Query 048817
Match_columns 613
No_of_seqs 317 out of 1348
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 00:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.5 5.4E-15 1.9E-19 125.7 6.6 63 442-504 7-70 (82)
2 1nkp_B MAX protein, MYC proto- 99.4 7.8E-14 2.7E-18 118.6 6.2 63 442-504 3-67 (83)
3 1hlo_A Protein (transcription 99.4 1.1E-13 3.6E-18 117.1 6.2 64 441-504 12-77 (80)
4 1nkp_A C-MYC, MYC proto-oncoge 99.4 2.3E-13 7.8E-18 117.1 6.6 63 442-504 7-72 (88)
5 4h10_B Circadian locomoter out 99.4 1.1E-13 3.7E-18 114.2 4.2 57 441-497 8-65 (71)
6 1an4_A Protein (upstream stimu 99.4 1.2E-13 4.1E-18 112.2 3.2 53 441-493 5-63 (65)
7 4ati_A MITF, microphthalmia-as 99.4 3.9E-13 1.3E-17 121.7 6.7 61 441-501 27-91 (118)
8 1a0a_A BHLH, protein (phosphat 99.4 1.3E-13 4.4E-18 111.5 1.8 52 442-493 3-61 (63)
9 1nlw_A MAD protein, MAX dimeri 99.4 1.2E-12 4E-17 110.7 7.7 63 442-504 2-67 (80)
10 4h10_A ARYL hydrocarbon recept 99.3 8E-13 2.7E-17 109.8 2.5 50 442-491 10-63 (73)
11 3u5v_A Protein MAX, transcript 99.2 3.5E-12 1.2E-16 106.8 3.9 58 440-497 4-65 (76)
12 2ql2_B Neurod1, neurogenic dif 98.9 7.3E-10 2.5E-14 88.6 4.9 53 442-494 3-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 98.9 6.1E-10 2.1E-14 91.2 3.8 53 441-493 12-66 (68)
14 4f3l_A Mclock, circadian locom 98.7 5.9E-09 2E-13 110.1 5.7 52 441-492 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.5 3E-08 1E-12 105.9 3.8 52 441-492 13-68 (387)
16 2lfh_A DNA-binding protein inh 98.5 4.7E-08 1.6E-12 79.5 2.6 44 448-491 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.1 5.2E-06 1.8E-10 70.1 6.6 49 453-501 4-56 (83)
18 4aya_A DNA-binding protein inh 97.7 5.6E-05 1.9E-09 65.7 6.2 48 448-495 32-82 (97)
19 1zpv_A ACT domain protein; str 96.4 0.028 9.5E-07 46.8 11.0 68 536-605 5-72 (91)
20 1f5m_A GAF; CGMP binding, sign 94.3 0.019 6.5E-07 54.6 2.8 74 162-241 92-174 (180)
21 1u8s_A Glycine cleavage system 94.3 0.16 5.6E-06 48.2 9.4 67 536-605 6-72 (192)
22 2nyi_A Unknown protein; protei 93.4 0.27 9.2E-06 47.2 9.1 68 536-606 93-166 (195)
23 2nyi_A Unknown protein; protei 93.3 0.29 9.9E-06 47.0 9.1 68 536-603 5-73 (195)
24 2ko1_A CTR148A, GTP pyrophosph 93.2 0.22 7.6E-06 40.6 7.1 65 536-602 5-69 (88)
25 3trc_A Phosphoenolpyruvate-pro 93.2 0.095 3.2E-06 46.5 5.2 74 163-238 72-153 (171)
26 1u8s_A Glycine cleavage system 92.8 0.44 1.5E-05 45.2 9.5 69 536-606 93-169 (192)
27 3k2n_A Sigma-54-dependent tran 92.6 1.1 3.8E-05 39.9 11.5 75 163-238 72-158 (177)
28 2e4s_A CAMP and CAMP-inhibited 92.4 0.027 9.4E-07 51.2 0.5 76 162-239 84-169 (189)
29 1vhm_A Protein YEBR; structura 92.3 0.11 3.8E-06 50.2 4.6 76 161-242 86-169 (195)
30 3ci6_A Phosphoenolpyruvate-pro 92.0 0.14 4.7E-06 44.8 4.5 74 163-238 74-155 (171)
31 3dba_A CONE CGMP-specific 3',5 91.4 0.064 2.2E-06 49.9 1.8 76 162-239 81-166 (180)
32 2vjw_A GAF-B, GAF family prote 90.8 0.13 4.3E-06 46.8 3.0 49 162-223 54-107 (149)
33 3e0y_A Conserved domain protei 90.7 0.14 4.7E-06 45.8 3.2 76 163-240 77-160 (181)
34 3mmh_A FRMSR, methionine-R-sul 90.5 0.094 3.2E-06 49.4 1.9 74 162-241 76-157 (167)
35 2qyb_A Membrane protein, putat 90.3 1.1 3.7E-05 40.4 8.9 74 166-241 70-153 (181)
36 3oov_A Methyl-accepting chemot 89.1 0.38 1.3E-05 42.4 4.7 73 167-239 72-155 (169)
37 3n0v_A Formyltetrahydrofolate 88.9 1.7 5.9E-05 44.4 10.1 69 536-606 8-78 (286)
38 3hcy_A Putative two-component 88.9 0.57 1.9E-05 41.0 5.7 71 166-237 52-130 (151)
39 2w3g_A DOSS, two component sen 88.0 0.31 1.1E-05 42.1 3.3 74 163-239 56-138 (153)
40 3obi_A Formyltetrahydrofolate 87.5 2.8 9.6E-05 42.9 10.6 71 535-606 5-77 (288)
41 3ksh_A Putative uncharacterize 87.4 0.25 8.7E-06 46.4 2.4 73 162-240 75-155 (160)
42 3rfb_A Putative uncharacterize 87.2 0.31 1.1E-05 46.3 3.0 76 162-243 76-159 (171)
43 3p96_A Phosphoserine phosphata 86.5 1.6 5.4E-05 46.1 8.3 71 535-606 11-81 (415)
44 3o1l_A Formyltetrahydrofolate 86.4 3.3 0.00011 42.7 10.4 70 536-606 22-93 (302)
45 3lou_A Formyltetrahydrofolate 85.9 3.2 0.00011 42.6 9.9 72 535-606 9-83 (292)
46 2f1f_A Acetolactate synthase i 83.6 1.9 6.4E-05 40.7 6.5 66 538-604 5-70 (164)
47 2zmf_A CAMP and CAMP-inhibited 81.4 0.67 2.3E-05 41.5 2.4 76 162-238 84-168 (189)
48 2jhe_A Transcription regulator 81.2 4 0.00014 37.0 7.7 62 538-604 2-63 (190)
49 3ibj_A CGMP-dependent 3',5'-cy 80.0 0.75 2.6E-05 52.1 2.7 76 162-239 244-330 (691)
50 3nrb_A Formyltetrahydrofolate 79.5 6.3 0.00021 40.3 9.2 69 535-606 6-76 (287)
51 2pc6_A Probable acetolactate s 79.4 2.3 7.9E-05 40.1 5.4 64 538-604 6-71 (165)
52 1ykd_A Adenylate cyclase; GAF 76.9 1.2 4.2E-05 45.8 3.0 63 162-224 261-331 (398)
53 2fgc_A Acetolactate synthase, 74.5 6.8 0.00023 37.9 7.3 66 537-605 30-97 (193)
54 3p01_A Two-component response 74.1 1.3 4.6E-05 40.4 2.2 70 167-238 94-171 (184)
55 1mc0_A 3',5'-cyclic nucleotide 73.2 2.5 8.5E-05 42.8 4.1 76 162-239 244-330 (368)
56 1mc0_A 3',5'-cyclic nucleotide 70.7 1.2 4E-05 45.3 0.9 74 162-238 74-158 (368)
57 1y7p_A Hypothetical protein AF 68.5 11 0.00039 37.1 7.4 64 536-603 4-71 (223)
58 3o5y_A Sensor protein; GAF dom 68.5 3.5 0.00012 38.0 3.6 76 163-240 54-137 (165)
59 3ibj_A CGMP-dependent 3',5'-cy 65.7 3 0.0001 47.1 3.1 70 162-235 75-155 (691)
60 1ykd_A Adenylate cyclase; GAF 63.8 1.6 5.6E-05 44.9 0.4 61 163-223 75-143 (398)
61 2k2n_A Sensor protein, SYB-CPH 63.2 8.9 0.0003 34.5 5.3 56 168-224 78-142 (172)
62 2lb5_A Sensor histidine kinase 60.6 9.6 0.00033 35.2 5.1 73 167-240 107-191 (208)
63 3bjc_A CGMP-specific 3',5'-cyc 58.8 2 6.9E-05 50.2 0.0 77 162-240 224-313 (878)
64 3bjc_A CGMP-specific 3',5'-cyc 53.6 2.7 9.4E-05 49.1 0.0 61 162-224 406-477 (878)
65 2wt7_A Proto-oncogene protein 52.0 33 0.0011 26.9 6.1 43 449-504 1-43 (63)
66 3he4_B Synzip5; heterodimeric 45.1 26 0.0009 25.1 3.9 26 479-504 5-30 (46)
67 2f06_A Conserved hypothetical 40.0 1.2E+02 0.0043 26.5 8.9 56 539-601 75-130 (144)
68 2l5g_A GPS2 protein, G protein 36.3 57 0.0019 23.3 4.5 31 473-503 4-34 (38)
69 2oqq_A Transcription factor HY 35.3 29 0.00098 25.4 2.9 21 484-504 3-23 (42)
70 2f06_A Conserved hypothetical 34.0 1.9E+02 0.0065 25.3 9.1 57 538-601 8-64 (144)
71 2re1_A Aspartokinase, alpha an 32.1 1E+02 0.0035 28.1 7.1 72 530-606 19-92 (167)
72 3ld7_A LIN0431 protein; DUF131 31.0 23 0.00079 30.6 2.2 49 162-213 33-82 (101)
73 2dtj_A Aspartokinase; protein- 30.7 1.8E+02 0.0061 26.8 8.6 71 530-605 9-83 (178)
74 2dt9_A Aspartokinase; protein- 29.5 1.3E+02 0.0045 27.3 7.4 55 530-584 10-68 (167)
75 1dh3_A Transcription factor CR 28.8 44 0.0015 25.6 3.2 21 484-504 22-42 (55)
76 2kpp_A LIN0431 protein; soluti 28.3 18 0.00062 32.0 1.1 40 171-213 42-82 (114)
77 2er8_A Regulatory protein Leu3 27.9 38 0.0013 26.5 2.9 21 484-504 49-69 (72)
78 4esn_A Hypothetical protein; p 27.4 28 0.00095 30.3 2.1 47 171-220 45-91 (104)
79 1zme_C Proline utilization tra 25.0 50 0.0017 25.5 3.1 21 484-504 44-64 (70)
80 3s1t_A Aspartokinase; ACT doma 24.1 2.7E+02 0.0092 25.8 8.6 55 530-584 10-68 (181)
81 2qmx_A Prephenate dehydratase; 23.5 2.2E+02 0.0074 28.8 8.3 67 536-604 200-267 (283)
82 2rrl_A FLIK, flagellar HOOK-le 23.0 2.2E+02 0.0075 26.7 7.6 47 526-572 101-153 (169)
83 4go7_X Aspartokinase; transfer 22.7 2.4E+02 0.0083 26.9 8.0 71 530-605 29-103 (200)
84 1pd7_B MAD1; PAH2, SIN3, eukar 22.6 90 0.0031 20.5 3.3 20 473-492 2-21 (26)
85 1gd2_E Transcription factor PA 22.2 65 0.0022 26.0 3.2 21 483-503 28-48 (70)
86 1kd8_B GABH BLL, GCN4 acid bas 20.4 75 0.0026 22.4 2.7 19 486-504 3-21 (36)
87 3ab4_A Aspartokinase; aspartat 20.4 4.2E+02 0.015 27.7 10.2 54 530-583 258-315 (421)
88 2jee_A YIIU; FTSZ, septum, coi 20.3 1E+02 0.0035 25.7 4.1 26 479-504 15-40 (81)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.54 E-value=5.4e-15 Score=125.66 Aligned_cols=63 Identities=27% Similarity=0.415 Sum_probs=60.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI-SKMDKASLLGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
+.+|+.+||+||++||++|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+.+.|.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999986 8999999999999999999999999999888775
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.44 E-value=7.8e-14 Score=118.65 Aligned_cols=63 Identities=29% Similarity=0.481 Sum_probs=58.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPN--ISKMDKASLLGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~--~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
