Query 048818
Match_columns 284
No_of_seqs 92 out of 94
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 13:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01627 A_thal_3515 uncharac 100.0 2E-120 4E-125 814.6 21.5 218 54-272 4-221 (225)
2 PF04669 Polysacc_synt_4: Poly 100.0 1.2E-87 2.5E-92 592.0 -14.0 185 76-263 1-190 (190)
3 COG0421 SpeE Spermidine syntha 94.7 0.27 5.9E-06 46.3 9.9 156 77-268 64-236 (282)
4 PLN02823 spermine synthase 94.4 0.38 8.3E-06 46.2 10.4 102 84-219 98-203 (336)
5 PLN02781 Probable caffeoyl-CoA 93.1 0.37 8E-06 43.3 7.2 117 55-200 30-155 (234)
6 PF01596 Methyltransf_3: O-met 92.8 0.4 8.8E-06 42.9 7.0 120 55-203 8-135 (205)
7 PLN02476 O-methyltransferase 92.6 0.49 1.1E-05 44.6 7.6 115 58-201 85-206 (278)
8 TIGR00417 speE spermidine synt 92.6 1.7 3.6E-05 39.6 10.8 51 84-134 67-119 (270)
9 PF01564 Spermine_synth: Sperm 91.2 0.57 1.2E-05 42.6 6.3 106 83-223 70-179 (246)
10 PRK03612 spermidine synthase; 91.2 1.2 2.6E-05 44.7 9.0 146 87-269 295-460 (521)
11 PRK00811 spermidine synthase; 90.6 2.4 5.2E-05 39.2 9.8 51 84-134 71-123 (283)
12 PRK01581 speE spermidine synth 90.1 2.7 5.8E-05 41.7 10.2 147 86-268 147-313 (374)
13 PRK04457 spermidine synthase; 87.8 11 0.00023 34.7 11.7 44 88-131 65-110 (262)
14 PLN02366 spermidine synthase 87.3 4.4 9.5E-05 38.5 9.3 148 87-269 89-254 (308)
15 PLN02589 caffeoyl-CoA O-methyl 82.5 5.8 0.00013 36.7 7.5 119 57-203 45-170 (247)
16 cd02042 ParA ParA and ParB of 71.8 4.4 9.6E-05 30.6 3.0 14 190-203 40-53 (104)
17 COG0003 ArsA Predicted ATPase 67.0 1.6 3.5E-05 42.0 -0.4 26 176-201 112-138 (322)
18 PF10718 Ycf34: Hypothetical c 66.8 1.9 4.1E-05 34.5 0.0 30 176-209 43-72 (77)
19 PF12273 RCR: Chitin synthesis 60.0 6.1 0.00013 32.7 1.9 21 14-34 2-22 (130)
20 PRK00377 cbiT cobalt-precorrin 58.9 29 0.00064 29.8 5.9 59 72-130 22-84 (198)
21 PF09954 DUF2188: Uncharacteri 53.9 12 0.00026 27.2 2.3 51 189-243 10-60 (62)
22 cd02035 ArsA ArsA ATPase funct 50.9 5.2 0.00011 35.0 0.0 23 178-200 102-124 (217)
23 PRK10742 putative methyltransf 50.7 23 0.0005 33.5 4.3 30 97-128 98-127 (250)
24 cd00550 ArsA_ATPase Oxyanion-t 47.6 6.1 0.00013 35.7 -0.0 13 187-199 122-134 (254)
25 PF13659 Methyltransf_26: Meth 44.0 11 0.00023 28.7 0.8 90 92-213 3-94 (117)
26 PF06564 YhjQ: YhjQ protein; 43.8 13 0.00028 34.7 1.4 16 188-203 116-131 (243)
27 cd03110 Fer4_NifH_child This p 43.1 15 0.00033 30.4 1.7 16 188-203 91-106 (179)
28 PF11807 DUF3328: Domain of un 42.8 44 0.00096 27.8 4.4 16 150-165 165-180 (217)
29 PHA02663 hypothetical protein; 40.5 21 0.00047 31.7 2.2 20 203-222 82-102 (172)
30 TIGR00345 arsA arsenite-activa 40.1 16 0.00034 33.8 1.4 26 188-213 111-140 (284)
31 PRK13165 cytochrome c-type bio 40.0 44 0.00095 29.8 4.1 22 11-32 7-28 (160)
32 TIGR02371 ala_DH_arch alanine 39.9 17 0.00037 34.3 1.7 54 74-127 112-169 (325)
33 COG0489 Mrp ATPases involved i 39.9 11 0.00023 34.9 0.3 25 178-202 155-179 (265)
34 KOG4417 Predicted endonuclease 39.4 16 0.00034 34.8 1.3 24 179-202 105-133 (261)
35 KOG3022 Predicted ATPase, nucl 38.5 20 0.00044 35.0 2.0 79 185-275 149-237 (300)
36 PF02374 ArsA_ATPase: Anion-tr 36.7 20 0.00044 33.8 1.6 28 187-214 124-155 (305)
37 cd05013 SIS_RpiR RpiR-like pro 36.6 1.4E+02 0.0029 22.8 5.9 80 77-158 2-86 (139)
38 COG1192 Soj ATPases involved i 36.2 21 0.00045 31.5 1.5 14 188-201 118-131 (259)
39 cd02038 FleN-like FleN is a me 36.1 50 0.0011 26.9 3.6 14 190-203 45-58 (139)
40 PF13538 UvrD_C_2: UvrD-like h 34.9 8.3 0.00018 29.1 -1.0 32 188-223 67-99 (104)
41 TIGR01969 minD_arch cell divis 34.1 24 0.00052 30.3 1.5 17 188-204 107-123 (251)
42 PRK02289 4-oxalocrotonate taut 34.0 41 0.00089 24.2 2.5 47 192-238 3-49 (60)
43 cd03111 CpaE_like This protein 32.7 28 0.00061 27.3 1.6 12 191-202 44-55 (106)
44 PRK09379 membrane-bound transc 32.7 52 0.0011 31.4 3.6 29 87-115 57-93 (303)
45 TIGR00563 rsmB ribosomal RNA s 32.2 45 0.00097 32.5 3.2 32 104-135 354-391 (426)
46 PRK13159 cytochrome c-type bio 31.8 60 0.0013 28.9 3.7 22 11-32 7-28 (155)
47 PF13479 AAA_24: AAA domain 31.7 57 0.0012 28.6 3.5 30 89-122 2-34 (213)
48 PF01656 CbiA: CobQ/CobB/MinD/ 31.6 27 0.00059 28.5 1.4 15 190-204 95-109 (195)
49 TIGR01968 minD_bact septum sit 31.5 29 0.00063 29.9 1.6 16 188-203 110-125 (261)
50 PHA02518 ParA-like protein; Pr 31.4 27 0.00059 29.2 1.4 14 188-201 75-88 (211)
51 PF13840 ACT_7: ACT domain ; P 31.1 19 0.00041 26.4 0.4 32 187-221 3-34 (65)
52 PRK13150 cytochrome c-type bio 30.4 68 0.0015 28.7 3.7 38 93-145 60-99 (159)
53 PF06898 YqfD: Putative stage 30.3 45 0.00098 32.5 2.9 36 72-118 139-174 (385)
54 TIGR03202 pucB xanthine dehydr 30.2 69 0.0015 26.9 3.6 30 206-238 78-107 (190)
55 smart00633 Glyco_10 Glycosyl h 28.9 1.1E+02 0.0023 27.7 4.8 53 213-265 104-163 (254)
56 PRK13242 ureA urease subunit g 28.4 34 0.00073 28.7 1.4 16 211-226 12-27 (100)
57 cd02037 MRP-like MRP (Multiple 28.0 35 0.00075 28.3 1.5 15 188-202 66-80 (169)
58 TIGR00347 bioD dethiobiotin sy 27.8 39 0.00084 27.7 1.7 30 188-221 98-127 (166)
59 cd03287 ABC_MSH3_euk MutS3 hom 26.6 1.9E+02 0.0042 26.1 6.1 69 76-144 96-177 (222)
60 cd00390 Urease_gamma Urease ga 26.5 37 0.00081 28.3 1.4 16 211-226 9-24 (96)
61 PRK13241 ureA urease subunit g 25.8 39 0.00085 28.4 1.4 16 211-226 12-27 (100)
62 TIGR03371 cellulose_yhjQ cellu 25.8 39 0.00085 29.1 1.5 14 190-203 115-128 (246)
63 PF12847 Methyltransf_18: Meth 25.6 1.3E+02 0.0028 22.4 4.1 40 92-131 4-45 (112)
64 cd02034 CooC The accessory pro 25.6 46 0.001 27.0 1.7 31 172-202 65-99 (116)
65 PRK11670 antiporter inner memb 25.4 44 0.00095 32.5 1.8 34 90-123 106-148 (369)
66 cd02036 MinD Bacterial cell di 25.0 46 0.001 26.9 1.7 12 191-202 64-75 (179)
67 PRK12470 amidase; Provisional 24.8 1.3E+02 0.0028 29.8 5.0 93 118-229 27-124 (462)
68 TIGR02876 spore_yqfD sporulati 24.2 97 0.0021 30.5 4.0 84 12-118 83-170 (382)
69 PRK10037 cell division protein 24.1 48 0.001 29.5 1.7 15 188-202 116-130 (250)
70 COG0831 UreA Urea amidohydrola 24.1 46 0.001 27.9 1.5 16 211-226 12-27 (100)
71 TIGR03587 Pse_Me-ase pseudamin 24.0 1.9E+02 0.0041 25.5 5.4 72 64-135 17-91 (204)
72 PRK14901 16S rRNA methyltransf 23.9 46 0.00099 32.6 1.7 32 104-135 370-407 (434)
73 PRK10901 16S rRNA methyltransf 23.9 52 0.0011 32.2 2.0 34 104-137 358-397 (427)
74 cd00983 recA RecA is a bacter 23.9 2.7E+02 0.0058 27.2 6.8 67 189-255 133-212 (325)
75 TIGR00193 urease_gam urease, g 23.9 46 0.00099 28.1 1.4 16 211-226 12-27 (102)
76 TIGR03029 EpsG chain length de 23.6 48 0.001 29.6 1.6 15 187-201 210-224 (274)
77 COG5125 Uncharacterized conser 23.6 43 0.00094 31.8 1.4 90 67-156 151-252 (259)
78 PF04250 DUF429: Protein of un 23.4 62 0.0013 28.2 2.2 19 189-208 41-59 (209)
79 cd05015 SIS_PGI_1 Phosphogluco 23.2 4.6E+02 0.0099 22.1 7.9 70 73-142 2-83 (158)
80 PF03032 Brevenin: Brevenin/es 23.1 51 0.0011 23.9 1.4 16 11-27 4-19 (46)
81 PHA02913 TGF-beta-like protein 22.9 43 0.00093 30.3 1.2 18 184-203 85-103 (172)
82 PF12317 IFT46_B_C: Intraflage 22.7 64 0.0014 30.2 2.3 34 121-154 119-152 (214)
83 cd01399 GlcN6P_deaminase GlcN6 22.7 74 0.0016 27.5 2.6 29 74-102 100-128 (232)
84 COG3703 ChaC Uncharacterized p 22.4 39 0.00084 31.2 0.8 124 88-223 7-146 (190)
85 cd01983 Fer4_NifH The Fer4_Nif 22.0 63 0.0014 22.6 1.7 13 191-203 35-47 (99)
86 TIGR02469 CbiT precorrin-6Y C5 21.9 2.2E+02 0.0048 21.3 4.7 57 73-129 2-61 (124)
87 PRK00090 bioD dithiobiotin syn 21.9 70 0.0015 27.6 2.2 16 187-202 101-116 (222)
88 COG1278 CspC Cold shock protei 21.7 52 0.0011 25.6 1.3 10 225-234 22-31 (67)
89 PF00547 Urease_gamma: Urease, 21.7 52 0.0011 27.6 1.3 16 211-226 12-27 (99)
90 PRK03522 rumB 23S rRNA methylu 21.5 2.2E+02 0.0047 26.6 5.5 41 89-131 173-215 (315)
91 COG1515 Nfi Deoxyinosine 3'end 21.4 45 0.00098 31.1 1.0 23 176-198 77-104 (212)
92 PF02310 B12-binding: B12 bind 21.2 2.9E+02 0.0062 21.2 5.4 66 121-195 41-110 (121)
93 CHL00175 minD septum-site dete 21.2 57 0.0012 29.3 1.6 14 189-202 126-139 (281)
94 PF13847 Methyltransf_31: Meth 21.1 2E+02 0.0043 23.3 4.6 40 90-129 4-46 (152)
95 smart00204 TGFB Transforming g 21.0 48 0.001 26.7 1.0 19 183-203 8-27 (102)
96 PRK07402 precorrin-6B methylas 20.9 2.3E+02 0.0049 24.2 5.1 60 72-131 22-84 (196)
97 COG1105 FruK Fructose-1-phosph 20.8 2E+02 0.0043 28.1 5.3 88 69-156 107-208 (310)
98 TIGR03018 pepcterm_TyrKin exop 20.8 58 0.0013 28.2 1.5 51 73-123 10-77 (207)
99 PRK14903 16S rRNA methyltransf 20.7 88 0.0019 30.9 2.9 33 104-136 352-390 (431)
100 PF09125 COX2-transmemb: Cytoc 20.7 1.3E+02 0.0027 21.5 2.9 19 10-32 12-30 (38)
101 COG0445 GidA Flavin-dependent 20.5 1.1E+02 0.0023 32.9 3.5 38 188-238 3-40 (621)
102 PRK13869 plasmid-partitioning 20.5 58 0.0013 31.9 1.6 50 73-122 87-161 (405)
103 cd01080 NAD_bind_m-THF_DH_Cycl 20.2 5E+02 0.011 22.7 7.2 42 78-119 32-75 (168)
No 1
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=100.00 E-value=1.7e-120 Score=814.55 Aligned_cols=218 Identities=43% Similarity=0.730 Sum_probs=211.3
Q ss_pred cHHHHHHHHHHhhcCCCCCCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCC
Q 048818 54 MQTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPA 133 (284)
Q Consensus 54 ~~~~~~AlvHYAtsn~tpqqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~ 133 (284)
++..++|||||||||+|||||.+||+++++||++||||||||||||||||||+||||||||||||||++||+++++++|+
T Consensus 4 p~~~a~AlvhYatsn~t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~~~~p~ 83 (225)
T TIGR01627 4 PLSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVNPPN 83 (225)
T ss_pred chhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHhhcCCc
Confidence 44558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHh
Q 048818 134 LRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIF 213 (284)
Q Consensus 134 leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIy 213 (284)
||+|+|+|+|+++||++||+++|++|+|+|+|+.++ +|+|||||||||+||||++|||||||||+||+|||||||+|||
T Consensus 84 leay~V~Y~t~~~~a~~LL~~~~~~~~C~p~~~~~~-~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~aIy 162 (225)
T TIGR01627 84 TRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQG-SSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIY 162 (225)
T ss_pred ceEEEEEeehhhhhHHHHHHHhccCCcccCCCCccc-cCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhhHH
Confidence 999999999999999999999998899999998665 8999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCceeEEEecCChHHHHHHHHhhccccchhhcccceeeEEeCCCCCCC
Q 048818 214 TAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPGAYAI 272 (284)
Q Consensus 214 TAavmAR~r~~gg~TdVfVHDvdR~VE~~~s~eFLC~~nlv~~~grL~HF~Ip~~~~~~ 272 (284)
|||||||+|++||+||||||||||+|||+||+||||++|||+++||||||+||++++.+
T Consensus 163 TAav~AR~r~~g~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~ 221 (225)
T TIGR01627 163 TAAVLARKGSSGSTTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNAS 221 (225)
T ss_pred HHHHHHHhccCCCCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCC
Confidence 99999999998778999999999999999999999999999999999999999998754
No 2
>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins. ; PDB: 2JYN_A.
