Query 048818
Match_columns 284
No_of_seqs 92 out of 94
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 00:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cvo_A Methyltransferase-like 96.5 0.003 1E-07 55.0 5.4 164 71-268 14-185 (202)
2 3c6k_A Spermine synthase; sper 92.8 0.32 1.1E-05 46.4 8.3 152 89-268 205-377 (381)
3 2qfm_A Spermine synthase; sper 90.9 0.64 2.2E-05 44.0 8.0 146 89-266 188-358 (364)
4 3u81_A Catechol O-methyltransf 89.8 0.85 2.9E-05 37.4 6.8 77 54-130 22-102 (221)
5 3gjy_A Spermidine synthase; AP 86.9 1.2 4.2E-05 40.9 6.7 121 90-247 90-220 (317)
6 1iy9_A Spermidine synthase; ro 83.6 8.3 0.00028 33.5 10.1 46 87-132 73-120 (275)
7 3o4f_A Spermidine synthase; am 83.3 2.7 9.4E-05 38.5 7.2 49 84-132 78-128 (294)
8 2i7c_A Spermidine synthase; tr 82.5 5.1 0.00017 35.0 8.3 48 86-133 75-124 (283)
9 1mjf_A Spermidine synthase; sp 76.1 11 0.00039 32.6 8.4 46 86-131 72-118 (281)
10 2b2c_A Spermidine synthase; be 76.1 6.3 0.00022 35.5 7.0 49 85-133 104-154 (314)
11 3adn_A Spermidine synthase; am 74.2 6.8 0.00023 34.8 6.6 48 85-132 79-128 (294)
12 3bwc_A Spermidine synthase; SA 70.1 4.5 0.00015 35.7 4.5 46 87-132 93-140 (304)
13 2gpy_A O-methyltransferase; st 69.7 17 0.00057 29.7 7.5 76 55-130 20-97 (233)
14 2o07_A Spermidine synthase; st 69.0 7 0.00024 34.8 5.5 46 87-132 93-140 (304)
15 2hnk_A SAM-dependent O-methylt 67.9 17 0.00058 29.9 7.3 76 56-131 25-105 (239)
16 3cbg_A O-methyltransferase; cy 67.4 18 0.00063 29.9 7.5 75 56-130 37-116 (232)
17 3mb5_A SAM-dependent methyltra 65.2 45 0.0016 27.3 9.4 60 71-130 75-137 (255)
18 3c3p_A Methyltransferase; NP_9 65.0 23 0.00077 28.4 7.3 75 56-130 23-100 (210)
19 3r3h_A O-methyltransferase, SA 60.1 9.1 0.00031 32.4 4.3 73 57-129 26-103 (242)
20 3dr5_A Putative O-methyltransf 58.4 35 0.0012 28.4 7.6 76 55-130 19-100 (221)
21 3duw_A OMT, O-methyltransferas 57.7 35 0.0012 27.3 7.3 75 56-130 23-102 (223)
22 2avd_A Catechol-O-methyltransf 57.6 37 0.0013 27.2 7.4 75 56-130 34-113 (229)
23 1xj5_A Spermidine synthase 1; 57.2 52 0.0018 29.8 9.1 47 86-132 117-165 (334)
24 3ntv_A MW1564 protein; rossman 55.8 21 0.0007 29.5 5.7 73 58-130 40-114 (232)
25 3i9f_A Putative type 11 methyl 54.8 19 0.00065 27.4 5.0 56 77-132 5-60 (170)
26 1l3i_A Precorrin-6Y methyltran 53.9 32 0.0011 26.1 6.1 65 66-130 9-74 (192)
27 1vl5_A Unknown conserved prote 52.5 26 0.00088 28.8 5.7 59 72-130 20-78 (260)
28 1sui_A Caffeoyl-COA O-methyltr 49.4 50 0.0017 27.9 7.2 75 57-131 45-124 (247)
29 3c3y_A Pfomt, O-methyltransfer 48.8 55 0.0019 27.2 7.3 76 56-131 35-115 (237)
30 3e05_A Precorrin-6Y C5,15-meth 47.7 40 0.0014 26.7 6.0 60 71-130 21-83 (204)
31 2yxd_A Probable cobalt-precorr 46.9 57 0.0019 24.5 6.5 56 75-130 21-76 (183)
32 3tfw_A Putative O-methyltransf 46.8 59 0.002 27.1 7.2 74 57-130 29-107 (248)
33 2cmg_A Spermidine synthase; tr 43.3 32 0.0011 29.9 5.2 48 86-133 69-116 (262)
34 3kjh_A CO dehydrogenase/acetyl 42.5 12 0.0004 30.1 2.1 17 187-203 129-145 (254)
35 3h2b_A SAM-dependent methyltra 42.3 83 0.0029 24.5 7.0 58 75-133 28-85 (203)
36 1byi_A Dethiobiotin synthase; 41.5 12 0.0004 30.2 2.0 15 188-202 107-121 (224)
37 1g3q_A MIND ATPase, cell divis 41.1 12 0.00041 30.3 1.9 15 188-202 110-124 (237)
38 3pfg_A N-methyltransferase; N, 40.4 65 0.0022 26.4 6.4 60 75-134 34-95 (263)
39 3hm2_A Precorrin-6Y C5,15-meth 39.7 50 0.0017 25.0 5.2 60 71-130 6-68 (178)
40 3tr6_A O-methyltransferase; ce 39.6 1E+02 0.0034 24.5 7.2 74 57-130 29-108 (225)
41 2ph1_A Nucleotide-binding prot 38.6 14 0.00048 31.1 2.1 16 188-203 127-142 (262)
42 3hnr_A Probable methyltransfer 38.5 73 0.0025 25.1 6.2 58 75-132 31-88 (220)
43 3cgg_A SAM-dependent methyltra 37.0 78 0.0027 23.9 5.9 45 89-133 46-90 (195)
44 3p9n_A Possible methyltransfer 36.3 75 0.0026 24.8 5.9 53 79-131 31-87 (189)
45 4dzz_A Plasmid partitioning pr 35.6 16 0.00055 28.7 1.9 14 189-202 75-88 (206)
46 1dus_A MJ0882; hypothetical pr 35.2 78 0.0027 23.9 5.7 55 76-130 39-93 (194)
47 3hh2_A Growth/differentiation 32.7 10 0.00035 29.9 0.3 37 159-203 4-40 (109)
48 1hyq_A MIND, cell division inh 31.8 20 0.0007 29.6 2.0 15 188-202 109-123 (263)
49 3e8s_A Putative SAM dependent 31.5 1.3E+02 0.0043 23.4 6.4 54 77-130 40-93 (227)
50 2yvl_A TRMI protein, hypotheti 31.4 1.2E+02 0.0041 24.3 6.5 59 72-130 74-132 (248)
51 3ea0_A ATPase, para family; al 30.9 15 0.00052 29.8 1.0 15 189-203 118-132 (245)
52 3ccf_A Cyclopropane-fatty-acyl 30.6 87 0.003 26.1 5.7 54 81-134 49-102 (279)
53 2oze_A ORF delta'; para, walke 30.3 19 0.00064 30.6 1.5 52 72-123 17-77 (298)
54 2woo_A ATPase GET3; tail-ancho 30.1 21 0.00073 31.7 1.9 33 90-122 18-58 (329)
55 1wcv_1 SOJ, segregation protei 30.0 22 0.00076 29.7 1.9 15 188-202 110-124 (257)
56 3q9l_A Septum site-determining 29.4 23 0.00079 29.0 1.9 14 189-202 113-126 (260)
57 1inl_A Spermidine synthase; be 29.3 1.3E+02 0.0045 26.2 6.8 46 87-132 88-135 (296)
58 2xj4_A MIPZ; replication, cell 29.2 21 0.00071 30.6 1.6 15 188-202 102-116 (286)
59 3ez9_A Para; DNA binding, wing 28.8 19 0.00065 32.6 1.4 50 73-122 87-157 (403)
60 4ep8_A Urease subunit gamma; a 28.5 20 0.0007 28.9 1.3 16 211-226 12-27 (100)
61 3cwq_A Para family chromosome 28.5 19 0.00064 29.6 1.2 16 187-202 65-81 (209)
62 2woj_A ATPase GET3; tail-ancho 28.4 19 0.00064 32.8 1.2 33 90-122 17-59 (354)
63 3k9g_A PF-32 protein; ssgcid, 28.1 22 0.00075 29.6 1.5 15 188-202 143-157 (267)
64 4fur_A Urease subunit gamma 2; 27.5 22 0.00074 28.9 1.3 16 211-226 16-31 (104)
65 3ug7_A Arsenical pump-driving 27.5 24 0.00081 31.8 1.7 15 187-201 149-163 (349)
66 3pe5_A Uncharacterized protein 27.4 11 0.00038 36.3 -0.5 32 84-115 102-143 (403)
67 1uir_A Polyamine aminopropyltr 27.1 83 0.0028 27.7 5.2 48 85-132 73-122 (314)
68 2p35_A Trans-aconitate 2-methy 27.1 87 0.003 25.3 4.9 47 88-134 32-80 (259)
69 2qy6_A UPF0209 protein YFCK; s 27.1 63 0.0022 28.2 4.4 58 87-154 58-132 (257)
70 3io3_A DEHA2D07832P; chaperone 27.0 22 0.00076 32.5 1.5 35 88-122 15-59 (348)
71 2pwy_A TRNA (adenine-N(1)-)-me 26.9 1E+02 0.0034 25.0 5.3 62 69-130 76-140 (258)
72 3ez2_A Plasmid partition prote 26.8 22 0.00074 32.0 1.4 50 73-122 84-154 (398)
73 3owq_A LIN1025 protein; struct 26.5 19 0.00066 33.3 1.0 29 85-113 67-104 (321)
74 2pt6_A Spermidine synthase; tr 26.2 1.1E+02 0.0039 27.1 5.9 50 84-133 111-162 (321)
75 1y8c_A S-adenosylmethionine-de 25.7 1.3E+02 0.0046 23.7 5.7 60 72-131 18-79 (246)
76 3jwg_A HEN1, methyltransferase 25.0 1.2E+02 0.0041 24.0 5.3 61 72-132 12-74 (219)
77 1p91_A Ribosomal RNA large sub 24.8 1.3E+02 0.0044 24.7 5.6 54 81-134 74-132 (269)
