Query 048817
Match_columns 613
No_of_seqs 317 out of 1348
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 13:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14215 bHLH-MYC_N: bHLH-MYC 100.0 3.8E-54 8.2E-59 412.8 12.6 163 52-240 1-163 (163)
2 cd00083 HLH Helix-loop-helix d 99.2 2E-11 4.4E-16 97.5 5.6 52 442-493 5-59 (60)
3 smart00353 HLH helix loop heli 99.2 3.9E-11 8.4E-16 93.9 6.2 49 446-494 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.2 2.9E-11 6.3E-16 95.7 4.9 49 442-490 2-55 (55)
5 KOG1318 Helix loop helix trans 98.6 3.2E-08 6.9E-13 106.9 5.8 56 440-495 232-291 (411)
6 KOG1319 bHLHZip transcription 98.4 3.8E-07 8.2E-12 88.2 4.7 64 442-505 63-133 (229)
7 KOG2483 Upstream transcription 98.1 8.6E-06 1.9E-10 82.7 8.4 67 437-503 55-124 (232)
8 KOG4304 Transcriptional repres 98.0 4.9E-06 1.1E-10 85.6 3.7 54 441-494 32-93 (250)
9 KOG3561 Aryl-hydrocarbon recep 97.9 1.2E-05 2.6E-10 93.6 5.4 51 442-492 21-75 (803)
10 cd04895 ACT_ACR_1 ACT domain-c 97.8 0.0002 4.4E-09 60.3 9.6 63 538-600 3-65 (72)
11 cd04897 ACT_ACR_3 ACT domain-c 97.8 0.00017 3.8E-09 61.2 9.2 55 538-592 3-57 (75)
12 cd04896 ACT_ACR-like_3 ACT dom 97.4 0.00088 1.9E-08 56.9 9.0 64 538-602 2-71 (75)
13 cd04927 ACT_ACR-like_2 Second 97.4 0.0016 3.5E-08 55.0 9.9 66 537-602 1-70 (76)
14 KOG2588 Predicted DNA-binding 97.3 0.00013 2.9E-09 85.3 3.8 67 438-504 273-340 (953)
15 KOG0561 bHLH transcription fac 97.3 0.00015 3.2E-09 75.1 2.9 53 445-497 64-118 (373)
16 KOG3960 Myogenic helix-loop-he 97.3 0.00055 1.2E-08 69.5 6.6 63 441-503 118-182 (284)
17 cd04900 ACT_UUR-like_1 ACT dom 97.2 0.0045 9.7E-08 51.5 10.2 53 538-590 3-56 (73)
18 KOG4029 Transcription factor H 96.9 0.00082 1.8E-08 68.3 4.2 57 441-497 109-169 (228)
19 cd04925 ACT_ACR_2 ACT domain-c 96.7 0.015 3.3E-07 48.7 9.8 64 538-601 2-70 (74)
20 cd04899 ACT_ACR-UUR-like_2 C-t 96.6 0.018 4E-07 46.7 9.5 54 538-591 2-55 (70)
21 PLN03217 transcription factor 96.6 0.0064 1.4E-07 52.3 6.4 52 454-505 20-77 (93)
22 PF13740 ACT_6: ACT domain; PD 96.2 0.047 1E-06 45.9 9.5 68 536-606 2-69 (76)
23 cd04926 ACT_ACR_4 C-terminal 96.0 0.076 1.7E-06 44.1 10.0 48 538-585 3-50 (72)
24 cd04928 ACT_TyrKc Uncharacteri 95.8 0.077 1.7E-06 44.3 9.0 62 538-601 3-65 (68)
25 cd04893 ACT_GcvR_1 ACT domains 95.8 0.09 2E-06 44.3 9.6 66 537-605 2-67 (77)
26 cd04873 ACT_UUR-ACR-like ACT d 95.7 0.15 3.3E-06 40.8 10.3 54 538-591 2-55 (70)
27 PF13291 ACT_4: ACT domain; PD 95.6 0.049 1.1E-06 45.8 7.4 51 536-586 6-58 (80)
28 cd04875 ACT_F4HF-DF N-terminal 95.6 0.082 1.8E-06 43.8 8.5 69 538-606 1-70 (74)
29 PF01842 ACT: ACT domain; Int 95.6 0.12 2.6E-06 40.9 9.2 62 538-602 2-64 (66)
30 cd04869 ACT_GcvR_2 ACT domains 95.5 0.12 2.6E-06 43.2 9.3 66 539-606 2-73 (81)
31 PRK05007 PII uridylyl-transfer 95.5 0.19 4.2E-06 60.8 14.5 66 535-600 807-875 (884)
32 cd04872 ACT_1ZPV ACT domain pr 95.4 0.076 1.6E-06 45.7 7.9 69 537-606 2-70 (88)
33 PRK00194 hypothetical protein; 95.0 0.13 2.8E-06 44.2 8.2 70 536-606 3-72 (90)
34 cd04870 ACT_PSP_1 CT domains f 94.6 0.27 5.8E-06 41.0 8.7 66 539-606 2-67 (75)
35 cd04887 ACT_MalLac-Enz ACT_Mal 94.3 0.25 5.5E-06 40.4 7.9 62 539-602 2-64 (74)
36 PRK01759 glnD PII uridylyl-tra 93.6 0.25 5.5E-06 59.6 9.3 67 535-601 782-851 (854)
37 KOG3910 Helix loop helix trans 93.4 0.037 8.1E-07 61.2 1.8 57 440-496 525-585 (632)
38 cd04886 ACT_ThrD-II-like C-ter 93.1 0.51 1.1E-05 37.5 7.6 61 539-601 1-66 (73)
39 PRK00275 glnD PII uridylyl-tra 93.0 0.42 9.2E-06 58.0 9.9 69 535-603 813-885 (895)
40 cd04888 ACT_PheB-BS C-terminal 92.9 0.42 9.2E-06 39.1 7.0 64 538-602 2-66 (76)
41 KOG3560 Aryl-hydrocarbon recep 92.6 0.11 2.4E-06 58.3 3.9 39 449-487 33-75 (712)
42 PRK03381 PII uridylyl-transfer 92.6 0.61 1.3E-05 55.8 10.4 57 536-592 707-763 (774)
43 KOG4447 Transcription factor T 92.6 0.063 1.4E-06 51.1 1.7 54 441-494 78-133 (173)
44 PRK04374 PII uridylyl-transfer 92.5 0.69 1.5E-05 56.0 10.7 69 535-603 795-866 (869)
45 PRK03381 PII uridylyl-transfer 92.2 0.78 1.7E-05 54.9 10.6 70 534-603 597-666 (774)
46 cd04880 ACT_AAAH-PDT-like ACT 92.0 1.1 2.3E-05 37.1 8.4 66 540-605 3-70 (75)
47 PRK05092 PII uridylyl-transfer 91.6 0.96 2.1E-05 55.2 10.8 70 535-604 842-915 (931)
48 COG2844 GlnD UTP:GlnB (protein 91.5 0.74 1.6E-05 54.5 9.1 82 526-607 779-862 (867)
49 PRK03059 PII uridylyl-transfer 91.0 1.1 2.5E-05 54.1 10.4 49 535-583 785-833 (856)
50 cd02116 ACT ACT domains are co 90.9 1.5 3.3E-05 31.5 7.4 35 539-573 1-35 (60)
51 cd04876 ACT_RelA-SpoT ACT dom 90.7 2.4 5.2E-05 32.2 8.7 47 539-585 1-48 (71)
52 TIGR01693 UTase_glnD [Protein- 90.5 1.3 2.9E-05 53.4 10.4 69 535-603 667-740 (850)
53 cd04877 ACT_TyrR N-terminal AC 90.2 0.83 1.8E-05 37.9 6.0 59 538-601 2-60 (74)
54 TIGR01693 UTase_glnD [Protein- 90.2 1.1 2.4E-05 54.0 9.4 65 536-600 779-846 (850)
55 PRK13011 formyltetrahydrofolat 90.1 1.8 3.9E-05 45.8 9.7 71 536-606 7-77 (286)
56 PRK05007 PII uridylyl-transfer 90.0 1.7 3.6E-05 52.9 10.7 76 526-601 689-770 (884)
57 cd04905 ACT_CM-PDT C-terminal 89.4 3.1 6.6E-05 34.9 8.9 65 538-604 3-68 (80)
58 cd04881 ACT_HSDH-Hom ACT_HSDH_ 89.3 2.9 6.4E-05 33.6 8.5 47 538-584 2-50 (79)
59 PRK01759 glnD PII uridylyl-tra 89.0 2.3 4.9E-05 51.6 10.7 76 526-601 665-746 (854)
60 cd04903 ACT_LSD C-terminal ACT 89.0 2.3 4.9E-05 33.6 7.5 61 538-603 1-63 (71)
61 PRK04435 hypothetical protein; 89.0 2.6 5.5E-05 40.3 9.0 70 532-602 65-135 (147)
62 cd04874 ACT_Af1403 N-terminal 88.5 3 6.4E-05 33.1 7.9 61 538-602 2-63 (72)
63 PRK06027 purU formyltetrahydro 88.4 3 6.5E-05 44.1 10.0 71 536-607 6-78 (286)
64 cd04878 ACT_AHAS N-terminal AC 87.7 3.4 7.3E-05 32.6 7.8 47 538-584 2-50 (72)
65 KOG3559 Transcriptional regula 87.3 0.55 1.2E-05 51.2 3.6 43 447-489 7-53 (598)
66 PRK00275 glnD PII uridylyl-tra 86.8 3.4 7.3E-05 50.4 10.3 68 535-602 703-776 (895)
67 PRK08577 hypothetical protein; 86.7 5.3 0.00011 37.3 9.5 66 536-602 56-123 (136)
68 cd04879 ACT_3PGDH-like ACT_3PG 86.5 3.6 7.8E-05 32.2 7.3 60 539-603 2-63 (71)
69 PRK13010 purU formyltetrahydro 86.2 3.5 7.6E-05 43.7 8.9 71 536-606 9-81 (289)
70 PRK03059 PII uridylyl-transfer 86.0 3.8 8.2E-05 49.8 10.2 67 535-601 677-747 (856)
71 cd04884 ACT_CBS C-terminal ACT 85.6 5.3 0.00011 32.7 8.0 62 539-602 2-66 (72)
72 TIGR00655 PurU formyltetrahydr 85.3 4.6 9.9E-05 42.7 9.3 68 538-606 2-72 (280)
73 cd04882 ACT_Bt0572_2 C-termina 85.1 4.6 9.9E-05 31.7 7.2 57 539-600 2-58 (65)
74 PRK05092 PII uridylyl-transfer 85.0 4.1 9E-05 49.8 10.0 78 526-603 720-804 (931)
75 KOG3558 Hypoxia-inducible fact 84.8 0.64 1.4E-05 53.8 2.8 43 446-488 51-97 (768)
76 cd04883 ACT_AcuB C-terminal AC 84.7 7.8 0.00017 31.2 8.6 59 538-601 3-63 (72)
77 cd04894 ACT_ACR-like_1 ACT dom 83.8 6.3 0.00014 32.7 7.3 63 538-600 2-65 (69)
78 PRK07334 threonine dehydratase 83.2 4.4 9.6E-05 44.6 8.5 51 535-585 325-380 (403)
79 PRK04374 PII uridylyl-transfer 82.1 7.2 0.00016 47.5 10.3 68 534-601 688-757 (869)
80 cd04904 ACT_AAAH ACT domain of 80.4 9.2 0.0002 31.9 7.5 62 539-604 3-65 (74)
81 cd04908 ACT_Bt0572_1 N-termina 80.2 15 0.00033 29.5 8.6 56 538-600 3-58 (66)
82 cd04909 ACT_PDH-BS C-terminal 80.1 13 0.00028 29.9 8.1 59 538-600 3-63 (69)
83 PF13185 GAF_2: GAF domain; PD 79.8 1.7 3.8E-05 38.9 3.2 54 169-226 68-126 (148)
84 KOG3898 Transcription factor N 79.6 1.1 2.4E-05 46.6 2.1 51 442-492 73-126 (254)
85 TIGR00119 acolac_sm acetolacta 78.7 9.1 0.0002 37.1 7.9 67 538-605 3-69 (157)
86 KOG4395 Transcription factor A 77.3 3.8 8.3E-05 42.4 5.0 53 442-494 175-230 (285)
87 cd04931 ACT_PAH ACT domain of 77.1 17 0.00037 31.9 8.4 64 537-603 15-79 (90)
88 CHL00100 ilvH acetohydroxyacid 76.7 9.6 0.00021 37.6 7.5 68 538-606 4-71 (174)
89 cd04889 ACT_PDH-BS-like C-term 76.4 10 0.00022 29.3 6.2 45 539-583 1-46 (56)
90 PF13710 ACT_5: ACT domain; PD 75.9 9.1 0.0002 31.2 6.0 59 545-604 1-59 (63)
91 smart00065 GAF Domain present 73.9 21 0.00045 30.2 8.3 75 164-240 52-135 (149)
92 TIGR01817 nifA Nif-specific re 73.8 3.1 6.7E-05 47.5 3.8 77 163-241 68-153 (534)
93 cd04902 ACT_3PGDH-xct C-termin 73.0 13 0.00028 29.8 6.3 59 539-602 2-62 (73)
94 PRK13562 acetolactate synthase 72.9 13 0.00028 32.5 6.4 68 538-605 4-71 (84)
95 PRK10872 relA (p)ppGpp synthet 70.7 14 0.0003 44.3 8.2 64 536-601 666-731 (743)
96 PRK11895 ilvH acetolactate syn 69.8 20 0.00043 35.0 7.7 67 538-605 4-70 (161)
97 COG0788 PurU Formyltetrahydrof 67.7 24 0.00052 37.2 8.2 71 535-606 6-78 (287)
98 COG2844 GlnD UTP:GlnB (protein 67.7 20 0.00044 43.0 8.6 60 528-587 676-736 (867)
99 cd04901 ACT_3PGDH C-terminal A 67.4 6.2 0.00013 31.5 3.2 58 540-602 3-60 (69)
100 cd04929 ACT_TPH ACT domain of 67.1 34 0.00075 28.8 7.8 59 541-603 5-64 (74)
101 PRK11152 ilvM acetolactate syn 66.8 35 0.00077 29.1 7.8 65 538-604 5-69 (76)
102 TIGR00691 spoT_relA (p)ppGpp s 66.6 17 0.00037 43.1 7.9 64 536-601 610-674 (683)
103 PRK11589 gcvR glycine cleavage 65.8 18 0.00038 36.2 6.7 68 535-605 7-74 (190)
104 PRK06737 acetolactate synthase 65.2 26 0.00057 29.9 6.7 66 538-604 4-69 (76)
105 PRK11092 bifunctional (p)ppGpp 64.4 20 0.00043 42.7 7.9 64 536-601 626-690 (702)
106 PRK11061 fused phosphoenolpyru 62.8 10 0.00022 45.5 5.1 61 163-225 67-132 (748)
107 PRK11589 gcvR glycine cleavage 61.4 43 0.00092 33.5 8.5 70 537-606 96-169 (190)
108 cd04885 ACT_ThrD-I Tandem C-te 58.4 38 0.00082 27.5 6.3 59 540-601 2-61 (68)