+.+|+.+||+||++||+.|..|+++||. ..|++|++||.+||+||+.|++++++|+.+++.|.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999997 58999999999999999999999999988877664
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=1.1e-13 Score=117.08 Aligned_cols=64 Identities=28% Similarity=0.517 Sum_probs=60.2
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVPNI--SKMDKASLLGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~--~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
.+.+|+.+||+||.+||..|..|+++||.. .|++|++||..||+||+.|++++++|+.+++.|.
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999974 6999999999999999999999999999998875
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.40 E-value=2.3e-13 Score=117.12 Aligned_cols=63 Identities=37% Similarity=0.530 Sum_probs=56.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~---~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
+..|+.+||+||++||+.|..||++||.. .|++|++||.+||+||++|+.+.+.+..+++.+.
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999974 6999999999999999999999988877665543
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=114.24 Aligned_cols=57 Identities=23% Similarity=0.455 Sum_probs=52.7
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVPN-ISKMDKASLLGDAIAYINELQAKLKVME 497 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP~-~~K~dKasIL~~AI~YIk~Lq~~v~~Le 497 (613)
.+.+|+.+||+||++||+.|..|++|||. ..|+||++||.+||+||++||+++.-|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 46899999999999999999999999996 5699999999999999999999987664
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=1.2e-13 Score=112.18 Aligned_cols=53 Identities=34% Similarity=0.540 Sum_probs=49.0
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVPNIS------KMDKASLLGDAIAYINELQAKL 493 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~~------K~dKasIL~~AI~YIk~Lq~~v 493 (613)
.+.+|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++||++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999754 7899999999999999999864
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.38 E-value=3.9e-13 Score=121.69 Aligned_cols=61 Identities=26% Similarity=0.435 Sum_probs=52.3
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVPNIS----KMDKASLLGDAIAYINELQAKLKVMEAERE 501 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~~----K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~ 501 (613)
.+.+|+.+||+||++||++|..|++|||.+. |++|++||.+||+||++||++++.|+.+..
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999754 678999999999999999999999987543
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.36 E-value=1.3e-13 Score=111.53 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=47.7
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI-------SKMDKASLLGDAIAYINELQAKL 493 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~-------~K~dKasIL~~AI~YIk~Lq~~v 493 (613)
+.+|+.+||+||++||..|..|++|||+. .|.+||+||+.||+||++||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999953 56679999999999999999765
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.35 E-value=1.2e-12 Score=110.75 Aligned_cols=63 Identities=27% Similarity=0.298 Sum_probs=57.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI---SKMDKASLLGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~---~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
+..|+..||+||..||..|..||++||.. .|.+|++||.+|++||++|+++.+.|..+++.|.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999964 6888999999999999999999999998887764
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.28 E-value=8e-13 Score=109.82 Aligned_cols=50 Identities=30% Similarity=0.478 Sum_probs=47.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPNI----SKMDKASLLGDAIAYINELQA 491 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~~----~K~dKasIL~~AI~YIk~Lq~ 491 (613)
+.+|..+||+||++||+.|.+|++|||.+ .|+||++||..||+||+.|+.
T Consensus 10 R~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 10 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999964 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.23 E-value=3.5e-12 Score=106.77 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=48.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHhhcCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 048817 440 EEPLNHVEAERQRREKLNQRFYALRAVVPN---ISKM-DKASLLGDAIAYINELQAKLKVME 497 (613)
Q Consensus 440 ~~~~~H~~~ER~RR~kln~~f~~LrslvP~---~~K~-dKasIL~~AI~YIk~Lq~~v~~Le 497 (613)
+.+..|+..||+||+.||+.|..||.+||. ..|. .|++||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999995 4455 688999999999999999999876
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.93 E-value=7.3e-10 Score=88.64 Aligned_cols=53 Identities=34% Similarity=0.382 Sum_probs=48.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 048817 442 PLNHVEAERQRREKLNQRFYALRAVVPN---ISKMDKASLLGDAIAYINELQAKLK 494 (613)
Q Consensus 442 ~~~H~~~ER~RR~kln~~f~~LrslvP~---~~K~dKasIL~~AI~YIk~Lq~~v~ 494 (613)
+..|+..||+|+..||+.|..||.+||. ..|..|..+|..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999996 4588999999999999999998753
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.91 E-value=6.1e-10 Score=91.23 Aligned_cols=53 Identities=32% Similarity=0.440 Sum_probs=48.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVPN--ISKMDKASLLGDAIAYINELQAKL 493 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP~--~~K~dKasIL~~AI~YIk~Lq~~v 493 (613)
.+..|+..||+|+..||+.|..||.+||. ..|.+|+.||..||+||..|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 468999999999999999999765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.74 E-value=5.9e-09 Score=110.12 Aligned_cols=52 Identities=25% Similarity=0.521 Sum_probs=43.0
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVP-NISKMDKASLLGDAIAYINELQAK 492 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP-~~~K~dKasIL~~AI~YIk~Lq~~ 492 (613)
++.+|+.+||+||++||..|..|++||| +..|+||++||..||+||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999 678999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.53 E-value=3e-08 Score=105.89 Aligned_cols=52 Identities=29% Similarity=0.436 Sum_probs=48.5
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhcCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 048817 441 EPLNHVEAERQRREKLNQRFYALRAVVP----NISKMDKASLLGDAIAYINELQAK 492 (613)
Q Consensus 441 ~~~~H~~~ER~RR~kln~~f~~LrslvP----~~~K~dKasIL~~AI~YIk~Lq~~ 492 (613)
.+.+|+.+||+||++||..|..|++||| ...|+||++||..||+|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3589999999999999999999999999 678999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.48 E-value=4.7e-08 Score=79.46 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHHHHH
Q 048817 448 AERQRREKLNQRFYALRAVVPN---ISKMDKASLLGDAIAYINELQA 491 (613)
Q Consensus 448 ~ER~RR~kln~~f~~LrslvP~---~~K~dKasIL~~AI~YIk~Lq~ 491 (613)
.||+|+..||+.|..||.+||. ..|..|..+|..||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4788999999999999999996 4688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.09 E-value=5.2e-06 Score=70.06 Aligned_cols=49 Identities=22% Similarity=0.423 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048817 453 REKLNQRFYALRAVVPNI----SKMDKASLLGDAIAYINELQAKLKVMEAERE 501 (613)
Q Consensus 453 R~kln~~f~~LrslvP~~----~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~ 501 (613)
|..||+++..|..|||.. .|..|.+||..|++||++||+.++.+..+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 5788999999999999999998777765443
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.68 E-value=5.6e-05 Score=65.66 Aligned_cols=48 Identities=27% Similarity=0.388 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CCCCChhhHHHHHHHHHHHHHHHHHH
Q 048817 448 AERQRREKLNQRFYALRAVVPN---ISKMDKASLLGDAIAYINELQAKLKV 495 (613)
Q Consensus 448 ~ER~RR~kln~~f~~LrslvP~---~~K~dKasIL~~AI~YIk~Lq~~v~~ 495 (613)
.||.|-..||+-|..||.+||. ..|..|..+|.-||+||..|++-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888999999999999996 46889999999999999999987653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.45 E-value=0.028 Score=46.78 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=57.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
.+.|.|.|++++|.+.+|..+|.+.|..|.+.+.....+.+...+.+.+.+ ....++|.++|.++...