78 1rjd_A PPM1P, carboxy methyl t 24.3 38 0.0013 30.9 2.5 42 84-125 92-134 (334)
79 2zr9_A Protein RECA, recombina 24.1 84 0.0029 28.5 4.7 63 189-252 139-224 (349)
80 3bxo_A N,N-dimethyltransferase 23.9 1E+02 0.0036 24.4 4.8 59 76-134 25-85 (239)
81 3sho_A Transcriptional regulat 23.9 2.2E+02 0.0076 22.2 6.7 85 72-158 23-113 (187)
82 3lte_A Response regulator; str 23.8 65 0.0022 22.8 3.2 42 110-152 5-46 (132)
83 1u94_A RECA protein, recombina 23.7 57 0.0019 29.9 3.6 55 188-243 140-207 (356)
84 3jwh_A HEN1; methyltransferase 23.5 1E+02 0.0034 24.5 4.6 60 72-131 12-73 (217)
85 3iqw_A Tail-anchored protein t 23.4 31 0.0011 31.3 1.7 33 90-122 15-55 (334)
86 3m33_A Uncharacterized protein 23.1 1.5E+02 0.0052 23.9 5.7 49 88-136 47-95 (226)
87 2fvh_A Urease gamma subunit; p 23.1 29 0.00099 28.8 1.3 16 211-226 32-47 (120)
88 3zq6_A Putative arsenical pump 23.1 32 0.0011 30.4 1.7 31 92-122 15-53 (324)
89 3gt7_A Sensor protein; structu 23.0 80 0.0027 23.5 3.7 21 109-129 5-25 (154)
90 3ajd_A Putative methyltransfer 22.9 36 0.0012 29.1 1.9 35 104-138 197-237 (274)
91 3bkw_A MLL3908 protein, S-aden 22.9 1.3E+02 0.0043 24.0 5.1 57 76-132 30-87 (243)
92 3igf_A ALL4481 protein; two-do 22.6 32 0.0011 32.0 1.7 12 188-199 123-134 (374)
93 2kw5_A SLR1183 protein; struct 22.3 1.4E+02 0.0049 23.1 5.2 52 80-131 20-71 (202)
94 3cio_A ETK, tyrosine-protein k 22.3 31 0.0011 30.3 1.5 14 188-201 212-225 (299)
95 3ou2_A SAM-dependent methyltra 22.1 1.8E+02 0.0063 22.5 5.8 53 77-129 33-86 (218)
96 3bt7_A TRNA (uracil-5-)-methyl 22.1 1.9E+02 0.0065 25.9 6.6 89 90-200 214-306 (369)
97 3njr_A Precorrin-6Y methylase; 22.0 1.4E+02 0.0048 24.1 5.3 57 72-130 37-96 (204)
98 1jy4_A B4dimer; eight-stranded 21.8 33 0.0011 22.7 1.1 10 259-268 20-29 (35)
99 1n0w_A DNA repair protein RAD5 21.5 49 0.0017 26.5 2.4 77 188-266 118-219 (243)
100 1o54_A SAM-dependent O-methylt 21.5 1.3E+02 0.0046 25.1 5.2 63 68-130 91-156 (277)
101 1i9g_A Hypothetical protein RV 21.3 1.5E+02 0.0051 24.5 5.4 59 72-130 82-143 (280)
102 3bfv_A CAPA1, CAPB2, membrane 21.2 34 0.0012 29.6 1.5 14 188-201 190-203 (271)
103 3la6_A Tyrosine-protein kinase 21.1 34 0.0012 30.1 1.5 41 88-128 89-140 (286)
104 1vbf_A 231AA long hypothetical 20.8 1.1E+02 0.0038 24.4 4.3 56 78-133 59-114 (231)
105 4ac7_A Urease subunit gamma; h 20.6 36 0.0012 27.4 1.3 16 211-226 12-27 (100)
No 1
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=96.50 E-value=0.003 Score=54.99 Aligned_cols=164 Identities=19% Similarity=0.191 Sum_probs=91.2
Q ss_pred CCCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCC--Cc-eeEEEeeeccccc
Q 048818 71 PQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAP--AL-RVHTVTYRTHLYE 147 (284)
Q Consensus 71 pqqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p--~l-eay~V~Y~T~~~e 147 (284)
+.++.++.+.+...++ .|-|.|-+|-|. |-+|.|...+|+-+=+|-|++|++.+++..- ++ +...|.+.. .+
T Consensus 14 ~~v~~~~~~~L~~~l~--~a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--gd 88 (202)
T 3cvo_A 14 LTMPPAEAEALRMAYE--EAEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--TD 88 (202)
T ss_dssp CCSCHHHHHHHHHHHH--HCSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--CC
T ss_pred ccCCHHHHHHHHHHhh--CCCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--eC
Confidence 3578888888877554 578999999997 6666665558999999999999998875321 11 123343331 11
Q ss_pred HHHHHHHcccCCCCCCCccCCCCcccccccccCCChhhh--c--ccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhhc
Q 048818 148 ADHLMSSYRYEKYCLPPHVHLKGNTRCKLVLNELPDDVY--N--REWDVIFIDGPRGYYAEAPGRMATIFTAAVMARARK 223 (284)
Q Consensus 148 a~~LL~~~r~~~~C~p~~~~lr~~S~CkLAL~~LP~evY--e--~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~ 223 (284)
|.+.+ .-..|... -. .-.+..++..+. + -..|+|+|||.++ ....+- .+-+-|
T Consensus 89 a~~~~------~wg~p~~~-~~-----~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~- 145 (202)
T 3cvo_A 89 IGPTG------DWGHPVSD-AK-----WRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSIT- 145 (202)
T ss_dssp CSSBC------GGGCBSSS-TT-----GGGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCS-
T ss_pred chhhh------cccccccc-hh-----hhhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcC-
Confidence 11000 01122111 00 011112222221 1 4599999999753 233333 233333
Q ss_pred CCCceeEEEecC-ChHHHHHHHHhhccccchhhcccceeeEEeCCC
Q 048818 224 SRGVTHVFLHDV-DRKVEKAYAEEFLCRKYFVKVVGKLWHFRIPPG 268 (284)
Q Consensus 224 ~gg~TdVfVHDv-dR~VE~~~s~eFLC~~nlv~~~grL~HF~Ip~~ 268 (284)
.| .=++++|| .|.-+.. .++|| .+++..||+-.|++.+.
T Consensus 146 ~G--G~Iv~DNv~~r~~y~~-v~~~~---~~~~~~~~~a~f~~~p~ 185 (202)
T 3cvo_A 146 RP--VTLLFDDYSQRRWQHQ-VEEFL---GAPLMIGRLAAFQVEPQ 185 (202)
T ss_dssp SC--EEEEETTGGGCSSGGG-GHHHH---CCCEEETTEEEEEECCC
T ss_pred CC--eEEEEeCCcCCcchHH-HHHHH---hHHhhcCceEEEEeCCC
Confidence 32 34577885 5532211 12333 35688999999999554
No 2
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=92.83 E-value=0.32 Score=46.41 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=91.6
Q ss_pred CCCcEEEeccCchhhhhhhcCCCC-ceeEeccChhHHHHHhhhCCCcee--EE----EeeecccccHHHHHHHcccCCCC
Q 048818 89 APCNLLVFGLGHDSLMWASLNPRG-TTIFLEEDSKLVHTILARAPALRV--HT----VTYRTHLYEADHLMSSYRYEKYC 161 (284)
Q Consensus 89 aPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~p~lea--y~----V~Y~T~~~ea~~LL~~~r~~~~C 161 (284)
.|=|.||.|+|--..+-..+.|.. +..-+|-||.-|+-.++-.|.+-. ++ =+.+.-..||.+-|+.+.++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~--- 281 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE--- 281 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc---
Confidence 477999999999999988888754 677899999999988887775422 11 11333456777777643210
Q ss_pred CCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCch-hhHhhHHHHHHhhc---CCCc--e---eEEE
Q 048818 162 LPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRM-ATIFTAAVMARARK---SRGV--T---HVFL 232 (284)
Q Consensus 162 ~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM-~aIyTAavmAR~r~---~gg~--T---dVfV 232 (284)
..++|||++|.+.+.....|-.. ...||.-.+...++ .+|. | -++.
T Consensus 282 -------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~ 336 (381)
T 3c6k_A 282 -------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL 336 (381)
T ss_dssp -------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC
T ss_pred -------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence 12599999998876554555444 46788766554433 3331 1 1234
Q ss_pred ecCChHHHHHHHHhhcccc---ch--hhcccceeeEEeCCC
Q 048818 233 HDVDRKVEKAYAEEFLCRK---YF--VKVVGKLWHFRIPPG 268 (284)
Q Consensus 233 HDvdR~VE~~~s~eFLC~~---nl--v~~~grL~HF~Ip~~ 268 (284)
++..+.+++.+.+.|---+ +. |-+-+..|=|.+-+.