Probab=100.00 E-value=1.2e-87 Score=592.03 Aligned_cols=185 Identities=52% Similarity=0.898 Sum_probs=106.7
Q ss_pred hhhhcHHHHhccCCC-CcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCCceeEEEeeecccccHHHHHHH
Q 048818 76 PEIRVPFDALLGLAP-CNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSS 154 (284)
Q Consensus 76 ~Ei~~~~~vL~~raP-CNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~leay~V~Y~T~~~ea~~LL~~ 154 (284)
.||+.++++|++++| |||||||||||||||+++||||||||||||++|++++++++|++++|+|+|+|++.++++||+.
T Consensus 1 ~E~~~a~~~l~~~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~~ 80 (190)
T PF04669_consen 1 IEIAWAAKVLQHREPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLSK 80 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSSH
T ss_pred CcHHHHHHHHHHhCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhCc
Confidence 599999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhcCCCce--eEEE
Q 048818 155 YRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVT--HVFL 232 (284)
Q Consensus 155 ~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~gg~T--dVfV 232 (284)
+|+ ++|+|+|+.. +|+|||||||||++||+++|||||||||+||+|+|||||+||||||||||+|+.++.| ||||
T Consensus 81 ~~~-~~C~~~~~~~--~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~VfV 157 (190)
T PF04669_consen 81 ARS-PECRPVQNLR--FSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVFV 157 (190)
T ss_dssp H------------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEEE
T ss_pred ccc-cccccccccc--ccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEEE
Confidence 998 9999999963 9999999999999999999999999999999999999999999999999999987655 9999
Q ss_pred ecCChHHHHHHHHhhccccchhhcccc--eeeE
Q 048818 233 HDVDRKVEKAYAEEFLCRKYFVKVVGK--LWHF 263 (284)
Q Consensus 233 HDvdR~VE~~~s~eFLC~~nlv~~~gr--L~HF 263 (284)
|||||+|||+||+||||.+|+++++|+ ||||
T Consensus 158 hdv~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF 190 (190)
T PF04669_consen 158 HDVDRPVEKWFSEEFLCIEILRNREGRNDLWHF 190 (190)
T ss_dssp -HH----------HHHHHHHHHHHTTTTGGG--
T ss_pred EcccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence 999999999999999999999999999 9999
No 3
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.73 E-value=0.27 Score=46.33 Aligned_cols=156 Identities=18% Similarity=0.277 Sum_probs=114.0
Q ss_pred hhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCce--eEEEeeecccccHHHHH
Q 048818 77 EIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALR--VHTVTYRTHLYEADHLM 152 (284)
Q Consensus 77 Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~le--ay~V~Y~T~~~ea~~LL 152 (284)
|.-+-...+.+-.|=+.||-|+|--+.++..+.|. -+-+..|=|+..|+-.++-.|... +++=+-.-.+.|+.+.|
T Consensus 64 Eml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v 143 (282)
T COG0421 64 EMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL 143 (282)
T ss_pred HHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence 44455555666667799999999999999999998 699999999999999998877765 44444445557777777
Q ss_pred HHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhh---cCCC--c
Q 048818 153 SSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARAR---KSRG--V 227 (284)
Q Consensus 153 ~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~gg--~ 227 (284)
+. | + -++|||++|.-- |+.|| .+.||.-..--.+ +.+| .
T Consensus 144 ~~------~--------------------~-----~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi~v 187 (282)
T COG0421 144 RD------C--------------------E-----EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGIFV 187 (282)
T ss_pred Hh------C--------------------C-----CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcEEE
Confidence 71 1 1 168999999766 44444 4566665544333 3333 1
Q ss_pred e---eEEEe-----cCChHHHHHHHHhhccccchhhcccceeeEEeCCC
Q 048818 228 T---HVFLH-----DVDRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPG 268 (284)
Q Consensus 228 T---dVfVH-----DvdR~VE~~~s~eFLC~~nlv~~~grL~HF~Ip~~ 268 (284)
+ +-|.| +.-|.++++|+..=...-.+-.-.+..|-|.+.+.
T Consensus 188 ~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~ 236 (282)
T COG0421 188 AQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF 236 (282)
T ss_pred EecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence 2 25666 58899999999888888888888888999999663
No 4
>PLN02823 spermine synthase
Probab=94.44 E-value=0.38 Score=46.20 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=67.1
Q ss_pred HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCce-eE-EEeeecccccHHHHHHHcccCC
Q 048818 84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALR-VH-TVTYRTHLYEADHLMSSYRYEK 159 (284)
Q Consensus 84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~le-ay-~V~Y~T~~~ea~~LL~~~r~~~ 159 (284)
.+....|-+.||.|+|--++....+.|. .+-+.+|=|+.-++-.++-.|... ++ +=+-+-...|+.+.|+..
T Consensus 98 l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---- 173 (336)
T PLN02823 98 LLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---- 173 (336)
T ss_pred HhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC----
Confidence 3444579999999999888877777764 467899999999999888766321 11 112223345666655410
Q ss_pred CCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHH
Q 048818 160 YCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMA 219 (284)
Q Consensus 160 ~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmA 219 (284)
+-++|||++|.+. |...|-....||.-.+.
T Consensus 174 ---------------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~ 203 (336)
T PLN02823 174 ---------------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE 203 (336)
T ss_pred ---------------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence 1259999999875 43333345688876554
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.05 E-value=0.37 Score=43.29 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhcC--CCCCC--ChhhhhcHHHHhccCCCCcEEEecc--Cchhhhhhh-cCCCCceeEeccChhHHHHH
Q 048818 55 QTQLLAIIHYATSR--DIPQL--TLPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWAS-LNPRGTTIFLEEDSKLVHTI 127 (284)
Q Consensus 55 ~~~~~AlvHYAtsn--~tpqq--t~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~a-LN~gGrTvFLEEd~~~i~~v 127 (284)
+..++.+.+||-.+ ..++| +.++-+.+..+++...|=++|-.|- |..++.+++ +..+|+-+.+|-|+++++..
T Consensus 30 ~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A 109 (234)
T PLN02781 30 HELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG 109 (234)
T ss_pred CHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 34567777887755 33543 4444444444444455889999985 555565554 44579999999999999887
Q ss_pred hhhC--CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCC
Q 048818 128 LARA--PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRG 200 (284)
Q Consensus 128 ~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~G 200 (284)
++.. .+++ ..| +-...+|.+.|..+..+++ +-.+|+|++|++++
T Consensus 110 ~~n~~~~gl~-~~i--~~~~gda~~~L~~l~~~~~--------------------------~~~fD~VfiDa~k~ 155 (234)
T PLN02781 110 LEFIKKAGVD-HKI--NFIQSDALSALDQLLNNDP--------------------------KPEFDFAFVDADKP 155 (234)
T ss_pred HHHHHHcCCC-CcE--EEEEccHHHHHHHHHhCCC--------------------------CCCCCEEEECCCHH
Confidence 7643 2333 233 3345677777764432210 12689999999873
No 6
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.75 E-value=0.4 Score=42.85 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhcCC-CCCCC--hhhhhcHHHHhccCCCCcEEEecc--Cchhhhhh-hcCCCCceeEeccChhHHHHHh
Q 048818 55 QTQLLAIIHYATSRD-IPQLT--LPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWA-SLNPRGTTIFLEEDSKLVHTIL 128 (284)
Q Consensus 55 ~~~~~AlvHYAtsn~-tpqqt--~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~ 128 (284)
+..++.|-+++..+. .++|+ ..+-+.+...++..-|-|.|-+|- |.-++.|+ ++-.+|+-+=+|-|+++++..+
T Consensus 8 ~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~ 87 (205)
T PF01596_consen 8 PELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR 87 (205)
T ss_dssp THHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH
Confidence 444777888888765 55553 345555555555577999999975 77777777 5667899999999999988776
Q ss_pred hhC--CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCC
Q 048818 129 ARA--PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYA 203 (284)
Q Consensus 129 ~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~p 203 (284)
+.. -+++ ..|++ ...+|.+.|..+..+.. +-.+|+|.|||.++-++
T Consensus 88 ~~~~~ag~~-~~I~~--~~gda~~~l~~l~~~~~--------------------------~~~fD~VFiDa~K~~y~ 135 (205)
T PF01596_consen 88 ENFRKAGLD-DRIEV--IEGDALEVLPELANDGE--------------------------EGQFDFVFIDADKRNYL 135 (205)
T ss_dssp HHHHHTTGG-GGEEE--EES-HHHHHHHHHHTTT--------------------------TTSEEEEEEESTGGGHH
T ss_pred HHHHhcCCC-CcEEE--EEeccHhhHHHHHhccC--------------------------CCceeEEEEcccccchh
Confidence 522 2332 23333 34778887775442211 23689999999886544
No 7
>PLN02476 O-methyltransferase
Probab=92.58 E-value=0.49 Score=44.63 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=72.0
Q ss_pred HHHHHHHhhcCCCC--CCChhhhhcHHHHhccCCCCcEEEecc--Cchhhhhh-hcCCCCceeEeccChhHHHHHhhhC-
Q 048818 58 LLAIIHYATSRDIP--QLTLPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWA-SLNPRGTTIFLEEDSKLVHTILARA- 131 (284)
Q Consensus 58 ~~AlvHYAtsn~tp--qqt~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~~~~- 131 (284)
++.|.+|+..+.-+ +.+.++-+.+..+++...|=++|=.|- |.-++.++ ++..+|+-+=+|-|+++++..++..