109 COG4492 PheB ACT domain-contai 56.6 56 0.0012 31.1 7.7 66 535-601 71-137 (150)
110 cd04930 ACT_TH ACT domain of t 54.0 64 0.0014 29.6 7.7 63 537-603 42-105 (115)
111 cd04906 ACT_ThrD-I_1 First of 52.9 73 0.0016 27.1 7.5 63 536-601 1-64 (85)
112 PRK08198 threonine dehydratase 51.1 78 0.0017 34.8 9.3 67 533-601 324-395 (404)
113 TIGR01127 ilvA_1Cterm threonin 49.0 75 0.0016 34.6 8.7 66 534-601 303-373 (380)
114 PRK06382 threonine dehydratase 48.3 71 0.0015 35.3 8.4 67 533-601 327-398 (406)
115 KOG3582 Mlx interactors and re 46.3 5.4 0.00012 46.5 -0.7 64 440-503 650-718 (856)
116 PRK00227 glnD PII uridylyl-tra 46.1 86 0.0019 37.5 9.0 64 538-602 548-612 (693)
117 cd04933 ACT_AK1-AT_1 ACT domai 43.9 1.1E+02 0.0023 26.2 7.0 43 538-584 3-48 (78)
118 PRK08178 acetolactate synthase 42.2 1.4E+02 0.003 26.8 7.6 67 536-604 8-74 (96)
119 PF02120 Flg_hook: Flagellar h 41.2 68 0.0015 26.9 5.5 47 526-572 27-79 (85)
120 PRK11899 prephenate dehydratas 40.7 1.5E+02 0.0032 31.5 9.0 72 536-609 194-269 (279)
121 PF01590 GAF: GAF domain; Int 40.2 18 0.00039 32.5 1.8 62 163-225 51-131 (154)
122 PF02344 Myc-LZ: Myc leucine z 38.1 33 0.00072 24.6 2.4 17 449-465 13-29 (32)
123 KOG4447 Transcription factor T 37.9 23 0.0005 34.3 2.2 43 448-490 29-73 (173)
124 PRK08526 threonine dehydratase 37.3 1.3E+02 0.0028 33.4 8.3 66 533-600 323-393 (403)
125 PF07009 DUF1312: Protein of u 36.9 23 0.00049 32.2 1.9 46 166-213 55-100 (113)
126 PRK15429 formate hydrogenlyase 36.2 82 0.0018 37.3 6.9 75 165-239 253-336 (686)
127 COG4747 ACT domain-containing 35.8 1.1E+02 0.0023 28.8 6.0 46 538-583 5-50 (142)
128 COG0317 SpoT Guanosine polypho 35.6 1E+02 0.0022 36.9 7.4 65 536-602 627-692 (701)
129 COG3830 ACT domain-containing 35.5 79 0.0017 28.1 4.9 49 537-585 4-52 (90)
130 PF05088 Bac_GDH: Bacterial NA 35.4 1.7E+02 0.0036 38.2 9.7 65 535-599 488-557 (1528)
131 PRK15385 magnesium transport p 34.7 2.3E+02 0.0049 29.3 8.9 65 536-600 142-210 (225)
132 PRK05022 anaerobic nitric oxid 34.0 39 0.00084 38.5 3.7 79 163-242 65-154 (509)
133 PRK11898 prephenate dehydratas 30.6 1.9E+02 0.0042 30.5 7.9 71 537-609 197-272 (283)
134 cd04911 ACT_AKiii-YclM-BS_1 AC 29.0 2E+02 0.0044 24.6 6.3 57 545-608 13-69 (76)
135 cd04890 ACT_AK-like_1 ACT doma 28.4 2.8E+02 0.0061 21.5 7.4 24 545-568 12-35 (62)
136 cd04868 ACT_AK-like ACT domain 27.6 2.4E+02 0.0051 20.6 6.1 25 546-570 13-37 (60)
137 cd04912 ACT_AKiii-LysC-EC-like 26.9 3.6E+02 0.0078 22.2 7.8 31 538-568 3-36 (75)
138 cd04922 ACT_AKi-HSDH-ThrA_2 AC 26.8 2.8E+02 0.0062 21.4 6.6 34 538-571 3-39 (66)
139 cd04892 ACT_AK-like_2 ACT doma 26.6 2.5E+02 0.0054 21.0 6.2 34 538-571 2-38 (65)
140 COG3978 Acetolactate synthase 24.5 3.5E+02 0.0076 23.7 6.8 64 539-604 6-69 (86)
141 TIGR01270 Trp_5_monoox tryptop 23.9 2.4E+02 0.0051 32.2 7.4 51 537-587 32-84 (464)
142 KOG4005 Transcription factor X 23.2 2.3E+02 0.0051 29.5 6.5 56 442-504 60-117 (292)
143 cd04932 ACT_AKiii-LysC-EC_1 AC 22.2 4.7E+02 0.01 21.8 8.3 37 544-584 12-48 (75)
144 PF06005 DUF904: Protein of un 21.7 1.4E+02 0.003 25.3 3.9 25 479-503 13-37 (72)
145 TIGR01268 Phe4hydrox_tetr phen 21.4 3.5E+02 0.0076 30.6 8.1 67 537-603 17-84 (436)
146 cd04919 ACT_AK-Hom3_2 ACT doma 21.3 4E+02 0.0086 20.7 6.7 27 545-571 13-39 (66)
147 COG3074 Uncharacterized protei 20.9 1.5E+02 0.0032 25.3 3.8 27 479-505 13-39 (79)
148 PRK09977 putative Mg(2+) trans 20.8 4.8E+02 0.01 26.7 8.3 61 537-601 145-205 (215)
149 KOG3582 Mlx interactors and re 20.7 39 0.00084 39.9 0.6 57 442-501 788-849 (856)
150 PF13492 GAF_3: GAF domain; PD 20.5 81 0.0017 27.2 2.5 54 163-227 49-107 (129)
No 1
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=100.00 E-value=3.8e-54 Score=412.75 Aligned_cols=163 Identities=50% Similarity=0.903 Sum_probs=151.1
Q ss_pred HHHHHHHhccCCCCCCCCcEEEEEeeeccCCCCCeeEEEcccccCCCCCCCcccccccCCcccchHHHHHHHHHHHHHHh
Q 048817 52 LQNKLSDLVDRPNASNFSWNYAIFWQISRSKSGDWVLGWGDGSCREPKEGEESEATRIPNIRLEDETQQRMRKRVLQKLH 131 (613)
Q Consensus 52 Lq~~L~~lv~~~~~~~~~WtYAIFWq~s~~~~g~~vL~WgDGy~~~~~~~e~~~~~~~~~~~~~~~~~q~~rk~vl~~L~ 131 (613)
|||+||+||+ +.+|+||||||++++++ +|+||||||+++++.+... ++.+.+|+++||+|+
T Consensus 1 Lq~~Lr~lv~-----~~~W~YaVFWk~~~~~~---~L~W~DG~~~g~~~~~~~~-----------~~~~~~~~~~l~~l~ 61 (163)
T PF14215_consen 1 LQQRLRSLVE-----NSQWTYAVFWKLSPDNS---VLVWGDGYCNGPKETRKNG-----------EEEQEQRSKVLRELH 61 (163)
T ss_pred ChHHHHHHhC-----CCCCcEEEEeEEcCCCC---eeeEcceeecCCcccccch-----------hhccchhhhHHHHHh
Confidence 7999999999 89999999999999874 9999999999766543221 257888999999999
Q ss_pred hhcCCCCccccccccccccccceeeeccceeecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEE
Q 048817 132 TLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLI 211 (613)
Q Consensus 132 ~l~~~~~~~~~al~~e~vtd~EwFyl~sm~~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivci 211 (613)
++++ ++++.+++|+|+||||++||+|+| |+|+|||||++|+|+||++++.+..++|+|+++||++||||||||
T Consensus 62 ~~~~-----~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~I 134 (163)
T PF14215_consen 62 SSFS-----SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCI 134 (163)
T ss_pred hhcc-----ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEE
Confidence 9997 456788999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EcCCceEeecccccccCCHHHHHHHHHHh
Q 048817 212 STDAGVVELGSVRSVPESLELVHSIRATF 240 (613)
Q Consensus 212 P~~~GVvELGSt~~I~E~~~lv~~ik~~F 240 (613)
|+++||||||||++|+||++||++||++|
T Consensus 135 Pv~~GVvELGSt~~I~Ed~~~v~~vk~~F 163 (163)
T PF14215_consen 135 PVPNGVVELGSTEKIPEDSNLVQRVKSLF 163 (163)
T ss_pred EecCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence 99999999999999999999999999998
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.20 E-value=2e-11 Score=97.48 Aligned_cols=52 Identities=40% Similarity=0.658 Sum_probs=49.4
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAIAYINELQAKL 493 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~---~K~dKasIL~~AI~YIk~Lq~~v 493 (613)
+..|+.+||+||++||..|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999987 89999999999999999999875
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.18 E-value=3.9e-11 Score=93.87 Aligned_cols=49 Identities=43% Similarity=0.663 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 048817 446 VEAERQRREKLNQRFYALRAVVPN---ISKMDKASLLGDAIAYINELQAKLK 494 (613)
Q Consensus 446 ~~~ER~RR~kln~~f~~LrslvP~---~~K~dKasIL~~AI~YIk~Lq~~v~ 494 (613)
+..||+||++||+.|..|+++||. ..|++|++||..||+||++|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999994 6799999999999999999999876
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.17 E-value=2.9e-11 Score=95.70 Aligned_cols=49 Identities=45% Similarity=0.724 Sum_probs=46.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC-----CCCChhhHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI-----SKMDKASLLGDAIAYINELQ 490 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-----~K~dKasIL~~AI~YIk~Lq 490 (613)
+..|+..||+||++||..|..|+.+||.. .|.+|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 36799999999999999999999999975 78999999999999999997
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.63 E-value=3.2e-08 Score=106.89 Aligned_cols=56 Identities=38% Similarity=0.574 Sum_probs=50.2
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHH
Q 048817 440 EEPLNHVEAERQRREKLNQRFYALRAVVPNI----SKMDKASLLGDAIAYINELQAKLKV 495 (613)
Q Consensus 440 ~~~~~H~~~ER~RR~kln~~f~~LrslvP~~----~K~dKasIL~~AI~YIk~Lq~~v~~ 495 (613)
.++.+|+++|||||++||+++..|..|||.+ .|..|..||..+++||++||+..++
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999976 4566999999999999999987663
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.36 E-value=3.8e-07 Score=88.21 Aligned_cols=64 Identities=31% Similarity=0.481 Sum_probs=56.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI-------SKMDKASLLGDAIAYINELQAKLKVMEAERENLSG 505 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-------~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~~ 505 (613)
+..|..+||+||+.||.-|..|..|||.+ .|..||-||..+|+||.+|++.+...+.+...|.+
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999953 37789999999999999999998888877766653
No 7
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.11 E-value=8.6e-06 Score=82.73 Aligned_cols=67 Identities=25% Similarity=0.388 Sum_probs=54.0
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048817 437 NGREEPLNHVEAERQRREKLNQRFYALRAVVPNI--SKMD-KASLLGDAIAYINELQAKLKVMEAERENL 503 (613)
Q Consensus 437 ~~r~~~~~H~~~ER~RR~kln~~f~~LrslvP~~--~K~d-KasIL~~AI~YIk~Lq~~v~~Le~~~~~l 503 (613)
++...+..|+.-||+||..|+..|..|+.+||+. .+.. .++||..|+.||+.|+.+..+....++.|
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445678999999999999999999999999973 2222 68999999999999998876665544433
No 8
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.97 E-value=4.9e-06 Score=85.61 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=48.0
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCC--------CCCCChhhHHHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVPN--------ISKMDKASLLGDAIAYINELQAKLK 494 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP~--------~~K~dKasIL~~AI~YIk~Lq~~v~ 494 (613)
++.+|-+.||+||.|||+.+..|+.|||. .+|++||-||.-|++|+++|++...