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--KQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--CCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--CCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999888778777788887754 34567899999887765
No 20
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=94.33 E-value=0.019 Score=54.58 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=56.6
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEcCC------ceEeeccccc---ccCCHHH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDA------GVVELGSVRS---VPESLEL 232 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~~~------GVvELGSt~~---I~E~~~l 232 (613)
..|+.|+|+.|+|+.+|+++.+.+...-+. |.+...+++.++|||+.. |||++.+.+. -.+|..+
T Consensus 92 ~~i~~g~Gi~G~aa~~g~~v~v~Dv~~dp~------~~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~ 165 (180)
T 1f5m_A 92 QMIQFGKGVCGTAASTKETQIVPDVNKYPG------HIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEF 165 (180)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGSTT------CCCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHH
T ss_pred eeecCCCcchhhhhhcCCEEEeCCcccCcc------ccccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHH
Confidence 468889999999999999999988764332 224567899999999965 9999998754 2346677
Q ss_pred HHHHHHHhc
Q 048817 233 VHSIRATFS 241 (613)
Q Consensus 233 v~~ik~~F~ 241 (613)
++.+-....
T Consensus 166 L~~la~~~a 174 (180)
T 1f5m_A 166 LEKLAKLIN 174 (180)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665543
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.32 E-value=0.16 Score=48.25 Aligned_cols=67 Identities=7% Similarity=0.094 Sum_probs=56.1
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
.+.|.|.|++++|++++|..+|.++|+.|+.+++....+.++..+.+.... ...++|.++|.++..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999999988888888888886532 3567888888876653
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.44 E-value=0.27 Score=47.17 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=54.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN------DMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~------~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
...|.|.|++++|++.+|-..|-++|+.|..+...+.. +.++..+.+... .... ++|.++|..+..++
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHHHHc
Confidence 46799999999999999999999999999999987665 566666666554 2345 88999998887663
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.28 E-value=0.29 Score=46.97 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=53.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCc-cccHHHHHHHHHHhh
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSE-QLTKEKLIAAFSCES 603 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~-~~t~e~L~~aL~~~~ 603 (613)
.+.|.|.|++++|++++|..+|.++|+.|+.+++....+.++..+.+...... ....++|.++|..+.
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998888888777777654220 012567777776554
No 24
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=93.25 E-value=0.22 Score=40.58 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=46.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHh
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCE 602 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~ 602 (613)
.+.|+|.+++++|.+.+|..+|.+.|+.|.+..+...++.....+.+++.+ ....+++.++|.++
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~ 69 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN--TDKLTTLMDKLRKV 69 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS--HHHHHHHHHHHTTC
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC--HHHHHHHHHHHhcC
Confidence 457889999999999999999999999999998877666444455555532 12223555555443
No 25
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=93.18 E-value=0.095 Score=46.49 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=50.5
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHHH
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELVH 234 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv~ 234 (613)
.++.|.|+.|+++.+++++++.+....+. +.........|++.++|||+ .-|||.+++.+.- .++..+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~~~~~~f~~~d~~~l~ 149 (171)
T 3trc_A 72 RLKFGEGLIGLVGEREEPINLADAPLHPA--YKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQLESHHFAEEEEAFCV 149 (171)
T ss_dssp EEETTCHHHHHHHHHTSCEEESCGGGSTT--CCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEESSSCCCCHHHHHHHH
T ss_pred eecCCCChhhHHHhcCCeEEeCCCCCCCc--ccccccCCcccccEEEEEeEEECCEEEEEEEEeecCCCCCCHHHHHHHH
Confidence 56778899999999999999976654221 11111224589999999998 4589999987542 23455555
Q ss_pred HHHH
Q 048817 235 SIRA 238 (613)
Q Consensus 235 ~ik~ 238 (613)
.+-.
T Consensus 150 ~la~ 153 (171)
T 3trc_A 150 TLAI 153 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 26
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=92.81 E-value=0.44 Score=45.24 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=54.6
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC--------CeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN--------DMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~--------~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
...|.|.|++++|.+.+|.+.|.+.++.|..+...+.. +.++..+.+... .....++|.++|..+..++
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999999999998876543 455556666553 3556788999998877764
No 27
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=92.57 E-value=1.1 Score=39.94 Aligned_cols=75 Identities=8% Similarity=-0.049 Sum_probs=49.5
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCC-ccch-hh--hhhhhcCccEEEEEEc-----CCceEeeccccccc---CCH
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSS-DYCV-RS--FLAKSARIQTIVLIST-----DAGVVELGSVRSVP---ESL 230 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~-~~~~-R~--~~A~saGIqTivciP~-----~~GVvELGSt~~I~---E~~ 230 (613)
.++.+.|+.|+++.++.++.+ +....+. ..+. +. ......|++.++|||. .-|||.+++...-. ++.
T Consensus 72 ~~~~~~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~~~~~~f~~~d~ 150 (177)
T 3k2n_A 72 TRSIAGTWLEGHLDDRTVTVA-SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDK 150 (177)
T ss_dssp EEECTTSGGGGGTTCCSCEEE-ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHH
T ss_pred cCCccccHHHHHhccCCceEe-chhhcccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEECCCCCCCHHHH
Confidence 456678999999999999998 5443222 1222 11 1346789999999998 45899998865422 344
Q ss_pred HHHHHHHH
Q 048817 231 ELVHSIRA 238 (613)
Q Consensus 231 ~lv~~ik~ 238 (613)
.+++.+-.
T Consensus 151 ~ll~~lA~ 158 (177)
T 3k2n_A 151 SLLSGVSS 158 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
No 28
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=92.44 E-value=0.027 Score=51.21 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=54.0
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhh-hhhhhcCccEEEEEEc-----CCceEeecccccc----cCCHH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRS-FLAKSARIQTIVLIST-----DAGVVELGSVRSV----PESLE 231 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~-~~A~saGIqTivciP~-----~~GVvELGSt~~I----~E~~~ 231 (613)
..|+.|.|+.|+++.+|+++++.+....+. |.+. -.....+++.++|||+ .-|||.+++...- .+|..
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~l~~~~~~~~f~~~d~~ 161 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPR--FNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDEN 161 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTT--CCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHH
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCcc--cChhhccccCCccceEEEEEeccCCeEEEEEEEEeCCCCCCCCHHHHH
Confidence 467889999999999999999987654322 2221 1223578999999998 4589999987644 34666
Q ss_pred HHHHHHHH
Q 048817 232 LVHSIRAT 239 (613)
Q Consensus 232 lv~~ik~~ 239 (613)
+++.+-..
T Consensus 162 ll~~la~~ 169 (189)
T 2e4s_A 162 NFKMFAVF 169 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 29
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=92.30 E-value=0.11 Score=50.24 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=57.2
Q ss_pred eeecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEcC-----CceEeeccccc---ccCCHHH
Q 048817 161 YFSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTD-----AGVVELGSVRS---VPESLEL 232 (613)
Q Consensus 161 ~~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~~-----~GVvELGSt~~---I~E~~~l 232 (613)
...|+.|+|+.|+|+.+|+++.+.+...-+. +++...+.+.++|||.. -|||++.|.+. -.+|..+
T Consensus 86 ~~~i~~GeGi~G~aa~tg~~i~V~Dv~~~p~------~~~~~~~~~S~l~VPI~~~g~viGVL~i~s~~~~~F~e~d~~~ 159 (195)
T 1vhm_A 86 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDG------HIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQG 159 (195)
T ss_dssp CSEEETTSHHHHHHHHHTSCEEESCTTTCTT------CCCSCCCCSEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHH
T ss_pred ceEecCCCChHHHHHhcCCEEEECCcccCcc------hhhcCCCccEEEEEeEeECCEEEEEEEecCCCCCCCCHHHHHH
Confidence 3468899999999999999999998875322 23334578999999982 38999999754 2347778
Q ss_pred HHHHHHHhcc
Q 048817 233 VHSIRATFSS 242 (613)
Q Consensus 233 v~~ik~~F~~ 242 (613)
++.+-.....