T Consensus 85 L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~ 164 (278)
T PLN02476 85 LRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE 164 (278)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 44555565554223 345555566666666677889999976 44444333 3456899999999999988776543
Q ss_pred -CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCC
Q 048818 132 -PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGY 201 (284)
Q Consensus 132 -p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy 201 (284)
-+++ +.|+. ...+|.+.|..+..+. .+-.+|+|+|||+++-
T Consensus 165 ~aGl~-~~I~l--i~GdA~e~L~~l~~~~--------------------------~~~~FD~VFIDa~K~~ 206 (278)
T PLN02476 165 LAGVS-HKVNV--KHGLAAESLKSMIQNG--------------------------EGSSYDFAFVDADKRM 206 (278)
T ss_pred HcCCC-CcEEE--EEcCHHHHHHHHHhcc--------------------------cCCCCCEEEECCCHHH
Confidence 3444 34433 3467777776443110 0134899999999853
No 8
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=92.58 E-value=1.7 Score=39.61 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=40.1
Q ss_pred HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCc
Q 048818 84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPAL 134 (284)
Q Consensus 84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~l 134 (284)
.+....|-+.|+.|.|--.+....+.++ .+.+.+|-|+..++..++..|.+
T Consensus 67 l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 67 LFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred hhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence 3445567899999999988877777775 57889999999999888765543
No 9
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.24 E-value=0.57 Score=42.61 Aligned_cols=106 Identities=18% Similarity=0.285 Sum_probs=68.2
Q ss_pred HHhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCceeE--EEeeecccccHHHHHHHcccC
Q 048818 83 DALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALRVH--TVTYRTHLYEADHLMSSYRYE 158 (284)
Q Consensus 83 ~vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~leay--~V~Y~T~~~ea~~LL~~~r~~ 158 (284)
-++....|-|.||.|+|--+..-..+.|. .+...+|-||.-++-.++-+|....- +=+.+....||.+.|+..
T Consensus 70 ~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~--- 146 (246)
T PF01564_consen 70 PLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET--- 146 (246)
T ss_dssp HHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS---
T ss_pred HhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc---
Confidence 34445579999999999999998888886 67889999999888777644432110 011122346777777621
Q ss_pred CCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc
Q 048818 159 KYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK 223 (284)
Q Consensus 159 ~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~ 223 (284)
+++ ++|||++|.+. |..|+-. .||.-.....++
T Consensus 147 -----------------------~~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~~~ 179 (246)
T PF01564_consen 147 -----------------------QEE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLCKR 179 (246)
T ss_dssp -----------------------SST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHHHH
T ss_pred -----------------------cCC----cccEEEEeCCC---CCCCccc--ccCHHHHHHHHh
Confidence 122 69999999988 4444433 777766655543
No 10
>PRK03612 spermidine synthase; Provisional
Probab=91.18 E-value=1.2 Score=44.69 Aligned_cols=146 Identities=17% Similarity=0.250 Sum_probs=82.6
Q ss_pred cCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhh--hCCCcee--EE-EeeecccccHHHHHHHcccCC
Q 048818 87 GLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILA--RAPALRV--HT-VTYRTHLYEADHLMSSYRYEK 159 (284)
Q Consensus 87 ~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~--~~p~lea--y~-V~Y~T~~~ea~~LL~~~r~~~ 159 (284)
.+.|-+.|+.|.|--...-..+.|+ .+-+.+|=|++-++..++ ..|++.. ++ =+.+-...|+.+.++.
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----- 369 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----- 369 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence 3568999999999888776667775 489999999999998887 3333321 11 0111123455554431
Q ss_pred CCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhh---cCCCceeEE-----
Q 048818 160 YCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARAR---KSRGVTHVF----- 231 (284)
Q Consensus 160 ~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~gg~TdVf----- 231 (284)
.+ -++|+|++|.|.-+. |+ ....||.......+ |+|| .=|.
T Consensus 370 ---------------------~~-----~~fDvIi~D~~~~~~---~~-~~~L~t~ef~~~~~~~L~pgG-~lv~~~~~~ 418 (521)
T PRK03612 370 ---------------------LA-----EKFDVIIVDLPDPSN---PA-LGKLYSVEFYRLLKRRLAPDG-LLVVQSTSP 418 (521)
T ss_pred ---------------------CC-----CCCCEEEEeCCCCCC---cc-hhccchHHHHHHHHHhcCCCe-EEEEecCCc
Confidence 11 158999999876332 22 13355554443333 2433 2121
Q ss_pred Eec--CChHHHHHHHHh-hccccch--hhcccceeeEEeCCCC
Q 048818 232 LHD--VDRKVEKAYAEE-FLCRKYF--VKVVGKLWHFRIPPGA 269 (284)
Q Consensus 232 VHD--vdR~VE~~~s~e-FLC~~nl--v~~~grL~HF~Ip~~~ 269 (284)
.|+ .-.++.+...+. |-+..|. +.+-| .|.|.+-+.+
T Consensus 419 ~~~~~~~~~i~~~l~~~gf~v~~~~~~vps~g-~w~f~~as~~ 460 (521)
T PRK03612 419 YFAPKAFWSIEATLEAAGLATTPYHVNVPSFG-EWGFVLAGAG 460 (521)
T ss_pred ccchHHHHHHHHHHHHcCCEEEEEEeCCCCcc-hhHHHeeeCC
Confidence 122 123456666666 5333332 23445 8889886543
No 11
>PRK00811 spermidine synthase; Provisional
Probab=90.61 E-value=2.4 Score=39.15 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=40.8
Q ss_pred HhccCCCCcEEEeccCchhhhhhhcCC-C-CceeEeccChhHHHHHhhhCCCc
Q 048818 84 ALLGLAPCNLLVFGLGHDSLMWASLNP-R-GTTIFLEEDSKLVHTILARAPAL 134 (284)
Q Consensus 84 vL~~raPCNfLVFGLg~dslmW~aLN~-g-GrTvFLEEd~~~i~~v~~~~p~l 134 (284)
.+....|-+.||.|.|--+..-..+.+ + .+-+.+|=|+.-++..++..|.+
T Consensus 71 ~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~ 123 (283)
T PRK00811 71 LFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI 123 (283)
T ss_pred HhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence 344456899999999999888877887 3 47799999999999888866643
No 12
>PRK01581 speE spermidine synthase; Validated
Probab=90.10 E-value=2.7 Score=41.70 Aligned_cols=147 Identities=20% Similarity=0.276 Sum_probs=87.2
Q ss_pred ccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCce-----eE-EEeeecccccHHHHHHHccc
Q 048818 86 LGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALR-----VH-TVTYRTHLYEADHLMSSYRY 157 (284)
Q Consensus 86 ~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~le-----ay-~V~Y~T~~~ea~~LL~~~r~ 157 (284)
....|=+.||.|.|--..+=..+.|. ++-+-+|=|+.-++-.++ +|.+. ++ +=+-+-.+.||.+.|..
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--- 222 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSS--- 222 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHh---
Confidence 34558899999999777666666654 688889999999888775 44432 11 11222234555555541
Q ss_pred CCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc---CCCc--e----
Q 048818 158 EKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK---SRGV--T---- 228 (284)
Q Consensus 158 ~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~---~gg~--T---- 228 (284)
. +-++|||++|.|....+ .....||...+...++ +||. +
T Consensus 223 -----------------------~-----~~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 223 -----------------------P-----SSLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred -----------------------c-----CCCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 0 12599999998763322 2477888776665543 4442 0
Q ss_pred eEEEecCChHHHHHHHHhhccccchh---hcccceeeEEeCCC
Q 048818 229 HVFLHDVDRKVEKAYAEEFLCRKYFV---KVVGKLWHFRIPPG 268 (284)
Q Consensus 229 dVfVHDvdR~VE~~~s~eFLC~~nlv---~~~grL~HF~Ip~~ 268 (284)
-.+-.++-..+-+.+.+.|+--.... .+-|-+|=|.|.+.
T Consensus 271 p~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 271 PADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred hhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeC
Confidence 00111222335666677777554332 23466799998654
No 13
>PRK04457 spermidine synthase; Provisional
Probab=87.81 E-value=11 Score=34.68 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=36.5
Q ss_pred CCCCcEEEeccCchhhh--hhhcCCCCceeEeccChhHHHHHhhhC
Q 048818 88 LAPCNLLVFGLGHDSLM--WASLNPRGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 88 raPCNfLVFGLg~dslm--W~aLN~gGrTvFLEEd~~~i~~v~~~~ 131 (284)
..|-+.|+.|+|.-++. |+...++++-+-+|-||..++..++.+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f 110 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF 110 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence 34788999999888764 667778889999999999999888764
No 14
>PLN02366 spermidine synthase
Probab=87.34 E-value=4.4 Score=38.50 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=84.6
Q ss_pred cCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCCCcee-E-EEeeecccccHHHHHHHcccCCCCC
Q 048818 87 GLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAPALRV-H-TVTYRTHLYEADHLMSSYRYEKYCL 162 (284)
Q Consensus 87 ~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p~lea-y-~V~Y~T~~~ea~~LL~~~r~~~~C~ 162 (284)
...|=+.||.|.|.-.+.-..+.|. .+-+-+|=|+.-|+-.++.+|.+.. + +=+.+-...+|.+.|+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~--------- 159 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK--------- 159 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh---------
Confidence 3458899999999887776666664 3667889899998888877665310 0 0011222244444443
Q ss_pred CCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc---CCCc--e---eEEEe-
Q 048818 163 PPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK---SRGV--T---HVFLH- 233 (284)
Q Consensus 163 p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~---~gg~--T---dVfVH- 233 (284)
+.| +-++|||++|++....| + ...||...+...++ +||. + ..+.|
T Consensus 160 -----------------~~~----~~~yDvIi~D~~dp~~~--~---~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~ 213 (308)
T PLN02366 160 -----------------NAP----EGTYDAIIVDSSDPVGP--A---QELFEKPFFESVARALRPGGVVCTQAESMWLHM 213 (308)
T ss_pred -----------------hcc----CCCCCEEEEcCCCCCCc--h---hhhhHHHHHHHHHHhcCCCcEEEECcCCcccch
Confidence 222 12599999999886544 1 33566555544432 4442 1 22332
Q ss_pred cCChHHHHHHHHhhc--cccch--hh-cccceeeEEeCCCC
Q 048818 234 DVDRKVEKAYAEEFL--CRKYF--VK-VVGKLWHFRIPPGA 269 (284)
Q Consensus 234 DvdR~VE~~~s~eFL--C~~nl--v~-~~grL~HF~Ip~~~ 269 (284)
+.-+.+-+.+...|- ..-|. |- -.|-.|-|.+.+..
T Consensus 214 ~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 214 DLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 333456666777771 22111 11 22457999996654
No 15
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=82.50 E-value=5.8 Score=36.69 Aligned_cols=119 Identities=15% Similarity=0.185 Sum_probs=78.8
Q ss_pred HHHHHHHHhhcCCCCCC--ChhhhhcHHHHhccCCCCcEEEecc--Cchhhhhh-hcCCCCceeEeccChhHHHHHhhhC
Q 048818 57 QLLAIIHYATSRDIPQL--TLPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWA-SLNPRGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 57 ~~~AlvHYAtsn~tpqq--t~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~~~~ 131 (284)
.++.+.++|..+..|.| +.++-+.+..+++...|=+.|-.|- |.-++.++ ++..+|+-+=+|=|+++++..++..
T Consensus 45 ~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~ 124 (247)
T PLN02589 45 SMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI 124 (247)
T ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777888887655644 4666677777776677999999985 55555443 3456899999999999987666432
Q ss_pred --CCceeEEEeeecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCC
Q 048818 132 --PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYA 203 (284)
Q Consensus 132 --p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~p 203 (284)
-++. ..|.+ ...+|.+.|..+..+. -|+-.+|+|.|||-++-++
T Consensus 125 ~~ag~~-~~I~~--~~G~a~e~L~~l~~~~-------------------------~~~~~fD~iFiDadK~~Y~ 170 (247)
T PLN02589 125 QKAGVA-HKIDF--REGPALPVLDQMIEDG-------------------------KYHGTFDFIFVDADKDNYI 170 (247)
T ss_pred HHCCCC-CceEE--EeccHHHHHHHHHhcc-------------------------ccCCcccEEEecCCHHHhH
Confidence 2332 45544 3457777776443210 1234599999999876554
No 16
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=71.84 E-value=4.4 Score=30.63 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=12.0
Q ss_pred ccEEEEeCCCCCCC
Q 048818 190 WDVIFIDGPRGYYA 203 (284)
Q Consensus 190 WDvImVDgP~Gy~p 203 (284)
.|+|+||.|.+..+
T Consensus 40 ~d~viiD~p~~~~~ 53 (104)
T cd02042 40 YDYIIIDTPPSLGL 53 (104)
T ss_pred CCEEEEeCcCCCCH
Confidence 79999999997754
No 17
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=67.03 E-value=1.6 Score=42.02 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=19.6
Q ss_pred ccccCCChhhhcccccEEEEe-CCCCC
Q 048818 176 LVLNELPDDVYNREWDVIFID-GPRGY 201 (284)
Q Consensus 176 LAL~~LP~evYe~eWDvImVD-gP~Gy 201 (284)
+++..+=..+.+-+||+|+|| +|+|.