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 35778899999999999999999999994 3788999999999999999998643
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.89 E-value=1.2e-05 Score=93.59 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=47.4
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI----SKMDKASLLGDAIAYINELQAK 492 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~----~K~dKasIL~~AI~YIk~Lq~~ 492 (613)
+.+|..+|||||++||..+.+|.+|||.+ .|+||..||..||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 47899999999999999999999999974 6999999999999999998874
No 10
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.78 E-value=0.0002 Score=60.25 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=54.1
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFS 600 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~ 600 (613)
+|+|.+++++|+|.+|.++|.++||+|+.|.|++.++++..+|.|.-..+..++..+..+.|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~ 65 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIE 65 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 689999999999999999999999999999999999999999999877666665434444443
No 11
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.78 E-value=0.00017 Score=61.15 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=50.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTK 592 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~ 592 (613)
+|+|.|++++|+|.+|..+|-+++++|.+|.|++.++++..+|.|+-..|..++.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~ 57 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLST 57 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999777766653
No 12
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.45 E-value=0.00088 Score=56.88 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=52.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEeCCCcccc----HHHHHHHHHHh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLS--TGNDMVFHTFVIKSQGSEQLT----KEKLIAAFSCE 602 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs--~~~~~~~~t~~vk~~~~~~~t----~e~L~~aL~~~ 602 (613)
+|+|.|++|+|+|.+|..+|.++|++|+.|.|+ +.++++.-+|.|.. .+..++ .++|.++|.+.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~-~g~kl~d~~~~~~L~~~L~~~ 71 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQS-DGKKIMDPKKQAALCARLREE 71 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeC-CCCccCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999 99999999999944 443343 34555555543
No 13
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.0016 Score=54.99 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=52.6
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeCCCcccc---HHHHHHHHHHh
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLST-GNDMVFHTFVIKSQGSEQLT---KEKLIAAFSCE 602 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~-~~~~~~~t~~vk~~~~~~~t---~e~L~~aL~~~ 602 (613)
++|+|.|++++|+|++|..+|..+|++|++|.+.+ .++.++.+|.|.-.++.... .++|..+|.+.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~ 70 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAV 70 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999986 89999999999754433222 34455555443
No 14
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.34 E-value=0.00013 Score=85.34 Aligned_cols=67 Identities=30% Similarity=0.505 Sum_probs=59.6
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHHhhcCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 438 GREEPLNHVEAERQRREKLNQRFYALRAVVPN-ISKMDKASLLGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 438 ~r~~~~~H~~~ER~RR~kln~~f~~LrslvP~-~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
|.+++.+|+.+|||-|--||+++..||.+||. ..|..|..+|..||+||++|+...+.|+.++..+.
T Consensus 273 G~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 273 GGEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CCcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 35778999999999999999999999999997 68999999999999999999998887776665544
No 15
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.28 E-value=0.00015 Score=75.11 Aligned_cols=53 Identities=30% Similarity=0.495 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 048817 445 HVEAERQRREKLNQRFYALRAVVPN--ISKMDKASLLGDAIAYINELQAKLKVME 497 (613)
Q Consensus 445 H~~~ER~RR~kln~~f~~LrslvP~--~~K~dKasIL~~AI~YIk~Lq~~v~~Le 497 (613)
-+..||+|-+-||.-|..||+|||. ..|..||.||..+.+||.+|+...-+|-
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 3567999999999999999999997 7899999999999999999998766553
No 16
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.26 E-value=0.00055 Score=69.51 Aligned_cols=63 Identities=30% Similarity=0.426 Sum_probs=52.3
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhh-cCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRA-VVPN-ISKMDKASLLGDAIAYINELQAKLKVMEAERENL 503 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~Lrs-lvP~-~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l 503 (613)
+++.-.+.||||=.|+|+.|.+|+- -.+| ..+.-|+-||..||+||..||.-++++.+....+
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 4566789999999999999999964 4555 4567899999999999999999999987655444
No 17
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0045 Score=51.53 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=46.0
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQL 590 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~ 590 (613)
.|.|.|++++|+|++|..+|..+|++|+.|.+.+. ++.++.+|.|.-..+..+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~ 56 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI 56 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC
Confidence 57889999999999999999999999999999776 699999999975444433
No 18
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.92 E-value=0.00082 Score=68.34 Aligned_cols=57 Identities=33% Similarity=0.416 Sum_probs=50.1
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVPN----ISKMDKASLLGDAIAYINELQAKLKVME 497 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP~----~~K~dKasIL~~AI~YIk~Lq~~v~~Le 497 (613)
.+..++..||+|=+.+|..|..||.+||. .+|..|..+|.-||.||+.|+.-++.-+
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 45667788999999999999999999995 5678999999999999999998776555
No 19
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.73 E-value=0.015 Score=48.67 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=51.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCC-Cccc-c---HHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQG-SEQL-T---KEKLIAAFSC 601 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~-~~~~-t---~e~L~~aL~~ 601 (613)
.|+|.+++++|++.+|..+|..+|+.|+.|.+.+.++.++.+|.|.-.. +..+ . .++|.++|.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~ 70 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN 70 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999997433 3222 2 3455555554
No 20
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.65 E-value=0.018 Score=46.65 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=46.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCcccc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLT 591 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t 591 (613)
.|.|.+++++|++.+|+.+|.++++.|.++.+.+.++.++.+|.+.-..+....
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~ 55 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLD 55 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCC
Confidence 578999999999999999999999999999999888899999999865444333
No 21
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.59 E-value=0.0064 Score=52.34 Aligned_cols=52 Identities=21% Similarity=0.442 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048817 454 EKLNQRFYALRAVVPNI------SKMDKASLLGDAIAYINELQAKLKVMEAERENLSG 505 (613)
Q Consensus 454 ~kln~~f~~LrslvP~~------~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~~ 505 (613)
++|++....|+.|+|.. .|..-+-+|.+|..||+.|+++|..|..+..+|-.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999953 33444558999999999999999999998887763
No 22
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.19 E-value=0.047 Score=45.92 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=56.8
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
.++|.+.+++++|.+..|..+|.++|.++..++.++.++.+...+.|... .. ..++|.++|.++..++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--~~-~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--ED-SLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--HH-HHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--cc-cHHHHHHHHHHHHHHC
Confidence 46899999999999999999999999999999999999999999888885 22 6678999998886553
No 23
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.03 E-value=0.076 Score=44.14 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=42.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeC
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQ 585 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~ 585 (613)
.|.|.++++.|+|.+|..+|.++++.|+++.+.+.++..+.+|.|.-.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~ 50 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA 50 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC
Confidence 577888999999999999999999999999998887888888888643
No 24
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.82 E-value=0.077 Score=44.32 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=49.4
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLS-TGNDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs-~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.|-|.|++++++|++|..+|..++|.|+.|.+. +.++.++.+|.|.-..+ -....|.++|++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~--~~~~~~~~~~~~ 65 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR--GETAALGHALQK 65 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc--cchHHHHHHHHH
Confidence 467889999999999999999999999999986 55788999999975433 233456666654
No 25
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=95.81 E-value=0.09 Score=44.34 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=57.3
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
+.|.+.|++++|...+|-+.|.++|..+..++....++.++..+.+... ..+.++|.++|.++..+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999988888888764 24678899888887654
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.72 E-value=0.15 Score=40.77 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=44.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCcccc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLT 591 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t 591 (613)
.|.|.|++++|.+.+|+.+|.++++.|.++.+.+.++.....|.+....+..+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~ 55 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLD 55 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCC
Confidence 477899999999999999999999999999988877777778888765433333
No 27
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.64 E-value=0.049 Score=45.79 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=43.5
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeCC
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG--NDMVFHTFVIKSQG 586 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~--~~~~~~t~~vk~~~ 586 (613)
.+.|+|.+.+++|+|.+|..+|.+.++.+.++++... ++.....|.+++++
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 4679999999999999999999999999999999884 67888899999854
No 28
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.61 E-value=0.082 Score=43.84 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=50.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCc-cccHHHHHHHHHHhhhcc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSE-QLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~-~~t~e~L~~aL~~~~~~~ 606 (613)
.|.|.|++++|.+.+|.+.|.++|+.+...+..+........+.+++.... ....++|.++|..+...+
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l 70 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEF 70 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 378999999999999999999999999999877532222233333332233 256889999999888654
No 29
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=95.58 E-value=0.12 Score=40.86 Aligned_cols=62 Identities=23% Similarity=0.189 Sum_probs=45.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDM-VFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~-~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
.|.|.|++++|.|.+|.++|.++++.|.++......+. ....+.... .....++++++|.++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV---DEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE---EGHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC---CCCCHHHHHHHHHcc
Confidence 57889999999999999999999999999999887762 222222222 234455777777765
No 30
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.52 E-value=0.12 Score=43.23 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=54.9
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN------DMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~------~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
|.|.|++++|.+.+|-+.|.++|+.+...+..+.+ +.+...+.+.+. .....++|.++|..++.++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p--~~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP--AGTDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC--CCCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999988776 556666666654 3566789999999888764
No 31
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.50 E-value=0.19 Score=60.76 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=55.8
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccH---HHHHHHHH
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTK---EKLIAAFS 600 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~---e~L~~aL~ 600 (613)
.-..|+|.|.+++|+|.+|.++|.++||+|++|.|++.++++.-+|.|.-..+..++. ++|.++|.
