BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048817
(613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|D Chain D, Crystal Structure Of Myc-Max Recognizing Dna
Length = 88
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 445 HVEAERQRREKLNQRFYALRAVVPNISKMDKAS---LLGDAIAYINELQAKLKVMEAERE 501
H ERQRR +L + F+ALR +P + +KA +L A AYI +QA+ + + +E +
Sbjct: 10 HNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69
Query: 502 NL 503
L
Sbjct: 70 LL 71
>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
Length = 87
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 444 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAIAYINELQAKLKVMEAERE 501
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K+ ++ + +
Sbjct: 7 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQDID 66
Query: 502 NL 503
+L
Sbjct: 67 DL 68
>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
Length = 83
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 444 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAIAYINELQAKLKVMEAERE 501
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K + + +
Sbjct: 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64
Query: 502 NL 503
+L
Sbjct: 65 DL 66
>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
Length = 76
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 444 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAIAYINELQAKLKVMEAERE 501
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K + + +
Sbjct: 4 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 63
Query: 502 NL 503
+L
Sbjct: 64 DL 65
>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
BHLHZ DOMAIN
Length = 86
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 444 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAIAYINELQAKLKVMEAERE 501
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K + + +
Sbjct: 6 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 65
Query: 502 NL 503
+L
Sbjct: 66 DL 67
>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
New Insights Into Mechanisms Of Transcriptional Control
Length = 80
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 444 NHVEAERQRREKLNQRFYALRAVVPNIS--KMDKASLLGDAIAYINELQAKLKVMEAERE 501
+H ER+RR+ + F++LR VP++ K +A +L A YI ++ K + + +
Sbjct: 15 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 74
Query: 502 NL 503
+L
Sbjct: 75 DL 76
>pdb|1AN4|A Chain A, Structure And Function Of The BHLHZ DOMAIN OF USF
pdb|1AN4|B Chain B, Structure And Function Of The BHLHZ DOMAIN OF USF
Length = 65
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 445 HVEAERQRREKLNQRFYALRAVVPNISK------MDKASLLGDAIAYINELQ 490
H E ER+RR+K+N L ++P+ S K +L A YI EL+
Sbjct: 9 HNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 328 GIRNGVHGFSWGNVQGVKQGIATEI-----FGSQTNNLQELVNGVREDFRINHYQSQKPM 382
GIRN HG ++ +VQ V G A + F + LV G RI ++ +
Sbjct: 113 GIRN--HGAAF-DVQAVXSGFAYAVATADSFIRSGQHRTALVIGAETFSRILDFKDRTTC 169
Query: 383 QMQIDFSGA-----TSRPNVIARPLNADSEHSDVEASCRDERTGTV 423
+ D +GA + P V+A L+AD HS++ + + G V
Sbjct: 170 VLFGDGAGAVILQASDEPGVLASALHADGSHSNILCTPGNVNGGVV 215
>pdb|4ATI|A Chain A, Mitf:m-Box Complex
pdb|4ATI|B Chain B, Mitf:m-Box Complex
pdb|4ATK|A Chain A, Mitf:e-Box Complex
pdb|4ATK|B Chain B, Mitf:e-Box Complex
Length = 118
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 444 NHVEAERQRREKLNQRFYALRAVVPNISKMD----KASLLGDAIAYINEL---QAKLKVM 496
NH ER+RR +N R L ++P + D K ++L ++ YI +L Q + K +
Sbjct: 30 NHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89
Query: 497 EAERENLSGNSRDL 510
E ++ L +R L
Sbjct: 90 ENRQKKLEHANRHL 103
>pdb|4F3L|B Chain B, Crystal Structure Of The Heterodimeric Clock:bmal1
Transcriptional Activator Complex
Length = 387
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 445 HVEAERQRREKLNQRFYALRAVVPNIS----KMDKASLLGDAIAYINELQ 490