T Consensus 112 ~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 112 LALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 344555566778889999999 67886
No 18
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=66.76 E-value=1.9 Score=34.52 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=22.1
Q ss_pred ccccCCChhhhcccccEEEEeCCCCCCCCCCCch
Q 048818 176 LVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRM 209 (284)
Q Consensus 176 LAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM 209 (284)
.-|+++++..|++||||+=-+ -|-|-|||-
T Consensus 43 VnI~~~~~~~~~~EWDVv~C~----SF~ee~GkW 72 (77)
T PF10718_consen 43 VNIRSLKNGEIEMEWDVVGCL----SFVEEPGKW 72 (77)
T ss_pred EEEEeCCCCcEEEEEEecccc----cchhcCCch
Confidence 667899999999999997432 245556653
No 19
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=60.04 E-value=6.1 Score=32.66 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 048818 14 LILGALLTFAVTAAFLITGLS 34 (284)
Q Consensus 14 w~~~l~~~~~~~~a~~~t~~~ 34 (284)
|+|.++|+.+|.+.|++...+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 555445555555555554433
No 20
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=58.86 E-value=29 Score=29.76 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=41.2
Q ss_pred CCChhhhhcHH-HHhccCCCCcEEEeccCchhh--hhhh-cCCCCceeEeccChhHHHHHhhh
Q 048818 72 QLTLPEIRVPF-DALLGLAPCNLLVFGLGHDSL--MWAS-LNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 72 qqt~~Ei~~~~-~vL~~raPCNfLVFGLg~dsl--mW~a-LN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
.+|.+|++... .-+.-.....+|-+|-|.-.+ .++. +..+|+-+-+|-++..++..+++
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 59999998765 333334457899999966544 4433 34567788889999998877654
No 21
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=53.86 E-value=12 Score=27.22 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=35.9
Q ss_pred cccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhcCCCceeEEEecCChHHHHHH
Q 048818 189 EWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRKVEKAY 243 (284)
Q Consensus 189 eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~gg~TdVfVHDvdR~VE~~~ 243 (284)
.|-|-.-++- .-.-..+-+-.||=-|-.||+. .+.+.|+||+-|..|++..
T Consensus 10 ~W~v~~eg~~-ra~~~~~Tk~eAi~~Ar~~a~~---~~~~el~Ih~~dG~i~~~~ 60 (62)
T PF09954_consen 10 GWAVKKEGAK-RASKTFDTKAEAIEAARELAKN---QGGGELIIHGRDGKIREER 60 (62)
T ss_pred CceEEeCCCc-ccccccCcHHHHHHHHHHHHHh---CCCcEEEEECCCCeEEEee
Confidence 3766654332 1234455677899988888876 3579999999999987643
No 22
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=50.88 E-value=5.2 Score=35.03 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=16.3
Q ss_pred ccCCChhhhcccccEEEEeCCCC
Q 048818 178 LNELPDDVYNREWDVIFIDGPRG 200 (284)
Q Consensus 178 L~~LP~evYe~eWDvImVDgP~G 200 (284)
+..|=+.+-+.+||+|+||+|.+
T Consensus 102 ~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 102 LLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred HHHHHHHHhcCCCCEEEECCCCc
Confidence 44454555444699999999985
No 23
>PRK10742 putative methyltransferase; Provisional
Probab=50.65 E-value=23 Score=33.49 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=25.8
Q ss_pred ccCchhhhhhhcCCCCceeEeccChhHHHHHh
Q 048818 97 GLGHDSLMWASLNPRGTTIFLEEDSKLVHTIL 128 (284)
Q Consensus 97 GLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~ 128 (284)
|||.|++.-+++ |++.+++|-||.-..-++
T Consensus 98 GlG~Da~~las~--G~~V~~vEr~p~vaalL~ 127 (250)
T PRK10742 98 GLGRDAFVLASV--GCRVRMLERNPVVAALLD 127 (250)
T ss_pred CccHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 999999999998 888889998887766555
No 24
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=47.57 E-value=6.1 Score=35.73 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=11.0
Q ss_pred cccccEEEEeCCC
Q 048818 187 NREWDVIFIDGPR 199 (284)
Q Consensus 187 e~eWDvImVDgP~ 199 (284)
+.+||+|+||+|.
T Consensus 122 ~~~yD~VVvDtpP 134 (254)
T cd00550 122 EAEYDVVVFDTAP 134 (254)
T ss_pred cCCCCEEEECCCC
Confidence 4589999999875
No 25
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=43.95 E-value=11 Score=28.65 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=50.7
Q ss_pred cEEEeccCchhhhhhhcCCC-CceeEeccChhHHHHHhhhCCCcee-EEEeeecccccHHHHHHHcccCCCCCCCccCCC
Q 048818 92 NLLVFGLGHDSLMWASLNPR-GTTIFLEEDSKLVHTILARAPALRV-HTVTYRTHLYEADHLMSSYRYEKYCLPPHVHLK 169 (284)
Q Consensus 92 NfLVFGLg~dslmW~aLN~g-GrTvFLEEd~~~i~~v~~~~p~lea-y~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr 169 (284)
.+|-.|-|--.++..++..+ .+.+-+|=||..++..+.+.+.... ..++ -...++.++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~--~~~~D~~~~------------------ 62 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVE--VIVGDARDL------------------ 62 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEE--EEESHHHHH------------------
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEE--EEECchhhc------------------
Confidence 35667888888888888887 7888899999988877765544221 0000 111222222
Q ss_pred CcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHh
Q 048818 170 GNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIF 213 (284)
Q Consensus 170 ~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIy 213 (284)
+.+.-+-++|+|+-|-|-+...+.+.....++
T Consensus 63 ------------~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~ 94 (117)
T PF13659_consen 63 ------------PEPLPDGKFDLIVTNPPYGPRSGDKAALRRLY 94 (117)
T ss_dssp ------------HHTCTTT-EEEEEE--STTSBTT----GGCHH
T ss_pred ------------hhhccCceeEEEEECCCCccccccchhhHHHH
Confidence 22223456999999999987655444443333
No 26
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=43.76 E-value=13 Score=34.75 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.8
Q ss_pred ccccEEEEeCCCCCCC
Q 048818 188 REWDVIFIDGPRGYYA 203 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~p 203 (284)
-.||+|+||.|.|..|
T Consensus 116 ~~~~~iliD~P~g~~~ 131 (243)
T PF06564_consen 116 GPYDWILIDTPPGPSP 131 (243)
T ss_pred CCCCEEEEeCCCCCcH
Confidence 4699999999998765
No 27
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=43.06 E-value=15 Score=30.41 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=13.7
Q ss_pred ccccEEEEeCCCCCCC
Q 048818 188 REWDVIFIDGPRGYYA 203 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~p 203 (284)
-++|+|+||.|.|+.+
T Consensus 91 ~~~d~viiDtpp~~~~ 106 (179)
T cd03110 91 EGAELIIIDGPPGIGC 106 (179)
T ss_pred cCCCEEEEECcCCCcH
Confidence 4789999999999864
No 28
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=42.76 E-value=44 Score=27.79 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=8.8
Q ss_pred HHHHHcccCCCCCCCc
Q 048818 150 HLMSSYRYEKYCLPPH 165 (284)
Q Consensus 150 ~LL~~~r~~~~C~p~~ 165 (284)
-=++.+|++-.|.+-.
T Consensus 165 HC~d~LRq~imC~aD~ 180 (217)
T PF11807_consen 165 HCLDYLRQSIMCHADT 180 (217)
T ss_pred HHHHHHHHHhhccCCC
Confidence 3355566666666643
No 29
>PHA02663 hypothetical protein; Provisional
Probab=40.51 E-value=21 Score=31.74 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=16.9
Q ss_pred CCCCCch-hhHhhHHHHHHhh
Q 048818 203 AEAPGRM-ATIFTAAVMARAR 222 (284)
Q Consensus 203 peaPGRM-~aIyTAavmAR~r 222 (284)
|.+|||| .||=-.|.|-|--
T Consensus 82 ptspgrmvtavelcaqmgr~w 102 (172)
T PHA02663 82 PTSPGRMVTAVELCAQMGRLW 102 (172)
T ss_pred CCCCcchhHHHHHHHHHHHHH
Confidence 6799999 8888889998853
No 30
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=40.06 E-value=16 Score=33.82 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=18.9
Q ss_pred ccccEEEEe-CCCCC---CCCCCCchhhHh
Q 048818 188 REWDVIFID-GPRGY---YAEAPGRMATIF 213 (284)
Q Consensus 188 ~eWDvImVD-gP~Gy---~peaPGRM~aIy 213 (284)
-+||+|+|| +|+|. +=+.|.+|....
T Consensus 111 ~~yD~iVvDtaPtghtLrlL~lP~~l~~~l 140 (284)
T TIGR00345 111 NEFDVVIFDTAPTGHTLRLLQLPEVLSSFL 140 (284)
T ss_pred ccCCEEEECCCChHHHHHHHhhHHHHHHHH
Confidence 579999999 56776 446777776554
No 31
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=40.01 E-value=44 Score=29.82 Aligned_cols=22 Identities=18% Similarity=0.004 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 048818 11 ERPLILGALLTFAVTAAFLITG 32 (284)
Q Consensus 11 ~r~w~~~l~~~~~~~~a~~~t~ 32 (284)
+|+|+++++++++..++.|+..
T Consensus 7 rRl~~~~~~~~~~~~a~~L~l~ 28 (160)
T PRK13165 7 KRLWLACAVLAGLALTIGLVLY 28 (160)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3678876666666555555433
No 32
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=39.89 E-value=17 Score=34.34 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=34.0
Q ss_pred ChhhhhcHHHHhccCCCCcEEEeccCchhhh-hhhc--CCCCceeEec-cChhHHHHH
Q 048818 74 TLPEIRVPFDALLGLAPCNLLVFGLGHDSLM-WASL--NPRGTTIFLE-EDSKLVHTI 127 (284)
Q Consensus 74 t~~Ei~~~~~vL~~raPCNfLVFGLg~dslm-W~aL--N~gGrTvFLE-Ed~~~i~~v 127 (284)
|.+==.+..+.|.++.+-++.|||.|.+.-. ..++ -...+.|++- -+++-.+.+
T Consensus 112 TaA~salaa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~ 169 (325)
T TIGR02371 112 TGAAGGVAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKF 169 (325)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHH
Confidence 3333345567788888999999999998763 1222 2467777763 344444433
No 33
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=39.86 E-value=11 Score=34.87 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=16.9
Q ss_pred ccCCChhhhcccccEEEEeCCCCCC
Q 048818 178 LNELPDDVYNREWDVIFIDGPRGYY 202 (284)
Q Consensus 178 L~~LP~evYe~eWDvImVDgP~Gy~ 202 (284)
++.|=.++.+-+.|+|+||+|.|-.
T Consensus 155 ~~qll~~~~~~~~D~vIID~PP~~g 179 (265)
T COG0489 155 MLQLLEDVLWGEYDYVIIDTPPGTG 179 (265)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCch
Confidence 3344445555556799999999753
No 34
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=39.42 E-value=16 Score=34.80 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=18.0
Q ss_pred cCCChhhhcccccEEEEeC-----CCCCC
Q 048818 179 NELPDDVYNREWDVIFIDG-----PRGYY 202 (284)
Q Consensus 179 ~~LP~evYe~eWDvImVDg-----P~Gy~ 202 (284)
+..|.|=.+..-||||||| |+|+.
T Consensus 105 ~~v~~erh~fr~dvilvDGnG~lHprGfG 133 (261)
T KOG4417|consen 105 KSVITERHEFRPDVILVDGNGELHPRGFG 133 (261)
T ss_pred HhcccccCCccccEEEEcCCceEcccccc
Confidence 4566666667789999998 77764
No 35
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=38.49 E-value=20 Score=34.96 Aligned_cols=79 Identities=27% Similarity=0.439 Sum_probs=48.5
Q ss_pred hhcccc---cEEEEeCCCCCCCCCCCchhh--HhhHHHHHHhhcCCCceeEEEecCChHHHHHHHHhhccccchhhccc-
Q 048818 185 VYNREW---DVIFIDGPRGYYAEAPGRMAT--IFTAAVMARARKSRGVTHVFLHDVDRKVEKAYAEEFLCRKYFVKVVG- 258 (284)
Q Consensus 185 vYe~eW---DvImVDgP~Gy~peaPGRM~a--IyTAavmAR~r~~gg~TdVfVHDvdR~VE~~~s~eFLC~~nlv~~~g- 258 (284)
+=+++| |.++||.|.|-..|==.=+.. +.+.||+-- ..-+|-+-||+|++. +|++.-+.-.|
T Consensus 149 lk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVT-----TPQ~vAl~Dv~K~i~-------fc~K~~I~ilGv 216 (300)
T KOG3022|consen 149 LKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVT-----TPQEVALQDVRKEID-------FCRKAGIPILGV 216 (300)
T ss_pred HhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEe-----CchhhhhHHHHhhhh-------hhhhcCCceEEE
Confidence 446788 999999999987652110000 002222211 135788899999998 78888777666
Q ss_pred --ceeeEEeC--CCCCCCCCC
Q 048818 259 --KLWHFRIP--PGAYAIPGK 275 (284)
Q Consensus 259 --rL~HF~Ip--~~~~~~~c~ 275 (284)
+.-+|+-| .+...-|-.