T Consensus 807 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~ 875 (884)
T PRK05007 807 RRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLT 875 (884)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999998766665653 34444444
No 32
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.41 E-value=0.076 Score=45.69 Aligned_cols=69 Identities=7% Similarity=0.081 Sum_probs=58.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
..|.+.|++++|.+.+|.+.|-++|+++..++..+.++.++..+.+.... .....++|.++|.++...+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SNLDFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999888888887777777642 2456789999998887664
No 33
>PRK00194 hypothetical protein; Validated
Probab=95.02 E-value=0.13 Score=44.21 Aligned_cols=70 Identities=4% Similarity=0.050 Sum_probs=57.3
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
.+.|.|.|++++|.+.+|.+.|.++|+.|...+..+.++.+...+.+.... .....+.|.+.|.++...+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~l~~l~~~~ 72 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKKDFAELKEELEELGKEL 72 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999998887788777777777642 1344678888888887654
No 34
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.57 E-value=0.27 Score=41.04 Aligned_cols=66 Identities=8% Similarity=0.155 Sum_probs=55.6
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
|.|.+++++|...+|-++|.++|+++...+.++..+.+...+.+... .....++|.++|..+.+++
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l 67 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHEL 67 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHc
Confidence 67889999999999999999999999999988888887777777764 3356788999998887654
No 35
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.27 E-value=0.25 Score=40.40 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=47.6
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
|+|.+..++|.|.+|+.+|.+.|..|.+.++... ++.....|++++.+..++. .|..+|.++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~--~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHAE--TIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHHHH--HHHHHHhcC
Confidence 7888999999999999999999999999988765 4666677888875544443 455555543
No 36
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.60 E-value=0.25 Score=59.57 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=56.9
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccH---HHHHHHHHH
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTK---EKLIAAFSC 601 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~---e~L~~aL~~ 601 (613)
.-..|+|.+.+++|+|.+|.++|.++|++|+.|.|++.++++.-+|.|.-..+..++. ++|.++|..
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~ 851 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLS 851 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999998766655553 455555543
No 37
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=93.44 E-value=0.037 Score=61.19 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=47.8
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHhhcCCC----CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 048817 440 EEPLNHVEAERQRREKLNQRFYALRAVVPN----ISKMDKASLLGDAIAYINELQAKLKVM 496 (613)
Q Consensus 440 ~~~~~H~~~ER~RR~kln~~f~~LrslvP~----~~K~dKasIL~~AI~YIk~Lq~~v~~L 496 (613)
|++...+..||-|-..||+.|.+|-.+.-- ...-.|.-||..|+.-|-.|+++|+|-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 457888999999999999999999887653 222358899999999999999999874
No 38
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.10 E-value=0.51 Score=37.49 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=42.5
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-----NDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-----~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
++|.++.++|.|.+|+++|.+.+++|.+...... .+.....+++++.+..+ -++++++|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~--l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEH--IEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHH--HHHHHHHHHH
Confidence 4678899999999999999999999998876653 34555556666632122 2355555543
No 39
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.00 E-value=0.42 Score=57.98 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=57.2
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCcccc----HHHHHHHHHHhh
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLT----KEKLIAAFSCES 603 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t----~e~L~~aL~~~~ 603 (613)
+-..|.|.+.+++|+|++|..+|..+||+|+.|.|.+.+++++-+|.|.-..+..++ .++|.++|.+..
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999865554433 345666666544
No 40
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.91 E-value=0.42 Score=39.14 Aligned_cols=64 Identities=9% Similarity=0.043 Sum_probs=45.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
.|+|.++++++.+.+|+.+|.+.++.+...+.+.. ++.....|++++.+.. .--++|..+|.++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~-~~l~~l~~~L~~i 66 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN-GDIDELLEELREI 66 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH-HHHHHHHHHHhcC
Confidence 57888999999999999999999999999976543 3556666777764332 1223555555543
No 41
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.61 E-value=0.11 Score=58.27 Aligned_cols=39 Identities=33% Similarity=0.618 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CCCCChhhHHHHHHHHHH
Q 048817 449 ERQRREKLNQRFYALRAVVPN----ISKMDKASLLGDAIAYIN 487 (613)
Q Consensus 449 ER~RR~kln~~f~~LrslvP~----~~K~dKasIL~~AI~YIk 487 (613)
-+|-|+|||..+..|.+|+|- ++|.||.|||.-++.|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 456789999999999999995 799999999999999985
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=92.59 E-value=0.61 Score=55.80 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=51.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccH
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTK 592 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~ 592 (613)
-..|.|.|.+++|+|.+|..+|..++++|+.|.+.+.++.++-+|.|.-..+..++.
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~ 763 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLAD 763 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCch
Confidence 478999999999999999999999999999999999999999999998766655553
No 43
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=92.56 E-value=0.063 Score=51.13 Aligned_cols=54 Identities=35% Similarity=0.453 Sum_probs=47.6
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVPN--ISKMDKASLLGDAIAYINELQAKLK 494 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP~--~~K~dKasIL~~AI~YIk~Lq~~v~ 494 (613)
++.-|++.||+|=..||+.|..||.++|. +.|..|.--|.-|..||..|-+-..
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 46789999999999999999999999996 6788888889999999999876543
No 44
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.47 E-value=0.69 Score=56.01 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=57.2
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCcccc---HHHHHHHHHHhh
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLT---KEKLIAAFSCES 603 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t---~e~L~~aL~~~~ 603 (613)
+-..|.|.+.+++|+|++|..+|..++++|+.|.|++.+++++-+|.|.-..+..++ +++|.++|....
T Consensus 795 ~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 795 RRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred CeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999999999865554343 356666665544
No 45
>PRK03381 PII uridylyl-transferase; Provisional
Probab=92.17 E-value=0.78 Score=54.87 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=58.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 534 HDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 534 g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
.+.+.|.|.|++++|++++|..+|..+|++|+.|.+.+.++.++.+|.|.-..+.....++|.++|.+..
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999989999999999865444344566777766543
No 46
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.00 E-value=1.1 Score=37.12 Aligned_cols=66 Identities=8% Similarity=0.151 Sum_probs=46.9
Q ss_pred EEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEeCCC-ccccHHHHHHHHHHhhhc
Q 048817 540 RVSCPLDSHPASRVIQAFKDAQITVVESKLSTGND-MVFHTFVIKSQGS-EQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 540 rI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~-~~~~t~~vk~~~~-~~~t~e~L~~aL~~~~~~ 605 (613)
-+..++++|.|.+|++.|+++|+.+.+.......+ ..-+.|.+.+.+. ....-+++++.|.+....
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~ 70 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTED 70 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCe
Confidence 34456789999999999999999999997665544 5667888888653 233334556666655443
No 47
>PRK05092 PII uridylyl-transferase; Provisional
Probab=91.64 E-value=0.96 Score=55.20 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=58.0
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCcccc----HHHHHHHHHHhhh
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLT----KEKLIAAFSCESS 604 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t----~e~L~~aL~~~~~ 604 (613)
....|.|.|.+++|+|.+|..+|.++|++|.+|.+.+.++.+.-+|.|.-..+..+. .++|.++|.+...
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999999999999999865444332 3567777766553
No 48
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.74 Score=54.50 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=64.2
Q ss_pred CccceEEe--CCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 526 PDVDIQAA--HDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 526 ~~VeV~i~--g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
|.|++.-. .+.-.|+|.+.+++|+|..|-.+|.+++|++++|.|++.+.++.-+|.|....+..++.+.=...++.+.
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll 858 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLL 858 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHH
Confidence 55555433 2356799999999999999999999999999999999999999999999987777776544344444555
Q ss_pred hccC
Q 048817 604 SSIQ 607 (613)
Q Consensus 604 ~~~~ 607 (613)
+.+.
T Consensus 859 ~al~ 862 (867)
T COG2844 859 EALL 862 (867)
T ss_pred HHhc
Confidence 4443
No 49
>PRK03059 PII uridylyl-transferase; Provisional
Probab=91.00 E-value=1.1 Score=54.09 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=46.2
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIK 583 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk 583 (613)
+-..|.|.|++++|+|++|..+|..+|++|+.|.|.+.++.++-+|.|.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 4568999999999999999999999999999999999999999999994
No 50
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=90.86 E-value=1.5 Score=31.49 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=30.6
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN 573 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~ 573 (613)
|++.|+.+.+.+.+|+..|...++.+.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788888999999999999999999999876654
No 51
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=90.69 E-value=2.4 Score=32.25 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=37.5
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeC
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQ 585 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~ 585 (613)
|+|.|.++++.+.+|++.|.++++++....+...+ +.....++++..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 46788899999999999999999999999876655 445455666653
No 52
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=90.49 E-value=1.3 Score=53.40 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=55.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEeCCCcccc----HHHHHHHHHHhh
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLS-TGNDMVFHTFVIKSQGSEQLT----KEKLIAAFSCES 603 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs-~~~~~~~~t~~vk~~~~~~~t----~e~L~~aL~~~~ 603 (613)
+...|.|.+++++|+|.+|..+|..+||+|+.|.|. +.++.++-+|.|.-..+..+. .++|..+|.+..
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999998 778999999999876554333 234555555444
No 53
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=90.21 E-value=0.83 Score=37.88 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=42.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.|+|.|.++.|++.+|+.+|.+.++.+.+.++... +. -.+.+++.+-.++ +.|..+|.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~~~~L--~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIEFEKL--QTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecCHHHH--HHHHHHHhC
Confidence 47899999999999999999999999999988664 44 3355555432222 344444443
No 54
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=90.19 E-value=1.1 Score=54.04 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=55.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccH---HHHHHHHH
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTK---EKLIAAFS 600 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~---e~L~~aL~ 600 (613)
-..|.|.|.+++|++.+|.++|.++|++|.++.+++.++++..+|.|....+..++. ++|.++|.