T Consensus 337 ~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK 377 (381)
T 3c6k_A 337 TEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWK 377 (381)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred hhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEEC
Confidence 6666777777777652111 11 223334687777443
No 3
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=90.90 E-value=0.64 Score=44.01 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=84.2
Q ss_pred CCCcEEEeccCchhhhhhhcCCC-CceeEeccChhHHHHHhhhCCCcee--EE----EeeecccccHHHHHHHcccCCCC
Q 048818 89 APCNLLVFGLGHDSLMWASLNPR-GTTIFLEEDSKLVHTILARAPALRV--HT----VTYRTHLYEADHLMSSYRYEKYC 161 (284)
Q Consensus 89 aPCNfLVFGLg~dslmW~aLN~g-GrTvFLEEd~~~i~~v~~~~p~lea--y~----V~Y~T~~~ea~~LL~~~r~~~~C 161 (284)
.|-+.|+.|.|--.+.-..+.++ .+-+.+|=|+..++..++..|.+.. ++ =+.+-...||.+.|+.+...
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~--- 264 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE--- 264 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---
T ss_pred CCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc---
Confidence 48899999999998888888876 4678999999999999998886532 11 02334457787777643210
Q ss_pred CCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHH-------hhcCCCc--eeEEE
Q 048818 162 LPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMAR-------ARKSRGV--THVFL 232 (284)
Q Consensus 162 ~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR-------~r~~gg~--TdVfV 232 (284)
+-.+|||++|.|.+-...+|++ .||...... .=++||. +..=-
T Consensus 265 -------------------------~~~fDvII~D~~d~P~~~~p~~---L~t~eFy~~~~~~~~~~L~pgGilv~qs~s 316 (364)
T 2qfm_A 265 -------------------------GREFDYVINDLTAVPISTSPEE---DSTWEFLRLILDLSMKVLKQDGKYFTQGNC 316 (364)
T ss_dssp -------------------------TCCEEEEEEECCSSCCCCC-------CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred -------------------------CCCceEEEECCCCcccCcCchh---hhHHHHHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 1258999999977212224544 455444333 2234342 22222
Q ss_pred ---ecCChHHHHHHHHhhccccch------hhcccceeeEEeC
Q 048818 233 ---HDVDRKVEKAYAEEFLCRKYF------VKVVGKLWHFRIP 266 (284)
Q Consensus 233 ---HDvdR~VE~~~s~eFLC~~nl------v~~~grL~HF~Ip 266 (284)
.++-+..|+.+..-| |.-.. |-+-+.+|=|.+-
T Consensus 317 ~~~~e~~~~~~~~l~~~F-~~v~~~~~~~~vPsy~~~w~f~~~ 358 (364)
T 2qfm_A 317 VNLTEALSLYEEQLGRLY-CPVEFSKEIVCVPSYLELWVFYTV 358 (364)
T ss_dssp TTCHHHHHHHHHHHTTSS-SCEEEEEEEECCGGGSSCEEEEEE
T ss_pred cchHHHHHHHHHHHHHhC-CceEEeeEeeecCCchhheEeEEe
Confidence 233345666555555 32222 3333347777663
No 4
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=89.75 E-value=0.85 Score=37.40 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHhhcCCC-CCCChhhhhcHHHHhccCCCCcEEEeccCc--hhhhhhh-cCCCCceeEeccChhHHHHHhh
Q 048818 54 MQTQLLAIIHYATSRDI-PQLTLPEIRVPFDALLGLAPCNLLVFGLGH--DSLMWAS-LNPRGTTIFLEEDSKLVHTILA 129 (284)
Q Consensus 54 ~~~~~~AlvHYAtsn~t-pqqt~~Ei~~~~~vL~~raPCNfLVFGLg~--dslmW~a-LN~gGrTvFLEEd~~~i~~v~~ 129 (284)
++.-++++-+|+..+.. .+.+...-+.+..+++...|.++|=.|-|. -++.++. ++++|+-+-+|-++..++.+++
T Consensus 22 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 101 (221)
T 3u81_A 22 PQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ 101 (221)
T ss_dssp HHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH
Confidence 33457888899886544 466666667777777777899999997755 4454544 4568899999999999988876
Q ss_pred h
Q 048818 130 R 130 (284)
Q Consensus 130 ~ 130 (284)
+
T Consensus 102 ~ 102 (221)
T 3u81_A 102 M 102 (221)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=86.92 E-value=1.2 Score=40.95 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCcEEEeccCchhhhhhhc--CCCCceeEeccChhHHHHHhhhCCCceeEEEeeecccccHHHHHHHcccCCCCCCCccC
Q 048818 90 PCNLLVFGLGHDSLMWASL--NPRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPHVH 167 (284)
Q Consensus 90 PCNfLVFGLg~dslmW~aL--N~gGrTvFLEEd~~~i~~v~~~~p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~~~ 167 (284)
|.+.|+.|.|--++.-..+ .++.+.+-+|=|+..++..++.++....-.| +-...++.+.++
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv--~v~~~Da~~~l~-------------- 153 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRV--KIRVDDARMVAE-------------- 153 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTE--EEEESCHHHHHH--------------
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCce--EEEECcHHHHHh--------------
Confidence 5599999999877665544 4677888999999999999988764211111 112355555554
Q ss_pred CCCcccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhhHhhHHHHHHhh---cCCCceeEEEec-CC----hHH
Q 048818 168 LKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYAEAPGRMATIFTAAVMARAR---KSRGVTHVFLHD-VD----RKV 239 (284)
Q Consensus 168 lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~gg~TdVfVHD-vd----R~V 239 (284)
.+| +-.+|+|++|.+.+..+ | ...||...+...+ +.||.-=+-+.+ -+ +.+
T Consensus 154 ------------~~~----~~~fDvIi~D~~~~~~~--~---~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~ 212 (317)
T 3gjy_A 154 ------------SFT----PASRDVIIRDVFAGAIT--P---QNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSE 212 (317)
T ss_dssp ------------TCC----TTCEEEEEECCSTTSCC--C---GGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHH
T ss_pred ------------hcc----CCCCCEEEECCCCcccc--c---hhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHH
Confidence 111 23689999998876532 3 3345555444443 344532122221 12 345
Q ss_pred HHHHHHhh
Q 048818 240 EKAYAEEF 247 (284)
Q Consensus 240 E~~~s~eF 247 (284)
.+.+.+.|
T Consensus 213 ~~tL~~vF 220 (317)
T 3gjy_A 213 LAGMMEVF 220 (317)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
Confidence 55666666
No 6
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=83.64 E-value=8.3 Score=33.55 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=37.7
Q ss_pred cCCCCcEEEeccCchhhhhhhcCC-C-CceeEeccChhHHHHHhhhCC
Q 048818 87 GLAPCNLLVFGLGHDSLMWASLNP-R-GTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 87 ~raPCNfLVFGLg~dslmW~aLN~-g-GrTvFLEEd~~~i~~v~~~~p 132 (284)
...|-+.|+.|.|--.+.-..+.+ + ++-+.+|-|+..++..++..+
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~ 120 (275)
T 1iy9_A 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP 120 (275)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence 346899999999988887777766 3 688999999999998887654
No 7
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=83.29 E-value=2.7 Score=38.49 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=39.7
Q ss_pred HhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCC
Q 048818 84 ALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 84 vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p 132 (284)
.+....|=|.||.|+|-.+.+-..+.|. -+.+.+|=||.-|+-.++-.|
T Consensus 78 l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp 128 (294)
T 3o4f_A 78 LLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128 (294)
T ss_dssp HHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred HhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence 3445568899999999999998888874 377889999999987776554
No 8
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=82.55 E-value=5.1 Score=34.97 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=38.8
Q ss_pred ccCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCCC
Q 048818 86 LGLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAPA 133 (284)
Q Consensus 86 ~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p~ 133 (284)
....|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+.-++..++..+.
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~ 124 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence 3456889999999988877766665 46889999999999998887664
No 9
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=76.07 E-value=11 Score=32.61 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.6
Q ss_pred ccCCCCcEEEeccCchhhhhhhcCC-CCceeEeccChhHHHHHhhhC
Q 048818 86 LGLAPCNLLVFGLGHDSLMWASLNP-RGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 86 ~~raPCNfLVFGLg~dslmW~aLN~-gGrTvFLEEd~~~i~~v~~~~ 131 (284)
....|.++|+.|.|.-.+.-..+.+ .++-+.+|=|+..++..++..
T Consensus 72 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~ 118 (281)
T 1mjf_A 72 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI 118 (281)
T ss_dssp HSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred hCCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3456899999999988776666665 458889999999999888765
No 10
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=76.06 E-value=6.3 Score=35.45 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=38.4
Q ss_pred hccCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCCC
Q 048818 85 LLGLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAPA 133 (284)
Q Consensus 85 L~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p~ 133 (284)
+....|-++|+.|.|.-...-..+.+ +++-+.+|=|+..++..++..+.