T Consensus 217 VENMs~f~Cp~C~~~~~iF~~ 237 (300)
T KOG3022|consen 217 VENMSGFVCPKCGHSTNIFGS 237 (300)
T ss_pred EeccccccCCCCCCcceeccC
Confidence 56677776 344444443
No 36
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=36.67 E-value=20 Score=33.76 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=17.7
Q ss_pred cccccEEEEeCC-CCC---CCCCCCchhhHhh
Q 048818 187 NREWDVIFIDGP-RGY---YAEAPGRMATIFT 214 (284)
Q Consensus 187 e~eWDvImVDgP-~Gy---~peaPGRM~aIyT 214 (284)
+-+||+|+||+| +|. .-+.|-+|....-
T Consensus 124 ~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~ 155 (305)
T PF02374_consen 124 SGEYDLIVVDTPPTGHTLRLLSLPERLRWWLD 155 (305)
T ss_dssp HCSTSEEEEESSSSHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEECCCCcHHHHHHHhHHHHHHHHHH
Confidence 579999999955 444 2345555544433
No 37
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=36.63 E-value=1.4e+02 Score=22.84 Aligned_cols=80 Identities=14% Similarity=0.185 Sum_probs=46.2
Q ss_pred hhhcHHHHhccCCCCcEEEeccCchhhhhhh----c-CCCCceeEeccChhHHHHHhhhCCCceeEEEeeecccccHHHH
Q 048818 77 EIRVPFDALLGLAPCNLLVFGLGHDSLMWAS----L-NPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHL 151 (284)
Q Consensus 77 Ei~~~~~vL~~raPCNfLVFGLg~dslmW~a----L-N~gGrTvFLEEd~~~i~~v~~~~p~leay~V~Y~T~~~ea~~L 151 (284)
+|..+++.|.+. .++++||-|+....... + ..|-...++.+...+........++--.--+...-.-.+.-++
T Consensus 2 ~i~~~~~~i~~~--~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~ 79 (139)
T cd05013 2 ALEKAVDLLAKA--RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEA 79 (139)
T ss_pred HHHHHHHHHHhC--CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHH
Confidence 466677777664 57999999986554432 2 2344555555554444444444455444445554444556666
Q ss_pred HHHcccC
Q 048818 152 MSSYRYE 158 (284)
Q Consensus 152 L~~~r~~ 158 (284)
++.+|+.
T Consensus 80 ~~~a~~~ 86 (139)
T cd05013 80 AEIAKER 86 (139)
T ss_pred HHHHHHc
Confidence 6666654
No 38
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.19 E-value=21 Score=31.52 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=11.9
Q ss_pred ccccEEEEeCCCCC
Q 048818 188 REWDVIFIDGPRGY 201 (284)
Q Consensus 188 ~eWDvImVDgP~Gy 201 (284)
-+||.|+||.|.+.
T Consensus 118 ~~yD~iiID~pp~l 131 (259)
T COG1192 118 DDYDYIIIDTPPSL 131 (259)
T ss_pred cCCCEEEECCCCch
Confidence 37999999999864
No 39
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=36.07 E-value=50 Score=26.90 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.0
Q ss_pred ccEEEEeCCCCCCC
Q 048818 190 WDVIFIDGPRGYYA 203 (284)
Q Consensus 190 WDvImVDgP~Gy~p 203 (284)
.|+|+||.|.|...
T Consensus 45 yd~VIiD~p~~~~~ 58 (139)
T cd02038 45 YDYIIIDTGAGISD 58 (139)
T ss_pred CCEEEEECCCCCCH
Confidence 89999999988754
No 40
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=34.88 E-value=8.3 Score=29.06 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=20.9
Q ss_pred ccccEEEEeCCCCC-CCCCCCchhhHhhHHHHHHhhc
Q 048818 188 REWDVIFIDGPRGY-YAEAPGRMATIFTAAVMARARK 223 (284)
Q Consensus 188 ~eWDvImVDgP~Gy-~peaPGRM~aIyTAavmAR~r~ 223 (284)
.|||.++|+.|... .++.-- --.||| |-|+|+
T Consensus 67 le~d~V~v~~~~~~~~~~~~~--~~lYva--~TRA~~ 99 (104)
T PF13538_consen 67 LEFDAVIVVDPDSSNFDELSR--RLLYVA--ITRAKH 99 (104)
T ss_dssp --EEEEEEEEGGGGSGCGCHH--HHHHHH--HTTEEE
T ss_pred ccccEEEEEcCCcccCCchhh--ccEEee--HhHhhh
Confidence 48999999998877 222222 339999 788763
No 41
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=34.12 E-value=24 Score=30.34 Aligned_cols=17 Identities=29% Similarity=0.603 Sum_probs=14.3
Q ss_pred ccccEEEEeCCCCCCCC
Q 048818 188 REWDVIFIDGPRGYYAE 204 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~pe 204 (284)
-..|+|+||+|.|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~~~ 123 (251)
T TIGR01969 107 DDTDFLLIDAPAGLERD 123 (251)
T ss_pred hhCCEEEEeCCCccCHH
Confidence 46899999999998653
No 42
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=34.03 E-value=41 Score=24.16 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=38.4
Q ss_pred EEEEeCCCCCCCCCCCchhhHhhHHHHHHhhcCCCceeEEEecCChH
Q 048818 192 VIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRK 238 (284)
Q Consensus 192 vImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~gg~TdVfVHDvdR~ 238 (284)
+|-|+-..|..+|-=-+++.-.|.++..-...+...+.|.++|+++.
T Consensus 3 ~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~ 49 (60)
T PRK02289 3 FVRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEG 49 (60)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChh
Confidence 46788888889999999999999988877755446799999999874
No 43
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=32.71 E-value=28 Score=27.28 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=10.9
Q ss_pred cEEEEeCCCCCC
Q 048818 191 DVIFIDGPRGYY 202 (284)
Q Consensus 191 DvImVDgP~Gy~ 202 (284)
|+|+||.|.|..
T Consensus 44 D~IIiDtpp~~~ 55 (106)
T cd03111 44 DYVVVDLGRSLD 55 (106)
T ss_pred CEEEEeCCCCcC
Confidence 999999999875
No 44
>PRK09379 membrane-bound transcriptional regulator LytR; Provisional
Probab=32.67 E-value=52 Score=31.39 Aligned_cols=29 Identities=31% Similarity=0.638 Sum_probs=23.5
Q ss_pred cCCCCcEEEeccC--------chhhhhhhcCCCCcee
Q 048818 87 GLAPCNLLVFGLG--------HDSLMWASLNPRGTTI 115 (284)
Q Consensus 87 ~raPCNfLVFGLg--------~dslmW~aLN~gGrTv 115 (284)
...|-|+|++|.- .|++|...+|+...++
T Consensus 57 ~~~~~niLllG~D~~~~~~~rsDtiml~~in~~~~~~ 93 (303)
T PRK09379 57 KKDPISILLMGVDERGGDKGRSDSLIVMTLNPKTNSM 93 (303)
T ss_pred CCCcEEEEEEEEeCCCCCCCCccEEEEEEEcCCCCeE
Confidence 4679999999974 4899999999966444
No 45
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=32.21 E-value=45 Score=32.51 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=27.7
Q ss_pred hhhhcCCCCceeEe------ccChhHHHHHhhhCCCce
Q 048818 104 MWASLNPRGTTIFL------EEDSKLVHTILARAPALR 135 (284)
Q Consensus 104 mW~aLN~gGrTvFL------EEd~~~i~~v~~~~p~le 135 (284)
.|..|++||+-||- |||+.-|+.+.++||+.+
T Consensus 354 a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 354 IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence 56779999998875 699999999999999864
No 46
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.85 E-value=60 Score=28.86 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 048818 11 ERPLILGALLTFAVTAAFLITG 32 (284)
Q Consensus 11 ~r~w~~~l~~~~~~~~a~~~t~ 32 (284)
+|+|++++.++++..++.|+.+
T Consensus 7 rRl~~v~~~~~~~~~a~~Lv~~ 28 (155)
T PRK13159 7 QRLWLVIGVLTAAALAVTLIVL 28 (155)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3778876555555555444433
No 47
>PF13479 AAA_24: AAA domain
Probab=31.65 E-value=57 Score=28.62 Aligned_cols=30 Identities=20% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCCcEEEe---ccCchhhhhhhcCCCCceeEeccChh
Q 048818 89 APCNLLVF---GLGHDSLMWASLNPRGTTIFLEEDSK 122 (284)
Q Consensus 89 aPCNfLVF---GLg~dslmW~aLN~gGrTvFLEEd~~ 122 (284)
-|-++||+ |.|.-++.... ++++||+=+..
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g 34 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTENG 34 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCC
Confidence 46789999 57888888777 99999995555
No 48
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=31.65 E-value=27 Score=28.51 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=13.1
Q ss_pred ccEEEEeCCCCCCCC
Q 048818 190 WDVIFIDGPRGYYAE 204 (284)
Q Consensus 190 WDvImVDgP~Gy~pe 204 (284)
-|+|+||+|.|....
T Consensus 95 yD~iiiD~~~~~~~~ 109 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP 109 (195)
T ss_dssp SSEEEEEECSSSSHH
T ss_pred ccceeecccccccHH
Confidence 899999999998654
No 49
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=31.52 E-value=29 Score=29.94 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=13.3
Q ss_pred ccccEEEEeCCCCCCC
Q 048818 188 REWDVIFIDGPRGYYA 203 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~p 203 (284)
-+.|+|+||+|.|...
T Consensus 110 ~~~D~viiD~p~~~~~ 125 (261)
T TIGR01968 110 EEFDYVIIDCPAGIES 125 (261)
T ss_pred HhCCEEEEeCCCCcCH
Confidence 3689999999998754
No 50
>PHA02518 ParA-like protein; Provisional
Probab=31.36 E-value=27 Score=29.18 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=11.8
Q ss_pred ccccEEEEeCCCCC
Q 048818 188 REWDVIFIDGPRGY 201 (284)
Q Consensus 188 ~eWDvImVDgP~Gy 201 (284)
-.+|+|+||.|.|.
T Consensus 75 ~~~d~viiD~p~~~ 88 (211)
T PHA02518 75 SGYDYVVVDGAPQD 88 (211)
T ss_pred ccCCEEEEeCCCCc
Confidence 35899999999875
No 51
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=31.13 E-value=19 Score=26.41 Aligned_cols=32 Identities=41% Similarity=0.771 Sum_probs=27.5
Q ss_pred cccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHh
Q 048818 187 NREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARA 221 (284)
Q Consensus 187 e~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~ 221 (284)
+-.|=.|-|+|| |...+.||.|+.|+++ ||.+
T Consensus 3 ~~~~~~i~v~g~-g~~~~~~Gv~a~i~~~--La~~ 34 (65)
T PF13840_consen 3 EEDWAKISVVGP-GLRFDVPGVAAKIFSA--LAEA 34 (65)
T ss_dssp ESEEEEEEEEEE-CGTTTSHHHHHHHHHH--HHHT
T ss_pred cCCEEEEEEEcc-ccCCCcccHHHHHHHH--HHHC
Confidence 457889999999 7777899999999988 8876
No 52
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=30.36 E-value=68 Score=28.66 Aligned_cols=38 Identities=29% Similarity=0.221 Sum_probs=20.3
Q ss_pred EEEecc-CchhhhhhhcCCCC-ceeEeccChhHHHHHhhhCCCceeEEEeeeccc
Q 048818 93 LLVFGL-GHDSLMWASLNPRG-TTIFLEEDSKLVHTILARAPALRVHTVTYRTHL 145 (284)
Q Consensus 93 fLVFGL-g~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~p~leay~V~Y~T~~ 145 (284)
+=|.|+ -.+|+.|. .+| ...|.=.|. -....|.|+--+
T Consensus 60 iRvgG~V~~GSv~r~---~~~~~v~F~vtD~------------~~~v~V~Y~Gil 99 (159)
T PRK13150 60 LRVGGMVMPGSVRRD---PDSLKVNFSLYDA------------EGSVTVSYEGIL 99 (159)
T ss_pred EEEeeEEeCCcEEEC---CCCcEEEEEEEcC------------CcEEEEEEeccC
Confidence 335666 56777663 333 345543442 124678887654
No 53
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=30.33 E-value=45 Score=32.52 Aligned_cols=36 Identities=14% Similarity=0.323 Sum_probs=26.7
Q ss_pred CCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEec
Q 048818 72 QLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLE 118 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLE 118 (284)
+-..++...+.+-|... .+-+.|-+.|..|++++++
T Consensus 139 k~~id~~~~ie~~l~~~-----------~~~i~WV~i~~~GT~l~I~ 174 (385)
T PF06898_consen 139 KFKIDSCEEIEKKLRKQ-----------FPDISWVGIEIKGTRLIIE 174 (385)
T ss_pred ecCCChHHHHHHHHHhh-----------CCCeEEEEEEEEeeEEEEE
Confidence 34444466666666653 4568999999999999998
No 54
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=30.23 E-value=69 Score=26.88 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=20.7
Q ss_pred CCchhhHhhHHHHHHhhcCCCceeEEEecCChH
Q 048818 206 PGRMATIFTAAVMARARKSRGVTHVFLHDVDRK 238 (284)
Q Consensus 206 PGRM~aIyTAavmAR~r~~gg~TdVfVHDvdR~ 238 (284)
+|++++|.++---+.. .+.-.||||++|++
T Consensus 78 ~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P 107 (190)
T TIGR03202 78 EGQAHSLKCGLRKAEA---MGADAVVILLADQP 107 (190)
T ss_pred hhHHHHHHHHHHHhcc---CCCCeEEEEeCCCC
Confidence 5899999987432221 12346999999986
No 55
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=28.89 E-value=1.1e+02 Score=27.67 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=32.4
Q ss_pred hhHHHHHHhhcCCCceeEEEecCC-----hHHH--HHHHHhhccccchhhcccceeeEEe
Q 048818 213 FTAAVMARARKSRGVTHVFLHDVD-----RKVE--KAYAEEFLCRKYFVKVVGKLWHFRI 265 (284)
Q Consensus 213 yTAavmAR~r~~gg~TdVfVHDvd-----R~VE--~~~s~eFLC~~nlv~~~grL~HF~I 265 (284)
|.+.+...+|+....+-+|+||++ ++.+ ..+-++.+=.+--+..+|-=+||..
