Ccc
Q 048813 384 GWEKARRLSLMHNQITNL------SE-IPTCPHLLTCFLNRNGLQM-----IPNDFFQFMPSLKVLNLSYSKLTNL-PVG 450 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l------~~-~~~~~~L~~L~l~~~~l~~-----~~~~~~~~l~~L~~L~l~~~~l~~l-p~~ 450 (552)
.+++++.|++++|.+... +. ...+++|+.|++.+|.+.. ++.. +..+++|+.|++++|.+... +..
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCCchHHHHH
Confidence 456788888888876542 11 2357788888888887765 3433 55688888888888887632 222
Q ss_pred cc-----CcCcCcEEeccCCCCcc-----cchhhhcCCCCCEEecCCCcCccccchhhhc-----CCCCcceeeecCcC
Q 048813 451 IS-----KVVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTRNLITIPRQLIS-----NLSRLHVLRMFGAS 514 (552)
Q Consensus 451 ~~-----~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~-----~l~~L~~L~l~~~~ 514 (552)
+. ..++|++|++++|.++. +|..+..+++|++|++++|. +.......+. ..++|++|++.+|.
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 22 22578888888887763 46667777888888888874 4433211122 25678888886553
No 147
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.61 E-value=9.5e-08 Score=87.97 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=40.7
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|+++.++.+.+++.......+.|+|.+|+|||++|+.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999987665569999999999999999998875
No 148
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.56 E-value=1.6e-08 Score=104.57 Aligned_cols=154 Identities=21% Similarity=0.153 Sum_probs=90.0
Q ss_pred cccceEEEeecCCcccCC--CC-----CCCCccceeecccCCCcccC----chhhcCCCCceEEEcCCCCCCcC------
Q 048813 385 WEKARRLSLMHNQITNLS--EI-----PTCPHLLTCFLNRNGLQMIP----NDFFQFMPSLKVLNLSYSKLTNL------ 447 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~l~--~~-----~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~l~~l------ 447 (552)
+++++.|++++|.+.... .+ ...++|+.|++.+|.+.... ...+..+++|+.|++++|.+...
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence 456777777777654321 11 12346777777777665421 22345667777777777766542
Q ss_pred CccccCcCcCcEEeccCCCCcc-----cchhhhcCCCCCEEecCCCcCcccc-----chhhhcCCCCcceeeecCcCCCC
Q 048813 448 PVGISKVVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTRNLITI-----PRQLISNLSRLHVLRMFGASHNA 517 (552)
Q Consensus 448 p~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~l-----P~~~i~~l~~L~~L~l~~~~~~~ 517 (552)
+..+..+.+|++|++++|.++. +|..+.++++|++|++++|. +... +.......++|++|++.+|..
T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-- 325 (461)
T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSF-- 325 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC--
T ss_pred HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCC--
Confidence 2222346777777777777765 66667777777777777774 4322 221112335777777765532
Q ss_pred CccccccccccCCCcchhHhhcCCCCCceEEEE
Q 048813 518 FDEASEDSILFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
.+.. .......+..+++|+.|+++
T Consensus 326 -~~~~--------~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 326 -TAAC--------CSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp -BGGG--------HHHHHHHHHHCSSCCEEECC
T ss_pred -chHH--------HHHHHHHHhhCCCccEEEcc
Confidence 2100 11234556778999999875
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.56 E-value=1.9e-07 Score=87.13 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=40.2
Q ss_pred CcccchHHHHHHHHHHhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEP-AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++||+..++.+...+..+. ...+.|+|++|+||||+|+++++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999987653 3589999999999999999999876
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=3.2e-07 Score=90.18 Aligned_cols=56 Identities=27% Similarity=0.337 Sum_probs=34.0
Q ss_pred cCcCcEEeccCCCCcccchh-hhcCCCCCEEecCCCcCccccchhhhcCCCCcc-eeeec
Q 048813 454 VVSLQHLDLSESDIEELPGE-LKALVNLKCLDLEYTRNLITIPRQLISNLSRLH-VLRMF 511 (552)
Q Consensus 454 l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~-~L~l~ 511 (552)
+.+|+.|++++|+++++|+. +..+.+|+.+++.++ +..+++.++..+++|+ .+.+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc
Confidence 44566666666666666543 556666666666654 5566665566666666 66653
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.45 E-value=8.4e-07 Score=85.51 Aligned_cols=113 Identities=10% Similarity=0.049 Sum_probs=76.2
Q ss_pred ccchHHHHHHHHHHhc----cCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCC--C--CeEEEEEECCccCHHHHHHHH
Q 048813 79 VIGLQSQLEQVWRCLV----EEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTN--F--NYVIWVVVSKDLRLENIQETI 150 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~--f--~~~~wv~~s~~~~~~~~~~~i 150 (552)
+.|||+++++|...|. .+....+.|+|++|+|||++|+++++........ . -..+++++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 6799999999987775 3567889999999999999999999987321111 1 135667777777888899999
Q ss_pred HHHcCCCCcccccccHHHHHHHHHHHh---ccceEEEEEccccccc
Q 048813 151 GEKIGLLNDTWKNRRIEQKALDIFRIL---KEQKFVLLLDDLWQRV 193 (552)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~ 193 (552)
++++..... ......+....+...+ .++.++++||+++...
T Consensus 102 ~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 102 WFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 999854321 1111122223333332 4567999999986653
No 152
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.43 E-value=1.2e-07 Score=101.15 Aligned_cols=129 Identities=13% Similarity=0.033 Sum_probs=71.2
Q ss_pred CcccceEEEeecCCcccCC------CCCCCCccceeecccCCCcccC----chhhcCCCCceEEEcCCCCCCcCCccccC
Q 048813 384 GWEKARRLSLMHNQITNLS------EIPTCPHLLTCFLNRNGLQMIP----NDFFQFMPSLKVLNLSYSKLTNLPVGISK 453 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~------~~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~l~~lp~~~~~ 453 (552)
.+++++.|++++|.+.... ....+++|+.|++.+|.+..+. ...+..+++|+.|++++|.+..+|..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 4456777777777654321 1234567777777777664222 12244567777777777777777777777
Q ss_pred cCcCcEEeccCCCC----cccchhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCcC
Q 048813 454 VVSLQHLDLSESDI----EELPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGAS 514 (552)
Q Consensus 454 l~~L~~L~l~~~~l----~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~~ 514 (552)
+++|+.|++++... ...+..+..+++|+.|+++++. ...+|.. +..+++|++|++.+|.
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCc
Confidence 77777777754211 1222334444444444444432 3344442 4555566666665443
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=7e-07 Score=87.75 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCcCCc-cccCcCcCcEEeccCCCCcccch-hhhcCCCCC-EEecCCCcCccccchhhhcCCCCcce
Q 048813 431 MPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDLSESDIEELPG-ELKALVNLK-CLDLEYTRNLITIPRQLISNLSRLHV 507 (552)
Q Consensus 431 l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~-~L~l~~~~~l~~lP~~~i~~l~~L~~ 507 (552)
+++|+.|++++|+++.+|. .|..+.+|+.|++.++ +..+++ .+.++.+|+ .+++.+ .+..+++..+..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 6789999999999999865 6899999999999987 888875 488999999 999987 478999888999999999
Q ss_pred eeecC
Q 048813 508 LRMFG 512 (552)
Q Consensus 508 L~l~~ 512 (552)
|++.+
T Consensus 302 l~l~~ 306 (329)
T 3sb4_A 302 VLATG 306 (329)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 99843
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=7.2e-08 Score=96.30 Aligned_cols=126 Identities=20% Similarity=0.223 Sum_probs=83.2
Q ss_pred ccceEEEeecCCcccC--CCC-CCCCccceeecccCCCcccCchhh-----cCCCCceEEEcCCCCCCc-----CCcccc
Q 048813 386 EKARRLSLMHNQITNL--SEI-PTCPHLLTCFLNRNGLQMIPNDFF-----QFMPSLKVLNLSYSKLTN-----LPVGIS 452 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l--~~~-~~~~~L~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~l~~~~l~~-----lp~~~~ 452 (552)
.+++.|++++|.+... ..+ ..+++|+.|++++|.+.......+ ...++|+.|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5788888888876531 111 234578888888887754332222 245678888888887764 455566
Q ss_pred CcCcCcEEeccCCCCcc-----cchhhhcCCCCCEEecCCCcCccc-----cchhhhcCCCCcceeeecCc
Q 048813 453 KVVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTRNLIT-----IPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 453 ~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~~i~~l~~L~~L~l~~~ 513 (552)
.+++|++|+|++|.+.. ++..+...++|++|++++|. +.. ++.. +...++|++|++.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~-L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARA-AREHPSLELLHLYFN 249 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHH-HHHCSSCCEEECTTS
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHH-HHhCCCCCEEeccCC
Confidence 77788888888887763 45566777788888888885 443 2222 456678888888544
No 155
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.39 E-value=1.4e-07 Score=100.72 Aligned_cols=126 Identities=19% Similarity=0.169 Sum_probs=87.4
Q ss_pred CcccceEEEeecCCcccCC-----C-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCC----CcCCccccC
Q 048813 384 GWEKARRLSLMHNQITNLS-----E-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKL----TNLPVGISK 453 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~-----~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l----~~lp~~~~~ 453 (552)
.+++++.|++++|.+..+. . +..+++|+.|.+.+|.+..++. .+..+++|+.|+++++.. ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 4578999999999886332 1 3568999999999998887774 477889999999985422 233456666
Q ss_pred cCcCcEEeccCCCCcccchhhhcCCCCCEEecCCCcCccc-cchhhhcCCCCcceeeec
Q 048813 454 VVSLQHLDLSESDIEELPGELKALVNLKCLDLEYTRNLIT-IPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 454 l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~~i~~l~~L~~L~l~ 511 (552)
+.+|+.|+++++....+|..+..+++|++|++++|. +.. .+...+..+++|++|++.
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 777777777776666677666777777777777775 321 111235667777777664
No 156
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.37 E-value=1.4e-06 Score=77.93 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=41.4
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++||+++++++.+.+.......+.|+|.+|+|||++|+++++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999987766788999999999999999998875
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=9.6e-08 Score=95.41 Aligned_cols=104 Identities=20% Similarity=0.215 Sum_probs=51.6
Q ss_pred ccceEEEeecCCcccCC--C----C-CCCCccceeecccCCCcccCc----hhhcCCCCceEEEcCCCCCCc-----CCc
Q 048813 386 EKARRLSLMHNQITNLS--E----I-PTCPHLLTCFLNRNGLQMIPN----DFFQFMPSLKVLNLSYSKLTN-----LPV 449 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l~--~----~-~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~~l~~-----lp~ 449 (552)
.+++.|++++|.+.... . + ...++|+.|++++|.+..... ..+...++|++|+|++|.+.. ++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 34566666666553311 0 0 223456666666665533111 112345556666666665542 234
Q ss_pred cccCcCcCcEEeccCCCCcc-----cchhhhcCCCCCEEecCCCc
Q 048813 450 GISKVVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTR 489 (552)
Q Consensus 450 ~~~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 489 (552)
.+....+|++|+|++|.+.. ++..+...++|++|++++|.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 44455556666666665542 33344445566666666553
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=4.2e-07 Score=88.96 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=40.9
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|++..++.+.+.+..+..+.+.|+|++|+||||+|+.+++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4588999999999999987766569999999999999999999875
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.27 E-value=3.7e-06 Score=74.74 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++||+.+++.+.+.+.......+.|+|.+|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999987766788999999999999999998875
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.24 E-value=8.9e-06 Score=79.53 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=47.6
Q ss_pred CCcccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHH
Q 048813 76 EPTVIGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQE 148 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 148 (552)
...++|++..++++...+.. .....+.|+|++|+|||++|+++++.. .. ...++..+......++..