T Consensus 104 ~~~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~ 154 (314)
T 2b2c_A 104 FAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG 154 (314)
T ss_dssp HHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred hhCCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 33456889999999987766555544 57899999999999999887764
No 11
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=74.16 E-value=6.8 Score=34.85 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=37.1
Q ss_pred hccCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCC
Q 048818 85 LLGLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 85 L~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p 132 (284)
+....|-++|+.|.|--.+.-..+.+ .++-+.+|=|+.-++..++..|
T Consensus 79 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~ 128 (294)
T 3adn_A 79 LAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128 (294)
T ss_dssp HHSTTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCH
T ss_pred hcCCCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhh
Confidence 34456899999999988877666665 3567889999999998887654
No 12
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=70.08 E-value=4.5 Score=35.69 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=36.8
Q ss_pred cCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCC
Q 048818 87 GLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 87 ~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p 132 (284)
...|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+..++..++..|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~ 140 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFP 140 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhH
Confidence 356889999999988777666655 4688899999999998887654
No 13
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=69.72 E-value=17 Score=29.66 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhhcHHHHhccCCCCcEEEeccCc--hhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 55 QTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGH--DSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 55 ~~~~~AlvHYAtsn~tpqqt~~Ei~~~~~vL~~raPCNfLVFGLg~--dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
+..++.+-+|+..+..|.........+...+....+-++|.+|-|. -+..++...++++-+-+|-++..++.++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 97 (233)
T 2gpy_A 20 DQYIEQMEREAHEQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKH 97 (233)
T ss_dssp CHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 3457778888876666666666667777777777788999997654 455566666678888999999988887765
No 14
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=69.05 E-value=7 Score=34.78 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=36.1
Q ss_pred cCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCC
Q 048818 87 GLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 87 ~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p 132 (284)
...|-++|+.|.|.-.+.-..+.+ .++-+.+|-|+..++..++..+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 140 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP 140 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 345889999999887766555555 4788999999999998887654
No 15
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=67.86 E-value=17 Score=29.90 Aligned_cols=76 Identities=13% Similarity=0.022 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcCCCC--CCChhhhhcHHHHhccCCCCcEEEeccC--chhhhhhhcCC-CCceeEeccChhHHHHHhhh
Q 048818 56 TQLLAIIHYATSRDIP--QLTLPEIRVPFDALLGLAPCNLLVFGLG--HDSLMWASLNP-RGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 56 ~~~~AlvHYAtsn~tp--qqt~~Ei~~~~~vL~~raPCNfLVFGLg--~dslmW~aLN~-gGrTvFLEEd~~~i~~v~~~ 130 (284)
..++.+-.++..+..| +........+...+....+.++|-.|-| ..+..++...+ +++-+-+|-|+..++..++.
T Consensus 25 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 104 (239)
T 2hnk_A 25 DSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKY 104 (239)
T ss_dssp HHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 3466777888877777 4566666677777776778999999765 55566665554 78999999999999888765
Q ss_pred C
Q 048818 131 A 131 (284)
Q Consensus 131 ~ 131 (284)
.
T Consensus 105 ~ 105 (239)
T 2hnk_A 105 W 105 (239)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=67.44 E-value=18 Score=29.90 Aligned_cols=75 Identities=13% Similarity=0.014 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhcCCCC--CCChhhhhcHHHHhccCCCCcEEEeccCch--hhhhhhcC-CCCceeEeccChhHHHHHhhh
Q 048818 56 TQLLAIIHYATSRDIP--QLTLPEIRVPFDALLGLAPCNLLVFGLGHD--SLMWASLN-PRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 56 ~~~~AlvHYAtsn~tp--qqt~~Ei~~~~~vL~~raPCNfLVFGLg~d--slmW~aLN-~gGrTvFLEEd~~~i~~v~~~ 130 (284)
..+.++-+++..+..| +.+..+.+.+..+++...|-++|-+|-|.- ++.++... .+|+-+-+|-++.+++..++.
T Consensus 37 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~ 116 (232)
T 3cbg_A 37 FYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKY 116 (232)
T ss_dssp HHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 4466777888776667 556666777777776677889999987654 34444433 378999999999999887764
No 17
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=65.17 E-value=45 Score=27.25 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCCChhhhhcHHHHhccCCCCcEEEeccCchhhh--hhhc-CCCCceeEeccChhHHHHHhhh
Q 048818 71 PQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLM--WASL-NPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 71 pqqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslm--W~aL-N~gGrTvFLEEd~~~i~~v~~~ 130 (284)
..+..+++..+...+.-+.+.++|-+|-|.-.+. ++.. +++++-+-+|-++..++.++++
T Consensus 75 ~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 137 (255)
T 3mb5_A 75 QIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN 137 (255)
T ss_dssp CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred ccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH
Confidence 3467788888888888778889999988766544 3333 5688888889888888877654
No 18
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=65.00 E-value=23 Score=28.38 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhcCCCCCCChhhhhcHHHHhccCCCCcEEEeccCch--hhhhhhcCC-CCceeEeccChhHHHHHhhh
Q 048818 56 TQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHD--SLMWASLNP-RGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 56 ~~~~AlvHYAtsn~tpqqt~~Ei~~~~~vL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~~ 130 (284)
..++.+-.|+..+..|..+......+..+++...|-++|-.|-|.- +..++...+ +|+-+-+|-|+..++..+++
T Consensus 23 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 100 (210)
T 3c3p_A 23 PVVAAMEQIARERNIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRM 100 (210)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 3466677888877667766666666666666667899999987654 444444444 78888999999998887755
No 19
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=60.08 E-value=9.1 Score=32.42 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCCC--CCChhhhhcHHHHhccCCCCcEEEecc--CchhhhhhhcC-CCCceeEeccChhHHHHHhh
Q 048818 57 QLLAIIHYATSRDIP--QLTLPEIRVPFDALLGLAPCNLLVFGL--GHDSLMWASLN-PRGTTIFLEEDSKLVHTILA 129 (284)
Q Consensus 57 ~~~AlvHYAtsn~tp--qqt~~Ei~~~~~vL~~raPCNfLVFGL--g~dslmW~aLN-~gGrTvFLEEd~~~i~~v~~ 129 (284)
.++.+..|+.....| +.+...-..+..+++...|-++|=.|- |..++.++... .+|+-+-+|-++.+++.+++
T Consensus 26 ~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~ 103 (242)
T 3r3h_A 26 ALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP 103 (242)
T ss_dssp HHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHH
T ss_pred HHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 356666666544322 345555666666666677999999976 45556555544 48888889988887665544
No 20
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=58.35 E-value=35 Score=28.42 Aligned_cols=76 Identities=9% Similarity=-0.032 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhhhcHHHHhccCCCC---cEEEeccCch--hhhhhh-cCCCCceeEeccChhHHHHHh
Q 048818 55 QTQLLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPC---NLLVFGLGHD--SLMWAS-LNPRGTTIFLEEDSKLVHTIL 128 (284)
Q Consensus 55 ~~~~~AlvHYAtsn~tpqqt~~Ei~~~~~vL~~raPC---NfLVFGLg~d--slmW~a-LN~gGrTvFLEEd~~~i~~v~ 128 (284)
+..++.+-.|+..+..|..+...-..+..+++...|- ++|=.|-|.- ++.++. +.++|+-+-+|-|+.+++..+
T Consensus 19 ~~~l~~~~~~a~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 98 (221)
T 3dr5_A 19 DAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAK 98 (221)
T ss_dssp CHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 3456778889887777877777666666666666666 8999988765 333333 556899999999999998887
Q ss_pred hh
Q 048818 129 AR 130 (284)
Q Consensus 129 ~~ 130 (284)
++
T Consensus 99 ~~ 100 (221)
T 3dr5_A 99 AL 100 (221)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 21
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=57.69 E-value=35 Score=27.32 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCCCCCCC--hhhhhcHHHHhccCCCCcEEEeccCch--hhhhhhcCC-CCceeEeccChhHHHHHhhh
Q 048818 56 TQLLAIIHYATSRDIPQLT--LPEIRVPFDALLGLAPCNLLVFGLGHD--SLMWASLNP-RGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 56 ~~~~AlvHYAtsn~tpqqt--~~Ei~~~~~vL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~~ 130 (284)
..++.+..++..+..|.+. ...-..+...+....|-++|-.|-|.- +..++...+ +|+-+-+|-++..++.+++.
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 102 (223)
T 3duw_A 23 STLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102 (223)
T ss_dssp HHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 3456677787777667643 444445555556667899999977554 444554444 78888899999998877754
No 22
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=57.58 E-value=37 Score=27.23 Aligned_cols=75 Identities=13% Similarity=0.025 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhc--CCCCCCChhhhhcHHHHhccCCCCcEEEeccCch--hhhhhhcCC-CCceeEeccChhHHHHHhhh
Q 048818 56 TQLLAIIHYATS--RDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHD--SLMWASLNP-RGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 56 ~~~~AlvHYAts--n~tpqqt~~Ei~~~~~vL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~~ 130 (284)
..++++-.++.. +..++.+..+...+..+++...|.++|-.|-|.- ++.++...+ +++-+-+|-++..++..++.
