BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048818
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana
GN=GXM1 PE=1 SV=1
Length = 282
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 129/210 (61%), Gaps = 9/210 (4%)
Query: 60 AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
A+IHY+TS PQ TL EI V L +PCN LVFGLGHDSLMW+SLN G T+FLEE
Sbjct: 63 ALIHYSTSVITPQQTLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEE 122
Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTR---CKL 176
D + I R P L + VTY + + +AD+L+ + P G+ R C+L
Sbjct: 123 DEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGK------GPECTAIGDPRYSMCQL 176
Query: 177 VLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVD 236
L LP ++Y WD+I +D P GYY EAPGRM I+TA +MAR RK G T VF+HDV+
Sbjct: 177 ALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVN 236
Query: 237 RKVEKAYAEEFLCRKYFVKVVGKLWHFRIP 266
R++E +++ FLC Y K G+L HF IP
Sbjct: 237 REIEDKFSKAFLCEGYMKKQEGRLRHFIIP 266
>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana
GN=GXM2 PE=1 SV=1
Length = 290
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 125/207 (60%), Gaps = 3/207 (1%)
Query: 60 AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
A++HY TS PQ T E+ V L +PCN LVFGLGHDSLMWASLN G T+FLEE
Sbjct: 68 ALVHYVTSEITPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFLEE 127
Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLN 179
D + T+ + P L + V Y T + +++ LM R E C V +++C L L
Sbjct: 128 DEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTED-C--KAVSDPRDSKCALSLK 184
Query: 180 ELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKV 239
P DVY +WDVI +D P GY+ EAPGRM+ I+TA ++AR R G T VF+HD++R V
Sbjct: 185 GFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPV 244
Query: 240 EKAYAEEFLCRKYFVKVVGKLWHFRIP 266
E ++ FLC Y + G+L HF IP
Sbjct: 245 EDEFSVAFLCGGYMKEQQGRLRHFNIP 271
>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana
GN=GXM3 PE=1 SV=1
Length = 297
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 127/207 (61%), Gaps = 4/207 (1%)
Query: 60 AIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
A++HY TS PQ T E+ V L +PCN LVFGLGHDSLMWASLN G T+F+EE
Sbjct: 76 ALVHYVTSNVTPQQTFDEVSVSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFIEE 135
Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLN 179
D + + + P L + V Y T + ++D LM R E+ C V N++C L L
Sbjct: 136 DQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEE-CRS--VSDPRNSKCDLALK 192
Query: 180 ELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKV 239
+ P D Y +WD+I +D P GY+ EAPGRM+ I+TA ++AR R+ G T VF+HDV+R V
Sbjct: 193 DFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNRED-GETDVFVHDVNRPV 251
Query: 240 EKAYAEEFLCRKYFVKVVGKLWHFRIP 266
E ++ FLC+ Y + G+L HF IP
Sbjct: 252 EDEFSATFLCKGYMREQNGRLRHFTIP 278
>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1
Length = 317
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 148/267 (55%), Gaps = 20/267 (7%)
Query: 14 LILGALLTFAVTAAFLITGL--------SRTMKASIPRIYAIDSTPAAMQ----TQLLAI 61
L L A ++F T AFL+T L S+ A++ T A + T + A+
Sbjct: 27 LWLLAFVSF-FTIAFLLTLLYTTDSIISSKNNSATVSSAVNSAVTTATISQLPTTAINAM 85
Query: 62 IHYAT-SRDIPQLTLPEIRVPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGTTIFLEE 119
+HYA+ S D ++ E++ D L +P CNLLVFGL H++L+W SLN G T+F+EE
Sbjct: 86 LHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEE 145
Query: 120 DSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRY--EKYCLPPHVHLKGNTRCKLV 177
+ P + V V Y T EA L+S+ + C P L + CKL
Sbjct: 146 NRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSD--CKLG 203
Query: 178 LNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRG-VTHVFLHDVD 236
LN+LP+ VY+ +WDVI +DGPRG + PGRM++IFTAAV+AR++K THVF+HD
Sbjct: 204 LNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYY 263
Query: 237 RKVEKAYAEEFLCRKYFVKVVGKLWHF 263
R VE+ +EFLCR+ V+ L H+
Sbjct: 264 RDVERLCGDEFLCRENLVESNDLLAHY 290
>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2
SV=1
Length = 322
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 127/209 (60%), Gaps = 7/209 (3%)
Query: 60 AIIHYAT-SRDIPQLTLPEIRVPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGTTIFL 117
A++HYA+ S D ++ E++ D L AP CNLLVFGL H++L+W SLN G T+F+
Sbjct: 91 ALLHYASRSNDSFHMSYGEMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVFI 150
Query: 118 EEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYE--KYCLPPHVHLKGNTRCK 175
EE+ P + V V Y T +EA L+++ + C P L + CK
Sbjct: 151 EENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSD--CK 208
Query: 176 LVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRG-VTHVFLHD 234
L LN+LP+ VY+ +WDVIF+DGPRG E PGRM++IFTAAV+AR++K THVF+HD
Sbjct: 209 LGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPKTHVFVHD 268
Query: 235 VDRKVEKAYAEEFLCRKYFVKVVGKLWHF 263
R VE+ +EFLCR+ V+ L H+
Sbjct: 269 YYRDVERLCGDEFLCRENLVESNDLLAHY 297
>sp|Q10011|YSV5_CAEEL Uncharacterized protein T19C3.5 OS=Caenorhabditis elegans
GN=T19C3.5 PE=1 SV=2
Length = 489
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 63 HYATSRDIPQLTLPEIRVPFDALLG 87
H+ +IP++T+PEIR+PF + +G
Sbjct: 40 HHVVDEEIPKITIPEIRLPFSSSIG 64
>sp|Q98R33|SYC_MYCPU Cysteine--tRNA ligase OS=Mycoplasma pulmonis (strain UAB CTIP)
GN=cysS PE=3 SV=1
Length = 596
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 180 ELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHD----- 234
EL + N + +++ GP Y G M ++ ++ RA+K G +F+H+
Sbjct: 196 ELRKNTKNEKIFKVYLCGPTVYDEVHIGNMRSVVVVDLIVRAQKYLGKKTLFVHNITDID 255
Query: 235 ---VDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPP 267
++R ++ +E + KYF + L +RI
Sbjct: 256 DKIIERSIQSKISENKISEKYFREYKKVLKKYRIKS 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,004,477
Number of Sequences: 539616
Number of extensions: 4424365
Number of successful extensions: 12288
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12272
Number of HSP's gapped (non-prelim): 11
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)