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHH
Confidence 35589999999999887752 344678999999999999999998875 22 234555444444444443
No 161
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.16 E-value=5.6e-07 Score=96.07 Aligned_cols=13 Identities=15% Similarity=-0.016 Sum_probs=9.5
Q ss_pred hcCCCCCceEEEE
Q 048813 538 LLGLKYLEVISFT 550 (552)
Q Consensus 538 l~~L~~L~~L~l~ 550 (552)
+.++++|+.|+++
T Consensus 310 ~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 310 LCQCPKLQRLWVL 322 (594)
T ss_dssp HTTCTTCCEEEEE
T ss_pred HhcCCCcCEEeCc
Confidence 4577888888775
No 162
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.13 E-value=9.6e-07 Score=94.21 Aligned_cols=148 Identities=19% Similarity=0.220 Sum_probs=85.1
Q ss_pred CcccceEEEeecCCccc-----CCCC-CCCCccceeecccCCCcccCc----hhhcCCCCceEEEcCCC-CCCcCCcccc
Q 048813 384 GWEKARRLSLMHNQITN-----LSEI-PTCPHLLTCFLNRNGLQMIPN----DFFQFMPSLKVLNLSYS-KLTNLPVGIS 452 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~-----l~~~-~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~-~l~~lp~~~~ 452 (552)
.+++++.|++++|.+.. ++.+ ..+++|+.|++.+|. ..++. .+...+++|++|++++| .+..+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 34577777777776443 2222 356677777777765 22221 12234577777787777 4444565666
Q ss_pred CcCcCcEEeccCC-------------------------------CCcccchhhhcCCCCCEEecCCCcCccc-cchhhhc
Q 048813 453 KVVSLQHLDLSES-------------------------------DIEELPGELKALVNLKCLDLEYTRNLIT-IPRQLIS 500 (552)
Q Consensus 453 ~l~~L~~L~l~~~-------------------------------~l~~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~~i~ 500 (552)
.+++|+.|++..+ ....+|..+..+++|++|++++|. +.. .+...+.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~ 311 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLC 311 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHT
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHh
Confidence 6666666664332 112344444466778888888775 332 1222356
Q ss_pred CCCCcceeeecCcCCCCCccccccccccCCCcchhHhh-cCCCCCceEEE
Q 048813 501 NLSRLHVLRMFGASHNAFDEASEDSILFGGGELIVEEL-LGLKYLEVISF 549 (552)
Q Consensus 501 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~l 549 (552)
.+++|++|++.+|. ....+..+ ..+++|+.|++
T Consensus 312 ~~~~L~~L~l~~~~----------------~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 312 QCPKLQRLWVLDYI----------------EDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp TCTTCCEEEEEGGG----------------HHHHHHHHHHHCTTCCEEEE
T ss_pred cCCCcCEEeCcCcc----------------CHHHHHHHHHhCCCCCEEEE
Confidence 77888888886651 11122222 35888999887
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=2e-06 Score=84.23 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=41.3
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|++..++.+.+++..+....+.|+|++|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999999988766679999999999999999999875
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=2e-06 Score=80.90 Aligned_cols=83 Identities=25% Similarity=0.257 Sum_probs=64.4
Q ss_pred cCCCCceEEEcCCCCCCcCC---ccccCcCcCcEEeccCCCCcccchhhhcCC--CCCEEecCCCcCccccch------h
Q 048813 429 QFMPSLKVLNLSYSKLTNLP---VGISKVVSLQHLDLSESDIEELPGELKALV--NLKCLDLEYTRNLITIPR------Q 497 (552)
Q Consensus 429 ~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~lP~------~ 497 (552)
..+++|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+. .+..+. +|++|++++|.....+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46889999999999888754 56678999999999999998773 455555 899999999975445552 3
Q ss_pred hhcCCCCcceeeecC
Q 048813 498 LISNLSRLHVLRMFG 512 (552)
Q Consensus 498 ~i~~l~~L~~L~l~~ 512 (552)
++..+++|+.|+...
T Consensus 246 il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 246 IRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHCTTCCEESSCB
T ss_pred HHHHCcccCeECCcC
Confidence 477889999888643
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.83 E-value=6.2e-05 Score=71.99 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=39.4
Q ss_pred CCcccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.++.+++|.+.+.. ...+-+.|+|++|+|||+||+++++..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34589999999999887742 345679999999999999999999875
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.79 E-value=2.8e-05 Score=76.89 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=80.2
Q ss_pred CcccceEEEeecCCcccCCCCCCCCccceeecccCCCcccCchhh--cCCCCceEEEcCCC--------CCCcCCccc--
Q 048813 384 GWEKARRLSLMHNQITNLSEIPTCPHLLTCFLNRNGLQMIPNDFF--QFMPSLKVLNLSYS--------KLTNLPVGI-- 451 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~--------~l~~lp~~~-- 451 (552)
.+++++.|++.++.-..++.+ .+++|+.|.+..+.+..-....+ ..+++|+.|+|+.+ .+..+...+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred cCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 456889999988742234443 37889999988876643221112 26888999988531 122232222
Q ss_pred cCcCcCcEEeccCCCCcc-cchhhh---cCCCCCEEecCCCcCccc-----cchhhhcCCCCcceeeecCc
Q 048813 452 SKVVSLQHLDLSESDIEE-LPGELK---ALVNLKCLDLEYTRNLIT-----IPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 452 ~~l~~L~~L~l~~~~l~~-lp~~i~---~L~~L~~L~l~~~~~l~~-----lP~~~i~~l~~L~~L~l~~~ 513 (552)
..+++|++|++++|.+.. .+..+. .+++|++|+|+.|. +.. ++.+ +.++++|+.|++.+|
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYN 317 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSB
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCC
Confidence 357889999998887653 222332 46789999998874 443 3333 456788999988554
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.79 E-value=1.8e-05 Score=77.00 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=40.5
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|++..++.+.+.+..+....+.|+|++|+|||++|+.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4488999999999998887766569999999999999999998875
No 168
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.77 E-value=8.8e-05 Score=69.87 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=37.3
Q ss_pred CCcccchHHHHHHHHHHhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLV---E---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.++.++++.+.+. . ...+-+.|+|++|+|||++|+++++..
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3558899999888877653 1 233568899999999999999999876
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.76 E-value=5.7e-05 Score=75.30 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHhccCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEP-AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|++..++.+.+.+..+. ...+.|+|++|+||||+|+.+++..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999987654 3578899999999999999998875
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.70 E-value=8e-05 Score=67.15 Aligned_cols=51 Identities=29% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccC----CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEE
Q 048813 84 SQLEQVWRCLVEE----PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVV 137 (552)
Q Consensus 84 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~ 137 (552)
..++.+.+++... ....+.|+|.+|+|||+||+++++.. ......++|+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL---AKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH---HTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEh
Confidence 3445555555433 12789999999999999999999886 233345566654
No 171
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=3.6e-05 Score=67.04 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=54.6
Q ss_pred CceEEEcCCCCCCcC-CccccCcCcCcEEeccCC-CCcccc-hhhhcC----CCCCEEecCCCcCccccchhhhcCCCCc
Q 048813 433 SLKVLNLSYSKLTNL-PVGISKVVSLQHLDLSES-DIEELP-GELKAL----VNLKCLDLEYTRNLITIPRQLISNLSRL 505 (552)
Q Consensus 433 ~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~-~l~~lp-~~i~~L----~~L~~L~l~~~~~l~~lP~~~i~~l~~L 505 (552)
.|+.||+++|.++.. -..+..+++|+.|+|++| .++.-- ..+..+ ++|++|++++|.++..---..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 577778887776542 235677888888888888 455311 234443 3688888888875543221226778888
Q ss_pred ceeeecCcCC
Q 048813 506 HVLRMFGASH 515 (552)
Q Consensus 506 ~~L~l~~~~~ 515 (552)
++|++.+|..
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 8888888864
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.66 E-value=0.00014 Score=70.06 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+++++..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999887632 235689999999999999999998875
No 173
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=4.9e-05 Score=67.60 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=63.9
Q ss_pred CCCCccceeecccC-CCccc----CchhhcCCCCceEEEcCCCCCCc-----CCccccCcCcCcEEeccCCCCcc-----
Q 048813 405 PTCPHLLTCFLNRN-GLQMI----PNDFFQFMPSLKVLNLSYSKLTN-----LPVGISKVVSLQHLDLSESDIEE----- 469 (552)
Q Consensus 405 ~~~~~L~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~l~~----- 469 (552)
...++|+.|++.+| .+..- ....+...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34556666666666 55421 11123456677777777777653 34445555677788887777763
Q ss_pred cchhhhcCCCCCEEec--CCCcCccc-----cchhhhcCCCCcceeeecCc
Q 048813 470 LPGELKALVNLKCLDL--EYTRNLIT-----IPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 470 lp~~i~~L~~L~~L~l--~~~~~l~~-----lP~~~i~~l~~L~~L~l~~~ 513 (552)
+...+...++|++|++ ++|. +.. +... +...++|++|++.++
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANM-LEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHH-HHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHH-HHhCCCcCEEeccCC
Confidence 4556666677888888 5564 332 2222 455677777777443
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.61 E-value=9.1e-05 Score=64.48 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=60.8
Q ss_pred CcCcEEeccCCCCccc-chhhhcCCCCCEEecCCCcCccccchhhhcCC----CCcceeeecCcCCCCCccccccccccC
Q 048813 455 VSLQHLDLSESDIEEL-PGELKALVNLKCLDLEYTRNLITIPRQLISNL----SRLHVLRMFGASHNAFDEASEDSILFG 529 (552)
Q Consensus 455 ~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~ 529 (552)
..|+.|++++|.++.. -..+..+++|++|+|++|..+..---..+..+ ++|++|++.+|.. +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~--I----------- 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN--V----------- 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT--C-----------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc--C-----------
Confidence 5899999999987642 24577899999999999975543222225554 3799999999864 2
Q ss_pred CCcchhHhhcCCCCCceEEEE
Q 048813 530 GGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 530 ~~~~~~~~l~~L~~L~~L~l~ 550 (552)
+-..+..|.++++|+.|+|+
T Consensus 128 -TD~Gl~~L~~~~~L~~L~L~ 147 (176)
T 3e4g_A 128 -TDKGIIALHHFRNLKYLFLS 147 (176)
T ss_dssp -CHHHHHHGGGCTTCCEEEEE
T ss_pred -CHHHHHHHhcCCCCCEEECC
Confidence 23456778889999999885
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.60 E-value=5.1e-05 Score=73.50 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHHhc---------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV---------------EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|.+..++.|.+.+. ......+.|+|.+|+|||++|+++++..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999998887653 2344579999999999999999988876
No 176
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=7.4e-05 Score=70.11 Aligned_cols=77 Identities=29% Similarity=0.349 Sum_probs=53.0
Q ss_pred CccceeecccCCCcccCc--hhhcCCCCceEEEcCCCCCCcCCccccCcC--cCcEEeccCCCCcc-cc-------hhhh
Q 048813 408 PHLLTCFLNRNGLQMIPN--DFFQFMPSLKVLNLSYSKLTNLPVGISKVV--SLQHLDLSESDIEE-LP-------GELK 475 (552)
Q Consensus 408 ~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~l~~-lp-------~~i~ 475 (552)
++|+.|+|++|.+..++. ..+..+++|+.|+|++|.++.+. .+..+. +|++|+|++|.+.. +| ..+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 345555555555544332 33567888999999999888763 344444 89999999998763 44 2367
Q ss_pred cCCCCCEEec
Q 048813 476 ALVNLKCLDL 485 (552)
Q Consensus 476 ~L~~L~~L~l 485 (552)
.+++|+.||-
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 8999999984
No 177
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=5.7e-05 Score=67.14 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=81.0
Q ss_pred hhcCCCCceEEEcCCC-CCCc-----CCccccCcCcCcEEeccCCCCcc-----cchhhhcCCCCCEEecCCCcCccc--
Q 048813 427 FFQFMPSLKVLNLSYS-KLTN-----LPVGISKVVSLQHLDLSESDIEE-----LPGELKALVNLKCLDLEYTRNLIT-- 493 (552)
Q Consensus 427 ~~~~l~~L~~L~l~~~-~l~~-----lp~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~-- 493 (552)
.+...+.|+.|+|++| .+.. +...+...++|++|+|++|.+.. +...+...++|++|++++|. +..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 4567889999999999 8863 45667778899999999998873 55667777899999999995 543
Q ss_pred ---cchhhhcCCCCcceeee--cCcCCCCCccccccccccCCCcchhHhhcCCCCCceEEEEE
Q 048813 494 ---IPRQLISNLSRLHVLRM--FGASHNAFDEASEDSILFGGGELIVEELLGLKYLEVISFTL 551 (552)
Q Consensus 494 ---lP~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 551 (552)
+... +...++|++|++ .++. +.+-. .....+.+...+.|+.|+++.
T Consensus 110 ~~~l~~~-L~~n~~L~~L~L~~~~N~---i~~~g--------~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 110 ILALVEA-LQSNTSLIELRIDNQSQP---LGNNV--------EMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHG-GGGCSSCCEEECCCCSSC---CCHHH--------HHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHH-HHhCCCceEEEecCCCCC---CCHHH--------HHHHHHHHHhCCCcCEEeccC
Confidence 3433 677889999999 4333 32100 112344566678899988764
No 178
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.59 E-value=0.00033 Score=68.10 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++.|.+.+.. ...+-|.++|++|+|||+||+++++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4588999999999876631 234678999999999999999999874
No 179
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.58 E-value=9.3e-05 Score=65.37 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 82 LQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 82 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....++.+.+.+.+ .....+.|+|++|+||||||+++++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555555555543 235789999999999999999999886
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=0.00012 Score=76.27 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhcc-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-----------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999864 134789999999999999999999875
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.57 E-value=0.00037 Score=66.01 Aligned_cols=46 Identities=24% Similarity=0.176 Sum_probs=34.6
Q ss_pred CcccchHHHHHHHHHH-------hc---cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRC-------LV---EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~-------L~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++++... +. ......+.|+|.+|+|||++|+++++..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3467887776666652 32 2345678999999999999999999875
No 182
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.54 E-value=0.00028 Score=68.00 Aligned_cols=46 Identities=28% Similarity=0.342 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.+++|.+.+.. ...+.|.|+|++|+|||+||+++++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4588999999999877642 345679999999999999999999875
No 183
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.53 E-value=0.00045 Score=69.40 Aligned_cols=127 Identities=14% Similarity=0.141 Sum_probs=67.7
Q ss_pred CcCCcccceEEEeecCCcccCCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCC------------------
Q 048813 381 DVRGWEKARRLSLMHNQITNLSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSY------------------ 441 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~------------------ 441 (552)
.+.++.+|+.+.+..|.+..++. ...+.+|+.+.+..+ +..++...|..+.+|+.+++..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTV 253 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEE
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEE
Confidence 34455666666666655554432 112344555554422 4444444444455555555443
Q ss_pred ---CCCCcC-CccccCcCcCcEEeccCCCCc-----ccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 442 ---SKLTNL-PVGISKVVSLQHLDLSESDIE-----ELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 442 ---~~l~~l-p~~~~~l~~L~~L~l~~~~l~-----~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
++++.+ +..|..+.+|+.+.+.++.+. .++ ..+..+.+|+.+.+.+ ++..++...+..+++|+.+.+
T Consensus 254 ~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 254 KLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred EeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence 233333 334556666666666665443 343 3455666666666663 256666666666666776666
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.50 E-value=0.00043 Score=70.34 Aligned_cols=46 Identities=30% Similarity=0.293 Sum_probs=40.6
Q ss_pred CcccchHHHH---HHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQL---EQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+||.+..+ ..+...+..+....+.|+|.+|+||||+|+.+++..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4588999988 778888887877889999999999999999999875
No 185
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.47 E-value=0.00028 Score=66.29 Aligned_cols=47 Identities=28% Similarity=0.212 Sum_probs=36.5
Q ss_pred CCcccchHHHHHHHHHHhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLV---E---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.+..++++.+.+. . ...+-+.|+|.+|+||||+|+++++..