T Consensus 34 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 113 (229)
T 2avd_A 34 PALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL 113 (229)
T ss_dssp HHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 346667777765 3345677777777777777777999999977554 444444434 78888999999998887754
No 23
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=57.20 E-value=52 Score=29.75 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=36.0
Q ss_pred ccCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCC
Q 048818 86 LGLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 86 ~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p 132 (284)
....|-++|+.|.|.-.+.-..+.+ +++-+.+|-|+..++..++..+
T Consensus 117 ~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~ 165 (334)
T 1xj5_A 117 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFP 165 (334)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred hCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 3456889999999887665554444 5688899999999998887654
No 24
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=55.77 E-value=21 Score=29.52 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=52.2
Q ss_pred HHHHHHHhhcCCCCCCChhhhhcHHHHhccCCCCcEEEeccCc--hhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 58 LLAIIHYATSRDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGH--DSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 58 ~~AlvHYAtsn~tpqqt~~Ei~~~~~vL~~raPCNfLVFGLg~--dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
++++..|+..+..|.+.......+...++...|-++|=.|-|. -++.++...++++-+-+|=++..++..+++
T Consensus 40 l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 114 (232)
T 3ntv_A 40 IEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQN 114 (232)
T ss_dssp GGGHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 5566677776666766666666667777767789999997755 444555544788888899999988877654
No 25
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=54.82 E-value=19 Score=27.45 Aligned_cols=56 Identities=5% Similarity=-0.014 Sum_probs=41.3
Q ss_pred hhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCC
Q 048818 77 EIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 77 Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p 132 (284)
....+.+.+.-..+-++|-+|-|...........+++.+-+|-++..++..+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 60 (170)
T 3i9f_A 5 RPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFD 60 (170)
T ss_dssp -CTTTHHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCT
T ss_pred CHHHHHHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCC
Confidence 34445555655567799999988877777766776788888989999988888733
No 26
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=53.91 E-value=32 Score=26.07 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=45.7
Q ss_pred hcCCCCCCChhhhhc-HHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 66 TSRDIPQLTLPEIRV-PFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 66 tsn~tpqqt~~Ei~~-~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
.++..|+.+..++.. +.+.+.-..+-++|.+|-|...+.......+++-+-+|-|+..++..+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~ 74 (192)
T 1l3i_A 9 KNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN 74 (192)
T ss_dssp CCTTSCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH
T ss_pred cCCCCCCCChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH
Confidence 344455455555543 34555555677999999988777666666668888899999988887764
No 27
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=52.50 E-value=26 Score=28.84 Aligned_cols=59 Identities=7% Similarity=-0.067 Sum_probs=46.8
Q ss_pred CCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 72 QLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
+.+.+++..+.+.+..+.+-++|-+|-|...+.......+++.+-+|-++..++..+++
T Consensus 20 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 78 (260)
T 1vl5_A 20 HAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF 78 (260)
T ss_dssp ---CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 56777888888888888889999999988777766666778888999999999887754
No 28
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=49.39 E-value=50 Score=27.90 Aligned_cols=75 Identities=12% Similarity=0.006 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcCCCC--CCChhhhhcHHHHhccCCCCcEEEeccCch--hhhhhhcCC-CCceeEeccChhHHHHHhhhC
Q 048818 57 QLLAIIHYATSRDIP--QLTLPEIRVPFDALLGLAPCNLLVFGLGHD--SLMWASLNP-RGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 57 ~~~AlvHYAtsn~tp--qqt~~Ei~~~~~vL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~~~ 131 (284)
.++++-+|+..+..| +.+...-..+..+++...|-++|-.|-|.- ++.++...+ +|+-+-+|-|+.+++..++..
T Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~ 124 (247)
T 1sui_A 45 AMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVI 124 (247)
T ss_dssp HHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 467777888765543 445555555555666667899999987654 344444333 889999999999998887653
No 29
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=48.75 E-value=55 Score=27.21 Aligned_cols=76 Identities=12% Similarity=-0.077 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhcCCCC--CCChhhhhcHHHHhccCCCCcEEEeccCc--hhhhhhhc-CCCCceeEeccChhHHHHHhhh
Q 048818 56 TQLLAIIHYATSRDIP--QLTLPEIRVPFDALLGLAPCNLLVFGLGH--DSLMWASL-NPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 56 ~~~~AlvHYAtsn~tp--qqt~~Ei~~~~~vL~~raPCNfLVFGLg~--dslmW~aL-N~gGrTvFLEEd~~~i~~v~~~ 130 (284)
..++++-.|+..+..| +.+..+...+..+++...|-++|-.|-|. -++.++.. ..+|+-+-+|-|+.+++..++.
T Consensus 35 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~ 114 (237)
T 3c3y_A 35 GFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPF 114 (237)
T ss_dssp HHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 3467777887765443 44555555666666667799999997755 44444444 3489999999999999888765
Q ss_pred C
Q 048818 131 A 131 (284)
Q Consensus 131 ~ 131 (284)
.
T Consensus 115 ~ 115 (237)
T 3c3y_A 115 I 115 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=47.71 E-value=40 Score=26.66 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=44.2
Q ss_pred CCCChhhh-hcHHHHhccCCCCcEEEeccCc--hhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 71 PQLTLPEI-RVPFDALLGLAPCNLLVFGLGH--DSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 71 pqqt~~Ei-~~~~~vL~~raPCNfLVFGLg~--dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
.+++..|+ ..+.+.+.-+...++|-+|-|. -+..++...++++-+-+|-++..++..+++
T Consensus 21 g~~~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~ 83 (204)
T 3e05_A 21 KLITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN 83 (204)
T ss_dssp TTSCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 45588888 4556666666678999997755 455566666668888899999998887764
No 31
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=46.86 E-value=57 Score=24.53 Aligned_cols=56 Identities=7% Similarity=-0.108 Sum_probs=40.8
Q ss_pred hhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 75 LPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 75 ~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
..-...+.+.+....+-++|=+|-|.-.+......++++.+-+|-++..++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 76 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQN 76 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 33344555666555677999998888776655555778888899999998887765
No 32
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=46.77 E-value=59 Score=27.14 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCCCCCCC--hhhhhcHHHHhccCCCCcEEEeccCch--hhhhhhcCC-CCceeEeccChhHHHHHhhh
Q 048818 57 QLLAIIHYATSRDIPQLT--LPEIRVPFDALLGLAPCNLLVFGLGHD--SLMWASLNP-RGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 57 ~~~AlvHYAtsn~tpqqt--~~Ei~~~~~vL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~~ 130 (284)
.++.+..++-.+..|.+. ...-..+...+....|-++|-.|-|.- ++.++...+ +|+-+-+|-++..++.++++
T Consensus 29 ~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~ 107 (248)
T 3tfw_A 29 VLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAREN 107 (248)
T ss_dssp HHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 356667777766667643 444445555556667899999987654 444444444 78888999999999887765
No 33
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=43.31 E-value=32 Score=29.86 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=38.5
Q ss_pred ccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCC
Q 048818 86 LGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPA 133 (284)
Q Consensus 86 ~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~ 133 (284)
....|-+.|+.|.|--.+.-..+.++++-+.+|=|+..++..++..+.
T Consensus 69 ~~~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~ 116 (262)
T 2cmg_A 69 TKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH 116 (262)
T ss_dssp TSSCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTT
T ss_pred cCCCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh
Confidence 344588999999998887766666667888899999999988876654
No 34
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=42.51 E-value=12 Score=30.11 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=14.3
Q ss_pred cccccEEEEeCCCCCCC
Q 048818 187 NREWDVIFIDGPRGYYA 203 (284)
Q Consensus 187 e~eWDvImVDgP~Gy~p 203 (284)
.-+.|+|+||+|.|...
T Consensus 129 ~~~yD~viiD~pp~~~~ 145 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH 145 (254)
T ss_dssp HTCCSEEEEEECTTCTT
T ss_pred cCCCCEEEEeCCCcccH
Confidence 45789999999998865
No 35
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=42.28 E-value=83 Score=24.52 Aligned_cols=58 Identities=17% Similarity=0.053 Sum_probs=43.3
Q ss_pred hhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCC
Q 048818 75 LPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPA 133 (284)
Q Consensus 75 ~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~ 133 (284)
..+...+...+... +-++|-+|-|...........|.+.+-+|-++..++..+++.++
T Consensus 28 ~~~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~ 85 (203)
T 3h2b_A 28 DPDRVLIEPWATGV-DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPS 85 (203)
T ss_dssp CTTHHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCC
Confidence 34555566666554 88999998887776665555677888999999999998887554
No 36
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=41.46 E-value=12 Score=30.18 Aligned_cols=15 Identities=20% Similarity=0.762 Sum_probs=13.0
Q ss_pred ccccEEEEeCCCCCC
Q 048818 188 REWDVIFIDGPRGYY 202 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~ 202 (284)
-+.|+|+||+|.|..
T Consensus 107 ~~yD~viID~p~~l~ 121 (224)
T 1byi_A 107 QQADWVLVEGAGGWF 121 (224)
T ss_dssp TTCSEEEEECSSSTT
T ss_pred HhCCEEEEEcCCccc
Confidence 368999999999876
No 37
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=41.12 E-value=12 Score=30.35 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=12.7
Q ss_pred ccccEEEEeCCCCCC
Q 048818 188 REWDVIFIDGPRGYY 202 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~ 202 (284)
-++|+|+||+|.|..