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998765554543 44555544
No 55
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=90.06 E-value=1.8 Score=45.83 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=54.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
.+.|.|.|++++|...+|-+.|-++++.+...+..+.....+.++.+++......+.++|.++|..+...+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999876433333333455553334566889999999888764
No 56
>PRK05007 PII uridylyl-transferase; Provisional
Probab=90.02 E-value=1.7 Score=52.87 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=57.3
Q ss_pred CccceEEe--CCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccH---HHHHHHH
Q 048817 526 PDVDIQAA--HDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTK---EKLIAAF 599 (613)
Q Consensus 526 ~~VeV~i~--g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~---e~L~~aL 599 (613)
+-|.+... .+...|.|.|+++.|+|.+|..+|..++|+|+.|.|.+. ++.++.+|.|.-..+..++. ++|.++|
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L 768 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKAL 768 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 44444332 356789999999999999999999999999999998765 55999999998665544443 3355555
Q ss_pred HH
Q 048817 600 SC 601 (613)
Q Consensus 600 ~~ 601 (613)
.+
T Consensus 769 ~~ 770 (884)
T PRK05007 769 EQ 770 (884)
T ss_pred HH
Confidence 54
No 57
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=89.35 E-value=3.1 Score=34.95 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=45.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
.|.+..+++.|.|.+|++.|.++++.+++...... ++...+.|.|...+. ...+.+.++|..+-.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHHHHHHH
Confidence 34555677899999999999999999999975544 345667888887543 334455555554433
No 58
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.26 E-value=2.9 Score=33.58 Aligned_cols=47 Identities=6% Similarity=0.098 Sum_probs=36.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEe
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN--DMVFHTFVIKS 584 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~--~~~~~t~~vk~ 584 (613)
.|+|.+.+++|.+.+|+..|.+.++.+......... +.....++++.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 688999999999999999999999999998765442 44444444443
No 59
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=89.00 E-value=2.3 Score=51.61 Aligned_cols=76 Identities=13% Similarity=0.255 Sum_probs=57.7
Q ss_pred CccceEE--eCCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeCCCccccH---HHHHHHH
Q 048817 526 PDVDIQA--AHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLST-GNDMVFHTFVIKSQGSEQLTK---EKLIAAF 599 (613)
Q Consensus 526 ~~VeV~i--~g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~-~~~~~~~t~~vk~~~~~~~t~---e~L~~aL 599 (613)
+.|.+.. ..+...|.|.|++++|+|++|..+|..+||+|+.|.|.+ .++.++-+|.|.-..+..+.. ++|.++|
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L 744 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQAL 744 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4444433 235578999999999999999999999999999999866 889999999998555543433 2455555
Q ss_pred HH
Q 048817 600 SC 601 (613)
Q Consensus 600 ~~ 601 (613)
.+
T Consensus 745 ~~ 746 (854)
T PRK01759 745 TK 746 (854)
T ss_pred HH
Confidence 54
No 60
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.98 E-value=2.3 Score=33.56 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=42.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG--NDMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~--~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
+|.+.+++++|.+.+|...|.++++.+.+...... ++..... +++.+. ..+++++.|.++-
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~---~~~~~i~~l~~~~ 63 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP---IDEEVIEEIKKIP 63 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC---CCHHHHHHHHcCC
Confidence 36788899999999999999999999998876552 2333333 555433 3346777676543
No 61
>PRK04435 hypothetical protein; Provisional
Probab=88.96 E-value=2.6 Score=40.25 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=52.5
Q ss_pred EeCCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 532 AAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 532 i~g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
..|..+.|.+.+.+++|.|.+|++.|.+.++.|...+.+.. ++....+|++++.+.. ..-++|+++|.++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~-~~L~~Li~~L~~i 135 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME-GDIDELLEKLRNL 135 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH-HHHHHHHHHHHcC
Confidence 45778999999999999999999999999999999976543 5666677888774321 1234566666544
No 62
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.53 E-value=3 Score=33.05 Aligned_cols=61 Identities=5% Similarity=0.017 Sum_probs=42.1
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
.|+|.+++++|.+.+|+..|.+.++.+........+ +.. .+.+.+.+. -..+++.++|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~~~L~~~ 63 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKA--RIYMELEGV--GDIEELVEELRSL 63 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeE--EEEEEEecc--ccHHHHHHHHhCC
Confidence 477889999999999999999999999988765543 333 344555432 2333555555543
No 63
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=88.37 E-value=3 Score=44.08 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=56.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhccC
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLST--GNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSIQ 607 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~--~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~~ 607 (613)
.+.|.|.|++++|+...|-++|.++|+.+..++.++ .++.+...+.+... ....+.++|.++|.++.+++.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLIFNLETLRADFAALAEEFE 78 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHhC
Confidence 467999999999999999999999999999999888 77765555555551 223447799999998887653
No 64
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=87.73 E-value=3.4 Score=32.57 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=37.4
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEe
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG--NDMVFHTFVIKS 584 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~--~~~~~~t~~vk~ 584 (613)
+|++.+.+++|.+.+|+..|.+.++.+........ ++.....+.+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 47788889999999999999999999999987653 345555566654
No 65
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=87.27 E-value=0.55 Score=51.25 Aligned_cols=43 Identities=40% Similarity=0.599 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC----CCCCChhhHHHHHHHHHHHH
Q 048817 447 EAERQRREKLNQRFYALRAVVPN----ISKMDKASLLGDAIAYINEL 489 (613)
Q Consensus 447 ~~ER~RR~kln~~f~~LrslvP~----~~K~dKasIL~~AI~YIk~L 489 (613)
-+-|+||++-|-.|+.|..++|- .+..||++|+.-|..|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 45689999999999999999995 45689999999999999853
No 66
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=86.76 E-value=3.4 Score=50.42 Aligned_cols=68 Identities=7% Similarity=0.262 Sum_probs=53.8
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEeCCCccc-----cHHHHHHHHHHh
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKL-STGNDMVFHTFVIKSQGSEQL-----TKEKLIAAFSCE 602 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asv-s~~~~~~~~t~~vk~~~~~~~-----t~e~L~~aL~~~ 602 (613)
+...|.|.|++++++|++|..+|..+|++|+.|.| ++.++.++.+|.|.-..+..+ ..++|.++|.+.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~ 776 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEA 776 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998 566789999999986554432 123455665543
No 67
>PRK08577 hypothetical protein; Provisional
Probab=86.70 E-value=5.3 Score=37.33 Aligned_cols=66 Identities=6% Similarity=0.102 Sum_probs=48.8
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN--DMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~--~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
.+.|+|.+.+++|.+.+|++.|.++++++.+.+..... +.....+++.+.... ..-+++.+.|.++
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~-~~l~~l~~~L~~l 123 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD-IDLEELEEELKKL 123 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch-hhHHHHHHHHHcC
Confidence 57799999999999999999999999999988776643 445556777775431 1224666666654
No 68
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=86.51 E-value=3.6 Score=32.21 Aligned_cols=60 Identities=5% Similarity=0.115 Sum_probs=44.1
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN--DMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~--~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
+.|.++++.|.+.+|++.|.+.++.+.+..+.... +.....+.+ .. . ..++|.+.|.++-
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~--~~~~l~~~l~~~~ 63 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P--VPEEVLEELKALP 63 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C--CCHHHHHHHHcCC
Confidence 56788899999999999999999999999876654 455555555 22 2 2457777776543
No 69
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=86.21 E-value=3.5 Score=43.75 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=53.8
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLS--TGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs--~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
.+.|.|.|+++.|..++|-+.|-++|+.++.++-. ...+.++..+.+..........++|.++|..+..++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l 81 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKF 81 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999999864 334455444334322234567889999998877664
No 70
>PRK03059 PII uridylyl-transferase; Provisional
Probab=86.03 E-value=3.8 Score=49.75 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=53.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCeEEEEEEEEeCCCccc---cHHHHHHHHHH
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKL-STGNDMVFHTFVIKSQGSEQL---TKEKLIAAFSC 601 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asv-s~~~~~~~~t~~vk~~~~~~~---t~e~L~~aL~~ 601 (613)
+...|-|.|++++++|++|..+|..+||+|+.|.+ ++.++.++.+|.|.-..+... ..++|.++|.+
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~ 747 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAE 747 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999 567899999999975433311 24456555554
No 71
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.61 E-value=5.3 Score=32.69 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=41.8
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG---NDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~---~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
+.+.-++++|.|.+|++.|.++|+.|++...... .+.....+.+.+..... .++|+++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~--~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSK--ENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchH--HHHHHHHHhCc
Confidence 4566688999999999999999999999876654 23333444444422121 55777776543
No 72
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=85.33 E-value=4.6 Score=42.67 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=53.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeCCCccccHHHHHHHHHH-hhhcc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN--DMVFHTFVIKSQGSEQLTKEKLIAAFSC-ESSSI 606 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~--~~~~~t~~vk~~~~~~~t~e~L~~aL~~-~~~~~ 606 (613)
.|.|.|+++.|..+.|-..|-++|+.++.++..... +.++..+.+... +...+.++|.++|.. +..++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~ 72 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKF 72 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999877643 666655555543 224678899999988 66654
No 73
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.06 E-value=4.6 Score=31.69 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=38.7
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHH
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFS 600 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~ 600 (613)
|.|.-++++|.|.++++.|.+.++.|.+.........-...+.+++.+ .+.+.+.|.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----~~~~~~~L~ 58 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-----IEKAIEVLQ 58 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-----HHHHHHHHH
Confidence 566778999999999999999999998776544331122334555533 445655554
No 74
>PRK05092 PII uridylyl-transferase; Provisional
Probab=85.02 E-value=4.1 Score=49.83 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=58.5
Q ss_pred CccceEEe--CCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeCCCccc----cHHHHHHH
Q 048817 526 PDVDIQAA--HDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLST-GNDMVFHTFVIKSQGSEQL----TKEKLIAA 598 (613)
Q Consensus 526 ~~VeV~i~--g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~-~~~~~~~t~~vk~~~~~~~----t~e~L~~a 598 (613)
+.|.++.. .+...|.|.|+++.|++.+|..+|..+|++|+.|.+.+ .++.++.+|.|.-..+... ..++|..+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~ 799 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKA 799 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 44444443 25678999999999999999999999999999999876 6788888899976544322 24556666
Q ss_pred HHHhh
Q 048817 599 FSCES 603 (613)
Q Consensus 599 L~~~~ 603 (613)
|.+..
T Consensus 800 L~~~l 804 (931)
T PRK05092 800 IEDAL 804 (931)
T ss_pred HHHHH
Confidence 66544
No 75
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=84.84 E-value=0.64 Score=53.82 Aligned_cols=43 Identities=40% Similarity=0.625 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCC----CCCCChhhHHHHHHHHHHH
Q 048817 446 VEAERQRREKLNQRFYALRAVVPN----ISKMDKASLLGDAIAYINE 488 (613)
Q Consensus 446 ~~~ER~RR~kln~~f~~LrslvP~----~~K~dKasIL~~AI~YIk~ 488 (613)
..+-|-||-|=|.-|+.|..+||- .+..|||||+.-||.|++-
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 357789999999999999999994 5678999999999999974
No 76
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.74 E-value=7.8 Score=31.23 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=41.5
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG--NDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~--~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.|.+..++++|.+.++++.|.+.++.+.+...... .+.....|.+.. ...+++.++|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-----~~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-----MNPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-----CCHHHHHHHHHH
Confidence 57778889999999999999999999998865443 234444444443 123477777664
No 77
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.79 E-value=6.3 Score=32.67 Aligned_cols=63 Identities=11% Similarity=0.228 Sum_probs=47.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCc-cccHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSE-QLTKEKLIAAFS 600 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~-~~t~e~L~~aL~ 600 (613)
.|.|+||++.|+-.+|...+-+.||.|....+++.+.--+..|.|.-.... ...=+-|+..|.
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~ 65 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLM 65 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHH
Confidence 589999999999999999999999999999999988876667766543322 222344444443
No 78
>PRK07334 threonine dehydratase; Provisional
Probab=83.20 E-value=4.4 Score=44.65 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=43.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEeC
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-----NDMVFHTFVIKSQ 585 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-----~~~~~~t~~vk~~ 585 (613)
-.+.|+|.+.++.++|.+|+.+|.+.++.|.++++... ++.....|++++.
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~ 380 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR 380 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC
Confidence 35899999999999999999999999999999988754 4666667778774
No 79
>PRK04374 PII uridylyl-transferase; Provisional
Probab=82.10 E-value=7.2 Score=47.47 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEEeCCCc-cccHHHHHHHHHH
Q 048817 534 HDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLST-GNDMVFHTFVIKSQGSE-QLTKEKLIAAFSC 601 (613)
Q Consensus 534 g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~-~~~~~~~t~~vk~~~~~-~~t~e~L~~aL~~ 601 (613)
.+...|-|.|++++++|++|..+|..+|+.|+.|.+.+ .++.++.+|.|.-..+. .-..++|.++|.+
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~ 757 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQ 757 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999975 68999999999755442 1223445555554
No 80
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=80.44 E-value=9.2 Score=31.88 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=44.7
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
|-+..++++|.|.+++..+...|+.+.+...-... ...-+.|.|.+.+ ..+.+.++|.++..
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~----~~~~~~~~l~~L~~ 65 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV----DRGDLDQLISSLRR 65 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc----ChHHHHHHHHHHHH
Confidence 34455778999999999999999999999876544 3455788888865 23345555555543
No 81
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=80.24 E-value=15 Score=29.46 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=40.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFS 600 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~ 600 (613)
.|.|..++++|.|.+|++.|.+.|+.|.+.-+....+. ..+.+.... .+++.++|.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~~-----~~~~~~~L~ 58 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVSD-----PDKAKEALK 58 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEECC-----HHHHHHHHH
Confidence 35677889999999999999999999998876555553 444554421 445555554
No 82
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.05 E-value=13 Score=29.87 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=40.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-C-eEEEEEEEEeCCCccccHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-D-MVFHTFVIKSQGSEQLTKEKLIAAFS 600 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~-~~~~t~~vk~~~~~~~t~e~L~~aL~ 600 (613)
.+++.+++++|.|.+|.+.|.++++.+......... + .....+.++.. . ..+++.+.|.