H + E++RR+K+N L ++VP + K+DK ++L A+ ++ L+
Sbjct: 17 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66
>pdb|4F23|A Chain A, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|B Chain B, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|C Chain C, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
Length = 515
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 325 AFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQ---------TNNLQELVNGVREDFRINH 375
+PG+ NG +GF N QG GIA + +Q NN+ E +NG + R
Sbjct: 347 GWPGLINGWYGFQHQNEQGT--GIAADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEF 404
Query: 376 YQSQKPMQMQID 387
Q +K + M D
Sbjct: 405 NQVEKRINMIAD 416
>pdb|4FIU|A Chain A, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|B Chain B, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|C Chain C, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
Length = 515
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 325 AFPGIRNGVHGFSWGNVQGVKQGIATEIFGSQ---------TNNLQELVNGVREDFRINH 375
+PG+ NG +GF N QG GIA + +Q NN+ E +NG + R
Sbjct: 347 GWPGLINGWYGFQHQNEQGT--GIAADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEF 404
Query: 376 YQSQKPMQMQID 387
Q +K + M D
Sbjct: 405 NQVEKRINMIAD 416
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 31/125 (24%)
Query: 160 MYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLI-------- 211
+YF+ G GGP H+ + C+ L K ++T++ +
Sbjct: 150 LYFAVYDGHGGPAAADFCHTHM----------EKCIMDLLPKEKNLETLLTLAFLEIDKA 199
Query: 212 -------STDAGVVELGSVRSVP---ESLELVHSIRATFSSNSSLATV-KPMAVALPVTS 260
S DA ++ G+ +V + +ELV + + S + L KPM + + T
Sbjct: 200 FSSHARLSADATLLTSGTTATVALLRDGIELV--VASVGDSRAILCRKGKPMKLTIDHTP 257
Query: 261 EKKDE 265
E+KDE
Sbjct: 258 ERKDE 262
>pdb|1W45|A Chain A, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus.
pdb|1W45|B Chain B, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus
Length = 327
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 343 GVKQGIATEIFGSQT-NNLQELVNGVREDFRINHYQSQKPMQMQIDFSGATSR 394
G K+G+ EI S+T N L+E++ ED Y S +Q D SG R
Sbjct: 110 GTKEGVIIEILASRTKNQLREIMKAYEED-----YGSSLEEDIQADTSGYLER 157
>pdb|1W3W|A Chain A, The 2.1 Angstroem Resolution Structure Of Annexin A8
Length = 327
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 343 GVKQGIATEIFGSQT-NNLQELVNGVREDFRINHYQSQKPMQMQIDFSGATSR 394
G K+G+ EI S+T N L+E++ ED Y S +Q D SG R
Sbjct: 110 GTKEGVIIEILASRTKNQLREIMKAYEED-----YGSSLEEDIQADTSGYLER 157
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 31/125 (24%)
Query: 160 MYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLI-------- 211
+YF+ G GGP H+ + C+ L K ++T++ +
Sbjct: 36 LYFAVYDGHGGPAAADFCHTHM----------EKCIMDLLPKEKNLETLLTLAFLEIDKA 85
Query: 212 -------STDAGVVELGSVRSVP---ESLELVHSIRATFSSNSSLATV-KPMAVALPVTS 260
S DA ++ G+ +V + +ELV + + S + L KPM + + T
Sbjct: 86 FSSHARLSADATLLTSGTTATVALLRDGIELV--VASVGDSRAILCRKGKPMKLTIDHTP 143
Query: 261 EKKDE 265
E+KDE
Sbjct: 144 ERKDE 148
>pdb|4H10|A Chain A, Intermolecular Recognition Revealed By The Complex
Structure Of Human Clock-bmal1 Basic Helix-loop-helix
Domains With E-box Dna
Length = 73
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 445 HVEAERQRREKLNQRFYALRAVVPNIS----KMDKASLLGDAIAYINELQA 491
H + E++RR+K+N L ++VP + K+DK ++L A+ ++ L+
Sbjct: 13 HSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,217,135
Number of Sequences: 62578
Number of extensions: 692695
Number of successful extensions: 1380
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1378
Number of HSP's gapped (non-prelim): 22
length of query: 613
length of database: 14,973,337
effective HSP length: 105
effective length of query: 508
effective length of database: 8,402,647
effective search space: 4268544676
effective search space used: 4268544676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)