T Consensus 160 L~~lA~~ia~ 169 (195)
T 1vhm_A 160 LRQLVAQLEK 169 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777766543
No 30
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=92.01 E-value=0.14 Score=44.85 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=46.5
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHHH
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELVH 234 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv~ 234 (613)
.++.+.|+.|+++.+++++++.+....+. +.........|++.++|||+ .-|||.+++.+.- .++..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~f~~~~~~~l~ 151 (171)
T 3ci6_A 74 SLQLSEGLVGLVGQREEIVNLENASKHER--FAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKQPQDFSEAAESFLV 151 (171)
T ss_dssp EEETTSHHHHHHHHHTSCEEESSGGGSTT--C---------CCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred eeeccCCeehhhhccCceEEecCCCcCcc--hhccccccccccceEEEEeEEECCEEEEEEEEecCCCCCCCHHHHHHHH
Confidence 45667889999999999999986643222 11111125678999999998 3489999988542 23445555
Q ss_pred HHHH
Q 048817 235 SIRA 238 (613)
Q Consensus 235 ~ik~ 238 (613)
.+-.
T Consensus 152 ~la~ 155 (171)
T 3ci6_A 152 TLCA 155 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 31
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=91.44 E-value=0.064 Score=49.93 Aligned_cols=76 Identities=16% Similarity=0.024 Sum_probs=52.6
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhh-hhhhcCccEEEEEEc-----CCceEeecccccc----cCCHH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSF-LAKSARIQTIVLIST-----DAGVVELGSVRSV----PESLE 231 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~-~A~saGIqTivciP~-----~~GVvELGSt~~I----~E~~~ 231 (613)
..++.|+|+.|+++.+|+++.+.+...-+ .|.+.. ...-..++.++|||. .-|||+|.+...- .+|..
T Consensus 81 ~~~~~~~gi~g~v~~tg~~v~i~d~~~d~--~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n~~~~~~Ft~~d~~ 158 (180)
T 3dba_A 81 TVFPLDIGIAGWVAHTKKFFNIPDVKKNN--HFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEE 158 (180)
T ss_dssp CEECTTSSHHHHHHHHTCCEEESCGGGCT--TCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEESSSSSCCHHHHH
T ss_pred eeeeCCCCHHHHHHHhCCEEEecCCCCCc--ccChhhccccCccccEEEEEEeccCCEEEEEEEEEeCCCCCCCCHHHHH
Confidence 36788999999999999999998875432 232221 112345799999998 3389999876532 34666
Q ss_pred HHHHHHHH
Q 048817 232 LVHSIRAT 239 (613)
Q Consensus 232 lv~~ik~~ 239 (613)
+++.+-+.
T Consensus 159 lL~~lA~~ 166 (180)
T 3dba_A 159 VFKKYLNF 166 (180)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 32
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=90.80 E-value=0.13 Score=46.80 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=41.2
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEcC-----CceEeeccc
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTD-----AGVVELGSV 223 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~~-----~GVvELGSt 223 (613)
..|+.|+|+.|+++.+|+++++.+...-+ |++.++|||.. -|||.+.+.
T Consensus 54 ~~~~~~~g~~g~v~~~g~~v~v~d~~~d~-------------~~~s~l~vPL~~~~~~~GvL~l~~~ 107 (149)
T 2vjw_A 54 SAIPVQDNAIGQAFRDRAPRRLDVLDGPG-------------LGGPALVLPLRATDTVAGVLVAVQG 107 (149)
T ss_dssp CEEESSSSHHHHHHHHCCCEEESCCCTTS-------------CEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cccCCCCCHHHHHhhcCceEEecCcccCC-------------CCCeEEEEEEccCCeEEEEEEEeeC
Confidence 46788999999999999999998875322 78999999983 489999876
No 33
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=90.73 E-value=0.14 Score=45.77 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=49.4
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHHH
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELVH 234 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv~ 234 (613)
.++.|.|+.|+++.+|+++++.+....+. +.........|++.++|||+ .-|||.+++.+.- .++..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~~l~ 154 (181)
T 3e0y_A 77 RIKIGDGITGSVARDGQYISLSRASQDPR--YRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNTTSIRSFHEDEIYFVS 154 (181)
T ss_dssp EEETTTSSHHHHHHHCCCEEEEEECCCCC--C---------CEEEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccCCCCeeeehhhcCCeEEecCcccCcc--ccccccccccCcceEEEEEEEeCCeEEEEEEEeeCCCCCCCHHHHHHHH
Confidence 56778999999999999999987654322 22222234679999999998 3479999988632 23555555
Q ss_pred HHHHHh
Q 048817 235 SIRATF 240 (613)
Q Consensus 235 ~ik~~F 240 (613)
.+-..+
T Consensus 155 ~la~~~ 160 (181)
T 3e0y_A 155 IIANLI 160 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 34
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=90.48 E-value=0.094 Score=49.42 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=55.5
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELV 233 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv 233 (613)
..|+.|+|+.|+|+.+|+++.+.+.+.-+. +++...+++..+|||. .-|||++.|.+.- .+|..++
T Consensus 76 ~~i~~geGi~G~v~~~g~~~~v~Dv~~~p~------~~~~~~~~~S~i~vPi~~~g~viGVL~i~s~~~~~F~~~d~~~L 149 (167)
T 3mmh_A 76 TRIPFGRGVCGQAWAKGGTVVVGDVDAHPD------HIACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYL 149 (167)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGSTT------CCCSSTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred eEeccCCChHHHHHhCCcEEEECCcccCcc------hhhcCccCCeEEEEEeccCCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 378899999999999999999998875332 2233468899999998 3589999986432 3567777
Q ss_pred HHHHHHhc
Q 048817 234 HSIRATFS 241 (613)
Q Consensus 234 ~~ik~~F~ 241 (613)
+.+-....
T Consensus 150 ~~lA~~la 157 (167)
T 3mmh_A 150 GELAKILE 157 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666543
No 35
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=90.28 E-value=1.1 Score=40.36 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=51.2
Q ss_pred CCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc------CCceEeecc-ccc---ccCCHHHHHH
Q 048817 166 RGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST------DAGVVELGS-VRS---VPESLELVHS 235 (613)
Q Consensus 166 ~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~------~~GVvELGS-t~~---I~E~~~lv~~ 235 (613)
.|+|+.|+++.+|+++.+.+....+. ...+.. +...|++.++|||. .-|||.+.+ ... =.++..+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~-~~~~g~~s~~~vPl~~~~~~~~GvL~l~~~~~~~~f~~~d~~lL~~ 147 (181)
T 2qyb_A 70 EIETYIGEAFLSNRLQFVNDTQYMTK-PLTREL-MQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLES 147 (181)
T ss_dssp CTTSHHHHHHHHTSCEEESCGGGCSC-HHHHHH-HHHTTCCEEEEEEECCTTSCCCEEEEEEESSCSSCCCHHHHHHHHH
T ss_pred CCCCchhhhhhcCCCEEecChhcCCc-hhhHHH-HHhcCcceEEEEEEEeCCCeEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 37799999999999999977654332 112222 34579999999998 348999998 443 2345666666
Q ss_pred HHHHhc
Q 048817 236 IRATFS 241 (613)
Q Consensus 236 ik~~F~ 241 (613)
+-..+.
T Consensus 148 la~~~a 153 (181)
T 2qyb_A 148 LAGQLA 153 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 36
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=89.08 E-value=0.38 Score=42.40 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=50.8
Q ss_pred CCCccceeeeCCCeEEEeCCCCCCCccchhh--hhhhhcCccEEEEEEc-----CCceEeeccccc----ccCCHHHHHH
Q 048817 167 GEGGPGKCFASGKHVWLLDALKLSSDYCVRS--FLAKSARIQTIVLIST-----DAGVVELGSVRS----VPESLELVHS 235 (613)
Q Consensus 167 G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~--~~A~saGIqTivciP~-----~~GVvELGSt~~----I~E~~~lv~~ 235 (613)
|.|+.|+++.+++++++.+....+.....+. ......|++.++|+|. .-|||.+++... -.+|.++++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~~~~~~~f~~~d~~~l~~ 151 (169)
T 3oov_A 72 RGGVITKCFTDRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIKL 151 (169)
T ss_dssp GGHHHHHHHHHTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHHH
T ss_pred ccchHHHHHhcCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEccccCCCCCHHHHHHHHH
Confidence 7899999999999999987665433222221 2345689999999998 348999998643 2345666665
Q ss_pred HHHH
Q 048817 236 IRAT 239 (613)
Q Consensus 236 ik~~ 239 (613)
+-..
T Consensus 152 ~a~~ 155 (169)
T 3oov_A 152 FADQ 155 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 37
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=88.94 E-value=1.7 Score=44.40 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=55.9
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLST--GNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~--~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
.+.|.|.|+++.|...+|-..|-++|+.+..++... ..+.++..+.+.... ....++|.++|..+.+++
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~la~~l 78 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAERSEAF 78 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHHHHGGG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999999998763 456666555555432 577889999999887764
No 38
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=88.88 E-value=0.57 Score=40.99 Aligned_cols=71 Identities=7% Similarity=-0.088 Sum_probs=44.6
Q ss_pred CCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeeccccccc---CCHHHHHHHH
Q 048817 166 RGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSVP---ESLELVHSIR 237 (613)
Q Consensus 166 ~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I~---E~~~lv~~ik 237 (613)
.|.|..|+++.+|+++++.+....+.. ......+...||+.++|||. .-|||.+.+...-. ++..+++.+-
T Consensus 52 ~~~~~~~~~~~~~~~~~i~d~~~~~~~-~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a 130 (151)
T 3hcy_A 52 DGHSPWITGANEPEPIFVENVDDAEFS-RELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTIA 130 (151)
T ss_dssp CBCCSCC---CCCCCEEESCGGGSCCC-HHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred cCCCchhhhhhcCCcEEEeChhhCccc-chhHHHHHhcCchheEEeceEECCEEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 467889999999999999877543321 11122356789999999998 34788887764322 3444444443
No 39
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=88.02 E-value=0.31 Score=42.07 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=50.3
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeeccccc----ccCCHHHH
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRS----VPESLELV 233 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~----I~E~~~lv 233 (613)
.++.+.|+.|+++.+++++++.+....... . .......|++.++|||+ .-|||.+++... -.++..++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~-~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~~~~~l 132 (153)
T 2w3g_A 56 HLPKGLGVIGLLIEDPKPLRLDDVSAHPAS--I-GFPPYHPPMRTFLGVPVRVRDESFGTLYLTDKTNGQPFSDDDEVLV 132 (153)
T ss_dssp SCCCSCTHHHHHHHSCSCEEESSGGGSTTC--C-CCCTTCCCCCCEEEEEEEETTEEEEEEEEEEETTSCCCCHHHHHHH
T ss_pred cCCCCCCHHHHHHhcCCcEEecCcccCchh--c-CCCCcCCCCCeEEEeeEEECCEEEEEEEEeeCCCCCCCCHHHHHHH
Confidence 456678999999999999999876432211 1 11114578999999998 348999998765 23355555
Q ss_pred HHHHHH
Q 048817 234 HSIRAT 239 (613)
Q Consensus 234 ~~ik~~ 239 (613)
+.+-..