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~---~-~~~~~~~~L~ 63 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ---E-DRERAKEILK 63 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH---H-HHHHHHHHHH
Confidence 477889999999999999999999999988655542 2 33334555421 1 3445655554
No 83
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=79.83 E-value=1.7 Score=38.94 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=37.3
Q ss_pred CccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc--C---CceEeecccccc
Q 048817 169 GGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST--D---AGVVELGSVRSV 226 (613)
Q Consensus 169 GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~--~---~GVvELGSt~~I 226 (613)
|+.+.++.+++++|+. .+.....+...+...||+.++|||+ . -|||.|++.+.-
T Consensus 68 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~ 126 (148)
T PF13185_consen 68 GLWEGVLRTGEPIIIN----DDDSSFPPWELARHPGIRSILCVPLRSGGEVIGVLSLYSKEPN 126 (148)
T ss_dssp ETTSHHHHHTS-EEES----CCCGGGSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEESSTT
T ss_pred hHHHHHHhcCceEEEe----CccccccchhhhccccCCEEEEEEEeECCEEEEEEEEeeCCCC
Confidence 4555558999999999 1122233346677899999999998 3 389999997653
No 84
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=79.57 E-value=1.1 Score=46.58 Aligned_cols=51 Identities=35% Similarity=0.433 Sum_probs=44.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPN---ISKMDKASLLGDAIAYINELQAK 492 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~---~~K~dKasIL~~AI~YIk~Lq~~ 492 (613)
+..=+..||+|--.+|+-|..||.++|. ..|+.|.-.|.-|-+||..|++-
T Consensus 73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 4566788999999999999999999995 67788888999999999998864
No 85
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=78.72 E-value=9.1 Score=37.12 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=49.9
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
.|.|.-++++|.|.+|...|...|+.+.+..+...++..+..+++.+.+ ..-.-++|..-|.++.+-
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d~~~i~qi~kQl~Kli~V 69 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-DDKVLEQITKQLNKLVDV 69 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-CHHHHHHHHHHHhcCccE
Confidence 4667778999999999999999999999998877764445555555543 344556777777776653
No 86
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=77.34 E-value=3.8 Score=42.39 Aligned_cols=53 Identities=38% Similarity=0.412 Sum_probs=44.5
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPN---ISKMDKASLLGDAIAYINELQAKLK 494 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~---~~K~dKasIL~~AI~YIk~Lq~~v~ 494 (613)
+..-+..||+|-..||..|..||-+||. ..|..|-.-|..|-.||.-|-....
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 4556788999999999999999999996 4566777789999999998876653
No 87
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.11 E-value=17 Score=31.92 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=47.0
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
..|-+..+.++|.|.+++..|...|+.+.+...-... ...-+.|.|.+.+. . .+.+.++|.++-
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~--~~~~~~~l~~L~ 79 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S--APALDPIIKSLR 79 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C--CHHHHHHHHHHH
Confidence 4566667888999999999999999999999876543 44557888888654 1 345555555443
No 88
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=76.71 E-value=9.6 Score=37.60 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=53.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
.|.|.-.+++|.|.+|...|...|+.+.+.++....+..+..+++-+.++... -++|...|.++.+-+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~-ieqL~kQL~KLidVl 71 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRT-IEQLTKQLYKLVNIL 71 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHH-HHHHHHHHHHHhHhh
Confidence 46777889999999999999999999999988765555555666666554443 678999999887754
No 89
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=76.36 E-value=10 Score=29.31 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=35.6
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEE
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIK 583 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk 583 (613)
|.|..++++|.+.++.+.|.+.++.|....+.... +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35677899999999999999999999888766554 5565555554
No 90
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=75.86 E-value=9.1 Score=31.20 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 545 LDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 545 ~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
+++|.|.+|+..+..-|+.+.+.++...++..+..+++.+.+ ....-++|..-|.++.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~-~~~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG-DDREIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES--CCHHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee-CchhHHHHHHHHhccCC
Confidence 367899999999999999999999988665555666665543 34455678888877765
No 91
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=73.91 E-value=21 Score=30.21 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=45.3
Q ss_pred cCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeeccccc----ccCCHHHHH
Q 048817 164 FPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRS----VPESLELVH 234 (613)
Q Consensus 164 F~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~----I~E~~~lv~ 234 (613)
|+.+.++.++++.++.++.+.+..... .+.........|++.++|+|+ .-|+|.+.+.+. -.++.++++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~Pl~~~~~~~G~l~~~~~~~~~~~~~~~~~~l~ 129 (149)
T smart00065 52 YPLGEGLAGRVAETGRPLNIPDVEADP--VFALDLLGRYQGVRSFLAVPLVADGELVGVLALHNKDSPRPFTEEDEELLQ 129 (149)
T ss_pred ecCCCChHHHHHHcCCeEEeechhhCC--ccccccccceeceeeEEEeeeeecCEEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 444456677777788888777654322 233334444556999999997 247888877621 133445555
Q ss_pred HHHHHh
Q 048817 235 SIRATF 240 (613)
Q Consensus 235 ~ik~~F 240 (613)
.+-..+
T Consensus 130 ~~~~~i 135 (149)
T smart00065 130 ALANQL 135 (149)
T ss_pred HHHHHH
Confidence 554443
No 92
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=73.81 E-value=3.1 Score=47.46 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=53.1
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeeccccc----ccCCHHHH
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRS----VPESLELV 233 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~----I~E~~~lv 233 (613)
.|..|+|+.|+++.+++++++.+...-.. +....-....|++.++|||+ .-|||.+.+... -.+|.+|+
T Consensus 68 ~~~~~~gi~g~v~~~~~pvii~Dv~~d~~--~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s~~~~~~ft~~d~~lL 145 (534)
T TIGR01817 68 RYRVGEGAIGQIVATGNSLVVPDVAAEPL--FLDRLSLYDPGPVPFIGVPIKADSETIGVLAADRDFRSRERLEEEVRFL 145 (534)
T ss_pred cccCCccHHHHHHhcCCeEEecccccCch--hhhccccccCCcceEEEEEEcCCCEEEEEEEEEeccccccccHHHHHHH
Confidence 46778999999999999999998753221 21111123568999999998 447999998753 34566666
Q ss_pred HHHHHHhc
Q 048817 234 HSIRATFS 241 (613)
Q Consensus 234 ~~ik~~F~ 241 (613)
..+-....
T Consensus 146 ~~lA~~ia 153 (534)
T TIGR01817 146 EMVANLIG 153 (534)
T ss_pred HHHHHHHH
Confidence 65554443
No 93
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=72.99 E-value=13 Score=29.85 Aligned_cols=59 Identities=7% Similarity=0.094 Sum_probs=41.7
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLST--GNDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~--~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
+-+..+.+.|.+.+|.+.|.++|+.+.+..+.. .++.....+.+.. ....++.++|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~-----~~~~~~~~~l~~~ 62 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE-----PVPDEVLEELRAL 62 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC-----CCCHHHHHHHHcC
Confidence 345778899999999999999999998886554 3455555555443 2244777777654
No 94
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=72.88 E-value=13 Score=32.52 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=53.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
.|.+...+++|.|.+|-..|...|+.+.+.++....+..+.-+++-+..+..-.-++|..-|.++.+-
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidV 71 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINV 71 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccE
Confidence 46677789999999999999999999999998888877777777777534555556777777776553
No 95
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=70.73 E-value=14 Score=44.28 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=49.5
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG--NDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~--~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.+.|+|.+.++.|+|.+|..+|.+.++.|.++++... ++.....|++++.+-.++. .|+..|.+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~--~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLG--RVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHH--HHHHHHhc
Confidence 3678899999999999999999999999999998765 4666677888885444443 45555544
No 96
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=69.76 E-value=20 Score=34.98 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=48.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
.|.|.-++++|.|.+|...|...|+.+.+..+....+..+.-+++.+.+ ....-++|..-|.++.+-
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~-~~~~i~qi~kQl~KLidV 70 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG-DEQVIEQITKQLNKLIDV 70 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC-CHHHHHHHHHHHhccccE
Confidence 4667778999999999999999999999998876654444445555533 334445777777776653
No 97
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=67.71 E-value=24 Score=37.19 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=53.7
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG--NDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~--~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
....+.+.|+.+.|+.+.|-.-|-+.|..+++++--.. .+++|.-+.... ++...+.+.|.+++..+.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~~~~~~l~~~f~~~a~~f 78 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGPLDREALRAAFAPLAEEF 78 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCcccHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999999965422 344554444443 223488999999999877654
No 98
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.65 E-value=20 Score=42.98 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=51.1
Q ss_pred cceEEeCCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEeCCC
Q 048817 528 VDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLS-TGNDMVFHTFVIKSQGS 587 (613)
Q Consensus 528 VeV~i~g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs-~~~~~~~~t~~vk~~~~ 587 (613)
+.++...+...|-|.|+.++.+++.|..++...|++|+.|.+- +.+|..+-||.|.-..+
T Consensus 676 ~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g 736 (867)
T COG2844 676 ISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDG 736 (867)
T ss_pred eeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCC
Confidence 3455566778999999999999999999999999999999984 56788999999875544
No 99
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=67.42 E-value=6.2 Score=31.46 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=39.4
Q ss_pred EEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 540 RVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 540 rI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
-+.+.+++|.+.+|+..|.+.++.+...+....++..+..+.+... .-+++.+.|.++
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-----~l~~li~~l~~~ 60 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-----VSEELLEALRAI 60 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-----CCHHHHHHHHcC
Confidence 3467889999999999999999999777554444555455554442 223566666543
No 100
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.13 E-value=34 Score=28.80 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=43.6
Q ss_pred EEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 541 VSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 541 I~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
+..+.++|.|.+++..++..++.+.+...-.. +...-+.|.|.+.+.. +++.++|.++-
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~----~~i~~~l~~l~ 64 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ----RRLDELVQLLK 64 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH----HHHHHHHHHHH
Confidence 34467899999999999999999999987654 3445678888886543 36666666553
No 101
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=66.77 E-value=35 Score=29.12 Aligned_cols=65 Identities=8% Similarity=0.118 Sum_probs=46.7
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
.|.+.-.+++|.|.+|+..++.-|+.|.+.++....+.-+..+++-+. ..-.-++|..-|.++.+
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~~~~i~ql~kQL~KL~d 69 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--SERPIDLLSSQLNKLVD 69 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--CCchHHHHHHHHhcCcC
Confidence 456666789999999999999999999999888755444455554443 34444567766766654
No 102
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=66.56 E-value=17 Score=43.11 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=49.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.+.|+|.+.++.|+|.+|+.+|.+.++.|.++++... ++.....|++++.+-.++. .|+..|.+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~L~--~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYKHLL--KIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHHHHH--HHHHHHhC
Confidence 4678999999999999999999999999999998776 4666677888885444443 34444443
No 103
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=65.84 E-value=18 Score=36.18 Aligned_cols=68 Identities=6% Similarity=0.052 Sum_probs=54.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
..+.|.+.+++|+|+...|-++|.++|..+..++.+..++.+--.+.|.. . ....++|..+|..+...
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~--~-~~~~~~le~~L~~l~~~ 74 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG--S-WNAITLIESTLPLKGAE 74 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC--C-hhHHHHHHHHHHhhhhh
Confidence 45789999999999999999999999999999999999987766666632 2 23666888888776643
No 104
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=65.18 E-value=26 Score=29.95 Aligned_cols=66 Identities=8% Similarity=0.029 Sum_probs=48.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
.|.+...+++|.|.+|...+...|..+.+.++...++..+.-+++.+.+. .-.-++|..-|.++.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~-~~~i~qi~kQL~KLid 69 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT-ENEATLLVSQLKKLIN 69 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC-HHHHHHHHHHHhCCcC
Confidence 46677789999999999999999999999988877766666666655333 3344466666666654
No 105
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=64.42 E-value=20 Score=42.71 Aligned_cols=64 Identities=5% Similarity=0.051 Sum_probs=48.4
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.+.|+|.+.++.|+|.+|..+|.+.++.|.++++.... +.....|++++.+-.++. .|...|.+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~L~--~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDRVHLA--NIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCHHHHH--HHHHHHhC
Confidence 46789999999999999999999999999999987654 455667888885433333 34444443
No 106
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=62.78 E-value=10 Score=45.50 Aligned_cols=61 Identities=20% Similarity=0.083 Sum_probs=43.3
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEcCC-----ceEeeccccc
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDA-----GVVELGSVRS 225 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~~~-----GVvELGSt~~ 225 (613)
.|+.|+|+.|+++.++.++++.+...-+... .+.. +...+++.++|||+.. |||.+.+...