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3458899998888876542 1 123458899999999999999999875
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.47 E-value=0.00032 Score=69.40 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..+++|.+.+.. ...+.|.|+|.+|+|||+||+++++..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999887641 345689999999999999999998875
No 187
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.42 E-value=0.0003 Score=68.97 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|++..++++..++.. .....|.|+|++|+|||++|+++++..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999888763 345678999999999999999998875
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.41 E-value=0.00035 Score=68.05 Aligned_cols=46 Identities=26% Similarity=0.421 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHhc----------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLV----------E--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..+++|.+.+. . ...+-|.|+|++|+|||+||+++++..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 458999999999988772 1 124578999999999999999999875
No 189
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.40 E-value=0.00063 Score=68.12 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|...+.. ...+-|.|+|.+|+|||+||+++++..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999888731 234689999999999999999998875
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.38 E-value=0.00077 Score=66.90 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=37.0
Q ss_pred CCcccchHHHHHHH---HHHhccCC--CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQV---WRCLVEEP--AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l---~~~L~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|||++..++.+ .+.+..+. .+.+.|+|++|+|||++|+++++..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999997775 44444443 3589999999999999999999886
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.36 E-value=0.00047 Score=76.42 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|||++++.++.+.|......-+.++|.+|+|||++|+.+++..
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999987666678999999999999999999875
No 192
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.34 E-value=0.00026 Score=69.96 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=92.5
Q ss_pred CcccceEEEeecCCccc----------CCC-CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCc-CCccc
Q 048813 384 GWEKARRLSLMHNQITN----------LSE-IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTN-LPVGI 451 (552)
Q Consensus 384 ~~~~l~~L~l~~~~l~~----------l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~ 451 (552)
.+++++.|.+....... +.. +..+++|+.|.+.+|.-..++. + .+++|+.|++..+.+.. ....+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHH
Confidence 45688888886543221 111 2556889999998873224444 3 37899999999887653 11233
Q ss_pred --cCcCcCcEEeccCC--C------Ccccchhh--hcCCCCCEEecCCCcCccccchhh--hcCCCCcceeeecCcCCCC
Q 048813 452 --SKVVSLQHLDLSES--D------IEELPGEL--KALVNLKCLDLEYTRNLITIPRQL--ISNLSRLHVLRMFGASHNA 517 (552)
Q Consensus 452 --~~l~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~l~~lP~~~--i~~l~~L~~L~l~~~~~~~ 517 (552)
..+++|+.|+|+.+ . +..+...+ ..+++|++|++++|......+..+ ...+++|++|++.. |.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~---n~ 290 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA---GV 290 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS---SC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC---CC
Confidence 36889999988531 1 22222222 357899999998886322222221 13578899999943 44
Q ss_pred CccccccccccCCCcchhHhhcCCCCCceEEEE
Q 048813 518 FDEASEDSILFGGGELIVEELLGLKYLEVISFT 550 (552)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 550 (552)
+.+.. .......+.++++|+.|+++
T Consensus 291 L~d~G--------~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 291 LTDEG--------ARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp CBHHH--------HHHHHTTHHHHTTCSEEECC
T ss_pred CChHH--------HHHHHhhcccCCcceEEECC
Confidence 43200 01233445778899998875
No 193
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.33 E-value=0.00084 Score=67.41 Aligned_cols=126 Identities=16% Similarity=0.229 Sum_probs=91.3
Q ss_pred CcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC-----cC-Ccccc
Q 048813 381 DVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT-----NL-PVGIS 452 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~-----~l-p~~~~ 452 (552)
.+.++.+++.+.+..+ +..++ .|.. .+|+.+.+ .+.+..++...|..+++|+.+++.++.+. .+ +..|.
T Consensus 221 aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred HhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 4556667777777653 33332 2333 56777777 45567777777888999999999887665 34 45788
Q ss_pred CcCcCcEEeccCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeecCc
Q 048813 453 KVVSLQHLDLSESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMFGA 513 (552)
Q Consensus 453 ~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~~ 513 (552)
.+.+|+.+.+.. +++.++. .+.++.+|+.+.+..+ +..++..++.++ +|+.+.+.+.
T Consensus 298 ~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 888999999984 5777764 4777889999999654 778887778888 8999988543
No 194
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.30 E-value=0.00033 Score=64.75 Aligned_cols=61 Identities=8% Similarity=0.025 Sum_probs=42.9
Q ss_pred CCcccch---HHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 76 EPTVIGL---QSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 76 ~~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
...|+|. +..++.+......+..+.+.|+|++|+||||+|+++++... .....+.|+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~ 90 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGI 90 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGG
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHH
Confidence 3456663 46666776666655668899999999999999999998862 2234456666543
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.30 E-value=0.00047 Score=67.19 Aligned_cols=47 Identities=17% Similarity=0.018 Sum_probs=39.8
Q ss_pred CCcccchHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.+..++.+.+++..+.. .++.+.|++|+|||++|+++++..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 35589999999999999987644 567778889999999999998875
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.27 E-value=0.00079 Score=66.40 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|...+.. ...+-|.|+|++|+|||+||+++++..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999999999887631 123468899999999999999999876
No 197
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.25 E-value=0.00029 Score=59.97 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 79 VIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
++|.+... ...|..-....++|+|..|+|||||++.+++... . .. ..++++...
T Consensus 20 ~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g-~~~~~~~~~ 73 (149)
T 2kjq_A 20 LGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AG-KNAAYIDAA 73 (149)
T ss_dssp CSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHH-T-TT-CCEEEEETT
T ss_pred CcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHH-h-cC-CcEEEEcHH
Confidence 45555443 2333222457899999999999999999999862 2 11 225666544
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.24 E-value=0.0012 Score=64.31 Aligned_cols=47 Identities=30% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCccc-ch--HHHHHHHHHHhccC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVI-GL--QSQLEQVWRCLVEE--PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~v-Gr--~~~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|| |. ......+...+... ....+.|+|++|+||||||+.+++..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34454 53 23344444444443 34689999999999999999999876
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0011 Score=66.48 Aligned_cols=45 Identities=29% Similarity=0.407 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.++.+++|.+.+.- ...+=|-++|++|+|||+||+++++..
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 378999999999876531 245679999999999999999999986
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0012 Score=65.21 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.++.+++|.+.+.- ...+=|-++|++|.|||.||+++++..
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 378999999999876531 245678899999999999999999986
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.22 E-value=0.0003 Score=59.60 Aligned_cols=45 Identities=29% Similarity=0.282 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|++..+.++.+.+.. ....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999887753 333457899999999999999998864
No 202
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0012 Score=66.23 Aligned_cols=45 Identities=29% Similarity=0.343 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.++.+++|.+.+.. ...+=|-++|++|.|||.||+++++..
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 378999999999876431 245678999999999999999999986
No 203
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.21 E-value=0.00029 Score=71.63 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=53.5
Q ss_pred ccc-chHHH--HHHHHHHhccCC-CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHH
Q 048813 78 TVI-GLQSQ--LEQVWRCLVEEP-AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEK 153 (552)
Q Consensus 78 ~~v-Gr~~~--~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 153 (552)
.|| |.... ...+........ ...+.|+|.+|+||||||+++++.... ...-..+++++.+ .+...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHH------HHHHHHHHH
Confidence 355 64332 333333333332 578999999999999999999987621 1111234555433 233444443
Q ss_pred cCCCCcccccccHHHHHHHHHHHhccceEEEEEcccccc
Q 048813 154 IGLLNDTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
+... .. ..+...+..+..+|++||+...
T Consensus 179 ~~~~-------~~----~~~~~~~~~~~~vL~IDEi~~l 206 (440)
T 2z4s_A 179 MKEG-------KL----NEFREKYRKKVDILLIDDVQFL 206 (440)
T ss_dssp HHTT-------CH----HHHHHHHTTTCSEEEEECGGGG
T ss_pred HHcc-------cH----HHHHHHhcCCCCEEEEeCcccc
Confidence 3211 11 1223333335679999999654
No 204
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.19 E-value=0.0012 Score=72.22 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=40.9
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++||+.+++++.+.|......-+.|+|.+|+|||++|+.+++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3478999999999999987666778999999999999999998875
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.19 E-value=0.00093 Score=68.05 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhc------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLV------------EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+++++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 448999999999988763 1234679999999999999999999874
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0014 Score=65.77 Aligned_cols=46 Identities=28% Similarity=0.391 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+.|.++.+++|.+.+.- ...+=|-++|++|.|||+||+++++..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3488999999999876421 356778999999999999999999986
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0013 Score=65.96 Aligned_cols=45 Identities=33% Similarity=0.437 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.++.+++|.+.+.- ...+=|-++|++|+|||+||+++++..
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999876531 245668999999999999999999986
No 208
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.09 E-value=0.0003 Score=67.15 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=45.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEE--CCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVV--SKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
.+++.|+|++|+|||+||.+++... ...++|++. .+..+ .. . .+.++....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~------G~~VlyIs~~~eE~v~-------------~~----~-~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL------GGKDKYATVRFGEPLS-------------GY----N-TDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH------HTTSCCEEEEBSCSST-------------TC----B-CCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC------CCCEEEEEecchhhhh-------------hh----h-cCHHHHHHHHHH
Confidence 3577899999999999999998752 113456666 33211 00 1 334555566666
Q ss_pred HhccceEEEEEccccc
Q 048813 176 ILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 176 ~l~~k~~LlVlDdv~~ 191 (552)
.+...+ ++|+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 676666 999999854
No 209
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.09 E-value=0.00063 Score=65.74 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=43.0
Q ss_pred cccchHHHHHHHHHHhccC---------CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 78 TVIGLQSQLEQVWRCLVEE---------PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
.++|.+..++.+...+... ....+.|+|.+|+|||++|+.+++.. ...-...+.+.++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~---~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL---FDTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH---HSCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH---cCCCcceEEeeccc
Confidence 3779999999988877542 23589999999999999999999876 22222345555543
No 210
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.09 E-value=0.00044 Score=71.01 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=40.1
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|||+.+++.+...+......-+.|+|.+|+|||++|+.+++..
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999977655677899999999999999999875
No 211
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.0027 Score=58.72 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccC----CCCeEEEEEECCccCHHHHHHHHHHHcCCCCc----c---ccccc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTT----NFNYVIWVVVSKDLRLENIQETIGEKIGLLND----T---WKNRR 165 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 165 (552)
.-.++.|+|.+|+||||||..++... .... .-..++|+.....+....+. .+++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 34699999999999999999998753 1111 23578999877655544332 34455554321 0 01112
Q ss_pred HHH---HHHHHHHHhc-cceEEEEEcccccc
Q 048813 166 IEQ---KALDIFRILK-EQKFVLLLDDLWQR 192 (552)
Q Consensus 166 ~~~---~~~~l~~~l~-~k~~LlVlDdv~~~ 192 (552)
..+ ....+.+.+. .+.-++|+|++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 222 2333444444 36679999998543
No 212
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.07 E-value=0.0019 Score=65.89 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=36.4
Q ss_pred CCcccchHHHHHHHHHHhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLV---E---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.++.++++.+... . ...+-|.|+|++|+|||+||+++++..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3458899998888876543 1 122458899999999999999999875
No 213
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.00043 Score=68.25 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=40.5
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|+++.++.+...+..+....+.|+|++|+||||+|+.+++..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987755558999999999999999998875
No 214
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0019 Score=64.05 Aligned_cols=45 Identities=33% Similarity=0.470 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.++.+++|.+.+.- ...+=|-++|++|.|||.||+++++..
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 377899999999876531 245679999999999999999999986
No 215
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.03 E-value=0.0018 Score=63.31 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-.++.|+|.+|+||||||.+++.... ..-..++|++....++.. .+++++...... ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 457999999999999999999988752 222457888877666644 455666543221 233455555555
Q ss_pred HHHhc-cceEEEEEcccccc
Q 048813 174 FRILK-EQKFVLLLDDLWQR 192 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~~~ 192 (552)
...++ .+.-++|+|.+...
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 55443 44568899998544
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.01 E-value=0.0018 Score=58.79 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc----------cccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT----------WKNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------~~~~~~ 166 (552)
.-.++.|+|.+|+||||||..++. . .-..++|+......+...+.. +.+..+..... ......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 446999999999999999999987 2 124688888776555554443 33333321100 011111
Q ss_pred HHHHHHHHHHhccceEEEEEcccccc
Q 048813 167 EQKALDIFRILKEQKFVLLLDDLWQR 192 (552)
Q Consensus 167 ~~~~~~l~~~l~~k~~LlVlDdv~~~ 192 (552)
.+....+...+..+.-++|+|.+...