T Consensus 133 ~~la~~ 138 (153)
T 2w3g_A 133 QALAAA 138 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 40
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=87.51 E-value=2.8 Score=42.87 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=56.5
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLS--TGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs--~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
..+.|.|.|+++.|...+|-..|-++|+.+..++.. ...+.++..+.+.... .....++|.++|..+.+++
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~~L~~~f~~la~~~ 77 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAA-KVIPLASLRTGFGVIAAKF 77 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESS-CCCCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCC-CCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999864 3456666666666533 2467789999998887754
No 41
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=87.35 E-value=0.25 Score=46.35 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=55.1
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELV 233 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv 233 (613)
..++.|+|+.|+|+.+|+++-+.+.+.-+.+ ++...+.+..+|||. .-|||.+.|.+.- .+|..++
T Consensus 75 ~ri~~GeGv~G~aa~~~~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L 148 (160)
T 3ksh_A 75 VHIPIGKGVCGTAVSERRTQVVADVHQFKGH------IACDANSKSEIVVPIFKDDKIIGVLDIDAPITDRFDDNDKEHL 148 (160)
T ss_dssp SEEETTSHHHHHHHHHTSCEEESCGGGSTTC------CGGGTTCSEEEEEEEEETTEEEEEEEEEESSSSCCCHHHHHHH
T ss_pred EEeeCCCCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 4789999999999999999999988764332 233456789999998 3489999986432 3567777
Q ss_pred HHHHHHh
Q 048817 234 HSIRATF 240 (613)
Q Consensus 234 ~~ik~~F 240 (613)
+.+-..+
T Consensus 149 ~~lA~~l 155 (160)
T 3ksh_A 149 EAIVKII 155 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 42
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=87.16 E-value=0.31 Score=46.31 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=59.0
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELV 233 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv 233 (613)
..++.|+|+.|+|+.+|+++-+.+.+.-+.. ++...+.+..+|||. .-|||.+.|.+.- .+|..++
T Consensus 76 ~ri~~GeGv~G~va~tg~~i~V~Dv~~~p~~------i~~~~~~~Sei~VPI~~~g~viGVL~i~s~~~~~F~e~D~~~L 149 (171)
T 3rfb_A 76 IRIALGKGVCGEAAHFQETVIVGDVTTYLNY------ISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYL 149 (171)
T ss_dssp CEEETTSHHHHHHHHTTSCEEESCTTSCSSC------CCSCTTCCEEEEEEEEETTEEEEEEEEEESSTTCCCHHHHHHH
T ss_pred eEeeCCcCHHHHHHhhCCEEEECCcccCccc------cccCcccCceEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHH
Confidence 4789999999999999999999998764432 223356789999998 3489999985432 4688888
Q ss_pred HHHHHHhccC
Q 048817 234 HSIRATFSSN 243 (613)
Q Consensus 234 ~~ik~~F~~~ 243 (613)
+.+-......
T Consensus 150 ~~lA~~la~~ 159 (171)
T 3rfb_A 150 EQFVAILLEK 159 (171)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 43
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=86.47 E-value=1.6 Score=46.09 Aligned_cols=71 Identities=4% Similarity=0.020 Sum_probs=58.0
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
..+.|.|.|++++|+...|...|-++|..|+.++-....+.++..+.+.+... ..+.++|.++|..+..++
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~ 81 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-VADGPALRHDVEAAIRKV 81 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-HHTSHHHHHHHHHHHHHT
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-cCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999998888888877777776332 123478888888776643
No 44
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=86.41 E-value=3.3 Score=42.73 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTG--NDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~--~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
.+.|.|.|+++.|...+|-..|-+.|+.|+.++.... .+.++..+.+.... .....++|.++|..+.+++
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~-~~~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADT-LPFDLDGFREAFTPIAEEF 93 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGG-SSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCC-CCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999987754 56665555554422 2467889999998877654
No 45
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=85.88 E-value=3.2 Score=42.58 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=54.9
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeCCCc-cccHHHHHHHHHHhhhcc
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLST--GNDMVFHTFVIKSQGSE-QLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~--~~~~~~~t~~vk~~~~~-~~t~e~L~~aL~~~~~~~ 606 (613)
..+.|.+.|+++.|...+|-..|-++|+.+..++... ..+.++..+.+...... ....++|.++|..+.+++
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~ 83 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERF 83 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999998763 45666655555543112 466789999998877654
No 46
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=83.64 E-value=1.9 Score=40.67 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=47.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
.|.|..++++|.|.+|...|.+.|+.+.+.++....+..+..+++.+. +..-.-++|...|.++.+
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GDEKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-ccHHHHHHHHHHHcCCCC
Confidence 577888999999999999999999999999887655433444444443 333444577777776654
No 47
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=81.36 E-value=0.67 Score=41.55 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=52.1
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeeccccc----ccCCHHH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRS----VPESLEL 232 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~----I~E~~~l 232 (613)
..|+.|.|+.|+++.+|+++++.+....+.. ..........+++.++|+|. .-|||.+..... =.+|..|
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~-~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~~~~~~~f~~~d~~l 162 (189)
T 2zmf_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPRF-NREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENN 162 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTTC-CTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEEETTSSSCCHHHHHH
T ss_pred cccCCCccHHHHHHHhCCeEEEecccccccc-cccchhhcccccceEEEeeecccCceeeEEEEEEcCCCCCcCHHHHHH
Confidence 4678899999999999999999877643332 22333345678999999998 336777754332 1345566
Q ss_pred HHHHHH
Q 048817 233 VHSIRA 238 (613)
Q Consensus 233 v~~ik~ 238 (613)
++.+-.
T Consensus 163 l~~lA~ 168 (189)
T 2zmf_A 163 FKMFAV 168 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 48
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=81.22 E-value=4 Score=36.96 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=43.6
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
.|+|.|.+|.|++.+|+++|.+.++++..+++... +. +.+++.....-.-..|...|.++..
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~~~~~~~~~~L~~~l~~i~~ 63 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFAELEFESFSSLMAEIRRIAG 63 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEECCCCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEEeCCHHHHHHHHHHHHcCCC
Confidence 48899999999999999999999999999988655 33 3344432222223355666665543
No 49
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=79.96 E-value=0.75 Score=52.08 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=51.4
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhh-hhcCccEEEEEEc--C-C---ceEeecccccc----cCCH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLA-KSARIQTIVLIST--D-A---GVVELGSVRSV----PESL 230 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A-~saGIqTivciP~--~-~---GVvELGSt~~I----~E~~ 230 (613)
..++.|.|+.|+++.+|+++.+.+....+. +.+.... ...+++.++|+|. . + |||.+.+...- .+|.
T Consensus 244 ~~~~~~~gi~g~v~~~g~~v~i~d~~~d~~--~~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~ 321 (691)
T 3ibj_A 244 IRIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (691)
T ss_dssp EEEETTSHHHHHHHHHCSCEEESCSTTSTT--C------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTT
T ss_pred eeccCCCCHHHHHHHhCCEEEecCcccCcc--ccchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHH
Confidence 467889999999999999999987765332 2222111 1256999999998 3 2 89999876533 4577
Q ss_pred HHHHHHHHH
Q 048817 231 ELVHSIRAT 239 (613)
Q Consensus 231 ~lv~~ik~~ 239 (613)
.+++.+-..
T Consensus 322 ~ll~~lA~~ 330 (691)
T 3ibj_A 322 DLATAFSIY 330 (691)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665443
No 50
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=79.53 E-value=6.3 Score=40.26 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=51.6
Q ss_pred CeEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 535 DEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLST--GNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 535 ~ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~--~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
..+.|.|.|+++.|...+|-..|-++|+.++.++... ..+.++..+.+.... ...++|.++|..+.+++
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~L~~~f~~la~~~ 76 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV---AGVNDFNSAFGKVVEKY 76 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC------CHHHHHHHHHHGGG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC---CCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999998653 356666555554422 23348888888877754
No 51
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=79.35 E-value=2.3 Score=40.13 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=47.3
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN--DMVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~--~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
.|.|..++++|.|.+|...|.+.|+.+.+.++.... +....+|++. +....-++|...|.++.+
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GPDEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---ECHHHHHHHHHHHHHSTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---ccHHHHHHHHHHhcCCCC
Confidence 577888899999999999999999999999887555 3344455554 233445677777777654
No 52
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=76.87 E-value=1.2 Score=45.85 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=44.5
Q ss_pred eecCCCCCccceeeeCCCeEEEe-CCCCCCCccchhhhhh-hhcCccEEEEEEcCC------ceEeecccc
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLL-DALKLSSDYCVRSFLA-KSARIQTIVLISTDA------GVVELGSVR 224 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~-~~~~~~~~~~~R~~~A-~saGIqTivciP~~~------GVvELGSt~ 224 (613)
..++.|.|+.|+++.+|+++++. +....+.....+.... ...+++.++|||+.. |||.+.+..