T Consensus 67 ~l~~geGi~G~Va~tg~pV~V~Dv~~dprf~-~~~~-~~~~~~~S~L~VPL~~~geVIGVL~v~~~~~ 132 (748)
T PRK11061 67 TLAFDEGIVGLVGRLAEPINLADAQKHPSFK-YIPS-VKEERFRAFLGVPIIYRRQLLGVLVVQQREL 132 (748)
T ss_pred eccCCcchHHHHhccCceEEECCcccCcccc-cCcc-ccCccceEEEEEEEeeCCEEEEEEEEeeCCC
Confidence 5788999999999999999998776432211 1111 1246899999999833 6777666654
No 107
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=61.37 E-value=43 Score=33.48 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=51.8
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC----CeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN----DMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~----~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
..|.|.-.+++|.+.+|-+.|-++++.|..-+..+.. +.-++.+.+++.-......++|.++|.++++.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTEL 169 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 5678888899999999999999999999988766543 333344444443344555678888898888765
No 108
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.39 E-value=38 Score=27.49 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=39.4
Q ss_pred EEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 540 RVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 540 rI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
+|.-+.++|-|.++++.|.+ +.+|...+....+ +.....+.+++.+.. -.++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDRE--DLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 56678899999999999999 9999988776543 233334556664322 22355555543
No 109
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=56.56 E-value=56 Score=31.12 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=50.5
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLS-TGNDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs-~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
..+.+.+.-++|-|.|+++++++-..++.|...+=+ ..+++.--|+.+... +-+..-++|+.+|.+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s-sm~~~V~~ii~kl~k 137 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS-SMEKDVDKIIEKLRK 137 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch-hhhhhHHHHHHHHhc
Confidence 346777888899999999999999999999998744 467777777777764 344455667776654
No 110
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.96 E-value=64 Score=29.63 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=44.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
..|-+..+++.|.|.+||..|...|+.+.+...-... ...-+.|.|.+.+... ++..+|..+-
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~----~~~~aL~~L~ 105 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRS----DLLQLISSLR 105 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHH----HHHHHHHHHH
Confidence 3455555788999999999999999999999876543 3344777787755322 3555555443
No 111
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.94 E-value=73 Score=27.14 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=40.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
+.+++|.-+.++|-|.+++++|- +..|......... +.....+.+++.++ .--.++++.+|.+
T Consensus 1 e~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-~~~~~~i~~~L~~ 64 (85)
T cd04906 1 EALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-AEELAELLEDLKS 64 (85)
T ss_pred CeEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-HHHHHHHHHHHHH
Confidence 35688899999999999999999 5566655554432 44445566776442 1122355555543
No 112
>PRK08198 threonine dehydratase; Provisional
Probab=51.08 E-value=78 Score=34.80 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=49.0
Q ss_pred eCCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 533 AHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-----NDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 533 ~g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-----~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.+..+.+.|.-++++|.|.+|++.|.+.|..|...+.... .+..-..+.+++.+.. ..++|+++|.+
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE--HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 3556789999999999999999999999999998876642 3455556666663222 34567776654
No 113
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=49.03 E-value=75 Score=34.58 Aligned_cols=66 Identities=8% Similarity=0.178 Sum_probs=47.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 534 HDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-----NDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 534 g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-----~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
+..+.|.|.-++++|.|.++++.+.+.+..|++...... .+.....+.+++.+ .-..++|+++|.+
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 456788889999999999999999999999998876532 24555556666532 2233466666654
No 114
>PRK06382 threonine dehydratase; Provisional
Probab=48.30 E-value=71 Score=35.31 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=47.6
Q ss_pred eCCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE-----eeCCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 533 AHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLS-----TGNDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 533 ~g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs-----~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.+..+.|.|.-++++|.|.+|.+.|.+.+++|++.... ...+....+|.++..+ .--.++|+++|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~--~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG--QDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 34567788888999999999999999999999988764 2234555666666642 1223466666654
No 115
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=46.35 E-value=5.4 Score=46.55 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=52.2
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHhhcCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048817 440 EEPLNHVEAERQRREKLNQRFYALRAVVPNI-----SKMDKASLLGDAIAYINELQAKLKVMEAERENL 503 (613)
Q Consensus 440 ~~~~~H~~~ER~RR~kln~~f~~LrslvP~~-----~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l 503 (613)
.++..|.-+|.+||..++-.|..|-+++-+. .|+.+..-+..++.||..++.+...+.++-..+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~l 718 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSL 718 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhh
Confidence 4579999999999999999999999998763 466777779999999999888766665544333
No 116
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=46.14 E-value=86 Score=37.47 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=54.3
Q ss_pred EEEE-EccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 538 VVRV-SCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 538 ~IrI-~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
.+.| -|+++.|.++++...|--+++.|++|++.+ ++..+..|.|....+....+..|.+.+.+-
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 612 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSG 612 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHh
Confidence 4444 458999999999999999999999999999 888899999998777777777888777643
No 117
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.93 E-value=1.1e+02 Score=26.15 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=30.0
Q ss_pred EEEEEc---cCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 048817 538 VVRVSC---PLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKS 584 (613)
Q Consensus 538 ~IrI~c---~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~ 584 (613)
+|.|.. +...+.+.+|+++|.+.++.|-.... ..+. .+|+++-
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~s--ISftV~~ 48 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVS--ISLTLDP 48 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCE--EEEEEEh
Confidence 455544 45678999999999999999998843 3322 4555553
No 118
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=42.19 E-value=1.4e+02 Score=26.82 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=50.2
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
...|.+-..+++|.|.+|...+..-|..+.+.++....+..+.-+++-+.+ .-.-++|+.-|.++.+
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~--~~~i~Qi~kQL~KLid 74 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND--DQRLEQMISQIEKLED 74 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC--chHHHHHHHHHhCCcC
Confidence 346778888999999999999999999999988887776666666665542 2345567666766654
No 119
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=41.23 E-value=68 Score=26.88 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=34.6
Q ss_pred CccceEEeCCeEEEEEEccCCC------ChHHHHHHHHHhCCCeEEEEEEEee
Q 048817 526 PDVDIQAAHDEVVVRVSCPLDS------HPASRVIQAFKDAQITVVESKLSTG 572 (613)
Q Consensus 526 ~~VeV~i~g~ev~IrI~c~~r~------~~l~~Im~aLeel~L~V~~asvs~~ 572 (613)
..|.++..++.+.|++.+.... .-+..+.++|...|+.+.+.++...
T Consensus 27 v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 4567777889999999987542 2378899999999999999877643
No 120
>PRK11899 prephenate dehydratase; Provisional
Probab=40.73 E-value=1.5e+02 Score=31.46 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=50.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHH---hhhccCCC
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSC---ESSSIQPL 609 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~---~~~~~~~~ 609 (613)
...|-+..++++|.|.++|.+|...|+.......-.. +...-|.|.|.+.+. ...+.+..||.+ ....+..|
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~--~~d~~v~~aL~~l~~~~~~~kvL 269 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH--PEDRNVALALEELRFFSEEVRIL 269 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC--CCCHHHHHHHHHHHHhcCcEEEe
Confidence 3445555578999999999999999999999987655 455778888998664 233345555554 44444444
No 121
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=40.23 E-value=18 Score=32.52 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=44.3
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCcc--------------chhhhhhhhcCccEEEEEEc-----CCceEeeccc
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDY--------------CVRSFLAKSARIQTIVLIST-----DAGVVELGSV 223 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~--------------~~R~~~A~saGIqTivciP~-----~~GVvELGSt 223 (613)
.+..+.+..|+++.++.++.+.+....+... +.+..++ ..|+++++|+|+ .-|||.|.++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~l~vPi~~~g~~~G~l~l~~~ 129 (154)
T PF01590_consen 51 RLSMDESICGQVLQSREPIVISDVAADPRFAPQIAAQSALRALSSAERPFLA-EYGVRSYLCVPIISGGRLIGVLSLYRT 129 (154)
T ss_dssp EEETTSSHHHHHHHHTSCEEESSSGGSTTSSCHHHHHHTTBTTTHHHHHHHH-TTTESEEEEEEEEETTEEEEEEEEEEE
T ss_pred cccccccHHHHHHhCCCeEeeccccccccccccccccccccccccccccccc-cccCceeeEeeeecccCcEEEEEEEEC
Confidence 4445567799999999999998875433221 2222222 789999999998 4578988888
Q ss_pred cc
Q 048817 224 RS 225 (613)
Q Consensus 224 ~~ 225 (613)
..
T Consensus 130 ~~ 131 (154)
T PF01590_consen 130 RP 131 (154)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 122
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=38.09 E-value=33 Score=24.59 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 048817 449 ERQRREKLNQRFYALRA 465 (613)
Q Consensus 449 ER~RR~kln~~f~~Lrs 465 (613)
=|+||+.++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 47899999999999985
No 123
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=37.90 E-value=23 Score=34.26 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHH
Q 048817 448 AERQRREKLNQRFYALRAVVPNI--SKMDKASLLGDAIAYINELQ 490 (613)
Q Consensus 448 ~ER~RR~kln~~f~~LrslvP~~--~K~dKasIL~~AI~YIk~Lq 490 (613)
.||.|-.++++.|.-|+.|+|.. .++.+.--|.-+.+||..|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 58889999999999999999973 33332222444445554443
No 124
>PRK08526 threonine dehydratase; Provisional
Probab=37.29 E-value=1.3e+02 Score=33.43 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=48.3
Q ss_pred eCCeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEEeCCCccccHHHHHHHHH
Q 048817 533 AHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-----DMVFHTFVIKSQGSEQLTKEKLIAAFS 600 (613)
Q Consensus 533 ~g~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-----~~~~~t~~vk~~~~~~~t~e~L~~aL~ 600 (613)
.+..+.+.|.-++++|.|.++++.+-+.+.+|++....... +.....+.+++.+.. -.++|+++|.
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~l~ 393 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE--HQEEIRKILT 393 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH--HHHHHHHHHH
Confidence 35678899999999999999999999999999999886533 335555667764322 2335666554
No 125
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=36.95 E-value=23 Score=32.23 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=31.9
Q ss_pred CCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc
Q 048817 166 RGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST 213 (613)
Q Consensus 166 ~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~ 213 (613)
.|.+..-..-..+.-+|+..++ ++.+.|.+.---...| |+|||+|-
T Consensus 55 ~~~~g~~~i~i~~g~vrv~~s~-CpdkiCv~~G~I~~~G-~~IVCLPn 100 (113)
T PF07009_consen 55 DGDGGYNTIEIKDGKVRVIESD-CPDKICVKTGWISRPG-QSIVCLPN 100 (113)
T ss_dssp ETTTCEEEEEEETTEEEEEEES-TSS-HHHHS-SB-STT--EEEETTT
T ss_pred ecCCcEEEEEEECCEEEEEECC-CCCcchhhCCCcCCCC-CEEEEcCC
Confidence 5566677888889999999888 7889998653322333 89999984
No 126
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=36.18 E-value=82 Score=37.27 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhh-hhcCccEEEEEEc-----CCceEeecccccc---cCCHHHHHH
Q 048817 165 PRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLA-KSARIQTIVLIST-----DAGVVELGSVRSV---PESLELVHS 235 (613)
Q Consensus 165 ~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A-~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv~~ 235 (613)
+.+.|+.|+++.+|.|+=+.+...-....+.+.... ...+|++++|||. .-|||.+++...- .+|..+++.
T Consensus 253 ~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~~~~~~F~~~dl~lL~~ 332 (686)
T PRK15429 253 DEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLKLLRQ 332 (686)
T ss_pred CcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEEEEEEeeCCCCcCCHHHHHHHHH
Confidence 345589999999999997755432222222332221 2357999999998 3589999865422 235555555
Q ss_pred HHHH
Q 048817 236 IRAT 239 (613)
Q Consensus 236 ik~~ 239 (613)
|-..
T Consensus 333 iA~~ 336 (686)
T PRK15429 333 IAER 336 (686)
T ss_pred HHHH
Confidence 5443
No 127
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=35.82 E-value=1.1e+02 Score=28.76 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=39.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEE
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIK 583 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk 583 (613)
.|.|-.++++|-|..+..+|.+.|+.+..-++.-.+++.+.-++|-
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~ 50 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVD 50 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcC
Confidence 4667778999999999999999999999999888888888776653
No 128
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=35.59 E-value=1e+02 Score=36.87 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=47.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
.+.|+|.-.++.|+|.+|+++|-+.+..|.++++... ++.....|++++..-.++. .|+..|.++
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~~~L~--~i~~~l~~~ 692 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNLNHLG--RVLARLKQL 692 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcHHHHH--HHHHHHhcC
Confidence 4668888899999999999999999999999998775 4555556667774433333 444444443
No 129
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=35.50 E-value=79 Score=28.08 Aligned_cols=49 Identities=6% Similarity=0.095 Sum_probs=41.1
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeC
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQ 585 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~ 585 (613)
+.|.|.-.+|.|..+.|..+|-++++.++..+=+...+.+-..+.|...