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 23334444444344679999997543
No 217
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.93 E-value=0.0044 Score=60.17 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=58.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhccc---CCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc-------cccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLEST---TNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 166 (552)
.-.++.|+|.+|+||||||.+++....... ..-..++|++....++...+. .+++.++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 346999999999999999999876641110 013578999988877666554 345566553211 011122
Q ss_pred H---HHHHHHHHHhc--cceEEEEEccccc
Q 048813 167 E---QKALDIFRILK--EQKFVLLLDDLWQ 191 (552)
Q Consensus 167 ~---~~~~~l~~~l~--~k~~LlVlDdv~~ 191 (552)
+ +....+...++ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 23444555554 3567999999743
No 218
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.0032 Score=59.52 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=34.4
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+.|.++.+++|.+.+.. ...+=+.++|++|+||||||++++...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4478999988888775421 111239999999999999999999875
No 219
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.88 E-value=0.0031 Score=61.80 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-+++.|+|.+|+||||||.+++... ...-..++|++....++.. .++.++...... ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~---~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999988765 2223568899988766543 355566543221 223445555444
Q ss_pred HHHhc-cceEEEEEccccc
Q 048813 174 FRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~~ 191 (552)
....+ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 44443 3456999999844
No 220
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.87 E-value=0.0061 Score=59.63 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhccc---CCCCeEEEEEECCccCHHHHHHHHHHHcCCCCc----------cccc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLEST---TNFNYVIWVVVSKDLRLENIQETIGEKIGLLND----------TWKN 163 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~ 163 (552)
.-.++.|+|.+|+||||||.+++....... +.-..++|++....++...+.. ++..++.... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999999887631111 0235789999888777665543 4455554321 0011
Q ss_pred ccHHHHHHHHHHHhc---cceEEEEEccccc
Q 048813 164 RRIEQKALDIFRILK---EQKFVLLLDDLWQ 191 (552)
Q Consensus 164 ~~~~~~~~~l~~~l~---~k~~LlVlDdv~~ 191 (552)
....+....+.+.++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 112233334444444 4556999998843
No 221
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.85 E-value=0.002 Score=65.85 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHHHhc---cC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLV---EE--PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~---~~--~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++.+...+. .+ ..+-+.++|++|+|||++|+++++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 558999999887655442 32 33578899999999999999999986
No 222
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.84 E-value=0.0032 Score=61.74 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-+++.|.|.+|+||||||.+++... ...-..++|++....++.. .+..++...+.+ ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~---~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 45699999999999999999988765 2223468999988776643 245555443221 122344444444
Q ss_pred HHHhc-cceEEEEEccccc
Q 048813 174 FRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~~ 191 (552)
....+ .+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 44333 3445899999743
No 223
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.82 E-value=0.0029 Score=65.00 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..+++|.+.+.. ...+-|.|+|.+|+|||++|+++++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3488999999999887642 344578999999999999999998875
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.82 E-value=0.00042 Score=58.52 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=34.5
Q ss_pred cccchHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+++++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 478999999998887753 333457899999999999999998764
No 225
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0059 Score=58.03 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHH-HHHHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQK-ALDIF 174 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 174 (552)
.++-|.|.+|+||||||.+++.... ....-..++||+....++.. .+++++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 3789999999999999988876652 11123578999988777653 367777654332 23344554 33322
Q ss_pred HH--h-ccceEEEEEcccccc
Q 048813 175 RI--L-KEQKFVLLLDDLWQR 192 (552)
Q Consensus 175 ~~--l-~~k~~LlVlDdv~~~ 192 (552)
.. + +.+.-++|+|-+-..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 2 346789999998544
No 226
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.77 E-value=0.0041 Score=61.18 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc---cccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT---WKNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 173 (552)
.-.++.|.|.+|+||||||.+++... ...-..++|++....++.. .++.++.+... ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~---~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA---QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH---HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 34689999999999999999887765 2223478999988776643 24555554321 1223455555555
Q ss_pred HHHhcc-ceEEEEEccccc
Q 048813 174 FRILKE-QKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~~-k~~LlVlDdv~~ 191 (552)
.+..+. +--+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 555443 345899999843
No 227
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.76 E-value=0.0031 Score=59.84 Aligned_cols=47 Identities=26% Similarity=0.179 Sum_probs=35.2
Q ss_pred CCcccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.++.++++.+.... .-.+-+.|+|.+|+||||||+.+++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 34588999888777665421 111238999999999999999999875
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.76 E-value=0.0018 Score=70.12 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhc----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLV----E---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++..
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 37889998888887653 1 245679999999999999999999876
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.76 E-value=0.001 Score=63.65 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+.+.++|++|+|||+||+++++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999986
No 230
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.74 E-value=0.00073 Score=61.45 Aligned_cols=88 Identities=15% Similarity=-0.028 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFRI 176 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 176 (552)
...++.|+|..|+||||+|..++++. ..+...++.+....... -...++++++...+........+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~---~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL---EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH---HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH---HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 44789999999999999998888876 23333445554333221 1224555666543332233334444444444
Q ss_pred hccce-EEEEEcccc
Q 048813 177 LKEQK-FVLLLDDLW 190 (552)
Q Consensus 177 l~~k~-~LlVlDdv~ 190 (552)
+.+.+ -+||+|.+.
T Consensus 85 ~~~~~~dvViIDEaQ 99 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQ 99 (223)
T ss_dssp TSCTTCCEEEECSGG
T ss_pred hhCCCCCEEEEecCc
Confidence 43344 499999984
No 231
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.70 E-value=0.0014 Score=63.21 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE--------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+...+.. .....+.|+|.+|+|||++|+++++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4488999999999887753 234578899999999999999998875
No 232
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.00092 Score=65.92 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=39.0
Q ss_pred CcccchHHHHHHHHHHh-ccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCL-VEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+.+.+ ..+....+.|+|+.|+||||+|+.+++..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45889999999999988 66554459999999999999999998853
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.66 E-value=0.002 Score=57.76 Aligned_cols=42 Identities=19% Similarity=0.443 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHhcc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 81 GLQSQLEQVWRCLVE---EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|++.++++.+.+.. ....+|+|.|..|+||||+|+.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777888877764 345799999999999999999998765
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.65 E-value=0.0016 Score=62.65 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhccC---CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 82 LQSQLEQVWRCLVEE---PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 82 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+...++.+.+++... ....+.|+|.+|+|||+||+++++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334444555555531 24688999999999999999999976
No 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.65 E-value=0.0015 Score=71.56 Aligned_cols=45 Identities=27% Similarity=0.393 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|||+++++++...|......-+.++|.+|+|||++|+.+++..
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999987666678899999999999999999875
No 236
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0017 Score=63.60 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.|...+..+....+.++|+.|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999988887765559999999999999999999875
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.62 E-value=0.008 Score=58.27 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhccc---------CCC----CeEEEEEECCccCHHHHHHHHHHHcCCCCcc---
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLEST---------TNF----NYVIWVVVSKDLRLENIQETIGEKIGLLNDT--- 160 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--- 160 (552)
.-.++.|+|.+|+||||||.+++....... ... ..++|++....++...+.+ +++.++.+...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999998876521110 111 4789999888777666553 34556543210
Q ss_pred ----cccccHH---HHHHHHHHHhcc--ceEEEEEcccc
Q 048813 161 ----WKNRRIE---QKALDIFRILKE--QKFVLLLDDLW 190 (552)
Q Consensus 161 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv~ 190 (552)
....+.+ +....+.+.++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 1112222 233445555543 45689999873
No 238
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.0082 Score=57.55 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 81 GLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
|-++.++.+.+.+..+....+.++|+.|+||||+|+.+++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45667788888887776778999999999999999999875
No 239
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.55 E-value=0.0028 Score=61.77 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL 141 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~ 141 (552)
..-..++|+|.+|+|||||++.+.+........++ ++++-+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 44578999999999999999999876521122333 4457777653
No 240
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.54 E-value=0.0026 Score=59.83 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 77 PTVIGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
..++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++.. ...-...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~---~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS---SRWQGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS---TTTTSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc---CccCCCeEEEecCC
Confidence 4578999998888776642 233567899999999999999998875 11112345555554
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.53 E-value=0.0017 Score=71.14 Aligned_cols=45 Identities=31% Similarity=0.384 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|.+..+++|.+.+.. .....|.|+|.+|+||||||+++++..
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 388999999999887642 234579999999999999999998875
No 242
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.52 E-value=0.0016 Score=63.69 Aligned_cols=46 Identities=30% Similarity=0.307 Sum_probs=37.5
Q ss_pred CcccchHHHHHHHHHHhcc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-----EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+...+.. +....+.|+|++|+||||||+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3478998888888766643 244689999999999999999999876
No 243
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.48 E-value=0.0016 Score=61.32 Aligned_cols=47 Identities=23% Similarity=0.140 Sum_probs=36.8
Q ss_pred CCcccchHHHHHHHHHHhcc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVE------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.+..++++.+.+.. ...+-+.|+|.+|+|||++|+++++..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 34588999888888776541 123347899999999999999999876
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.45 E-value=0.0028 Score=57.22 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 84 SQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 84 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.+++|.+.+.. +...+|+|+|..|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666666553 456799999999999999999998876
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.41 E-value=0.0096 Score=54.43 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
.-.+++|.|.+|+|||||++.++..... .-..++|+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc
Confidence 3469999999999999999999866521 123466665443
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.39 E-value=0.0062 Score=62.43 Aligned_cols=47 Identities=26% Similarity=0.206 Sum_probs=36.2
Q ss_pred CCcccchHHHHHHHHHHhc---cC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLV---EE---------PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.++.++++.+... .. -.+-+.|+|.+|+||||||+++++..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999988888876543 11 12348999999999999999999875
No 247
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.34 E-value=0.021 Score=51.96 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhc--ccC-CCCeEEEEEECCccCHHHHHHHHHHHcCC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLE--STT-NFNYVIWVVVSKDLRLENIQETIGEKIGL 156 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 156 (552)
.-.+++|+|..|+|||||++.++..... ... ....++|+.-........ ...+.+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 3479999999999999999999874311 111 234688887655433332 3344444443
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.26 E-value=0.0023 Score=56.00 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998875
No 249
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.26 E-value=0.035 Score=55.24 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcc---cCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCcc-------cccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLES---TTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDT-------WKNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 166 (552)
.-.++.|+|.+|+|||||+..++-..... ...-..++|++....++...+ ..+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 44699999999999999999765332110 113357889987766555443 3366666654220 011122
Q ss_pred H---HHHHHHHHHhc-cceEEEEEccccc
Q 048813 167 E---QKALDIFRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 167 ~---~~~~~l~~~l~-~k~~LlVlDdv~~ 191 (552)
. +....+...+. .+.-++|+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2 22233333333 3567889998743
No 250
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.25 E-value=0.023 Score=57.20 Aligned_cols=52 Identities=21% Similarity=0.413 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGE 152 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~ 152 (552)
..++|+|.+|+||||||+.+..... ....+.++++-+++.. ...++.+++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 4789999999999999999988752 1223456777777654 34455555543
No 251
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.23 E-value=0.0024 Score=55.46 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998875
No 252
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.17 E-value=0.02 Score=56.06 Aligned_cols=95 Identities=22% Similarity=0.304 Sum_probs=54.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhh--cccCCC-CeEEEEEECCccCHHHHHHHHHHHcCCCCcc----------ccc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFL--ESTTNF-NYVIWVVVSKDLRLENIQETIGEKIGLLNDT----------WKN 163 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------~~~ 163 (552)
.-.++.|+|..|+|||||+..++.... ...+.. ..++|++....+....+ ..+++..+..... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 457999999999999999999887641 111111 24588887665443333 3345544432210 011
Q ss_pred ccHHHHHHHHHHHhc------cceEEEEEcccccc
Q 048813 164 RRIEQKALDIFRILK------EQKFVLLLDDLWQR 192 (552)
Q Consensus 164 ~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~ 192 (552)
....+....+...+. .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 112233444445554 36679999997443
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.14 E-value=0.022 Score=54.28 Aligned_cols=86 Identities=14% Similarity=0.119 Sum_probs=46.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCCCCcccccccHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGLLNDTWKNRRIEQKALDIFR 175 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 175 (552)
...+++|+|.+|+||||++..++... .. ..-..+..+..... ....+.+.......+.+.. ...+..+....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-ML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 45799999999999999999998776 21 12234555554432 2233334444444444321 1122233333333
Q ss_pred HhccceEEEEEcc
Q 048813 176 ILKEQKFVLLLDD 188 (552)
Q Consensus 176 ~l~~k~~LlVlDd 188 (552)
.+ .+.-++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 23 3334677883
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.11 E-value=0.0033 Score=56.24 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.|+|++|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998875
No 255
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.11 E-value=0.0035 Score=61.08 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.++|+++.++.+...+..+ .-+.++|.+|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 44789999999998887765 468899999999999999998875
No 256
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.10 E-value=0.0026 Score=62.48 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=35.3
Q ss_pred CCcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.+..++.+...+......-+.|+|.+|+|||++|+++++..