T Consensus 261 ~~~~~~~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 261 LRVPIGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK 331 (398)
T ss_dssp EEEETTSHHHHHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC
T ss_pred eeccCCCchhhHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecC
Confidence 46788999999999999999998 6654332222221211 134578899999964 899998876
No 53
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=74.54 E-value=6.8 Score=37.89 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=48.9
Q ss_pred EEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 537 VVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGND--MVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 537 v~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~--~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
-.|.|..++++|.|.+|...|...|+.|.+..+....+ ....+|++.. ....-++|...|.++.+-
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g---~e~~ieqL~kQL~KLidV 97 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG---DDKTIEQIEKQAYKLVEV 97 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE---CTTHHHHHHHHHTTSTTE
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC---CHHHHHHHHHHhcCcCce
Confidence 35677778999999999999999999999998875544 3444555542 245667888888876543
No 54
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=74.15 E-value=1.3 Score=40.36 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=46.4
Q ss_pred CCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHHHHHHH
Q 048817 167 GEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELVHSIRA 238 (613)
Q Consensus 167 G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv~~ik~ 238 (613)
+.|+.|+++.+|+++.+.+....+ ..+. .......|++.++|||. .-|||.+.+...- .+|..|++.+-.
T Consensus 94 ~~~~~~~~~~~~~~~~i~d~~~~~-~~~~-~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~ 171 (184)
T 3p01_A 94 QDPLTNEAIATGQIQVAANIAKDP-KLAS-ISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQPISLREDELTLIHLSAQ 171 (184)
T ss_dssp GCHHHHHHHHHCSCEEESCGGGCH-HHHT-CHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHhhCCeEEEeccccCc-cccc-hhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCCCCCCHHHHHHHHHHHH
Confidence 467888999999999987754322 2222 22334679999999998 3589999655432 235556555543
No 55
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=73.20 E-value=2.5 Score=42.78 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=51.4
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhh-hhcCccEEEEEEc-CC-----ceEeecccccc----cCCH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLA-KSARIQTIVLIST-DA-----GVVELGSVRSV----PESL 230 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A-~saGIqTivciP~-~~-----GVvELGSt~~I----~E~~ 230 (613)
..|+.|.|+.|+++.+|+++++.+....+. |.+.... ....++.++|||+ .. |||.+++...- .+|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~--~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~~~~f~~~d~ 321 (368)
T 1mc0_A 244 IRIPADQGIAGHVATTGQILNIPDAYAHPL--FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDE 321 (368)
T ss_dssp CEECTTSHHHHHHHHHCCCEEESCSTTCTT--CCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEEETTSSSCCHHHH
T ss_pred eeecCCCceeeeehhhCCEEEecCcccCcc--cchhhhhccCCccceEEEEeeECCCCcEEEEEEEEECCCCCCCCHHHH
Confidence 467888999999999999999987764332 2222111 1223599999999 43 79999987643 3456
Q ss_pred HHHHHHHHH
Q 048817 231 ELVHSIRAT 239 (613)
Q Consensus 231 ~lv~~ik~~ 239 (613)
.+++.+-..
T Consensus 322 ~ll~~la~~ 330 (368)
T 1mc0_A 322 DLATAFSIY 330 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 56
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=70.70 E-value=1.2 Score=45.27 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=49.5
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-CC------ceEeeccccc----ccCCH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-DA------GVVELGSVRS----VPESL 230 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-~~------GVvELGSt~~----I~E~~ 230 (613)
..|+.|.|+.|.++.+|+++++.+....+. + ..-.+...+++.++|||+ .. |||.+.+... -.+|.
T Consensus 74 ~~~~~~~g~~g~~~~~~~~~~i~d~~~~~~--~-~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~~~f~~~d~ 150 (368)
T 1mc0_A 74 VSFPLTMGRLGQVVEDKQCIQLKDLTSDDV--Q-QLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGGDFFTDEDE 150 (368)
T ss_dssp EEEESSSSSHHHHHHHCCCEEGGGSCHHHH--H-HHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSCSSCCSHHH
T ss_pred eeeccccCHHHHHHhcCCeEEecccccccc--c-ccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCCCCCCHHHH
Confidence 457889999999999999999987643211 1 111223567899999998 33 7898776543 23455
Q ss_pred HHHHHHHH
Q 048817 231 ELVHSIRA 238 (613)
Q Consensus 231 ~lv~~ik~ 238 (613)
.+++.+-.
T Consensus 151 ~~l~~la~ 158 (368)
T 1mc0_A 151 HVIQHCFH 158 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 57
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=68.51 E-value=11 Score=37.07 Aligned_cols=64 Identities=6% Similarity=-0.051 Sum_probs=45.0
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeC----CeEEEEEEEEeCCCccccHHHHHHHHHHhh
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGN----DMVFHTFVIKSQGSEQLTKEKLIAAFSCES 603 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~----~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~ 603 (613)
.+.|.|.+.+++|+|.+|+.+|.+.+..+.+.+..... + ...++++++.+. .-++|.+.|.++-
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~n-g~A~I~IEV~d~---~Le~LL~kLrkI~ 71 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHE-GKALIYFEIEGG---DFEKILERVKTFD 71 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTT-TEEEEEEEECSS---CHHHHHHHHHTCT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcC-CEEEEEEEECCC---CHHHHHHHHhCCC
Confidence 46788999999999999999999999999999988754 2 223444777543 5557777777653
No 58
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=68.51 E-value=3.5 Score=38.02 Aligned_cols=76 Identities=11% Similarity=0.237 Sum_probs=50.5
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHHH
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELVH 234 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv~ 234 (613)
.++.+.++.|+++.+|+++=+. ....+ ..|.....+...|++.++|+|. .-|||-|++...- .+|..+++
T Consensus 54 ~ip~~~s~~~~v~~~~~~~v~~-~~~~~-~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~~~~~~f~~~d~~~l~ 131 (165)
T 3o5y_A 54 TIPKEQSLYWSALDQRQTIFRS-LTDTQ-DNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGRKQQIDWSLDDLAFLE 131 (165)
T ss_dssp EECSTTCHHHHHHHHTSCEEEE-SCCTT-CCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred ccCCccCHHHHHHHhCCeEEEc-Ccccc-cccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 5666677888999999998543 22222 2233334456889999999998 4579999987643 24566666
Q ss_pred HHHHHh
Q 048817 235 SIRATF 240 (613)
Q Consensus 235 ~ik~~F 240 (613)
.+-+..
T Consensus 132 ~la~~~ 137 (165)
T 3o5y_A 132 QLTDHL 137 (165)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 59
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=65.66 E-value=3 Score=47.08 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=46.1
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-CC------ceEeeccccc----ccCCH
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-DA------GVVELGSVRS----VPESL 230 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-~~------GVvELGSt~~----I~E~~ 230 (613)
..++.| |+.|+++.+|+++++.+...-+ .+... ......+++++|||+ .+ |||.+..... -.+|.
T Consensus 75 ~~~p~~-Gi~g~v~~~~~pv~i~d~~~~~--~~~~~-~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~~~~~~ft~~d~ 150 (691)
T 3ibj_A 75 VSFPLT-GCLGQVVEDKKSIQLKDLTSED--VQQLQ-SMLGCELQAMLCVPVISRATDQVVALACAFNKLEGDLFTDEDE 150 (691)
T ss_dssp EEEECC-SSSHHHHHHCCCEEGGGSCHHH--HHHHH-HHHTSCCSCEEEEEEECSSSCSEEEEEEEESBSSSCCCCTTHH
T ss_pred eecCCc-cHHHHHHHHCCeEEeccchhcc--ccccc-cccCCccceEEEEEeEcCCCCcEEEEEEEEcCCCCCCCCHHHH
Confidence 468899 9999999999999998764321 11111 122456899999999 33 6988764422 23455
Q ss_pred HHHHH
Q 048817 231 ELVHS 235 (613)
Q Consensus 231 ~lv~~ 235 (613)
.+++.
T Consensus 151 ~lL~~ 155 (691)
T 3ibj_A 151 HVIQH 155 (691)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 60
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=63.77 E-value=1.6 Score=44.94 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=43.6
Q ss_pred ecCCCCCccceeeeCCCeEEEeCCCCCCC-ccchhhhh-hhhcCccEEEEEEcC--C----ceEeeccc
Q 048817 163 SFPRGEGGPGKCFASGKHVWLLDALKLSS-DYCVRSFL-AKSARIQTIVLISTD--A----GVVELGSV 223 (613)
Q Consensus 163 sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~-~~~~R~~~-A~saGIqTivciP~~--~----GVvELGSt 223 (613)
.++.|.|+.|+++.+|+++++.+....+. ..|.+... +...++++++|||+. + |||.+.+.