T Consensus 110 ~~yD~viiD~~~~~~ 124 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ 124 (237)
T ss_dssp GGCSEEEEECCSSSS
T ss_pred hcCCEEEEECCCCcC
Confidence 468999999998865
No 38
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=40.43 E-value=65 Score=26.43 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=46.5
Q ss_pred hhhhhcHHHHhccCC--CCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCCc
Q 048818 75 LPEIRVPFDALLGLA--PCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPAL 134 (284)
Q Consensus 75 ~~Ei~~~~~vL~~ra--PCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~l 134 (284)
..+...+.+.|.+.. +.++|=+|-|...+.......|.+.+-+|=++..++..+++.+++
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~ 95 (263)
T 3pfg_A 34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDA 95 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCC
Confidence 345556666666543 589999999888887777777888899999999999998876643
No 39
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=39.73 E-value=50 Score=24.98 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCCChhhhhc-HHHHhccCCCCcEEEeccCchhhhh--hhcCCCCceeEeccChhHHHHHhhh
Q 048818 71 PQLTLPEIRV-PFDALLGLAPCNLLVFGLGHDSLMW--ASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 71 pqqt~~Ei~~-~~~vL~~raPCNfLVFGLg~dslmW--~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
.++|..|+.. +.+.+.-+.+..+|.+|-|.-.+.. +...++++-+-+|=++..++..+++
T Consensus 6 g~~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~ 68 (178)
T 3hm2_A 6 GQLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN 68 (178)
T ss_dssp CCSHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 3677777763 3344444556799999887665544 4444477888889999888877765
No 40
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=39.64 E-value=1e+02 Score=24.55 Aligned_cols=74 Identities=15% Similarity=0.015 Sum_probs=50.5
Q ss_pred HHHHHHHHhh-cCCCC--CCChhhhhcHHHHhccCCCCcEEEeccCc--hhhhhhhcCC-CCceeEeccChhHHHHHhhh
Q 048818 57 QLLAIIHYAT-SRDIP--QLTLPEIRVPFDALLGLAPCNLLVFGLGH--DSLMWASLNP-RGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 57 ~~~AlvHYAt-sn~tp--qqt~~Ei~~~~~vL~~raPCNfLVFGLg~--dslmW~aLN~-gGrTvFLEEd~~~i~~v~~~ 130 (284)
.++.+-.++. ...-+ +.+......+..++....|.++|-.|-|. .++.++...+ +++-+-+|-++..++.++++
T Consensus 29 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 108 (225)
T 3tr6_A 29 LLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEY 108 (225)
T ss_dssp HHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Confidence 4566667665 44333 45555666666666667789999997754 4455554333 78888999999999887765
No 41
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=38.62 E-value=14 Score=31.11 Aligned_cols=16 Identities=38% Similarity=0.434 Sum_probs=13.1
Q ss_pred ccccEEEEeCCCCCCC
Q 048818 188 REWDVIFIDGPRGYYA 203 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~p 203 (284)
-++|+|+||+|.|...
T Consensus 127 ~~yD~ViID~pp~~~~ 142 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGD 142 (262)
T ss_dssp CSCSEEEEECCSSSSS
T ss_pred cCCCEEEEECcCCCch
Confidence 4689999999998643
No 42
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=38.49 E-value=73 Score=25.11 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=44.3
Q ss_pred hhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCC
Q 048818 75 LPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 75 ~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p 132 (284)
...+..+.+.+..+.+.++|-+|-|...+.-...+.|.+.+-+|-++..++..+++.+
T Consensus 31 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 88 (220)
T 3hnr_A 31 FAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP 88 (220)
T ss_dssp TTTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC
Confidence 3444556666666678899999888777666655668888999999999998888765
No 43
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=37.03 E-value=78 Score=23.93 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=36.0
Q ss_pred CCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCC
Q 048818 89 APCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPA 133 (284)
Q Consensus 89 aPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~ 133 (284)
.+.++|-+|-|...........|.+.+-+|-++..++..+++.++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~ 90 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPE 90 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCC
Confidence 577999998887766655555678888999999999999888754
No 44
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=36.34 E-value=75 Score=24.81 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=35.2
Q ss_pred hcHHHHhcc---CCCCcEEEeccCchhhhhhhcCCC-CceeEeccChhHHHHHhhhC
Q 048818 79 RVPFDALLG---LAPCNLLVFGLGHDSLMWASLNPR-GTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 79 ~~~~~vL~~---raPCNfLVFGLg~dslmW~aLN~g-GrTvFLEEd~~~i~~v~~~~ 131 (284)
..+.+.|.. ..+.++|=+|-|.-.+.-..+..| ++.+-+|-|+..++..+++.
T Consensus 31 ~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 87 (189)
T 3p9n_A 31 ESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNI 87 (189)
T ss_dssp HHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH
Confidence 344555554 356788888777665544333344 46888999999998887654
No 45
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=35.60 E-value=16 Score=28.67 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.9
Q ss_pred cccEEEEeCCCCCC
Q 048818 189 EWDVIFIDGPRGYY 202 (284)
Q Consensus 189 eWDvImVDgP~Gy~ 202 (284)
+.|+|+||+|.|..
T Consensus 75 ~yD~viiD~~~~~~ 88 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS 88 (206)
T ss_dssp TSSEEEEECCSSSS
T ss_pred CCCEEEEECCCCCC
Confidence 57999999998863
No 46
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=35.16 E-value=78 Score=23.89 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=40.4
Q ss_pred hhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 76 PEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 76 ~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
.....+.+.+..+.+.++|-+|-|...+.-.....+++.+-+|-++..++..+++
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~ 93 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN 93 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH
Confidence 5566677777666777999998877665544444477888889899888877654
No 47
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=32.73 E-value=10 Score=29.86 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=26.5
Q ss_pred CCCCCCccCCCCcccccccccCCChhhhcccccEEEEeCCCCCCC
Q 048818 159 KYCLPPHVHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRGYYA 203 (284)
Q Consensus 159 ~~C~p~~~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~p 203 (284)
-+|.+..+ .+.|.+ +.|-=.+=|+-||.|+ +|+||.+
T Consensus 4 ~~C~~~~~----~~~C~r--~~l~V~F~dlGWdWIi--aP~~y~a 40 (109)
T 3hh2_A 4 LDCDEHST----ESRCCR--YPLTVDFEAFGWDWII--APKRYKA 40 (109)
T ss_dssp CBCCTTCC----CCBSEE--ECCEEEHHHHTCTTEE--ECSEEEC
T ss_pred ccCCCCCC----CCCcEE--EEEEEeHHHcCCCeEe--CCCcccc
Confidence 46766532 456776 4777888899999776 6999954
No 48
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=31.84 E-value=20 Score=29.60 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=12.7
Q ss_pred ccccEEEEeCCCCCC
Q 048818 188 REWDVIFIDGPRGYY 202 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~ 202 (284)
-+.|+|+||+|.|..
T Consensus 109 ~~yD~viiD~~~~~~ 123 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE 123 (263)
T ss_dssp HTCSEEEEECCSSSS
T ss_pred hhCCEEEEeCCCCCC
Confidence 468999999998865
No 49
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=31.53 E-value=1.3e+02 Score=23.45 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=44.0
Q ss_pred hhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 77 EIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 77 Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
....+.+.+..+.|.++|=+|-|.-.........|.+.+-+|-++..++..+++
T Consensus 40 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 93 (227)
T 3e8s_A 40 TDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA 93 (227)
T ss_dssp HHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT
T ss_pred ccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh
Confidence 444566677777899999999988877777777788888999999999988887
No 50
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=31.40 E-value=1.2e+02 Score=24.34 Aligned_cols=59 Identities=15% Similarity=0.020 Sum_probs=40.1
Q ss_pred CCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 72 QLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
.....++..+.+.+.-+..-++|.+|-|.-.+.-.....+++-+.+|-++..++..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 132 (248)
T 2yvl_A 74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKN 132 (248)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHH
T ss_pred cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 34456666666666656677999998876544333333377888888899888877654
No 51
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=30.86 E-value=15 Score=29.78 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=13.0
Q ss_pred cccEEEEeCCCCCCC
Q 048818 189 EWDVIFIDGPRGYYA 203 (284)
Q Consensus 189 eWDvImVDgP~Gy~p 203 (284)
+.|+|+||+|.|..+
T Consensus 118 ~yD~viiD~p~~~~~ 132 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH 132 (245)
T ss_dssp HCSEEEEEEESSCCT
T ss_pred hCCEEEEeCCCCCch
Confidence 789999999998754
No 52
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=30.64 E-value=87 Score=26.08 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=42.0
Q ss_pred HHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCCc
Q 048818 81 PFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPAL 134 (284)
Q Consensus 81 ~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~l 134 (284)
+.+.+....+.++|-.|-|...+......+|++.+-+|-++..++..+++.+++
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~ 102 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHL 102 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCC
Confidence 445565566789999998887776666668899999999999999888765443
No 53
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=30.30 E-value=19 Score=30.59 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCChhhhhcHHHHhccCCCCcEEEe-----ccCchhh----hhhhcCCCCceeEeccChhH
Q 048818 72 QLTLPEIRVPFDALLGLAPCNLLVF-----GLGHDSL----MWASLNPRGTTIFLEEDSKL 123 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~raPCNfLVF-----GLg~dsl----mW~aLN~gGrTvFLEEd~~~ 123 (284)
+...+.+..+.+.++.+...=.++. |-|.-++ .+..-..|-|++.+|-|+..
T Consensus 17 ~~~~~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 17 KEELKILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp HHHHHHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred hhhHHHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3444455556666665544433332 4565543 22222356689999988864
No 54
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=30.13 E-value=21 Score=31.75 Aligned_cols=33 Identities=12% Similarity=0.301 Sum_probs=20.7
Q ss_pred CCcEEEe----ccCchhh----hhhhcCCCCceeEeccChh
Q 048818 90 PCNLLVF----GLGHDSL----MWASLNPRGTTIFLEEDSK 122 (284)
Q Consensus 90 PCNfLVF----GLg~dsl----mW~aLN~gGrTvFLEEd~~ 122 (284)
+-.++|+ |.|.-+. .++.-..|-||+.+|-|+.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4456677 5666543 3333345668999998875
No 55
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=29.99 E-value=22 Score=29.69 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=12.8
Q ss_pred ccccEEEEeCCCCCC
Q 048818 188 REWDVIFIDGPRGYY 202 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~ 202 (284)
-+.|+|+||+|.|..
T Consensus 110 ~~yD~iiiD~pp~~~ 124 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS 124 (257)
T ss_dssp TTCSEEEEECCSSCC
T ss_pred cCCCEEEEeCCCCCC
Confidence 468999999999864
No 56
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=29.45 E-value=23 Score=28.96 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=12.2
Q ss_pred cccEEEEeCCCCCC
Q 048818 189 EWDVIFIDGPRGYY 202 (284)
Q Consensus 189 eWDvImVDgP~Gy~ 202 (284)
+.|+|+||+|.|..