T Consensus 104 ~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~ 163 (254)
T smart00633 104 YIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSL 163 (254)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecC
Confidence 444444444444568999999987 4444 3344444444445778887788853
No 56
>PRK13242 ureA urease subunit gamma; Provisional
Probab=28.40 E-value=34 Score=28.75 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.3
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+.-|
T Consensus 12 ~i~~a~~lA~~R~~rG 27 (100)
T PRK13242 12 VIHMLSDVALKRKNKG 27 (100)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4999999999998543
No 57
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=27.95 E-value=35 Score=28.27 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=12.8
Q ss_pred ccccEEEEeCCCCCC
Q 048818 188 REWDVIFIDGPRGYY 202 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~ 202 (284)
-+-|+|+||+|.|..
T Consensus 66 ~~yD~VIiD~pp~~~ 80 (169)
T cd02037 66 GELDYLVIDMPPGTG 80 (169)
T ss_pred CCCCEEEEeCCCCCc
Confidence 478999999999864
No 58
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=27.77 E-value=39 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.507 Sum_probs=18.8
Q ss_pred ccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHh
Q 048818 188 REWDVIFIDGPRGYYAEAPGRMATIFTAAVMARA 221 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~ 221 (284)
.+-|+|+||||.|.... |...++-+-+|+.
T Consensus 98 ~~~D~viid~~g~~~~~----~~~~~~~~dl~~~ 127 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVP----ITEEYTTADLIKL 127 (166)
T ss_pred hcCCEEEEEcCCccccC----CCCCCcHHHHHHH
Confidence 46799999999986542 2233334445554
No 59
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=26.59 E-value=1.9e+02 Score=26.13 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=44.3
Q ss_pred hhhhcHHHHhccCCCCcEEEe---ccCch-----hhhhhhcCC----CC-ceeEeccChhHHHHHhhhCCCceeEEEeee
Q 048818 76 PEIRVPFDALLGLAPCNLLVF---GLGHD-----SLMWASLNP----RG-TTIFLEEDSKLVHTILARAPALRVHTVTYR 142 (284)
Q Consensus 76 ~Ei~~~~~vL~~raPCNfLVF---GLg~d-----slmW~aLN~----gG-rTvFLEEd~~~i~~v~~~~p~leay~V~Y~ 142 (284)
.|++.++.+|++..+-.|+++ |-|-+ ++.|+-++. .| ++||..-+.+..+..+...+.++-|++.|.
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~ 175 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYL 175 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEE
Confidence 589999999988766666665 43433 556765543 35 455555555555434333456999999997
Q ss_pred cc
Q 048818 143 TH 144 (284)
Q Consensus 143 T~ 144 (284)
+.
T Consensus 176 ~~ 177 (222)
T cd03287 176 ES 177 (222)
T ss_pred Ee
Confidence 53
No 60
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=26.47 E-value=37 Score=28.27 Aligned_cols=16 Identities=63% Similarity=0.825 Sum_probs=13.1
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.|||.|+.-|
T Consensus 9 ~i~~a~~lA~~R~~rG 24 (96)
T cd00390 9 LIFTAAELARKRLARG 24 (96)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4999999999988433
No 61
>PRK13241 ureA urease subunit gamma; Provisional
Probab=25.84 E-value=39 Score=28.35 Aligned_cols=16 Identities=63% Similarity=0.918 Sum_probs=13.2
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+.-|
T Consensus 12 ~i~~a~~lA~~R~~rG 27 (100)
T PRK13241 12 LIFTAALLAERRKARG 27 (100)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4899999999998543
No 62
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=25.78 E-value=39 Score=29.10 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=11.7
Q ss_pred ccEEEEeCCCCCCC
Q 048818 190 WDVIFIDGPRGYYA 203 (284)
Q Consensus 190 WDvImVDgP~Gy~p 203 (284)
.|+|+||.|.|..+
T Consensus 115 ~D~viiD~pp~~~~ 128 (246)
T TIGR03371 115 RDWVLIDVPRGPSP 128 (246)
T ss_pred CCEEEEECCCCchH
Confidence 49999999998654
No 63
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=25.63 E-value=1.3e+02 Score=22.41 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=29.5
Q ss_pred cEEEeccCchhhh--hhhcCCCCceeEeccChhHHHHHhhhC
Q 048818 92 NLLVFGLGHDSLM--WASLNPRGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 92 NfLVFGLg~dslm--W~aLN~gGrTvFLEEd~~~i~~v~~~~ 131 (284)
++|-.|-|.-... ++...+|.+-+=+|-||..++..+++.
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4677766555544 444448999999999999999888665
No 64
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=25.59 E-value=46 Score=27.03 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=19.9
Q ss_pred ccccccc----cCCChhhhcccccEEEEeCCCCCC
Q 048818 172 TRCKLVL----NELPDDVYNREWDVIFIDGPRGYY 202 (284)
Q Consensus 172 S~CkLAL----~~LP~evYe~eWDvImVDgP~Gy~ 202 (284)
..|-.+- +.+=+++-....|.++||.|.|.-
T Consensus 65 ~g~~~~~n~~~~~~l~~~~~~~~~~vivDt~ag~e 99 (116)
T cd02034 65 EGCYCPENALLNALLRHLVLTRDEQVVVDTEAGLE 99 (116)
T ss_pred CCCEehhhHHHHHHHHHeEccCCCEEEEecHHHHH
Confidence 4444444 344444445678999999998763
No 65
>PRK11670 antiporter inner membrane protein; Provisional
Probab=25.42 E-value=44 Score=32.45 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCcEEEe-----ccCchhh---hhhhc-CCCCceeEeccChhH
Q 048818 90 PCNLLVF-----GLGHDSL---MWASL-NPRGTTIFLEEDSKL 123 (284)
Q Consensus 90 PCNfLVF-----GLg~dsl---mW~aL-N~gGrTvFLEEd~~~ 123 (284)
.++.+.+ |.|.-+. +-.+| ..|=|++.+|-|+.-
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qg 148 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYG 148 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5677766 5666543 23344 345588899988765
No 66
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=25.02 E-value=46 Score=26.87 Aligned_cols=12 Identities=50% Similarity=0.803 Sum_probs=10.7
Q ss_pred cEEEEeCCCCCC
Q 048818 191 DVIFIDGPRGYY 202 (284)
Q Consensus 191 DvImVDgP~Gy~ 202 (284)
|+|+||+|.|..
T Consensus 64 d~viiD~p~~~~ 75 (179)
T cd02036 64 DYILIDSPAGIE 75 (179)
T ss_pred CEEEEECCCCCc
Confidence 999999998864
No 67
>PRK12470 amidase; Provisional
Probab=24.82 E-value=1.3e+02 Score=29.84 Aligned_cols=93 Identities=17% Similarity=0.122 Sum_probs=53.9
Q ss_pred ccChhHHHHHhhhCCCceeEEEe-eecccccHHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEe
Q 048818 118 EEDSKLVHTILARAPALRVHTVT-YRTHLYEADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFID 196 (284)
Q Consensus 118 EEd~~~i~~v~~~~p~leay~V~-Y~T~~~ea~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVD 196 (284)
|--+.+++++++..|.+.++... .+..+.+|.++=+..+..... | ...-++++||+ |+++ +
T Consensus 27 e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-p-------L~GvPi~vKD~----~~v~------G 88 (462)
T PRK12470 27 MLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-P-------LLGVPIAIKDD----VDVA------G 88 (462)
T ss_pred HHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-C-------cCCCeEEEecC----cccC------C
Confidence 33456788888888888888544 334445555544333322221 2 33455666653 3332 4
Q ss_pred CCCCCCCCCCCchhhHhhHHHHHHhhcCC----Ccee
Q 048818 197 GPRGYYAEAPGRMATIFTAAVMARARKSR----GVTH 229 (284)
Q Consensus 197 gP~Gy~peaPGRM~aIyTAavmAR~r~~g----g~Td 229 (284)
=|+.+.-...+++. -+.|.+.+|=|+.| |+|.
T Consensus 89 ~~tt~Gs~~~~~~~-~~dA~vV~rLr~aGaii~GKTn 124 (462)
T PRK12470 89 EVTTYGSAGHGPAA-TSDAEVVRRLRAAGAVIIGKTN 124 (462)
T ss_pred ceeCCCCcccCCCC-CccHHHHHHHHHCCCeEEEEeC
Confidence 45555433344543 48999999999987 6664
No 68
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=24.20 E-value=97 Score=30.46 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhccccccCcccccCCCCCCcHHHHHHHHHHhhc-CCCC---CCChhhhhcHHHHhcc
Q 048818 12 RPLILGALLTFAVTAAFLITGLSRTMKASIPRIYAIDSTPAAMQTQLLAIIHYATS-RDIP---QLTLPEIRVPFDALLG 87 (284)
Q Consensus 12 r~w~~~l~~~~~~~~a~~~t~~~~t~~~s~~~~~~~~~~~~~~~~~~~AlvHYAts-n~tp---qqt~~Ei~~~~~vL~~ 87 (284)
|.+.+++-++.|+.+.+++++|+-.=+.+.... .++ +.|+.++.. .+-| +-+. +...+.+-|..
T Consensus 83 kRk~~~~G~~~f~~ll~~lS~fIW~IeI~Gn~~--------~t~---~~i~~~L~e~Gi~~G~~k~~i-d~~~ie~~l~~ 150 (382)
T TIGR02876 83 KRPGILIGILLFLAIVYFLSNFIWKIDITGVKG--------ETP---YEIRKQLKEMGIKPGVWKFSV-DVYKLERKLLD 150 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhheEEEEEEECCCC--------CCH---HHHHHHHHHcCCCcCeeeCCC-CHHHHHHHHHh
Confidence 334433455566666677766665433222111 122 233444443 2333 2222 33444455554
Q ss_pred CCCCcEEEeccCchhhhhhhcCCCCceeEec
Q 048818 88 LAPCNLLVFGLGHDSLMWASLNPRGTTIFLE 118 (284)
Q Consensus 88 raPCNfLVFGLg~dslmW~aLN~gGrTvFLE 118 (284)
..+-++|.+.|-.|++++++
T Consensus 151 -----------~~~~i~WV~v~i~GTrl~i~ 170 (382)
T TIGR02876 151 -----------RVPEIMWAGVRVRGTTLVIK 170 (382)
T ss_pred -----------hCCCcEEEEEEEEeEEEEEE
Confidence 35689999999999999998
No 69
>PRK10037 cell division protein; Provisional
Probab=24.12 E-value=48 Score=29.46 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.6
Q ss_pred ccccEEEEeCCCCCC
Q 048818 188 REWDVIFIDGPRGYY 202 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~ 202 (284)
.+.|+|+||.|.|..