T Consensus 75 ~~~~~~g~~g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~ 143 (398)
T 1ykd_A 75 RIPADKGIAGEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNK 143 (398)
T ss_dssp EEETTSHHHHHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEE
T ss_pred ecCCCCchhhhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEecc
Confidence 56788999999999999999988754321 22332222 224678999999983 2 68888765
No 61
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=63.24 E-value=8.9 Score=34.45 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=41.5
Q ss_pred CCccce----eeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccc
Q 048817 168 EGGPGK----CFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVR 224 (613)
Q Consensus 168 ~GlpG~----a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~ 224 (613)
+|..|. ++.+|+++.+.+....+...|.+..+. ..|++.++|||. .-|||.+-+..
T Consensus 78 ~~~~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~-~~~~~s~l~vPi~~~~~l~G~l~~~~~~ 142 (172)
T 2k2n_A 78 AQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLK-SMGVASSLVVPLMHHQELWGLLVSHHAE 142 (172)
T ss_dssp GCCCCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHH-TTTCSEEEECCCSCSSCCCEEEEEEECS
T ss_pred ccccccccccccccCCceeccchhhcCCCHHHHHHHH-hcCCeEEEEEEEEECCEEEEEEEEEeCC
Confidence 455554 599999999998865555545555543 689999999998 45899988763
No 62
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=60.59 E-value=9.6 Score=35.23 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCCccce----eeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEc-----CCceEeecccccc---cCCHHHHH
Q 048817 167 GEGGPGK----CFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLIST-----DAGVVELGSVRSV---PESLELVH 234 (613)
Q Consensus 167 G~GlpG~----a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~-----~~GVvELGSt~~I---~E~~~lv~ 234 (613)
++|..|. ++.+|+++-+.+....+...|.+..+ ...|++.++|||+ .-|||.+.+...- .++.++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l-~~~~~~S~l~vPi~~~~~l~GvL~~~~~~~~~~~~~e~~ll~ 185 (208)
T 2lb5_A 107 EAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYL-KSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEELQVVQ 185 (208)
T ss_dssp GGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHH-HHTTCSEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhccCCHHHHHHH-HhcCCcEEEEEEEEECCEeEEEEEEeeCCCCCCCHHHHHHHH
Confidence 3455554 79999999888776554445555555 4689999999998 3489998886432 23455666
Q ss_pred HHHHHh
Q 048817 235 SIRATF 240 (613)
Q Consensus 235 ~ik~~F 240 (613)
.+-..+
T Consensus 186 ~la~~~ 191 (208)
T 2lb5_A 186 LLADQV 191 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 63
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=58.83 E-value=2 Score=50.22 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhh-hhhhcCccEEEEEEcCC------ceEeeccccc------ccC
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSF-LAKSARIQTIVLISTDA------GVVELGSVRS------VPE 228 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~-~A~saGIqTivciP~~~------GVvELGSt~~------I~E 228 (613)
..|+.|.|+.|.++.+|+++++.+....+ .|.+.. .....++++++|||+.. |||.+.+... -.+
T Consensus 224 ~~~p~~~gi~g~v~~~g~pv~I~D~~~dp--~f~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL~l~~~~~~~~~~ft~~ 301 (878)
T 3bjc_A 224 IRLEWNKGIVGHVAALGEPLNIKDAYEDP--RFNAEVDQITGYKTQSILCMPIKNHREEVVGVAQAINKKSGNGGTFTEK 301 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeCCccHHHHHHhcCceEEeCCcccCc--ccccccccccCCccceEEEEeeEcCCCCEEEEEEEEecCCCCCCCCCHH
Confidence 45888999999999999999998775422 122211 11245689999999844 7888886542 234
Q ss_pred CHHHHHHHHHHh
Q 048817 229 SLELVHSIRATF 240 (613)
Q Consensus 229 ~~~lv~~ik~~F 240 (613)
|..+++.+-...
T Consensus 302 D~~lL~~lA~~~ 313 (878)
T 3bjc_A 302 DEKDFAAYLAFC 313 (878)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
No 64
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=53.64 E-value=2.7 Score=49.05 Aligned_cols=61 Identities=10% Similarity=-0.086 Sum_probs=0.0
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhhhhhh-h---cCccEEEEEEc-CC------ceEeecccc
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRSFLAK-S---ARIQTIVLIST-DA------GVVELGSVR 224 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~-s---aGIqTivciP~-~~------GVvELGSt~ 224 (613)
..++.|.|+.|+++.+|+++++.+....+ .+.+..... - .+++.++|||+ .. |||+|.+..
T Consensus 406 ~~~p~~~gi~g~v~~~g~~v~i~D~~~d~--r~~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL~l~~~~ 477 (878)
T 3bjc_A 406 DANKINYMYAQYVKNTMEPLNIPDVSKDK--RFPWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVCQLVNKM 477 (878)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccchhhhHHHHHhhcCCeeeecCccccc--ccccccccccCccccccceEEEEEEecCCCCcEEEEEEEEEcC
Confidence 45778899999999999999998765322 233322221 1 56999999998 22 788887653
No 65
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.03 E-value=33 Score=26.91 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 449 ERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 449 ER~RR~kln~~f~~LrslvP~~~K~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
||++|.+...+..+-++ =..-.+||.+|+.++..|+.++..|.
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777776 12345777888888887777766654
No 66
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.10 E-value=26 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 479 LGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 479 L~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
+.+--+||++|+++..+|+.-++.+.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45677899999999999987666543
No 67
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=39.99 E-value=1.2e+02 Score=26.48 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=37.4
Q ss_pred EEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 539 VRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 539 IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
|-+.-+.++|.+.+++++|.+.|+.|........+...... ++.. ..++.+++|.+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~--i~~~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVV--IRPS-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEE--EEES-----CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEE--EEeC-----CHHHHHHHHHH
Confidence 44456789999999999999999999664433244444333 4442 45566666654
No 68
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.28 E-value=57 Score=23.27 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048817 473 MDKASLLGDAIAYINELQAKLKVMEAERENL 503 (613)
Q Consensus 473 ~dKasIL~~AI~YIk~Lq~~v~~Le~~~~~l 503 (613)
|.-+.-|+++-+-|..|+.+++.|..++..|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999988765
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.26 E-value=29 Score=25.40 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 048817 484 AYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 484 ~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
.|+.+|+.++++|+.+..+|+
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 378888888888877666554
No 70
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=33.97 E-value=1.9e+02 Score=25.25 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=38.8
Q ss_pred EEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEEeCCCccccHHHHHHHHHH
Q 048817 538 VVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLTKEKLIAAFSC 601 (613)
Q Consensus 538 ~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~ 601 (613)
.|.|..++++|.+.+|..+|.+.|+.|....+....+..+..|+ . -..+++.+.|.+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-----~d~~~a~~~L~~ 64 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-----SDPDKAYKALKD 64 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-----SCHHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-----CCHHHHHHHHHH
Confidence 35566788999999999999999999988866544443333333 2 133555665654
No 71
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=32.13 E-value=1e+02 Score=28.05 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=45.3
Q ss_pred eEEeCCeEEEEEEc-cCCCChHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEEeCCCccccHHHHHHHHHHhhhcc
Q 048817 530 IQAAHDEVVVRVSC-PLDSHPASRVIQAFKDAQITVVESKLSTG-NDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSSI 606 (613)
Q Consensus 530 V~i~g~ev~IrI~c-~~r~~~l~~Im~aLeel~L~V~~asvs~~-~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~~ 606 (613)
|....+-..|.|.. +.+.|.+.+|+++|.+.++.|.....+.. ++..-.+|+|.- -..++..++|.++...+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~-----~~~~~a~~~l~~~~~~l 92 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR-----GDYKQTLEILSERQDSI 92 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG-----GGHHHHHHHHHHSSTTT
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec-----hHHHHHHHHHHHHHHHc
Confidence 44556677888874 78899999999999999999888754322 233334455532 11244556666554433
No 72
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=30.97 E-value=23 Score=30.59 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=33.1
Q ss_pred eecCCCCCccceeeeCCCeEEEeCCCCCCCccchhh-hhhhhcCccEEEEEEc
Q 048817 162 FSFPRGEGGPGKCFASGKHVWLLDALKLSSDYCVRS-FLAKSARIQTIVLIST 213 (613)
Q Consensus 162 ~sF~~G~GlpG~a~~sg~~~Wl~~~~~~~~~~~~R~-~~A~saGIqTivciP~ 213 (613)
+.|....|..-..-..+.-+|+..++ ++.+.|.+. |+-+ -=|||||+|-
T Consensus 33 ~~i~~~~G~~n~ieI~dg~vrv~es~-CPdkiCv~~GwIs~--~Gq~IVCLPn 82 (101)
T 3ld7_A 33 FTIKGKGAQYNLMEVDGERIRIKEDN-SPDQVGVKMGWKSK--AGDTIVCLPH 82 (101)
T ss_dssp EEEECSTTCEEEEEEETTEEEEEEEC-CSSCHHHHHCCBCS--TTCEEEETTT
T ss_pred EEEEcCCCCEEEEEEECCEEEEEECC-CCCcccccCCCcCC--CCCEEEEcCC
Confidence 34443344345667778889998777 677889865 5533 2489999984
No 73
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=30.67 E-value=1.8e+02 Score=26.81 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=43.6
Q ss_pred eEEeCCeEEEEEE-ccCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 530 IQAAHDEVVVRVS-CPLDSHPASRVIQAFKDAQITVVESKLSTG---NDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 530 V~i~g~ev~IrI~-c~~r~~~l~~Im~aLeel~L~V~~asvs~~---~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
|....+-+.|.|. -+.+.|.+.+|++.|.+.++.|.....+.. ++..-.+|++... ..++..++|.++...