T Consensus 113 ~yD~viiD~p~~~~ 126 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE 126 (260)
T ss_dssp TCSEEEEECCSSSS
T ss_pred CCCEEEEcCCCCCC
Confidence 67999999998774
No 57
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=29.34 E-value=1.3e+02 Score=26.19 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=37.4
Q ss_pred cCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCC
Q 048818 87 GLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 87 ~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p 132 (284)
...|-++|+.|.|.-.+.-..+.+ +++-+.+|-|+..++.+++..+
T Consensus 88 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~ 135 (296)
T 1inl_A 88 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK 135 (296)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 446889999999988877777766 4688999999999998887653
No 58
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=29.15 E-value=21 Score=30.65 Aligned_cols=15 Identities=47% Similarity=0.642 Sum_probs=12.6
Q ss_pred ccccEEEEeCCCCCC
Q 048818 188 REWDVIFIDGPRGYY 202 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~ 202 (284)
-+.|+|+||+|.|..
T Consensus 102 ~~yD~viiD~p~~~~ 116 (286)
T 2xj4_A 102 AECDFILIDTPGGDS 116 (286)
T ss_dssp HHCSEEEEECCSSCC
T ss_pred hcCCEEEEcCCCCcc
Confidence 468999999999863
No 59
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=28.84 E-value=19 Score=32.56 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=26.4
Q ss_pred CChhhhhcHHHHhc------cCCCCcEEEe-----ccCchh----hhhhhc------CCCCceeEeccChh
Q 048818 73 LTLPEIRVPFDALL------GLAPCNLLVF-----GLGHDS----LMWASL------NPRGTTIFLEEDSK 122 (284)
Q Consensus 73 qt~~Ei~~~~~vL~------~raPCNfLVF-----GLg~ds----lmW~aL------N~gGrTvFLEEd~~ 122 (284)
.|.+|+..+.+... ...++..++| |-|.-+ |-+..- +.|-|++.+|=|+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 46777776665421 1236666666 445543 222221 56889999998874
No 60
>4ep8_A Urease subunit gamma; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* 1fwb_A* 1fwc_A* 1fwd_A* 1fwe_A* 1fwf_A* 1fwg_A* 1fwh_A* ...
Probab=28.51 E-value=20 Score=28.88 Aligned_cols=16 Identities=50% Similarity=0.758 Sum_probs=13.2
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+.-|
T Consensus 12 li~~aa~lA~rR~~RG 27 (100)
T 4ep8_A 12 LLFTAALVAERRLARG 27 (100)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5899999999998443
No 61
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=28.48 E-value=19 Score=29.60 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.0
Q ss_pred cccccEEEEeCCCC-CC
Q 048818 187 NREWDVIFIDGPRG-YY 202 (284)
Q Consensus 187 e~eWDvImVDgP~G-y~ 202 (284)
.-+.|+|+||.|.| ..
T Consensus 65 ~~~yD~viiD~p~~~~~ 81 (209)
T 3cwq_A 65 APKYQNIVIDTQARPED 81 (209)
T ss_dssp GGGCSEEEEEEECCCSS
T ss_pred hhcCCEEEEeCCCCcCc
Confidence 34689999999998 54
No 62
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=28.38 E-value=19 Score=32.78 Aligned_cols=33 Identities=12% Similarity=0.298 Sum_probs=21.0
Q ss_pred CCcEEEe----ccCchhh----hhhhc--CCCCceeEeccChh
Q 048818 90 PCNLLVF----GLGHDSL----MWASL--NPRGTTIFLEEDSK 122 (284)
Q Consensus 90 PCNfLVF----GLg~dsl----mW~aL--N~gGrTvFLEEd~~ 122 (284)
+--++|+ |.|.-+. -++.- ..|-|++.++-|+.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 3456666 5666542 33333 56779999998874
No 63
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=28.06 E-value=22 Score=29.64 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.4
Q ss_pred ccccEEEEeCCCCCC
Q 048818 188 REWDVIFIDGPRGYY 202 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~ 202 (284)
-+.|+|+||+|.|..
T Consensus 143 ~~yD~viiD~pp~~~ 157 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD 157 (267)
T ss_dssp TTCSEEEEEECSSCS
T ss_pred cCCCEEEEECcCCcc
Confidence 468999999998763
No 64
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=27.55 E-value=22 Score=28.90 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.2
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+.-|
T Consensus 16 li~~aa~lA~rR~~RG 31 (104)
T 4fur_A 16 VIHMLSDVALKRKNKG 31 (104)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5899999999998443
No 65
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=27.54 E-value=24 Score=31.82 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=12.2
Q ss_pred cccccEEEEeCCCCC
Q 048818 187 NREWDVIFIDGPRGY 201 (284)
Q Consensus 187 e~eWDvImVDgP~Gy 201 (284)
+-+||+|+||+|.+.
T Consensus 149 ~~~yD~VIiDtpPt~ 163 (349)
T 3ug7_A 149 SNEFDVVIFDTAPTG 163 (349)
T ss_dssp CCSCSEEEECSCCCT
T ss_pred hCCCCEEEECCCCCh
Confidence 458999999988754
No 66
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.38A {Clostridium leptum}
Probab=27.38 E-value=11 Score=36.34 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=24.3
Q ss_pred HhccCCCCcEEEeccCc----------hhhhhhhcCCCCcee
Q 048818 84 ALLGLAPCNLLVFGLGH----------DSLMWASLNPRGTTI 115 (284)
Q Consensus 84 vL~~raPCNfLVFGLg~----------dslmW~aLN~gGrTv 115 (284)
+++..-|-|+|++|.-. |++|..++|+...++
T Consensus 102 ~~k~~~~~NILLlGvDsr~~~~~~gRSDtimLvsin~~~k~v 143 (403)
T 3pe5_A 102 LIKDPMVLNIMLFGSDERPGETGYGRSDTMMLLSIDNRNKKL 143 (403)
T ss_dssp CBCCTTEEEEEEEEESBCCCSSSCCBCCEEEEEEEETTTTEE
T ss_pred eecCCCCEEEEEEEEeCCCCCCCCCCCcEEEEEEEcCCCCEE
Confidence 44566699999999843 689999999864433
No 67
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=27.14 E-value=83 Score=27.71 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=37.7
Q ss_pred hccCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCC
Q 048818 85 LLGLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 85 L~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p 132 (284)
+....|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+..++..++..+
T Consensus 73 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 122 (314)
T 1uir_A 73 LTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP 122 (314)
T ss_dssp HHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred hcCCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 33456889999999988776666655 5688999999999998887654
No 68
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=27.09 E-value=87 Score=25.27 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=35.1
Q ss_pred CCCCcEEEeccCchhhhhh--hcCCCCceeEeccChhHHHHHhhhCCCc
Q 048818 88 LAPCNLLVFGLGHDSLMWA--SLNPRGTTIFLEEDSKLVHTILARAPAL 134 (284)
Q Consensus 88 raPCNfLVFGLg~dslmW~--aLN~gGrTvFLEEd~~~i~~v~~~~p~l 134 (284)
..+-++|-+|-|...+... ...++++.+-+|-++..++..+++.+++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 80 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNT 80 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCc
Confidence 4577999998876555443 3334889999999999999888775554
No 69
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=27.07 E-value=63 Score=28.23 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=34.9
Q ss_pred cCCCCcEEEecc--Cchhhh-hhhc------CCCC-----ceeEeccCh---hHHHHHhhhCCCceeEEEeeecccccHH
Q 048818 87 GLAPCNLLVFGL--GHDSLM-WASL------NPRG-----TTIFLEEDS---KLVHTILARAPALRVHTVTYRTHLYEAD 149 (284)
Q Consensus 87 ~raPCNfLVFGL--g~dslm-W~aL------N~gG-----rTvFLEEd~---~~i~~v~~~~p~leay~V~Y~T~~~ea~ 149 (284)
.+.+.++|-.|+ |...+. |.+. |+.+ .-+=+|-+| +-+.++.+..|++. ..|.
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~----------~~a~ 127 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELA----------PWAE 127 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGH----------HHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHH----------HHHH
Confidence 445678887655 444444 6555 7754 223367676 66666666666653 3567
Q ss_pred HHHHH
Q 048818 150 HLMSS 154 (284)
Q Consensus 150 ~LL~~ 154 (284)
+|++.
T Consensus 128 ~l~~~ 132 (257)
T 2qy6_A 128 QLQAQ 132 (257)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77764
No 70
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=27.01 E-value=22 Score=32.52 Aligned_cols=35 Identities=11% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCCCcEEEe----ccCchh----hhhhhc--CCCCceeEeccChh
Q 048818 88 LAPCNLLVF----GLGHDS----LMWASL--NPRGTTIFLEEDSK 122 (284)
Q Consensus 88 raPCNfLVF----GLg~ds----lmW~aL--N~gGrTvFLEEd~~ 122 (284)
..+-.++|| |-|.-+ +.|..- ..|-|++.++-|+.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 345577777 445443 333333 77889999998864
No 71
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=26.91 E-value=1e+02 Score=24.95 Aligned_cols=62 Identities=13% Similarity=0.034 Sum_probs=44.3
Q ss_pred CCCCCChhhhhcHHHHhccCCCCcEEEeccCchhh--hhhhc-CCCCceeEeccChhHHHHHhhh
Q 048818 69 DIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSL--MWASL-NPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 69 ~tpqqt~~Ei~~~~~vL~~raPCNfLVFGLg~dsl--mW~aL-N~gGrTvFLEEd~~~i~~v~~~ 130 (284)
....+..+++..+...+.-+...++|.+|-|.-.+ .++.. +++++-+-+|-++..++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 140 (258)
T 2pwy_A 76 SATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN 140 (258)
T ss_dssp SSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 33346667777777777766778999998776543 34433 5678888888899888877765
No 72
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=26.83 E-value=22 Score=32.04 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=32.5
Q ss_pred CChhhhhcHHHHhc------cCCCCcEEEe-----ccCchh----hhhhhc------CCCCceeEeccChh
Q 048818 73 LTLPEIRVPFDALL------GLAPCNLLVF-----GLGHDS----LMWASL------NPRGTTIFLEEDSK 122 (284)
Q Consensus 73 qt~~Ei~~~~~vL~------~raPCNfLVF-----GLg~ds----lmW~aL------N~gGrTvFLEEd~~ 122 (284)
+|.+++..+.+.+. ...++..++| |-|.-+ |-|..- +.|-|++.+|=|+.