T Consensus 116 ~~yD~iiIDtpp~~~ 130 (250)
T PRK10037 116 GRYQWILLDLPRGAS 130 (250)
T ss_pred CCCCEEEEECCCCcc
Confidence 468999999999853
No 70
>COG0831 UreA Urea amidohydrolase (urease) gamma subunit [Amino acid transport and metabolism]
Probab=24.06 E-value=46 Score=27.92 Aligned_cols=16 Identities=69% Similarity=0.931 Sum_probs=13.1
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+..|
T Consensus 12 li~~a~~lA~rR~~RG 27 (100)
T COG0831 12 LIFTAAELARRRKARG 27 (100)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4899999999998443
No 71
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=23.95 E-value=1.9e+02 Score=25.51 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=47.6
Q ss_pred HhhcCCCCCCChhhhhcHHHHhccCC-CCcEEEeccCchhhh--hhhcCCCCceeEeccChhHHHHHhhhCCCce
Q 048818 64 YATSRDIPQLTLPEIRVPFDALLGLA-PCNLLVFGLGHDSLM--WASLNPRGTTIFLEEDSKLVHTILARAPALR 135 (284)
Q Consensus 64 YAtsn~tpqqt~~Ei~~~~~vL~~ra-PCNfLVFGLg~dslm--W~aLN~gGrTvFLEEd~~~i~~v~~~~p~le 135 (284)
|.-.|.+.+.-.+++..+.++|.+.. +-.+|=+|=|....+ ++...+++.-+=+|-++..++..+++.|+++
T Consensus 17 ~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~ 91 (204)
T TIGR03587 17 YIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNIN 91 (204)
T ss_pred hhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCc
Confidence 33344433334557777888887755 567999987766543 3333346677778889999999988766543
No 72
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=23.95 E-value=46 Score=32.61 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=26.9
Q ss_pred hhhhcCCCCcee------EeccChhHHHHHhhhCCCce
Q 048818 104 MWASLNPRGTTI------FLEEDSKLVHTILARAPALR 135 (284)
Q Consensus 104 mW~aLN~gGrTv------FLEEd~~~i~~v~~~~p~le 135 (284)
.|..+++||+-| +-||++.=|.++.++||+.+
T Consensus 370 a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 370 LAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred HHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 477889999854 55699999999999999875
No 73
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=23.94 E-value=52 Score=32.17 Aligned_cols=34 Identities=32% Similarity=0.701 Sum_probs=27.6
Q ss_pred hhhhcCCCCceeE------eccChhHHHHHhhhCCCceeE
Q 048818 104 MWASLNPRGTTIF------LEEDSKLVHTILARAPALRVH 137 (284)
Q Consensus 104 mW~aLN~gGrTvF------LEEd~~~i~~v~~~~p~leay 137 (284)
.|..|++||+-|| .+|++.-|..+.+++|+.+.-
T Consensus 358 a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 358 LWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELL 397 (427)
T ss_pred HHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEe
Confidence 4567999999664 579999999999999987653
No 74
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=23.93 E-value=2.7e+02 Score=27.19 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=38.3
Q ss_pred cccEEEEeCCCCCCC--CCCCchhh--------HhhHHH--HHHhhcCCCceeEEEecCChHHHHHH-HHhhccccchhh
Q 048818 189 EWDVIFIDGPRGYYA--EAPGRMAT--------IFTAAV--MARARKSRGVTHVFLHDVDRKVEKAY-AEEFLCRKYFVK 255 (284)
Q Consensus 189 eWDvImVDgP~Gy~p--eaPGRM~a--------IyTAav--mAR~r~~gg~TdVfVHDvdR~VE~~~-s~eFLC~~nlv~ 255 (284)
.=|+|+||.=.+.+| |--|+|+. ..+.++ |...-+..+.|=||.-.+.-.+...| ..|.-+.++..+
T Consensus 133 ~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~ 212 (325)
T cd00983 133 AVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALK 212 (325)
T ss_pred CCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccccccCCCccCCCchHHh
Confidence 448999999888876 44566621 112211 11111123678888776666665556 455666666554
No 75
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=23.92 E-value=46 Score=28.06 Aligned_cols=16 Identities=44% Similarity=0.752 Sum_probs=13.1
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+.-|
T Consensus 12 ~i~~a~~lA~rR~~rG 27 (102)
T TIGR00193 12 MLFYAGELAKKRKARG 27 (102)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4999999999988543
No 76
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.65 E-value=48 Score=29.63 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=12.3
Q ss_pred cccccEEEEeCCCCC
Q 048818 187 NREWDVIFIDGPRGY 201 (284)
Q Consensus 187 e~eWDvImVDgP~Gy 201 (284)
..+.|+|+||.|.+.
T Consensus 210 ~~~yD~ViiD~pp~~ 224 (274)
T TIGR03029 210 MGDYDVVIVDTPSAE 224 (274)
T ss_pred HhcCCEEEEeCCCcc
Confidence 446899999999864
No 77
>COG5125 Uncharacterized conserved protein [Function unknown]
Probab=23.61 E-value=43 Score=31.82 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=58.5
Q ss_pred cCCCCCC----ChhhhhcHHHHhccCCCCcEEEeccCchh-------hhhhhcCCCCceeEeccChhHHHHHhhh-CCCc
Q 048818 67 SRDIPQL----TLPEIRVPFDALLGLAPCNLLVFGLGHDS-------LMWASLNPRGTTIFLEEDSKLVHTILAR-APAL 134 (284)
Q Consensus 67 sn~tpqq----t~~Ei~~~~~vL~~raPCNfLVFGLg~ds-------lmW~aLN~gGrTvFLEEd~~~i~~v~~~-~p~l 134 (284)
.|+|.|- +.+-++-+++.|+...|-||+=|=.-++| |.+-|+=-----.|||+|++-+-.+..+ .-+.
T Consensus 151 ~NiT~QE~~~e~~K~~~~iSrlL~~~g~~N~fKFIidP~Sfs~tiENLFY~SFL~KEGKa~le~dE~G~l~i~~~~s~~~ 230 (259)
T COG5125 151 TNITRQEDSVEEPKILAQISRLLAEKGRTNYFKFIIDPRSFSKTIENLFYLSFLLKEGKAFLEFDEDGTLYVVSEGSEGA 230 (259)
T ss_pred cccccccCCcchhhHHHHHHHHhcccCCcceeEEecCcchhhHHHHHHHHHHHHHhcChhheeecCCCcEEEEeeeeecc
Confidence 3555443 34557789999999999999999888876 4444443333347899998876554422 1112
Q ss_pred eeEEEeeecccccHHHHHHHcc
Q 048818 135 RVHTVTYRTHLYEADHLMSSYR 156 (284)
Q Consensus 135 eay~V~Y~T~~~ea~~LL~~~r 156 (284)
-.-|+-++....+..+|++.+.
T Consensus 231 s~~h~i~~m~~~~~~~~i~~~~ 252 (259)
T COG5125 231 STGHLVVEMTYDEYLRIVERMG 252 (259)
T ss_pred ccccEEEEeccHHHHHHHHHhC
Confidence 2226666777777888887654
No 78
>PF04250 DUF429: Protein of unknown function (DUF429); InterPro: IPR007362 This is a family of uncharacterised proteins.
Probab=23.45 E-value=62 Score=28.18 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.4
Q ss_pred cccEEEEeCCCCCCCCCCCc
Q 048818 189 EWDVIFIDGPRGYYAEAPGR 208 (284)
Q Consensus 189 eWDvImVDgP~Gy~peaPGR 208 (284)
+ ++|.||+|=|+.++..+|
T Consensus 41 ~-~~v~IDaPlgl~~~~~~R 59 (209)
T PF04250_consen 41 P-AVVGIDAPLGLPNESGRR 59 (209)
T ss_pred C-cEEEEEcCcccCCCCCCc
Confidence 5 899999999995565555
No 79
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=23.23 E-value=4.6e+02 Score=22.11 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=42.3
Q ss_pred CChhhhhcHHHHhcc-CCCCcEEEeccCchhhh-------hhhcCCCCceeEeccC--hhHHHHHhhhC--CCceeEEEe
Q 048818 73 LTLPEIRVPFDALLG-LAPCNLLVFGLGHDSLM-------WASLNPRGTTIFLEED--SKLVHTILARA--PALRVHTVT 140 (284)
Q Consensus 73 qt~~Ei~~~~~vL~~-raPCNfLVFGLg~dslm-------W~aLN~gGrTvFLEEd--~~~i~~v~~~~--p~leay~V~ 140 (284)
+..++|....+-+++ +.-=|++++|.|-.++. ...+...|..+|...+ +..+.++.+.. .+.-.--+.
T Consensus 2 ~~~~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iS 81 (158)
T cd05015 2 AELERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVIS 81 (158)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEE
Confidence 345667777777765 34557888899987772 2233445778777666 55556666543 334444555
Q ss_pred ee
Q 048818 141 YR 142 (284)
Q Consensus 141 Y~ 142 (284)
+.
T Consensus 82 kS 83 (158)
T cd05015 82 KS 83 (158)
T ss_pred CC
Confidence 54
No 80
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=23.13 E-value=51 Score=23.93 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q 048818 11 ERPLILGALLTFAVTAA 27 (284)
Q Consensus 11 ~r~w~~~l~~~~~~~~a 27 (284)
.+.+|| |+|+|+|++.
T Consensus 4 KKsllL-lfflG~ISlS 19 (46)
T PF03032_consen 4 KKSLLL-LFFLGTISLS 19 (46)
T ss_pred hHHHHH-HHHHHHcccc
Confidence 344444 7888887654
No 81
>PHA02913 TGF-beta-like protein; Provisional
Probab=22.94 E-value=43 Score=30.32 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=14.4
Q ss_pred hh-hcccccEEEEeCCCCCCC
Q 048818 184 DV-YNREWDVIFIDGPRGYYA 203 (284)
Q Consensus 184 ev-Ye~eWDvImVDgP~Gy~p 203 (284)
.+ =|+.||+|+ +|+||.+
T Consensus 85 DF~~dIGWdWII--APkgY~A 103 (172)
T PHA02913 85 DFKADMGMKWIL--KPEGTHA 103 (172)
T ss_pred chhhccCcceEe--cCCCeee
Confidence 45 588999887 9999954
No 82
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=22.75 E-value=64 Score=30.24 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=30.9
Q ss_pred hhHHHHHhhhCCCceeEEEeeecccccHHHHHHH
Q 048818 121 SKLVHTILARAPALRVHTVTYRTHLYEADHLMSS 154 (284)
Q Consensus 121 ~~~i~~v~~~~p~leay~V~Y~T~~~ea~~LL~~ 154 (284)
..||+.|++-|-.=-.+.|.|+..+-+-+.||+.
T Consensus 119 d~WI~~i~elHr~kp~~tV~Y~~~mPdId~LMqe 152 (214)
T PF12317_consen 119 DKWIESIEELHRSKPPPTVHYSKPMPDIDTLMQE 152 (214)
T ss_pred HHHHHHHHHHHhcCCCCceecCCCCCCHHHHHHH
Confidence 5799999999988889999999999999999973
No 83
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=22.69 E-value=74 Score=27.55 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=23.9
Q ss_pred ChhhhhcHHHHhccCCCCcEEEeccCchh
Q 048818 74 TLPEIRVPFDALLGLAPCNLLVFGLGHDS 102 (284)
Q Consensus 74 t~~Ei~~~~~vL~~raPCNfLVFGLg~ds 102 (284)
...+.....++|++..+|.+.|+|+|.|.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Dl~llGiG~dg 128 (232)
T cd01399 100 LEAECRRYEALIAEAGGIDLQLLGIGENG 128 (232)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCc
Confidence 34566777888888789999999999975
No 84
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=22.39 E-value=39 Score=31.17 Aligned_cols=124 Identities=23% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCCCcEEEeccCchhhhhhhcCC--CCceeEecc--ChhHHH----HHhhhCCCc--------eeEEEeeecccccHHHH
Q 048818 88 LAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEE--DSKLVH----TILARAPAL--------RVHTVTYRTHLYEADHL 151 (284)
Q Consensus 88 raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEE--d~~~i~----~v~~~~p~l--------eay~V~Y~T~~~ea~~L 151 (284)
.+||-|-|||-| ||||+--=+ +.++-|+.- -..|+. .=....|++ ..-=|.|+-.-.++++-
T Consensus 7 ~~~~~~WVFgYG--SLmW~P~f~~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~~GGsc~GvafRip~~~~~~v 84 (190)
T COG3703 7 ADPDELWVFGYG--SLMWNPGFEFTEVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLDRGGSCEGVAYRIPEAHAEEV 84 (190)
T ss_pred cCCCCeEEEEec--ceeecCCccccceeEEEEecceeEEEEEEeeecCCcCCCceEEEeeCCCcEEEEEEEcCchhhHHH
Confidence 468889999987 999964333 345555541 011111 112456665 34568899888888888
Q ss_pred HHHcccCCCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc
Q 048818 152 MSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK 223 (284)
Q Consensus 152 L~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~ 223 (284)
++.+++-+---.... + ---|++.+-+ =...==+..|+-++ .|+-+|++..==+|+++|++.-
T Consensus 85 ~~yL~~RE~~~t~~y-~--p~~l~v~~~~-----g~~~~al~~v~~~~--h~qyag~l~~~~~A~~ia~a~G 146 (190)
T COG3703 85 LEYLREREMNYTLVY-V--PRWLPVELEG-----GRRVNALVFVGDRK--HPQYAGDLDAEQIAAIIAAAVG 146 (190)
T ss_pred HHHHHHhhcccccee-e--eEEEEEecCC-----CcEEEEEEEEecCC--ccccCCCCcHHHHHHHHHHHhC
Confidence 887765432111000 0 0011111111 00001134444444 5888899999889999999863
No 85
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.01 E-value=63 Score=22.62 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=11.4
Q ss_pred cEEEEeCCCCCCC
Q 048818 191 DVIFIDGPRGYYA 203 (284)
Q Consensus 191 DvImVDgP~Gy~p 203 (284)
|+|+||+|.+...