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~-----d~~~a~~~l~~~~~~ 83 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS-----DGRRAMEILKKLQVQ 83 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH-----HHHHHHHHHHTTTTT
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc-----cHHHHHHHHHHHHHh
Confidence 4445667788884 477899999999999999977666544433 2233334665531 123445555554333
No 74
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=29.48 E-value=1.3e+02 Score=27.28 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=38.5
Q ss_pred eEEeCCeEEEEEEc-cCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEe
Q 048817 530 IQAAHDEVVVRVSC-PLDSHPASRVIQAFKDAQITVVESKLSTG---NDMVFHTFVIKS 584 (613)
Q Consensus 530 V~i~g~ev~IrI~c-~~r~~~l~~Im~aLeel~L~V~~asvs~~---~~~~~~t~~vk~ 584 (613)
|....+-+.|.|.. +.+.|.+.+|+.+|.+.++.|.....+.. .+..-.+|+|.-
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~ 68 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK 68 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence 44556677777765 67789999999999999998877754322 234455666653
No 75
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.76 E-value=44 Score=25.62 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 048817 484 AYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 484 ~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
.||.+|+.+|..|+.++..|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988877654
No 76
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=28.32 E-value=18 Score=31.98 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=29.1
Q ss_pred cceeeeCCCeEEEeCCCCCCCccchhh-hhhhhcCccEEEEEEc
Q 048817 171 PGKCFASGKHVWLLDALKLSSDYCVRS-FLAKSARIQTIVLIST 213 (613)
Q Consensus 171 pG~a~~sg~~~Wl~~~~~~~~~~~~R~-~~A~saGIqTivciP~ 213 (613)
.-..-..+.-+|+..++ ++.+.|.+. |+-+ .| |||||+|-
T Consensus 42 ~n~IeIkdg~vrv~es~-CPdkiCv~~GwIsk-~G-q~IVCLPn 82 (114)
T 2kpp_A 42 YNLMEVDGERIRIKEDN-SPDQVGVKMGWKSK-AG-DTIVCLPH 82 (114)
T ss_dssp EEEEEEESSCEEEEEEC-CSSCHHHHHCSBCS-TT-CEEEEGGG
T ss_pred EEEEEEECCEEEEEECC-CCCeehhhcCCcCC-CC-CEEEEcCC
Confidence 34456677778888776 677889976 5543 55 99999985
No 77
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=27.89 E-value=38 Score=26.46 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 048817 484 AYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 484 ~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
.||..|+++|+.|+..+..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887765
No 78
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=27.40 E-value=28 Score=30.33 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=31.8
Q ss_pred cceeeeCCCeEEEeCCCCCCCccchhhhhhhhcCccEEEEEEcCCceEee
Q 048817 171 PGKCFASGKHVWLLDALKLSSDYCVRSFLAKSARIQTIVLISTDAGVVEL 220 (613)
Q Consensus 171 pG~a~~sg~~~Wl~~~~~~~~~~~~R~~~A~saGIqTivciP~~~GVvEL 220 (613)
.-..-..+.-+|+..++ ++.+.|.+.---...| |||||+|-.- |||+
T Consensus 45 ~n~IeI~dg~vrv~es~-CPdkiCv~~GwIs~~G-q~IVCLPnkl-vI~I 91 (104)
T 4esn_A 45 GNRLRIQNGQAKMEWAD-CPDQLCVHQKAISRTG-ESIICLPNQV-VVSV 91 (104)
T ss_dssp TEEEEEETTEEEEEEEC-CSSCHHHHSCCBCSTT-CEEEETTTTE-EEEE
T ss_pred cEEEEEECCEEEEEECC-CCCcchhhCCCcCCCC-CEEEEcCCEE-EEEE
Confidence 45566677788888776 6778898753333455 9999998522 3455
No 79
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.01 E-value=50 Score=25.47 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 048817 484 AYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 484 ~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
.||..|+++++.||.....|.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888877765
No 80
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=24.09 E-value=2.7e+02 Score=25.82 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=38.0
Q ss_pred eEEeCCeEEEEEEc-cCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEEe
Q 048817 530 IQAAHDEVVVRVSC-PLDSHPASRVIQAFKDAQITVVESKLSTG---NDMVFHTFVIKS 584 (613)
Q Consensus 530 V~i~g~ev~IrI~c-~~r~~~l~~Im~aLeel~L~V~~asvs~~---~~~~~~t~~vk~ 584 (613)
|....+.++|.|.. +.+.|.+.+|+.+|.+.++.|....-+.. ++..-.+|++.-
T Consensus 10 Ia~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~ 68 (181)
T 3s1t_A 10 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 68 (181)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEET
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEeh
Confidence 44455667777754 57889999999999999999877643322 344445666653
No 81
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=23.51 E-value=2.2e+02 Score=28.78 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=47.7
Q ss_pred eEEEEEEccCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEEeCCCccccHHHHHHHHHHhhh
Q 048817 536 EVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGND-MVFHTFVIKSQGSEQLTKEKLIAAFSCESS 604 (613)
Q Consensus 536 ev~IrI~c~~r~~~l~~Im~aLeel~L~V~~asvs~~~~-~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~ 604 (613)
...|-+..++++|.|.++|..|...|+.......-...+ ..-+.|.|.+.|. ...+.+.+||.++..
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~--~~d~~v~~aL~~L~~ 267 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH--REDQNVHNALENLRE 267 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC--TTSHHHHHHHHHHHT
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC--CCcHHHHHHHHHHHH
Confidence 444555557889999999999999999999998765543 4567888888653 223455555555543
No 82
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=22.97 E-value=2.2e+02 Score=26.73 Aligned_cols=47 Identities=9% Similarity=0.222 Sum_probs=38.4
Q ss_pred CccceEEeCCeEEEEEEccCC------CChHHHHHHHHHhCCCeEEEEEEEee
Q 048817 526 PDVDIQAAHDEVVVRVSCPLD------SHPASRVIQAFKDAQITVVESKLSTG 572 (613)
Q Consensus 526 ~~VeV~i~g~ev~IrI~c~~r------~~~l~~Im~aLeel~L~V~~asvs~~ 572 (613)
.+|.|++.++.+.|.+..... +.-+.+|-++|.+.||.+..++|+..
T Consensus 101 l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 101 VHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 467788889999999998653 23478999999999999999988754
No 83
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=22.65 E-value=2.4e+02 Score=26.88 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=46.2
Q ss_pred eEEeCCeEEEEEE-ccCCCChHHHHHHHHHhCCCeEEEEEEEe---eCCeEEEEEEEEeCCCccccHHHHHHHHHHhhhc
Q 048817 530 IQAAHDEVVVRVS-CPLDSHPASRVIQAFKDAQITVVESKLST---GNDMVFHTFVIKSQGSEQLTKEKLIAAFSCESSS 605 (613)
Q Consensus 530 V~i~g~ev~IrI~-c~~r~~~l~~Im~aLeel~L~V~~asvs~---~~~~~~~t~~vk~~~~~~~t~e~L~~aL~~~~~~ 605 (613)
|....+.+.|.|. .+.++|.+.+|+.+|.+.++.|-...-+. .+.....+|++.- -..++..+.|.++..+
T Consensus 29 Ia~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~-----~d~~~~~~~l~~~~~~ 103 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR-----DVGPAAVEKLDSLRNE 103 (200)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG-----GGHHHHHHHHHTTHHH
T ss_pred EEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch-----hhHHHHHHHHHHHHhh
Confidence 4455677888885 47899999999999999998877764322 2345666777653 1223444445554443
No 84
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=22.55 E-value=90 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=15.8
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 048817 473 MDKASLLGDAIAYINELQAK 492 (613)
Q Consensus 473 ~dKasIL~~AI~YIk~Lq~~ 492 (613)
+.+..+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45677899999999877663
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.24 E-value=65 Score=26.03 Aligned_cols=21 Identities=5% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 048817 483 IAYINELQAKLKVMEAERENL 503 (613)
Q Consensus 483 I~YIk~Lq~~v~~Le~~~~~l 503 (613)
-.||++|+.+|.+|+.....+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888655443
No 86
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.45 E-value=75 Score=22.43 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 048817 486 INELQAKLKVMEAERENLS 504 (613)
Q Consensus 486 Ik~Lq~~v~~Le~~~~~l~ 504 (613)
+++|+.+|++|-.++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 5677777777776665554
No 87
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=20.43 E-value=4.2e+02 Score=27.74 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=39.3
Q ss_pred eEEeCCeEEEEEE-ccCCCChHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEE
Q 048817 530 IQAAHDEVVVRVS-CPLDSHPASRVIQAFKDAQITVVESKLSTG---NDMVFHTFVIK 583 (613)
Q Consensus 530 V~i~g~ev~IrI~-c~~r~~~l~~Im~aLeel~L~V~~asvs~~---~~~~~~t~~vk 583 (613)
|....+.+.|.|. .+.+.+.+.+|+.+|.+.++.|.....++. .+....+|+|.
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 4556778888887 577889999999999999999888753332 23344555554
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.30 E-value=1e+02 Score=25.66 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048817 479 LGDAIAYINELQAKLKVMEAERENLS 504 (613)
Q Consensus 479 L~~AI~YIk~Lq~~v~~Le~~~~~l~ 504 (613)
+..||+-|.-||-++++|+.++..+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988776643
Done!