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 34588999877665544443333458999999999999999999875
No 257
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.08 E-value=0.036 Score=55.72 Aligned_cols=101 Identities=20% Similarity=0.322 Sum_probs=62.5
Q ss_pred HHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCC------Ccc-
Q 048813 90 WRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLL------NDT- 160 (552)
Q Consensus 90 ~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~- 160 (552)
++.|.. ..-.-++|+|..|+|||+|++.+.+... +.+-+.++++-+++.. ...++.+++...=.+. ...
T Consensus 144 ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 144 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 444443 3456899999999999999999988741 3345778888888765 4567777776542221 100
Q ss_pred -cc--cccH------HHHHHHHHHHh---ccceEEEEEcccccc
Q 048813 161 -WK--NRRI------EQKALDIFRIL---KEQKFVLLLDDLWQR 192 (552)
Q Consensus 161 -~~--~~~~------~~~~~~l~~~l---~~k~~LlVlDdv~~~ 192 (552)
.. .... ......+-+++ +++.+|+++||+...
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 00 1111 11222344444 358999999998543
No 258
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.08 E-value=0.007 Score=56.42 Aligned_cols=47 Identities=26% Similarity=0.213 Sum_probs=34.7
Q ss_pred CCcccchHHHHHHHHHHhc---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLV---E---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++|.++.+.++.+... . .-.+-+.|+|.+|+||||||+++++..
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3458898887777765432 1 111238999999999999999999875
No 259
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.07 E-value=0.0043 Score=63.69 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.++|+++.++.+...+..+ .-|.|+|.+|+|||+||+++++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 34789999999988877765 478899999999999999998865
No 260
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.07 E-value=0.01 Score=48.84 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=25.2
Q ss_pred eeecccCCCc--ccCchhhcCCCCceEEEcCCCCCCcCCc-cccCcCcCcEEeccCCC
Q 048813 412 TCFLNRNGLQ--MIPNDFFQFMPSLKVLNLSYSKLTNLPV-GISKVVSLQHLDLSESD 466 (552)
Q Consensus 412 ~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 466 (552)
.++.+++.+. .+|..+ ..+|+.|+|++|.|+.+|. .+..+.+|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444444444 444331 2345555555555555543 23445555555555553
No 261
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.06 E-value=0.007 Score=58.64 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHHhc----cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 80 IGLQSQLEQVWRCLV----EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 80 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|+.+..++++.+.+. .+....|.|+|+.|+||||+|+.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 456666777766653 3456679999999999999999988765
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.04 E-value=0.0031 Score=54.83 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 048813 99 GIVGLYGMGGVGKTTLLTHI 118 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v 118 (552)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 263
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.03 E-value=0.0056 Score=58.79 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|++..+.++.+.+.. .....|.|+|.+|+|||++|+++++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 478999999998887753 334567899999999999999998864
No 264
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.00 E-value=0.048 Score=52.67 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=35.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGL 156 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 156 (552)
...+++|+|+.|+||||+++.++... ... . ..+.++..... ....+-+....+.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l-~~~-~-g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL-KNH-G-FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH-HHT-T-CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hhc-C-CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 45799999999999999999998876 221 2 23444443321 2233444555666653
No 265
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.99 E-value=0.0043 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
...+++|+|+.|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999775
No 266
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.98 E-value=0.0057 Score=54.72 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=24.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 95 EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 95 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.....+|+|+|+.|+||||+|+.++...
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999998876
No 267
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.98 E-value=0.0064 Score=60.09 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHHHhc-------------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV-------------E--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|.+..++.+...+. . .....|.++|++|+|||++|+++++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999988772 1 134578999999999999999999875
No 268
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.97 E-value=0.0074 Score=55.02 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 82 LQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 82 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++..+.+...+.......|+|+|.+|+|||||+..+....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455666666666677899999999999999999988775
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.95 E-value=0.0042 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.|+|++|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998875
No 270
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.93 E-value=0.0036 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|+|+|+.|+||||+|+.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.92 E-value=0.02 Score=54.83 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcc--------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH--HHHHHHHH
Q 048813 83 QSQLEQVWRCLVE--------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE--NIQETIGE 152 (552)
Q Consensus 83 ~~~~~~l~~~L~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~ 152 (552)
+...++|.+.+.. ....+|+|+|.+|+||||++..++... . ..-..+.++.... +... +-+...++
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l-~--~~g~kV~lv~~D~-~r~~a~eqL~~~~~ 156 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF-V--DEGKSVVLAAADT-FRAAAIEQLKIWGE 156 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH-H--HTTCCEEEEEECT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH-H--hcCCEEEEEcccc-ccHHHHHHHHHHHH
Confidence 3445555555532 235699999999999999999998876 2 2223455555442 2222 22234455
Q ss_pred HcCCCCcc-cccccHHHH-HHHHHHHhccceEEEEEccc
Q 048813 153 KIGLLNDT-WKNRRIEQK-ALDIFRILKEQKFVLLLDDL 189 (552)
Q Consensus 153 ~l~~~~~~-~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv 189 (552)
..+.+.-. ....+.... ...+.+.+....-++|+|-.
T Consensus 157 ~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 157 RVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 55432210 011122222 23344444444457788854
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.92 E-value=0.0043 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~ 120 (552)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 273
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.89 E-value=0.034 Score=54.09 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHhccCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 82 LQSQLEQVWRCLVEEPA-GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 82 r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++..+.+.+.+..++. ..+.++|+.|+|||++|+.+++..
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 35667777777776654 468999999999999999998875
No 274
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.87 E-value=0.008 Score=59.68 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHhc------------------------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLV------------------------------EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|.+..++.|...+. ......+.++|++|+|||++|+++++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 47899988888877662 0123568999999999999999999875
No 275
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.86 E-value=0.0053 Score=54.19 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.|.|++|+||||+|+.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.85 E-value=0.0051 Score=55.05 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+|+|+|+.|+||||||+.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998764
No 277
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.85 E-value=0.0048 Score=53.42 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|.|+.|+||||+|+.++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.85 E-value=0.0084 Score=56.98 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+|+|.|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988776
No 279
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.83 E-value=0.049 Score=54.59 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=35.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGL 156 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 156 (552)
+..+|.++|.+|+||||++..++... ...-..++-+++... ....+-+.......+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l---~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gv 156 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF---QKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHI 156 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEEECCCSSTHHHHHHHHHHGGGTC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH---HHCCCeEEEEeCCCcchhHHHHHHHHHHhcCC
Confidence 36799999999999999999998876 223234444554322 1222334444555544
No 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.82 E-value=0.0043 Score=55.59 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.82 E-value=0.0053 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999876
No 282
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.81 E-value=0.007 Score=54.95 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 81 GLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+.++..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 455666666666665678899999999999999999988765
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.81 E-value=0.005 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998764
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.77 E-value=0.0051 Score=53.92 Aligned_cols=25 Identities=40% Similarity=0.379 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|+|++|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998775
No 285
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.023 Score=52.40 Aligned_cols=41 Identities=24% Similarity=0.171 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD 140 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~ 140 (552)
.-.++.|.|.+|+||||||..++.... ..-..++|+.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 346999999999999999988876541 22346788875543
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.74 E-value=0.0064 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 287
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.70 E-value=0.0059 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998875
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.70 E-value=0.0069 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|+|+.|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 289
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.67 E-value=0.056 Score=51.42 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=47.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-ccccHHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-KNRRIEQKALDIFR 175 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 175 (552)
..+++++|.+|+||||++..++... . ..-..+.++...... ...+.+.......+.+--.. ...+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-K--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-H--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 5689999999999999999998776 2 223345666654322 22233344455555431110 11233333333334
Q ss_pred HhccceE-EEEEccc
Q 048813 176 ILKEQKF-VLLLDDL 189 (552)
Q Consensus 176 ~l~~k~~-LlVlDdv 189 (552)
.++.+.| ++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4432233 6677753
No 290
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.66 E-value=0.042 Score=54.92 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHH--HHHHHHHHHcCC
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLE--NIQETIGEKIGL 156 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~ 156 (552)
..+|+|+|.+|+||||++..++... ...-..+..+... .+... +.+.......+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l---~~~g~~Vllvd~D-~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY---KGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEEECC-SSCHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEeecc-ccCchhHHHHHHhcccCCc
Confidence 5689999999999999999998876 2233345555543 33332 223444555554
No 291
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.64 E-value=0.0056 Score=53.41 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998875
No 292
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.63 E-value=0.0071 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 293
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.63 E-value=0.007 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|.|+.|+||||+|+.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 294
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.63 E-value=0.047 Score=55.11 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=63.4
Q ss_pred HHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCC-------Ccc
Q 048813 90 WRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLL-------NDT 160 (552)
Q Consensus 90 ~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~ 160 (552)
++.|.. ..-.-++|.|..|+|||+|+..+.++.. +.+-+.++++-+++.. ...++.+++...=.+. ...
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 344443 3456899999999999999999988741 3455788888888765 4667777776542221 100
Q ss_pred -----ccc-----ccHHHHHHHHHHHhc---cceEEEEEcccccc
Q 048813 161 -----WKN-----RRIEQKALDIFRILK---EQKFVLLLDDLWQR 192 (552)
Q Consensus 161 -----~~~-----~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~ 192 (552)
.+. .........+-++++ ++.+|+++||+...
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 000 011122233445554 57999999998543
No 295
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.62 E-value=0.0061 Score=54.71 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998765
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.59 E-value=0.0069 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999998875
No 297
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.57 E-value=0.044 Score=52.76 Aligned_cols=51 Identities=10% Similarity=0.001 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGE 152 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 152 (552)
.-.++.|.|.+|+||||+|..++... ... -..++|++... +..++...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~--g~~vl~~slE~--s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDN--DDVVNLHSLEM--GKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTT--TCEEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHc--CCeEEEEECCC--CHHHHHHHHHH
Confidence 44699999999999999999988765 222 26788887663 34555555443
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.57 E-value=0.0081 Score=53.75 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 299
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0077 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 300
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.56 E-value=0.0059 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998875
No 301
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.55 E-value=0.007 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998876
No 302
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.55 E-value=0.053 Score=54.30 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=35.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc-cCHHHHHHHHHHHcCC
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD-LRLENIQETIGEKIGL 156 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~ 156 (552)
..+|.++|.+|+||||++..++... . ..-..+..++.... ....+-+.......+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l-~--~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY-K--KRGYKVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH-H--HTTCCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEecCccchhHHHHHHHHHHhcCC
Confidence 5799999999999999999998876 2 22234445554421 1222334444455554
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.51 E-value=0.0084 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998775
No 304
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.51 E-value=0.0088 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999763
No 305
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.51 E-value=0.0081 Score=55.93 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999998764
No 306
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.49 E-value=0.008 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999753
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.49 E-value=0.0082 Score=55.68 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|+.|+|||||++.++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998664
No 308
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.48 E-value=0.009 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999997653
No 309
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.48 E-value=0.014 Score=55.43 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 310
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.47 E-value=0.087 Score=52.07 Aligned_cols=121 Identities=21% Similarity=0.235 Sum_probs=83.1
Q ss_pred cccceEEEeecCCcccC--CCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEEe
Q 048813 385 WEKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLD 461 (552)
Q Consensus 385 ~~~l~~L~l~~~~l~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~ 461 (552)
...+..+.+..+ +..+ ..+..+.+|..+.+..+ +..+....|....+|..+.+..+ ++.++ ..+..+.+|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 345555555432 2222 23566777777777554 55666666777888888888653 55554 4577788888888
Q ss_pred ccCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 462 LSESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 462 l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
+.++.++.+++ .+.++.+|+.+.+..+ +..++..++.++++|+.+.+
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 88888888764 4778888988888643 67788777888888888876
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.47 E-value=0.0088 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.386 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.46 E-value=0.0078 Score=54.93 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 313
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.45 E-value=0.0091 Score=53.52 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 314
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.44 E-value=0.0072 Score=52.46 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998875
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.44 E-value=0.0085 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 316
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.43 E-value=0.017 Score=53.44 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhcc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 81 GLQSQLEQVWRCLVE--EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+..+.+.++...... .....|+|.|++|+||||+|+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444455443322 355789999999999999999998765
No 317
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.42 E-value=0.008 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~ 120 (552)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 318
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.42 E-value=0.0093 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998865
No 319
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.41 E-value=0.009 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|+|.|+.|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 320
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.41 E-value=0.011 Score=59.36 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=36.8
Q ss_pred CcccchHHHHHHHHHHhcc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE--------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.++.++.+...+.. -..+-|.++|++|+||||+|++++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3488999999888766622 124568999999999999999999875
No 321
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.40 E-value=0.11 Score=52.22 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 83 QSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 83 ~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
....+++.+.+.. ...++|.++|.+|+||||+|..++... ... +-..++-+++..
T Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l-~~~-~G~kVllvd~D~ 139 (433)
T 2xxa_A 76 KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL-REK-HKKKVLVVSADV 139 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH-HHT-SCCCEEEEECCC
T ss_pred HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH-HHh-cCCeEEEEecCC
Confidence 3345556666642 245799999999999999999998876 222 134455566553
No 322
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.40 E-value=0.0064 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=18.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998765
No 323
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.39 E-value=0.036 Score=65.50 Aligned_cols=86 Identities=20% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
..++|-|+|++|+|||+||.++.... ...-..++|+++...++... ++.++.+-+.+ .....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 56799999999999999999998875 34455778888887766554 44555322111 122334455555
Q ss_pred HHHhc-cceEEEEEcccc
Q 048813 174 FRILK-EQKFVLLLDDLW 190 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~ 190 (552)
.+..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55443 456799999985
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.39 E-value=0.0099 Score=53.49 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 325
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.39 E-value=0.0095 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.36 E-value=0.0086 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~ 120 (552)
...+++|+|..|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999998553
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.36 E-value=0.0076 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998765
No 328
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.35 E-value=0.062 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45699999999999999999998876
No 329
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.35 E-value=0.0061 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|.|.|+|++|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999997764
No 330
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.34 E-value=0.016 Score=55.68 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHhcc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 80 IGLQSQLEQVWRCLVE----EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 80 vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|-...+..+...+.. ....+|+|.|..|+||||+|+.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555555555554443 245599999999999999999987765
No 331
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.34 E-value=0.0096 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.34 E-value=0.009 Score=53.63 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~ 120 (552)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.33 E-value=0.0096 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 334
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.32 E-value=0.01 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 335
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.30 E-value=0.012 Score=65.15 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhccC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEE---------PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|.+..++.+...+... ....+.|+|.+|+|||++|+++++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999998888776421 23578999999999999999998876
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.26 E-value=0.01 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998865
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.25 E-value=0.01 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 338
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.22 E-value=0.067 Score=50.90 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC-HHHHHHHHHHHcCCCCccc-ccccHHHHHH-HH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR-LENIQETIGEKIGLLNDTW-KNRRIEQKAL-DI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~-~l 173 (552)
...+++|+|.+|+||||++..++... . ..-..+.++....... ....+.......+.+.-.. ...+..+... .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~-~--~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-K--GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH-H--HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 35699999999999999999998876 2 2223455555432221 1112233444454432110 1122333322 33
Q ss_pred HHHhccceEEEEEccc
Q 048813 174 FRILKEQKFVLLLDDL 189 (552)
Q Consensus 174 ~~~l~~k~~LlVlDdv 189 (552)
........=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333344457778864
No 339
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.21 E-value=0.012 Score=53.11 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.|.|++|+||||.|+.++..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998876
No 340
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.21 E-value=0.024 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 341
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.19 E-value=0.014 Score=54.25 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998765
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.18 E-value=0.012 Score=52.96 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 343
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.18 E-value=0.011 Score=51.66 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|+|..|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.16 E-value=0.012 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.386 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|.|.|++|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998875
No 345
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.16 E-value=0.029 Score=56.00 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCC----eEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-----cccccH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFN----YVIWVVVSKDL-RLENIQETIGEKIGLLNDT-----WKNRRI 166 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~~ 166 (552)
.-.-++|.|..|+|||+|+.++++.. ..+.+ .++++-+++.. ...++.+++...=.+.... .+....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~---~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~ 226 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQA---TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAI 226 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC---BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHH---HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHH
Confidence 33567999999999999999999876 22223 67777777654 4566777665431111100 011111
Q ss_pred H-----HHHHHHHHHhc---cceEEEEEccccc
Q 048813 167 E-----QKALDIFRILK---EQKFVLLLDDLWQ 191 (552)
Q Consensus 167 ~-----~~~~~l~~~l~---~k~~LlVlDdv~~ 191 (552)
. .....+-++++ ++.+|+++||+-.
T Consensus 227 ~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 227 ERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1 11223455554 6899999999854
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.16 E-value=0.013 Score=50.60 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+++|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998875
No 347
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.15 E-value=0.02 Score=55.02 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
++.+||+|.|=|||||||.|..++--. ...-..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL---A~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF---SILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH---HHCCCeEEEEecCC
Confidence 578999999999999999998877665 22334567777664
No 348
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.15 E-value=0.13 Score=52.62 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
..++|.|+|.+|+||||++..++.... ..-..+.-|+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~---~~G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ---RKGWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEecc
Confidence 356899999999999999999987762 222334555543
No 349
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.13 E-value=0.021 Score=54.78 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=31.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc
Q 048813 95 EEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL 141 (552)
Q Consensus 95 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~ 141 (552)
....++|+|+|-||+||||+|..++.... ..-..++-|+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La---~~G~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH---HCCCeEEEEeCCCCC
Confidence 34678999999999999999999887762 223356777766443
No 350
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.11 E-value=0.013 Score=51.95 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998765
No 351
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.10 E-value=0.013 Score=52.85 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 352
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.09 E-value=0.012 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|.|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999998764
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.08 E-value=0.01 Score=52.90 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 354
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.03 E-value=0.013 Score=52.99 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 355
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.02 E-value=0.13 Score=51.25 Aligned_cols=104 Identities=22% Similarity=0.392 Sum_probs=75.4
Q ss_pred CCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcCcEEeccCCCCcccch-hhhcCCCCC
Q 048813 404 IPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSLQHLDLSESDIEELPG-ELKALVNLK 481 (552)
Q Consensus 404 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~ 481 (552)
+..|.+|+.+.+..+ +..+....|..+..|+.+.+. +.++.++ ..|..+.+|+.+.+..+ ++++++ .+..+.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 566777777776544 334555667778888888885 4566664 46777888888888753 666654 577888899
Q ss_pred EEecCCCcCccccchhhhcCCCCcceeeecC
Q 048813 482 CLDLEYTRNLITIPRQLISNLSRLHVLRMFG 512 (552)
Q Consensus 482 ~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~~ 512 (552)
.+.+..+ +..++..++.++++|+.+.+.+
T Consensus 338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 338 RIAIPSS--VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EEEECTT--CCBCCGGGGTTCTTCCEEEESS
T ss_pred EEEECcc--cCEEhHhHhhCCCCCCEEEECC
Confidence 9888643 6788887788889999888854
No 356
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.01 E-value=0.015 Score=55.94 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+|+|.|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445799999999999999999998876
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.98 E-value=0.013 Score=54.50 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|+.|+||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999998764
No 358
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.97 E-value=0.039 Score=53.15 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
...+|+|+|.+|+||||++..++... . ..-..++++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l-~--~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY-A--ELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH-H--HTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HCCCeEEEEeCC
Confidence 35699999999999999999998876 2 222345555543
No 359
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.97 E-value=0.016 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+|+|.|..|+||||||+.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998754
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.97 E-value=0.014 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.97 E-value=0.015 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 362
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.95 E-value=0.021 Score=51.48 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445799999999999999999998875
No 363
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.92 E-value=0.014 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 364
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.87 E-value=0.018 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|+.|+||||+|+.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 365
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.86 E-value=0.017 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999998765
No 366
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.86 E-value=0.12 Score=51.35 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=89.9
Q ss_pred CcCCcccceEEEeecCCccc-CCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcCc
Q 048813 381 DVRGWEKARRLSLMHNQITN-LSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSLQ 458 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~ 458 (552)
.+.....+..+.+..+...- -..+..+..+..+...... ++...|..+.+|..+.+..+ ++.+ ...|..+.+|+
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCC
Confidence 34556677777776554321 1235667777776665542 45555778889999998764 6666 45688889999
Q ss_pred EEeccCCCCcccc-hhhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeeec
Q 048813 459 HLDLSESDIEELP-GELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRMF 511 (552)
Q Consensus 459 ~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l~ 511 (552)
.+++.. .+++++ ..+.++.+|+.+.+..+ +..++..++..+++|+.+.+.
T Consensus 324 ~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 324 SIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred EEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 999975 477775 45788999999999754 788888889999999999884
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.83 E-value=0.0086 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|..|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 368
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.78 E-value=0.022 Score=60.28 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=37.8
Q ss_pred cccchHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 78 TVIGLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 78 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 3789999998888877766 589999999999999999998875
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.78 E-value=0.015 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 370
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.76 E-value=0.018 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHIN 119 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~ 119 (552)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 371
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.76 E-value=0.34 Score=49.17 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETI 150 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 150 (552)
.-.++.|.|.+|+||||||..++.... .. .-..++|++.... ..++...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~-~~-~g~~Vl~~s~E~s--~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA-TK-TNENVAIFSLEMS--AQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH-HH-SSCCEEEEESSSC--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-Hh-CCCcEEEEECCCC--HHHHHHHH
Confidence 346999999999999999999988762 11 2236788775543 34454444
No 372
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.75 E-value=0.03 Score=49.61 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 84 SQLEQVWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 84 ~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-+..+..++.. .....+.|+|++|+||||+|.++++..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 335555555543 223479999999999999999998875
No 373
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.74 E-value=0.11 Score=51.41 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=88.6
Q ss_pred CcCCcccceEEEeecCCcccCC--CCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCC-ccccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNLS--EIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLP-VGISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L 457 (552)
.+.+...++.+.+..+ +..+. .+..+.+|..+.+..+ +..++...|..+.+|+.+.+.++.++.++ ..|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3445667888887654 44442 4677888888887544 66777777889999999999999998874 578899999
Q ss_pred cEEeccCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCC
Q 048813 458 QHLDLSESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLS 503 (552)
Q Consensus 458 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~ 503 (552)
+.+.|..+ ++.++. .+.++.+|+.+.+..+ +..+...++.+..
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~ 356 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSS 356 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSS
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCC
Confidence 99999754 777764 5788899999988643 6677766565554
No 374
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.74 E-value=0.04 Score=53.70 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=36.8
Q ss_pred HhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHH
Q 048813 92 CLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLEN 145 (552)
Q Consensus 92 ~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 145 (552)
.+.....+++.+.|-||+||||+|..++... .....-..++-|+.....++..
T Consensus 12 ~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 12 IVQHDSLKWIFVGGKGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp HHTCTTCSEEEEECSTTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCHHHH
T ss_pred HhcCCCcEEEEEeCCCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCChHH
Confidence 3445567899999999999999999988776 1003445677777765544443
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.70 E-value=0.02 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~ 120 (552)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 376
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.68 E-value=0.015 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998865
No 377
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.67 E-value=0.24 Score=49.20 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=72.0
Q ss_pred ccceEEEeecCCcccC--CCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcCCccccCcCcCcEEecc
Q 048813 386 EKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNLPVGISKVVSLQHLDLS 463 (552)
Q Consensus 386 ~~l~~L~l~~~~l~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 463 (552)
..++.+.+..+ +..+ ..+..+..+..+.+..+. ..+....|.....|..+.+..+.+. ...+..+.+|+.+.+.
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEEC
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec--cccccccccccccccc
Confidence 34555555432 2222 235566777777766553 2444455666777777776654322 2245566777777776
Q ss_pred CCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 464 ESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 464 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
.+ ++.+++ .+.++.+|+.+++..+ +..++...+.++++|+.+.+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECC
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEE
Confidence 53 566653 4667778888888543 67777766777888888776
No 378
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.65 E-value=0.023 Score=48.47 Aligned_cols=27 Identities=41% Similarity=0.338 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..-.+++|.|..|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999998764
No 379
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.64 E-value=0.095 Score=50.66 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIG 151 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 151 (552)
.-.++.|.|.+|+||||+|..++.... . .-..++|++... +..++...++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a-~--~g~~Vl~fSlEm--s~~ql~~Rll 94 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL-N--DDRGVAVFSLEM--SAEQLALRAL 94 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H--TTCEEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeCCC--CHHHHHHHHH
Confidence 346999999999999999999988762 2 335677776543 3455555443
No 380
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.64 E-value=0.068 Score=52.41 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=28.6
Q ss_pred HHHHHHHhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 86 LEQVWRCLV--EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 86 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++.+.+. .+...+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3567899999999999999999987765
No 381
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.64 E-value=0.03 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+++|+|.+|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 382
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.63 E-value=0.019 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|+|.|+.|+||||+|+.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998875
No 383
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.61 E-value=0.032 Score=60.92 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=43.6
Q ss_pred CcccchHHHHHHHHHHhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECC
Q 048813 77 PTVIGLQSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSK 139 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~ 139 (552)
..++|.+..++.+...+.. .....+.++|++|+|||++|+++++.. ...-...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l---~~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI---FGDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH---HSCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh---cCCCcceEEEechh
Confidence 3478999999998887752 122369999999999999999999876 23233445555543
No 384
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.60 E-value=0.049 Score=52.77 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=36.9
Q ss_pred HhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHH
Q 048813 92 CLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLEN 145 (552)
Q Consensus 92 ~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 145 (552)
.+.....+++.+.|-||+||||+|..++... ...-..++-|+.....++..
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l---a~~g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQL---AKVRRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHHHH---TTSSSCEEEEECCSSCHHHH
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHHHH---HhCCCcEEEEECCCCCChhH
Confidence 3444556788889999999999999998876 33445677777775554443
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.58 E-value=0.038 Score=53.03 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+...+|+|.|..|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998765
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.55 E-value=0.02 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|+|.|++|+||||+|+.++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998775
No 387
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.53 E-value=0.094 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|+|-|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 388
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.51 E-value=0.023 Score=51.56 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|+.|+|||||.+.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34699999999999999999998765
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.51 E-value=0.021 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|.|.|++|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.44 E-value=0.023 Score=54.90 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998875
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.44 E-value=0.022 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.41 E-value=0.023 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.40 E-value=0.026 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|.|.|+.|+||||+|+.++...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 394
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.39 E-value=0.014 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+++|+|..|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 395
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.34 E-value=0.042 Score=57.30 Aligned_cols=44 Identities=32% Similarity=0.403 Sum_probs=35.4
Q ss_pred ccchHHHHHHHHHHhc------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV------EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
++|.++..+.+...+. .....++.++|++|+||||||+.++...