T Consensus 35 d~iivD~~~~~~~ 47 (99)
T cd01983 35 DYVLIDTPPGLGL 47 (99)
T ss_pred CEEEEeCCCCccc
Confidence 9999999988754
No 86
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=21.92 E-value=2.2e+02 Score=21.28 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=34.3
Q ss_pred CChhhhhc-HHHHhccCCCCcEEEeccCchhhhhhhcC--CCCceeEeccChhHHHHHhh
Q 048818 73 LTLPEIRV-PFDALLGLAPCNLLVFGLGHDSLMWASLN--PRGTTIFLEEDSKLVHTILA 129 (284)
Q Consensus 73 qt~~Ei~~-~~~vL~~raPCNfLVFGLg~dslmW~aLN--~gGrTvFLEEd~~~i~~v~~ 129 (284)
|+..|+.. +.+.+.-...-++|-+|-|.-...+...+ ++++-+-+|-++..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 61 (124)
T TIGR02469 2 MTKREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER 61 (124)
T ss_pred CchHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence 34455443 33333222234789998888777665554 35677777877777766654
No 87
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=21.88 E-value=70 Score=27.60 Aligned_cols=16 Identities=19% Similarity=0.769 Sum_probs=13.2
Q ss_pred cccccEEEEeCCCCCC
Q 048818 187 NREWDVIFIDGPRGYY 202 (284)
Q Consensus 187 e~eWDvImVDgP~Gy~ 202 (284)
..+-|+|+||||.|.+
T Consensus 101 ~~~~D~viIEg~gg~~ 116 (222)
T PRK00090 101 AQQYDLVLVEGAGGLL 116 (222)
T ss_pred HhhCCEEEEECCCcee
Confidence 3467999999999875
No 88
>COG1278 CspC Cold shock proteins [Transcription]
Probab=21.73 E-value=52 Score=25.62 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=8.2
Q ss_pred CCceeEEEec
Q 048818 225 RGVTHVFLHD 234 (284)
Q Consensus 225 gg~TdVfVHD 234 (284)
.|.-|||||.
T Consensus 22 ~G~~DvFVH~ 31 (67)
T COG1278 22 DGGKDVFVHI 31 (67)
T ss_pred CCCcCEEEEe
Confidence 4678999995
No 89
>PF00547 Urease_gamma: Urease, gamma subunit enzyme!; InterPro: IPR002026 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plantseeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta IPR002019 from INTERPRO and gamma, described in this entry). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3QGA_G 3QGK_M 1E9Y_A 1E9Z_A 1FWF_A 1A5L_A 1EJW_A 1EJR_A 1FWH_A 1EJS_A ....
Probab=21.70 E-value=52 Score=27.60 Aligned_cols=16 Identities=50% Similarity=0.702 Sum_probs=13.1
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+.-|
T Consensus 12 ~i~~a~~lA~~R~~rG 27 (99)
T PF00547_consen 12 LIFQAAELAQRRLARG 27 (99)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4899999999998443
No 90
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=21.51 E-value=2.2e+02 Score=26.62 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=28.8
Q ss_pred CCCcEEEe--ccCchhhhhhhcCCCCceeEeccChhHHHHHhhhC
Q 048818 89 APCNLLVF--GLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 89 aPCNfLVF--GLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~ 131 (284)
.+-.+|=. |-|.-++.++. +|++.+-+|-++..++..+++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSA 215 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHH
Confidence 35566666 55555555554 6778899999999998877653
No 91
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=21.43 E-value=45 Score=31.10 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=15.6
Q ss_pred ccccCCCh-----hhhcccccEEEEeCC
Q 048818 176 LVLNELPD-----DVYNREWDVIFIDGP 198 (284)
Q Consensus 176 LAL~~LP~-----evYe~eWDvImVDgP 198 (284)
||.|.+|. +--..+-|||||||=
T Consensus 77 LaFRE~p~~l~a~~~l~~~~d~ilVDG~ 104 (212)
T COG1515 77 LAFRELPLLLKALEKLSVKPDLLLVDGH 104 (212)
T ss_pred hhhhhhHHHHHHHHhcCCCCCEEEEcCc
Confidence 56666762 233458999999974
No 92
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.24 E-value=2.9e+02 Score=21.24 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=47.3
Q ss_pred hhHHHHHhhhCCCceeEEEeeecccccHHHHHHHcccC-CCCCCC-ccCCCCcccccccccCCChhhhc--ccccEEEE
Q 048818 121 SKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYE-KYCLPP-HVHLKGNTRCKLVLNELPDDVYN--REWDVIFI 195 (284)
Q Consensus 121 ~~~i~~v~~~~p~leay~V~Y~T~~~ea~~LL~~~r~~-~~C~p~-~~~lr~~S~CkLAL~~LP~evYe--~eWDvImV 195 (284)
+++++.+++..|++=...+.|.....++.++.+.+|+. |.+.=+ .+.. .+-.|.++.+ ..+|.+++
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~---------~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH---------ATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS---------SGHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc---------hhcChHHHhccCcCcceecC
Confidence 77888999999999999999999999999999987764 333221 1100 1245777665 56688775
No 93
>CHL00175 minD septum-site determining protein; Validated
Probab=21.23 E-value=57 Score=29.27 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=12.3
Q ss_pred cccEEEEeCCCCCC
Q 048818 189 EWDVIFIDGPRGYY 202 (284)
Q Consensus 189 eWDvImVDgP~Gy~ 202 (284)
+.|+|+||.|.|..
T Consensus 126 ~yD~VIiDtpp~~~ 139 (281)
T CHL00175 126 GYDYILIDCPAGID 139 (281)
T ss_pred CCCEEEEeCCCCCC
Confidence 68999999999864
No 94
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=21.13 E-value=2e+02 Score=23.26 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=31.1
Q ss_pred CCcEEEe--ccCchhhhhh-hcCCCCceeEeccChhHHHHHhh
Q 048818 90 PCNLLVF--GLGHDSLMWA-SLNPRGTTIFLEEDSKLVHTILA 129 (284)
Q Consensus 90 PCNfLVF--GLg~dslmW~-aLN~gGrTvFLEEd~~~i~~v~~ 129 (284)
..++|=+ |-|+.+..++ .+++++..+-+|=++..|+.+++
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~ 46 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK 46 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc
Confidence 4555555 5567788888 67889999999999999888776
No 95
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=21.03 E-value=48 Score=26.67 Aligned_cols=19 Identities=42% Similarity=0.816 Sum_probs=14.6
Q ss_pred hhhhcccc-cEEEEeCCCCCCC
Q 048818 183 DDVYNREW-DVIFIDGPRGYYA 203 (284)
Q Consensus 183 ~evYe~eW-DvImVDgP~Gy~p 203 (284)
=.+=|+.| |.|+ +|+||.+
T Consensus 8 VdF~~iGW~~wIi--aP~~y~a 27 (102)
T smart00204 8 VDFKDLGWDDWII--APKGYNA 27 (102)
T ss_pred EEHhhcCCcceEE--cCCceee
Confidence 34558899 7887 8999964
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=20.89 E-value=2.3e+02 Score=24.16 Aligned_cols=60 Identities=27% Similarity=0.326 Sum_probs=44.2
Q ss_pred CCChhhhhc-HHHHhccCCCCcEEEeccCchhh--hhhhcCCCCceeEeccChhHHHHHhhhC
Q 048818 72 QLTLPEIRV-PFDALLGLAPCNLLVFGLGHDSL--MWASLNPRGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 72 qqt~~Ei~~-~~~vL~~raPCNfLVFGLg~dsl--mW~aLN~gGrTvFLEEd~~~i~~v~~~~ 131 (284)
.+|..|++. +.+.|.-...-.+|=+|=|.-.+ .++..+++++-+-+|-|++.++..+++.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~ 84 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNC 84 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 488999996 57777545556788887765543 4555677888889999999998887654
No 97
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.83 E-value=2e+02 Score=28.14 Aligned_cols=88 Identities=17% Similarity=0.322 Sum_probs=64.8
Q ss_pred CCCCCChhhhhcHHHHhcc-CCCCcEEEe------ccCchhh--hhhhcCCCCceeEeccChhHHHHHhhhCCCc-----
Q 048818 69 DIPQLTLPEIRVPFDALLG-LAPCNLLVF------GLGHDSL--MWASLNPRGTTIFLEEDSKLVHTILARAPAL----- 134 (284)
Q Consensus 69 ~tpqqt~~Ei~~~~~vL~~-raPCNfLVF------GLg~dsl--mW~aLN~gGrTvFLEEd~~~i~~v~~~~p~l----- 134 (284)
..|..|.+|+....+.+++ +.++.++|+ |++.|.. +-+.+|..|..|.||-+.....++.+..|.+
T Consensus 107 ~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~ 186 (310)
T COG1105 107 PGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNR 186 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCH
Confidence 4478999999999999999 889999999 5777754 5567788899999999999988888776754
Q ss_pred eeEEEeeecccccHHHHHHHcc
Q 048818 135 RVHTVTYRTHLYEADHLMSSYR 156 (284)
Q Consensus 135 eay~V~Y~T~~~ea~~LL~~~r 156 (284)
+=-..-+.+++.+-.+.++.++
T Consensus 187 ~EL~~~~g~~~~~~~d~i~~a~ 208 (310)
T COG1105 187 EELEALFGRELTTLEDVIKAAR 208 (310)
T ss_pred HHHHHHhCCCCCChHHHHHHHH
Confidence 2222234455555555555444
No 98
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=20.83 E-value=58 Score=28.15 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=32.0
Q ss_pred CChhhhhcHHHHhccCC-------CCcEEEe-----ccCchh----hhhhhc-CCCCceeEeccChhH
Q 048818 73 LTLPEIRVPFDALLGLA-------PCNLLVF-----GLGHDS----LMWASL-NPRGTTIFLEEDSKL 123 (284)
Q Consensus 73 qt~~Ei~~~~~vL~~ra-------PCNfLVF-----GLg~ds----lmW~aL-N~gGrTvFLEEd~~~ 123 (284)
-..+|++.+.+.|..++ ..+.+.| |-|.-+ +-|+.- ++|-|++.+|-|+.-
T Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 10 RIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 35666777777666433 4665655 556665 334332 467889999988754
No 99
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=20.69 E-value=88 Score=30.92 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=28.2
Q ss_pred hhhhcCCCCceeE------eccChhHHHHHhhhCCCcee
Q 048818 104 MWASLNPRGTTIF------LEEDSKLVHTILARAPALRV 136 (284)
Q Consensus 104 mW~aLN~gGrTvF------LEEd~~~i~~v~~~~p~lea 136 (284)
.|..+++||+-|| -||+++-|+++.++||+.+.
T Consensus 352 a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 352 AWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred HHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEE
Confidence 5778899999766 57999999999999998764
No 100
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=20.67 E-value=1.3e+02 Score=21.51 Aligned_cols=19 Identities=21% Similarity=0.034 Sum_probs=10.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 048818 10 VERPLILGALLTFAVTAAFLITG 32 (284)
Q Consensus 10 ~~r~w~~~l~~~~~~~~a~~~t~ 32 (284)
.||-|++ .+++.++.|+.+
T Consensus 12 YEr~Wi~----F~l~mi~vFi~l 30 (38)
T PF09125_consen 12 YERGWIA----FALAMILVFIAL 30 (38)
T ss_dssp HHHHHHH----HHHHHHHHHHHH
T ss_pred HHHhHHH----HHHHHHHHHHHH
Confidence 4899993 344444444433
No 101
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.51 E-value=1.1e+02 Score=32.89 Aligned_cols=38 Identities=32% Similarity=0.403 Sum_probs=26.3
Q ss_pred ccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhcCCCceeEEEecCChH
Q 048818 188 REWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARKSRGVTHVFLHDVDRK 238 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~gg~TdVfVHDvdR~ 238 (284)
.+||||+|-|.- +++=-|...||- |-.|.+++|..|--
T Consensus 3 ~~~DVIVIGgGH----------AG~EAA~AaARm---G~ktlLlT~~~dti 40 (621)
T COG0445 3 KEYDVIVIGGGH----------AGVEAALAAARM---GAKTLLLTLNLDTI 40 (621)
T ss_pred CCCceEEECCCc----------cchHHHHhhhcc---CCeEEEEEcCCCce
Confidence 359999998865 344334444443 56899999998854
No 102
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=20.47 E-value=58 Score=31.88 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=33.6
Q ss_pred CChhhhhcHHHHhcc-------------CC---CCcEEEe-----ccCchhhh---hhhcC-CCCceeEeccChh
Q 048818 73 LTLPEIRVPFDALLG-------------LA---PCNLLVF-----GLGHDSLM---WASLN-PRGTTIFLEEDSK 122 (284)
Q Consensus 73 qt~~Ei~~~~~vL~~-------------ra---PCNfLVF-----GLg~dslm---W~aLN-~gGrTvFLEEd~~ 122 (284)
-|.+||..+.+++.. |. ++..+.| |.|.-+.- -.+|. .|-|++.+|-||.
T Consensus 87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 788999999999962 22 4566665 66766521 11333 4568999999986
No 103
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=20.24 E-value=5e+02 Score=22.67 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=26.8
Q ss_pred hhcHHHHhccCCCCcEEEeccCc--hhhhhhhcCCCCceeEecc
Q 048818 78 IRVPFDALLGLAPCNLLVFGLGH--DSLMWASLNPRGTTIFLEE 119 (284)
Q Consensus 78 i~~~~~vL~~raPCNfLVFGLg~--dslmW~aLN~gGrTvFLEE 119 (284)
++.+........=-+.||.|.|. ..++=+.|...|-+|.+-.
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~ 75 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCH 75 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEE
Confidence 33333333334457899999996 6667788877775665443
Done!