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence 5677888899999999999999999999999877778877666666653
No 130
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=35.44 E-value=1.7e+02 Score=38.25 Aligned_cols=65 Identities=15% Similarity=0.366 Sum_probs=48.8
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEE---Ee--eCCeEEEEEEEEeCCCccccHHHHHHHH
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKL---ST--GNDMVFHTFVIKSQGSEQLTKEKLIAAF 599 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asv---s~--~~~~~~~t~~vk~~~~~~~t~e~L~~aL 599 (613)
+.+.++|....+..+|++||-.|+++||.|+.-.- .. .....+|.|.+....+.....+++...|
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~ 557 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERF 557 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHH
Confidence 45789999888899999999999999999998863 33 2346889999998766544433443333
No 131
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=34.74 E-value=2.3e+02 Score=29.28 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=42.9
Q ss_pred eEEEEEEccCCC--ChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeCCCccccHHHHHHHHH
Q 048817 536 EVVVRVSCPLDS--HPASRVIQAFKDAQITVVESKLSTG--NDMVFHTFVIKSQGSEQLTKEKLIAAFS 600 (613)
Q Consensus 536 ev~IrI~c~~r~--~~l~~Im~aLeel~L~V~~asvs~~--~~~~~~t~~vk~~~~~~~t~e~L~~aL~ 600 (613)
...++|.|.... +....+++.|++.++.+.+.++... .+.+.-++.+.........-|+++..|+
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~ 210 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIG 210 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHh
Confidence 456788897655 4578999999999999999988554 3445555555554333344455555554
No 132
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=34.04 E-value=39 Score=38.53 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=53.1
Q ss_pred ecCCCCC-ccceeeeCCCeEEEeCCCCCCCccchhhh--hhhhcCccEEEEEEc-----CCceEeeccccc---ccCCHH
Q 048817 163 SFPRGEG-GPGKCFASGKHVWLLDALKLSSDYCVRSF--LAKSARIQTIVLIST-----DAGVVELGSVRS---VPESLE 231 (613)
Q Consensus 163 sF~~G~G-lpG~a~~sg~~~Wl~~~~~~~~~~~~R~~--~A~saGIqTivciP~-----~~GVvELGSt~~---I~E~~~ 231 (613)
.|..|+| ..|.++.+|.++.+.+....+ ..+.|.. -+.-.||..++|||+ .-|||-+-+... -.+|..
T Consensus 65 ~~~~geGP~l~av~~~g~~v~v~~~~~~p-~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~GvL~l~~~~~~~f~~~~~~ 143 (509)
T PRK05022 65 RFALEEHPRLEAILRAGDPVRFPADSELP-DPYDGLIPGVQESLPVHDCMGLPLFVDGRLIGALTLDALDPGQFDAFSDE 143 (509)
T ss_pred ccCCCcchHHHHHHhcCCeEEEecCCCCC-cccccccccccccCCcceEEEEEEEECCEEEEEEEEeeCCCCcCCHHHHH
Confidence 6788898 678898889999888654322 2232221 133468999999998 457888877653 344567
Q ss_pred HHHHHHHHhcc
Q 048817 232 LVHSIRATFSS 242 (613)
Q Consensus 232 lv~~ik~~F~~ 242 (613)
++..+-+.+..
T Consensus 144 ~l~~~a~~~a~ 154 (509)
T PRK05022 144 ELRALAALAAA 154 (509)
T ss_pred HHHHHHHHHHH
Confidence 77766665544
No 133
>PRK11898 prephenate dehydratase; Provisional
Probab=30.56 E-value=1.9e+02 Score=30.51 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=47.1
Q ss_pred EEEEEEccC-CCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHH---HHHhhhccCCC
Q 048817 537 VVVRVSCPL-DSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAA---FSCESSSIQPL 609 (613)
Q Consensus 537 v~IrI~c~~-r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~a---L~~~~~~~~~~ 609 (613)
..|-+..+. +.|.|.+++..|...++.+.+....... ...-+.|.|.+.+. ...+.+..+ |.+....+..|
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~--~~~~~~~~al~~L~~~~~~~k~L 272 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH--IDDVLVAEALKELEALGEDVKVL 272 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc--CCCHHHHHHHHHHHHhcCcEEEE
Confidence 445566655 4899999999999999999999876544 33447778887653 232244444 44444444443
No 134
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.01 E-value=2e+02 Score=24.63 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=37.0
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhccCC
Q 048817 545 LDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSIQP 608 (613)
Q Consensus 545 ~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~~~ 608 (613)
..-|.+.++|++|+++|+.+-|. -+.-|.+ +++++- .+++.+.+...+.++-..++|
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~--PSGID~~--Siii~~---~~~~~~~~~~i~~~i~~~~~p 69 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHM--PSGIDDI--SIIIRD---NQLTDEKEQKILAEIKEELHP 69 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeee--cCCCccE--EEEEEc---cccchhhHHHHHHHHHHhcCC
Confidence 34588999999999999999998 4444443 444443 345554555555555555544
No 135
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=28.38 E-value=2.8e+02 Score=21.46 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEE
Q 048817 545 LDSHPASRVIQAFKDAQITVVESK 568 (613)
Q Consensus 545 ~r~~~l~~Im~aLeel~L~V~~as 568 (613)
...+.+.+|+++|.+.++.|....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 456899999999999999999984
No 136
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=27.56 E-value=2.4e+02 Score=20.57 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEE
Q 048817 546 DSHPASRVIQAFKDAQITVVESKLS 570 (613)
Q Consensus 546 r~~~l~~Im~aLeel~L~V~~asvs 570 (613)
..+.+.+++++|.+.++.+.....+
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 5678999999999999999887544
No 137
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=26.89 E-value=3.6e+02 Score=22.16 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=24.3
Q ss_pred EEEEEc---cCCCChHHHHHHHHHhCCCeEEEEE
Q 048817 538 VVRVSC---PLDSHPASRVIQAFKDAQITVVESK 568 (613)
Q Consensus 538 ~IrI~c---~~r~~~l~~Im~aLeel~L~V~~as 568 (613)
+|.|.+ ....+.+.+|+++|.+.++.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455543 3457889999999999999998874
No 138
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=26.76 E-value=2.8e+02 Score=21.35 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=25.6
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 048817 538 VVRVSCP---LDSHPASRVIQAFKDAQITVVESKLST 571 (613)
Q Consensus 538 ~IrI~c~---~r~~~l~~Im~aLeel~L~V~~asvs~ 571 (613)
+|.|.+. ...+.+.+|+++|.+.++.|.-.+.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555553 456889999999999999997775433
No 139
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=26.59 E-value=2.5e+02 Score=20.96 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=25.8
Q ss_pred EEEEEcc---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 048817 538 VVRVSCP---LDSHPASRVIQAFKDAQITVVESKLST 571 (613)
Q Consensus 538 ~IrI~c~---~r~~~l~~Im~aLeel~L~V~~asvs~ 571 (613)
+|.|.+. ...+.+.+++++|.+.++.+.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4556543 456789999999999999998885543
No 140
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=24.47 E-value=3.5e+02 Score=23.70 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=42.2
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
+.+....++..|.+|+.+.+.-|+.|...+++..-+.....+.+-+.+. -+-+-|..-|+++.+
T Consensus 6 ldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~--R~~~lL~~QLeKl~D 69 (86)
T COG3978 6 LDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD--RSVDLLTSQLEKLYD 69 (86)
T ss_pred EeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC--CChHHHHHHHHHHcc
Confidence 4556667889999999999999999999999887444433333333222 223344445555543
No 141
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=23.87 E-value=2.4e+02 Score=32.23 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=38.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeE-E-EEEEEEeCCC
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMV-F-HTFVIKSQGS 587 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~-~-~t~~vk~~~~ 587 (613)
+.|-+..+.+.|.|.++|..++..|+.+.+...-...... - +.|.|.+.+.
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~ 84 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF 84 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC
Confidence 4555666778999999999999999999999876554332 3 5777877543
No 142
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=23.22 E-value=2.3e+02 Score=29.48 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=31.3
Q ss_pred CccccH-HHHHHHHHHHHHHHHHhhcCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 442 PLNHVE-AERQRREKLNQRFYALRAVVPNISKMD-KASLLGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 442 ~~~H~~-~ER~RR~kln~~f~~LrslvP~~~K~d-KasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
+++|.- -|+--|.||+.|..+=-+ .| |-.-..+-=.-|++|.++.+.|..+.+.|.
T Consensus 60 RL~HLS~EEK~~RrKLKNRVAAQta-------RDrKKaRm~eme~~i~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLKNRVAAQTA-------RDRKKARMEEMEYEIKDLTEENEILQNENDSLR 117 (292)
T ss_pred hhcccCHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377765 566677788888766433 23 222233333335666666666665554443
No 143
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.23 E-value=4.7e+02 Score=21.84 Aligned_cols=37 Identities=8% Similarity=0.041 Sum_probs=27.4
Q ss_pred cCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEe
Q 048817 544 PLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKS 584 (613)
Q Consensus 544 ~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~ 584 (613)
+...+.+.+|+++|.+.++.|-.... .. .-.+|++.-
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~--s~--~~iSftv~~ 48 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT--SE--ISVALTLDN 48 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee--cC--CEEEEEEec
Confidence 45688999999999999999998843 33 334555553
No 144
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.74 E-value=1.4e+02 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 048817 479 LGDAIAYINELQAKLKVMEAERENL 503 (613)
Q Consensus 479 L~~AI~YIk~Lq~~v~~Le~~~~~l 503 (613)
+..||+-|.-||.++++|+.++..+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6779999999999999999875544
No 145
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=21.44 E-value=3.5e+02 Score=30.64 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=44.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN-DMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~-~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
..|-+..+++.|.|.+||..++..|+.+.+...-... ...-+.|.|.+.+.....-.++++.|.+..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 4555556778999999999999999999999875443 334467778876543211123444444433
No 146
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.28 E-value=4e+02 Score=20.68 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 048817 545 LDSHPASRVIQAFKDAQITVVESKLST 571 (613)
Q Consensus 545 ~r~~~l~~Im~aLeel~L~V~~asvs~ 571 (613)
.+.+.+.+++++|.+.+++|.-...+.
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 456889999999999999997765444
No 147
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.94 E-value=1.5e+02 Score=25.27 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048817 479 LGDAIAYINELQAKLKVMEAERENLSG 505 (613)
Q Consensus 479 L~~AI~YIk~Lq~~v~~Le~~~~~l~~ 505 (613)
+..||+-|.-||-.+++|+.++..|..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 677999999999999999988876653
No 148
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=20.75 E-value=4.8e+02 Score=26.67 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=40.4
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
..+++.|... ...++++.|.+.++.+.+.++...++.....+.++.+ .....+++...|++
T Consensus 145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~ 205 (215)
T PRK09977 145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH--ATTSIEDLYRLLKG 205 (215)
T ss_pred EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC--CCCCHHHHHHHHhc
Confidence 3566667543 3688999999999999999876554443345555554 34555667666654
No 149
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=20.73 E-value=39 Score=39.87 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=47.2
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCC-----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPN-----ISKMDKASLLGDAIAYINELQAKLKVMEAERE 501 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~-----~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~ 501 (613)
...|+.++||||-.+.++|..|-+|.|- ..+..++|||. +.|+.+++.-+.+.+..+
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 4689999999999999999999999994 45678999998 788888887777665433
No 150
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=20.50 E-value=81 Score=27.20 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=35.1
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeeccccccc
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSVP 227 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I~ 227 (613)
.++.+.++.++++.++.+ +..... ... . ..+++.++|||. .-|||.+++...-.
T Consensus 49 ~l~~~~~~~~~~~~~~~~-~~~~~~--~~~----~----~~~~~s~~~vPl~~~~~~~Gvl~~~~~~~~~ 107 (129)
T PF13492_consen 49 SLPEDDPLIGRALETGEP-VSVPDI--DER----D----FLGIRSLLVVPLRSRDRVIGVLCLDSREPEE 107 (129)
T ss_dssp CEETTSHHHHHHHHHTS--EEESTC--CC-----T----TTTTCEEEEEEEEETTEEEEEEEEEECTTCG
T ss_pred cCCCCccHHHHHHhhCCe-EEeccc--ccc----c----CCCCCEEEEEEEeECCEEEEEEEEEECCCCC
Confidence 444677888888888876 433221 111 1 167789999998 46899998876543
Done!