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7898888888765442 1245689999999999999999999876
No 396
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.33 E-value=0.025 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 397
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.30 E-value=0.027 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+++|.|..|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998765
No 398
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.29 E-value=0.075 Score=43.60 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=44.8
Q ss_pred EEEeecCCcc--cCCCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCC
Q 048813 390 RLSLMHNQIT--NLSEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLT 445 (552)
Q Consensus 390 ~L~l~~~~l~--~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~ 445 (552)
+++.+++.+. .+|.. -..+++.|+|++|.+..++...|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777776 66531 2246999999999999999999999999999999999653
No 399
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.26 E-value=0.053 Score=54.13 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhccc--------CCCC-eEEEEEECCcc-CHHHHHHHHHHHcCCCCc-----cc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLEST--------TNFN-YVIWVVVSKDL-RLENIQETIGEKIGLLND-----TW 161 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~ 161 (552)
.-.-++|.|..|+|||+|+.++++.. ... ++=+ .++++-+++.. ...++.+.+...=.+... ..
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 34567999999999999999998875 221 1112 66777777654 455666665542101100 00
Q ss_pred ccccHH-----HHHHHHHHHhc---cceEEEEEccccc
Q 048813 162 KNRRIE-----QKALDIFRILK---EQKFVLLLDDLWQ 191 (552)
Q Consensus 162 ~~~~~~-----~~~~~l~~~l~---~k~~LlVlDdv~~ 191 (552)
+..... .....+-++++ ++.+|+++||+-.
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111111 11223455554 6899999999854
No 400
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.26 E-value=0.13 Score=53.08 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHH
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIG 151 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 151 (552)
-.++.|.|.+|+||||+|..++.+.. ..+-..++|++.... ..++...++
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~s--~~~l~~r~~ 291 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEES--VEETAEDLI 291 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSSC--HHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHH--HhcCCcEEEEeccCC--HHHHHHHHH
Confidence 45899999999999999999887751 122346788876553 455555543
No 401
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.25 E-value=0.022 Score=50.24 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 402
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.21 E-value=0.035 Score=50.94 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
.-.+++|+|+.|+|||||.+.+..-. ....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEE
Confidence 44699999999999999999997654 233455554
No 403
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.18 E-value=0.095 Score=51.11 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc
Q 048813 89 VWRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD 140 (552)
Q Consensus 89 l~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~ 140 (552)
+++.+.. ..-.-++|+|.+|+|||+|++.+.+........+. ++++-+++.
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 3455543 44578999999999999999999887521112233 356666654
No 404
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.18 E-value=0.088 Score=61.44 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-++|-|+|+.|+||||||.++.... ++.-..++|+.+....+... ++.+|.+-+.. .+..-++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45799999999999999999988765 55667889998887777653 77777765442 234446666666
Q ss_pred HHHhcc-ceEEEEEccccc
Q 048813 174 FRILKE-QKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~~-k~~LlVlDdv~~ 191 (552)
...++. .--++|+|-|.-
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 666654 455899999843
No 405
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.12 E-value=0.019 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=16.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHIN-NKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~-~~~ 122 (552)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 406
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.11 E-value=0.046 Score=55.97 Aligned_cols=44 Identities=9% Similarity=-0.025 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHhc--cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 79 VIGLQSQLEQVWRCLV--EEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 79 ~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.+..+.+.+... .....+|.+.|+.|+||||+|++++...
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3366666666666552 2345789999999999999999999987
No 407
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.10 E-value=0.029 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998875
No 408
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.08 E-value=0.17 Score=50.28 Aligned_cols=122 Identities=16% Similarity=0.264 Sum_probs=86.1
Q ss_pred CcCCcccceEEEeecCCcccC--CCCCCCCccceeecccCCCcccCchhhcCCCCceEEEcCCCCCCcC-CccccCcCcC
Q 048813 381 DVRGWEKARRLSLMHNQITNL--SEIPTCPHLLTCFLNRNGLQMIPNDFFQFMPSLKVLNLSYSKLTNL-PVGISKVVSL 457 (552)
Q Consensus 381 ~~~~~~~l~~L~l~~~~l~~l--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L 457 (552)
.+.++..++.+.+..+. ..+ ..+..|.+|+.+.+. +.+..++...|.++.+|+.+.+..+ ++.+ ...|..+.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 34556677777775433 222 346788899998885 4577788888999999999999864 6666 4578899999
Q ss_pred cEEeccCCCCcccch-hhhcCCCCCEEecCCCcCccccchhhhcCCCCcceeee
Q 048813 458 QHLDLSESDIEELPG-ELKALVNLKCLDLEYTRNLITIPRQLISNLSRLHVLRM 510 (552)
Q Consensus 458 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~~i~~l~~L~~L~l 510 (552)
+.+.+..+ ++.+++ .+.++.+|+.+++.++. ... .. +....+|+.+.+
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~--~~~-~~-~~~~~~L~~i~i 385 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR--SQW-NA-ISTDSGLQNLPV 385 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH--HHH-HT-CBCCCCC-----
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCce--eeh-hh-hhccCCCCEEEe
Confidence 99999754 777764 58899999999998764 222 22 667777877776
No 409
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.08 E-value=0.027 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINN 120 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~ 120 (552)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999999884
No 410
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.06 E-value=0.03 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+. .+++|+|..|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998764
No 411
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.02 E-value=0.033 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+++|+|..|+||||+++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998876
No 412
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.98 E-value=0.034 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998765
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.98 E-value=0.066 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 414
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.98 E-value=0.017 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+..+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 415
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.97 E-value=0.03 Score=50.28 Aligned_cols=23 Identities=35% Similarity=0.229 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
.+++|+|..|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999875
No 416
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.97 E-value=0.21 Score=50.57 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=35.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIG 151 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 151 (552)
.-.++.|.|.+|+||||+|..++.... ...-..++|++...+ ..++...++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g~~vl~~slE~~--~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA--LKEGVGVGIYSLEMP--AAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSSC--HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEECCCC--HHHHHHHHH
Confidence 346899999999999999999887752 122346788776543 455555544
No 417
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.95 E-value=0.067 Score=57.87 Aligned_cols=46 Identities=28% Similarity=0.342 Sum_probs=36.0
Q ss_pred CcccchHHHHHHHHHHhcc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE-------------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+.|.++.+++|.+.+.- ...+-|.++|++|.|||.+|+++++..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh
Confidence 3477899988888776531 123457899999999999999999976
No 418
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.95 E-value=0.12 Score=61.10 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-+++.|+|.+|+||||||.+++... ...-..++|++.....+.. .++.++.+.... ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~---a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 45799999999999999999998876 2333578898877766643 255666543221 234455555555
Q ss_pred HHHhc-cceEEEEEccccc
Q 048813 174 FRILK-EQKFVLLLDDLWQ 191 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~~ 191 (552)
.+..+ .+.-++|+|.+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 54443 3456999999854
No 419
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.93 E-value=0.019 Score=60.51 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=35.6
Q ss_pred CCcccchHHHHHHHHHHhccCCCe-----------EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 76 EPTVIGLQSQLEQVWRCLVEEPAG-----------IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 76 ~~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.++|.+..+..+...+..+..+ -|.++|.+|+|||+||+++++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 356889998777765555444211 58899999999999999998764
No 420
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.92 E-value=0.028 Score=51.19 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997754
No 421
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.90 E-value=0.042 Score=51.62 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
.-.+++|+|+.|+|||||++.++.-. ....+.+++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~ 67 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL----KPSSGRILF 67 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEE
Confidence 44699999999999999999997754 233455544
No 422
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.88 E-value=0.11 Score=60.76 Aligned_cols=88 Identities=19% Similarity=0.139 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHHHcCCCCccc---ccccHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGEKIGLLNDTW---KNRRIEQKALDI 173 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 173 (552)
.-+++-|+|.+|+||||||.+++... ...-..++|++.....+.. .++.++.+.+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~---~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH---HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 45799999999999999999988775 2234578999888776653 256666543322 233455555555
Q ss_pred HHHhc-cceEEEEEcccccc
Q 048813 174 FRILK-EQKFVLLLDDLWQR 192 (552)
Q Consensus 174 ~~~l~-~k~~LlVlDdv~~~ 192 (552)
....+ .+.-++|+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 54443 34569999998543
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.88 E-value=0.039 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 424
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.87 E-value=0.033 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 425
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.84 E-value=0.044 Score=51.16 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
.-.+++|+|..|+|||||.+.++.-. ....+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 45699999999999999999997754 223455554
No 426
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.78 E-value=0.15 Score=51.50 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD 140 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~ 140 (552)
.-.++.|.|.+|+||||+|..++.+. ... -..++|++...+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~-a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM-SDN--DDVVNLHSLEMG 236 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH-HHT--TCEEEEECSSSC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH-HHc--CCEEEEEECCCC
Confidence 34689999999999999999988876 222 346777765543
No 427
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.75 E-value=0.048 Score=51.00 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44699999999999999999998764
No 428
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.71 E-value=0.08 Score=49.52 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD 140 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~ 140 (552)
++|+|.|-||+||||+|..++... ...-..++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l---a~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL---HAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH---HTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH---HHCCCcEEEEcCCCC
Confidence 678889999999999999988876 233345677776643
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.70 E-value=0.038 Score=55.55 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 430
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.67 E-value=0.05 Score=50.26 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
.-.+++|+|..|+|||||++.++.-. ....+.+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 34699999999999999999997764 233455554
No 431
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.66 E-value=0.038 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999998765
No 432
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.64 E-value=0.045 Score=50.19 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|.|+.|+||||+|+.++...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 433
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.60 E-value=0.067 Score=47.08 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEEC
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVS 138 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s 138 (552)
..|-|++-.|.||||+|-..+-+. -++--.+.++..-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFI 65 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEee
Confidence 466666666799999998887776 3444455666443
No 434
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.55 E-value=0.14 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|.|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998876
No 435
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.55 E-value=0.11 Score=52.29 Aligned_cols=95 Identities=9% Similarity=0.106 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccC--CCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-----ccccc---
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTT--NFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDT-----WKNRR--- 165 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-----~~~~~--- 165 (552)
.-.-++|.|..|+|||+|+..++++. ...+ .-+.++++-+++.. ...++.+++...=.+.... .+...
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r 229 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVER 229 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHH
Confidence 34577899999999999999999886 2211 12467777777654 4566777766532111100 00101
Q ss_pred --HHHHHHHHHHHhc---cceEEEEEcccccc
Q 048813 166 --IEQKALDIFRILK---EQKFVLLLDDLWQR 192 (552)
Q Consensus 166 --~~~~~~~l~~~l~---~k~~LlVlDdv~~~ 192 (552)
.......+-++++ ++.+|+++||+...
T Consensus 230 ~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 230 IVTPRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 1111223445554 58999999998543
No 436
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.50 E-value=0.073 Score=58.11 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=37.2
Q ss_pred CcccchHHHHHHHHHHhcc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 77 PTVIGLQSQLEQVWRCLVE---------EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 77 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..++|.+..++.+...+.. .....+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4478999999988877642 123478999999999999999998875
No 437
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.49 E-value=0.069 Score=48.12 Aligned_cols=38 Identities=26% Similarity=0.138 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD 140 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~ 140 (552)
.|.+.|.||+||||+|..++... . ...+ .+..+.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l-~-~~G~-~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ-L-RQGV-RVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH-H-HTTC-CEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-H-HCCC-CEEEEEeCCC
Confidence 47889999999999998888876 2 2233 3455555543
No 438
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.49 E-value=0.048 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|+|.|..|+||||+|+.++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998875
No 439
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.49 E-value=0.068 Score=50.70 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCc
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKD 140 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~ 140 (552)
.++|+|.|-||+||||+|..++.... ..-..++-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La---~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA---EMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH---HCCCeEEEEecCCC
Confidence 47888899999999999999887762 22335666776643
No 440
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.47 E-value=0.041 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
.-.+++|+|..|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999874
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.47 E-value=0.047 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+++|+|..|+||||+++.++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4599999999999999999998876
No 442
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.45 E-value=0.038 Score=50.88 Aligned_cols=35 Identities=34% Similarity=0.342 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
.-.+++|+|..|+|||||.+.++.-. ....+.+++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 34699999999999999999998754 233455554
No 443
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.44 E-value=0.065 Score=50.26 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
..-.+++|+|..|+|||||++.++.-. ....+.+++
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~p~~G~I~~ 78 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY----QPTGGKVLL 78 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEE
Confidence 345699999999999999999998764 233455554
No 444
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.44 E-value=0.033 Score=50.17 Aligned_cols=26 Identities=38% Similarity=0.631 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997764
No 445
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.43 E-value=0.048 Score=50.82 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999998765
No 446
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.42 E-value=0.046 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998775
No 447
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.41 E-value=0.061 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...+|+|+|+.|+|||||++.++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 44799999999999999999999886
No 448
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.38 E-value=0.099 Score=49.71 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHHHHHHHHH
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLENIQETIGE 152 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 152 (552)
.-.+++|.|.+|+|||||++.++... ... .-..++|+.... ...++...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~-~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW-GTA-MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-HHT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHH-cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 44699999999999999999998876 222 122466665443 33444444433
No 449
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.37 E-value=0.039 Score=51.37 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
.-.+++|+|..|+|||||.+.++.-. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL----KADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 34699999999999999999998764 223455554
No 450
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.36 E-value=0.045 Score=51.07 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
+.-.+++|+|..|+|||||++.++.-. ....+.+++
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 83 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIII 83 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEE
Confidence 345699999999999999999998764 223455554
No 451
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.34 E-value=0.044 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
.-.+++|+|..|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999875
No 452
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.33 E-value=0.041 Score=50.26 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34699999999999999999998764
No 453
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.32 E-value=0.15 Score=51.47 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHhcc-CCCeEEEEEcCCCCcHHHHH-HHHHhhhhcccCCCC-eEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-----
Q 048813 90 WRCLVE-EPAGIVGLYGMGGVGKTTLL-THINNKFLESTTNFN-YVIWVVVSKDL-RLENIQETIGEKIGLLNDT----- 160 (552)
Q Consensus 90 ~~~L~~-~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----- 160 (552)
++.|.. ..-.-++|.|..|+|||+|| ..+.+.. .-+ .++++-+++.. ...++.+.+...=.+....
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 153 IDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred cccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 344432 34467899999999999996 5777764 245 45778888765 4556677766532222110
Q ss_pred cccccHHH-----HHHHHHHHh--ccceEEEEEcccccc
Q 048813 161 WKNRRIEQ-----KALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 161 ~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
.+...... ....+-+++ +++.+|+++||+...
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 01111111 112233444 468999999998543
No 454
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.30 E-value=0.049 Score=50.23 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..-.+++|+|..|+|||||.+.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345799999999999999999998764
No 455
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.27 E-value=0.14 Score=51.79 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHhhhhcccCCCC-eEEEEEECCcc-CHHHHHHHHHHHcCCCC----------ccccc
Q 048813 97 PAGIVGLYGMGGVGKTTLL-THINNKFLESTTNFN-YVIWVVVSKDL-RLENIQETIGEKIGLLN----------DTWKN 163 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~----------~~~~~ 163 (552)
.-.-++|.|..|+|||+|| ..+.+.. .-+ .++++-+++.. ...++.+.+...=.+.. +....
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3457899999999999996 5777754 245 46778888764 34556665544211110 00001
Q ss_pred ccHHHHHHHHHHHh--ccceEEEEEccccc
Q 048813 164 RRIEQKALDIFRIL--KEQKFVLLLDDLWQ 191 (552)
Q Consensus 164 ~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 191 (552)
.........+-+++ +++.+|+++||+..
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 11111222233333 57899999999753
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.26 E-value=0.049 Score=47.96 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+.|.|.|..|+||||||.++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998764
No 457
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.26 E-value=0.052 Score=51.70 Aligned_cols=27 Identities=15% Similarity=0.221 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..-.+++|+|..|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999998764
No 458
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.23 E-value=0.18 Score=51.04 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=56.4
Q ss_pred HHHhcc-CCCeEEEEEcCCCCcHHHHH-HHHHhhhhcccCCCC-eEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-----
Q 048813 90 WRCLVE-EPAGIVGLYGMGGVGKTTLL-THINNKFLESTTNFN-YVIWVVVSKDL-RLENIQETIGEKIGLLNDT----- 160 (552)
Q Consensus 90 ~~~L~~-~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----- 160 (552)
++.|.. ..-.-++|.|..|+|||+|| ..+.+.. .-+ .++++-+++.. ...++.+.+...=.+....
T Consensus 166 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 166 IDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred cccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 344432 34467999999999999996 5777753 245 45778888765 4556666666421111100
Q ss_pred cccccHHH-----HHHHHHHHh--ccceEEEEEccccc
Q 048813 161 WKNRRIEQ-----KALDIFRIL--KEQKFVLLLDDLWQ 191 (552)
Q Consensus 161 ~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv~~ 191 (552)
.+...... ....+-+++ +++.+|+++||+..
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 01111111 112233444 46899999999854
No 459
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.22 E-value=0.31 Score=49.19 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCCCcHHHHH-HHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHHHHHcCCCCccc-----ccccHHH
Q 048813 96 EPAGIVGLYGMGGVGKTTLL-THINNKFLESTTNFNYVIWVVVSKDL-RLENIQETIGEKIGLLNDTW-----KNRRIEQ 168 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~~~~ 168 (552)
..-.-++|.|..|+|||+|| ..+.+.. ..-..++++-+++.. ...++.+.+...=.+..... +......
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 34467899999999999997 5666642 222246788888765 45667777655322211100 0111111
Q ss_pred -----HHHHHHHHh--ccceEEEEEcccccc
Q 048813 169 -----KALDIFRIL--KEQKFVLLLDDLWQR 192 (552)
Q Consensus 169 -----~~~~l~~~l--~~k~~LlVlDdv~~~ 192 (552)
....+-+++ +++.+|+++||+...
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 111233433 578999999998543
No 460
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.22 E-value=0.041 Score=50.27 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4569999999999999999998764
No 461
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.15 E-value=0.051 Score=50.50 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
.-.+++|+|..|+|||||.+.++.-. ....+.+++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI----KPSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 44699999999999999999997754 233455554
No 462
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.13 E-value=0.085 Score=46.95 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=31.8
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHH
Q 048813 99 GIVGLY-GMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLEN 145 (552)
Q Consensus 99 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 145 (552)
++|+|+ +-||+||||+|..++.... ..-..++-|+.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la---~~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS---RSGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH---HCCCeEEEEECCCCCCHHH
Confidence 678887 6899999999999888762 2334577777775554443
No 463
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.13 E-value=0.052 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44699999999999999999998764
No 464
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.12 E-value=0.13 Score=46.68 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
...|.|-|+.|+||||+++.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999886
No 465
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.12 E-value=0.16 Score=46.42 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
..+|.|.|+.|+||||+++.+..... ...+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 46899999999999999999998862 3345534433
No 466
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.11 E-value=0.16 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|+|-|..|+||||+++.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999887
No 467
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.10 E-value=0.054 Score=47.76 Aligned_cols=25 Identities=36% Similarity=0.394 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999988764
No 468
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.08 E-value=0.063 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..-.+++|+|+.|+|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 445799999999999999999998765
No 469
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.07 E-value=0.057 Score=53.17 Aligned_cols=27 Identities=22% Similarity=0.048 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....+++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999998754
No 470
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.07 E-value=0.047 Score=50.51 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 471
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.03 E-value=0.047 Score=51.09 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEE
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWV 135 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv 135 (552)
.-.+++|+|..|+|||||.+.++.-. ....+.+++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~I~~ 66 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI----EPTSGDVLY 66 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEE
Confidence 44699999999999999999997754 233455554
No 472
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.99 E-value=0.11 Score=45.57 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999987753
No 473
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.98 E-value=0.16 Score=51.69 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 81 GLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
+....++.+...+.++. ..+.|.|.+|+||||++.++....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34445555555555443 489999999999999999988876
No 474
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.97 E-value=0.11 Score=47.83 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccCHHH
Q 048813 101 VGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLRLEN 145 (552)
Q Consensus 101 i~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 145 (552)
|+|.|-||+||||+|..++... ...-..++-|+.....++..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l---a~~g~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM---ASDYDKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH---TTTCSCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH---HHCCCeEEEEeCCCCcChHH
Confidence 6679999999999999998887 23335677787776555543
No 475
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.95 E-value=0.32 Score=49.69 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=40.5
Q ss_pred HHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCccC-HHHHHHHH
Q 048813 90 WRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDLR-LENIQETI 150 (552)
Q Consensus 90 ~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 150 (552)
++.|.. ..-.-++|.|..|+|||+|++.+++.. +-+.++++-+++... ..++.+.+
T Consensus 218 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 218 IDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 344432 344689999999999999999987753 235788888887654 55666664
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.95 E-value=0.049 Score=51.34 Aligned_cols=26 Identities=42% Similarity=0.520 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 477
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.92 E-value=0.049 Score=50.52 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 478
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.92 E-value=0.054 Score=51.12 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-.++.|+|.+|+||||||..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999988654
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.89 E-value=0.079 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..+|.|+|.+|+||||+|..++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988876
No 480
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.85 E-value=0.18 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|.|-|+.|+||||+++.+++..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999886
No 481
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.82 E-value=0.069 Score=45.14 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-|.++|.+|+|||||...+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987653
No 482
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.79 E-value=0.06 Score=48.81 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.-++|.|++|+||||+|+.++...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 483
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.75 E-value=0.31 Score=49.90 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=40.2
Q ss_pred HHHhcc-CCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCCCeEEEEEECCcc-CHHHHHHHH
Q 048813 90 WRCLVE-EPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNFNYVIWVVVSKDL-RLENIQETI 150 (552)
Q Consensus 90 ~~~L~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 150 (552)
++.|.. ..-.-++|.|..|+|||+|+.++++.. +-+.++++-+++.. ...++.+++
T Consensus 223 ID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 223 IDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 455543 445789999999999999999998864 23678888888653 455555554
No 484
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.72 E-value=0.064 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 485
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.71 E-value=0.07 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998875
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.71 E-value=0.061 Score=47.70 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 487
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.67 E-value=0.053 Score=47.42 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998764
No 488
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.63 E-value=0.075 Score=50.68 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
..-.+++|+|..|+|||||++.+..-+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345799999999999999999997754
No 489
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.61 E-value=0.22 Score=50.46 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=57.8
Q ss_pred HHHhcc-CCCeEEEEEcCCCCcHHHHH-HHHHhhhhcc----cCCCC-eEEEEEECCcc-CHHHHHHHHHHHcCCCCcc-
Q 048813 90 WRCLVE-EPAGIVGLYGMGGVGKTTLL-THINNKFLES----TTNFN-YVIWVVVSKDL-RLENIQETIGEKIGLLNDT- 160 (552)
Q Consensus 90 ~~~L~~-~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~----~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~- 160 (552)
++.|.. ..-.-++|+|..|+|||+|| ..+.+.. .. .++-+ .++++-+++.. ...++.+.+...=.+....
T Consensus 153 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 153 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 344432 34467899999999999995 5677765 21 12344 57788888765 4556676666532111100
Q ss_pred ----cccccHHH-----HHHHHHHHh--ccceEEEEEccccc
Q 048813 161 ----WKNRRIEQ-----KALDIFRIL--KEQKFVLLLDDLWQ 191 (552)
Q Consensus 161 ----~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv~~ 191 (552)
.+...... ....+-+++ +++.+|+++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 01111111 112233444 46899999999854
No 490
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.59 E-value=0.065 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999987653
No 491
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.59 E-value=0.047 Score=51.02 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 97 PAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 97 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
....|+|.|..|+||||+|+.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987764
No 492
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.58 E-value=0.18 Score=49.23 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhhccc--CCCCeEEEEEECCccCHHH
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKFLEST--TNFNYVIWVVVSKDLRLEN 145 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~ 145 (552)
....++...|-||+||||+|..++-.. . ..-..++-|+.....++..
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l---A~~~~G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM---ALSQPNKQFLLISTDPAHNLSD 64 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH---HHHCTTSCEEEEECCSSCCHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH---HHhcCCCeEEEEECCCCCCHHH
Confidence 334566667999999999999988776 3 3445677777665555554
No 493
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.55 E-value=0.076 Score=47.30 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 81 GLQSQLEQVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 81 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
|++...+.+.+.......--|+|+|.+|+|||||...+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 344444444444444455678999999999999998887653
No 494
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.55 E-value=0.062 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998764
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.53 E-value=0.091 Score=47.54 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 96 EPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 96 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.....|.|.|+.|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 496
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.51 E-value=0.22 Score=49.71 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=26.8
Q ss_pred HHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 88 QVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 88 ~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+...+ ...-.+++|+|+.|+||||+.+.+....
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 344443 4555799999999999999999998875
No 497
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.50 E-value=0.069 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 048813 100 IVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 100 vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 498
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.45 E-value=0.61 Score=42.43 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=49.5
Q ss_pred HHHHHhccCCCeEEEEEcCCCCcHHHHHHHHHhhhhcccCCC-CeEEEEEECCccCHHHHHHHHHHHcCCCC--------
Q 048813 88 QVWRCLVEEPAGIVGLYGMGGVGKTTLLTHINNKFLESTTNF-NYVIWVVVSKDLRLENIQETIGEKIGLLN-------- 158 (552)
Q Consensus 88 ~l~~~L~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------- 158 (552)
++...+..+ +.+.|.|..|+||||+.....-+.....+.. ...+.+..........+.+.+...++...
T Consensus 68 ~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~ 145 (235)
T 3llm_A 68 EILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSV 145 (235)
T ss_dssp HHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEE
T ss_pred HHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEee
Confidence 333444434 6899999999999986655433221222222 22333333332233344555554443210
Q ss_pred ----------cccccccHHHHHHHHHHHhccceEEEEEccccc
Q 048813 159 ----------DTWKNRRIEQKALDIFRILKEQKFVLLLDDLWQ 191 (552)
Q Consensus 159 ----------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 191 (552)
..+.-.....+...+.+.+.+- -++|+|.++.
T Consensus 146 ~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 146 RFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp TTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred chhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 0011123444445554434333 3788999865
No 499
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.43 E-value=0.064 Score=50.03 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 048813 98 AGIVGLYGMGGVGKTTLLTHINNK 121 (552)
Q Consensus 98 ~~vi~I~G~gGiGKTtLA~~v~~~ 121 (552)
-.+++|+|..|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 500
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.41 E-value=0.078 Score=47.23 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 048813 99 GIVGLYGMGGVGKTTLLTHINNKF 122 (552)
Q Consensus 99 ~vi~I~G~gGiGKTtLA~~v~~~~ 122 (552)
.+|+|.|+.|+||||+|+.++...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
Done!