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 47888888877762 2236777766 456554 223222 46889999998874
No 73
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, unknown FUN; 2.61A {Listeria innocua} PDB: 3nro_A
Probab=26.54 E-value=19 Score=33.25 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=21.3
Q ss_pred hccCCCCcEEEeccC---------chhhhhhhcCCCCc
Q 048818 85 LLGLAPCNLLVFGLG---------HDSLMWASLNPRGT 113 (284)
Q Consensus 85 L~~raPCNfLVFGLg---------~dslmW~aLN~gGr 113 (284)
+..+-|-|+|++|.- .|+.|..++|+...
T Consensus 67 ~~~~~~~niLllG~D~~~~~~~~rsDtiml~~in~~~~ 104 (321)
T 3owq_A 67 LEKKKPFSVLLMGSDARPGETNGRADTIILATANKQQN 104 (321)
T ss_dssp ---CCCEEEEEEECC------CCCCSEEEEEEEETTTT
T ss_pred cccCCcEEEEEEEEeCCCCCCCCCCcEEEEEEEeCCCC
Confidence 567779999999973 47889999998543
No 74
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=26.24 E-value=1.1e+02 Score=27.14 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=39.7
Q ss_pred HhccCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhCCC
Q 048818 84 ALLGLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARAPA 133 (284)
Q Consensus 84 vL~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~p~ 133 (284)
.+....|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+.-++..++..+.
T Consensus 111 l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~ 162 (321)
T 2pt6_A 111 MTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162 (321)
T ss_dssp HHHSSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred HhcCCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 334456899999999988877766665 56888999999999999887664
No 75
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=25.68 E-value=1.3e+02 Score=23.70 Aligned_cols=60 Identities=7% Similarity=-0.118 Sum_probs=44.0
Q ss_pred CCChhhhhcHHHHhccC--CCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhC
Q 048818 72 QLTLPEIRVPFDALLGL--APCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~r--aPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~ 131 (284)
......+..+.+.|.+. .+-++|-+|-|...+.......|.+.+-+|-++..++..+++.
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~ 79 (246)
T 1y8c_A 18 VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF 79 (246)
T ss_dssp CCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH
Confidence 33445566677777776 5789999988877666555556778888999999988877653
No 76
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=25.01 E-value=1.2e+02 Score=23.99 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=45.5
Q ss_pred CCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCC--CceeEeccChhHHHHHhhhCC
Q 048818 72 QLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPR--GTTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~p 132 (284)
++...-+..+.+.+....+-++|=+|-|.-.+.......+ .+.+-+|-++..++..+++.+
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 3455566777788887788999999887766655555444 688889999999998887643
No 77
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=24.83 E-value=1.3e+02 Score=24.72 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=37.4
Q ss_pred HHHHhcc---CCCCcEEEeccCchhhh--hhhcCCCCceeEeccChhHHHHHhhhCCCc
Q 048818 81 PFDALLG---LAPCNLLVFGLGHDSLM--WASLNPRGTTIFLEEDSKLVHTILARAPAL 134 (284)
Q Consensus 81 ~~~vL~~---raPCNfLVFGLg~dslm--W~aLN~gGrTvFLEEd~~~i~~v~~~~p~l 134 (284)
+.+.+.+ ..+-++|.+|-|...+. ++...+|++.+-+|-++..++..+++.+++
T Consensus 74 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 132 (269)
T 1p91_A 74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQV 132 (269)
T ss_dssp HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCc
Confidence 4444444 35678999988765443 333334778888999999999888876543
No 78
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=24.32 E-value=38 Score=30.86 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=32.8
Q ss_pred HhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccC-hhHHH
Q 048818 84 ALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEED-SKLVH 125 (284)
Q Consensus 84 vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd-~~~i~ 125 (284)
.|++...|.+++.|=|.|+..|.-.|+++++.|.|=| |+-++
T Consensus 92 fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~ 134 (334)
T 1rjd_A 92 FLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVE 134 (334)
T ss_dssp HHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHH
T ss_pred HHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHH
Confidence 3444567999999999999999999987778888855 55444
No 79
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=24.14 E-value=84 Score=28.52 Aligned_cols=63 Identities=22% Similarity=0.397 Sum_probs=32.3
Q ss_pred cccEEEEeCCCCCCC--CCCCchhhH--------hh---HHHHHHhhcCCCceeEEEecCChHHHHHH----------HH
Q 048818 189 EWDVIFIDGPRGYYA--EAPGRMATI--------FT---AAVMARARKSRGVTHVFLHDVDRKVEKAY----------AE 245 (284)
Q Consensus 189 eWDvImVDgP~Gy~p--eaPGRM~aI--------yT---AavmAR~r~~gg~TdVfVHDvdR~VE~~~----------s~ 245 (284)
.=|+|+||.+....+ +-.|+|+.. .+ -.+....++. +.|=|++..+.+.++..| +.
T Consensus 139 ~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~-~~tVI~inh~~~~~~~~~~~p~~~~gg~~l 217 (349)
T 2zr9_A 139 ALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNS-GTTAIFINELREKIGVMFGSPETTTGGKAL 217 (349)
T ss_dssp CCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHH-TCEEEEEEECC-----------CCSSHHHH
T ss_pred CCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHh-CCEEEEEeccccccCcccCCCcccCCchHh
Confidence 358999999998875 323444321 11 1111112222 578899999999988776 35
Q ss_pred hhccccc
Q 048818 246 EFLCRKY 252 (284)
Q Consensus 246 eFLC~~n 252 (284)
+|.|+--
T Consensus 218 ~~~ad~~ 224 (349)
T 2zr9_A 218 KFYASVR 224 (349)
T ss_dssp HHHCSEE
T ss_pred hhccceE
Confidence 7888753
No 80
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=23.92 E-value=1e+02 Score=24.39 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=41.1
Q ss_pred hhhhcHHHHhcc--CCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCCc
Q 048818 76 PEIRVPFDALLG--LAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPAL 134 (284)
Q Consensus 76 ~Ei~~~~~vL~~--raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~l 134 (284)
.+...+.+.|.+ ..+-++|=+|-|.....-.....+.+.+-+|-++..++..+++.+++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~ 85 (239)
T 3bxo_A 25 AEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA 85 (239)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCC
Confidence 344455566655 34678999988776655555555667888999999999888876543
No 81
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.89 E-value=2.2e+02 Score=22.22 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=56.2
Q ss_pred CCChhhhhcHHHHhccCCCCcEEEeccCchhhhhh----hcCCCCcee-EeccC-hhHHHHHhhhCCCceeEEEeeeccc
Q 048818 72 QLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWA----SLNPRGTTI-FLEED-SKLVHTILARAPALRVHTVTYRTHL 145 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~----aLN~gGrTv-FLEEd-~~~i~~v~~~~p~leay~V~Y~T~~ 145 (284)
++..+++..+.+.|.+. . ++.|||.|.....=. .|+.-|..+ ++.+| ..+......-.++--.--+.+.-.-
T Consensus 23 ~l~~~~l~~~~~~i~~a-~-~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t 100 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRA-D-HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYL 100 (187)
T ss_dssp TCCHHHHHHHHHHHHHC-S-EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCC
T ss_pred hCCHHHHHHHHHHHHhC-C-EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCC
Confidence 45678888888888763 3 999999998665322 233445554 45534 4555555555666556667777666
Q ss_pred ccHHHHHHHcccC
Q 048818 146 YEADHLMSSYRYE 158 (284)
Q Consensus 146 ~ea~~LL~~~r~~ 158 (284)
.+.-++++.+|+.
T Consensus 101 ~~~~~~~~~ak~~ 113 (187)
T 3sho_A 101 RDTVAALAGAAER 113 (187)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 7777888877764
No 82
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.84 E-value=65 Score=22.77 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=20.5
Q ss_pred CCCceeEeccChhHHHHHhhhCCCceeEEEeeecccccHHHHH
Q 048818 110 PRGTTIFLEEDSKLVHTILARAPALRVHTVTYRTHLYEADHLM 152 (284)
Q Consensus 110 ~gGrTvFLEEd~~~i~~v~~~~p~leay~V~Y~T~~~ea~~LL 152 (284)
.+-+-+.+|+|+.....++...-. .-|.|..-....+|-+++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l 46 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKR-DHWQVEIAHNGFDAGIKL 46 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHH-CCcEEEEeCCHHHHHHHH
Confidence 345667788888775554432111 224554434444444444
No 83
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=23.74 E-value=57 Score=29.91 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=25.4
Q ss_pred ccccEEEEeCCCCCCC--CCCCchhh--------H---hhHHHHHHhhcCCCceeEEEecCChHHHHHH
Q 048818 188 REWDVIFIDGPRGYYA--EAPGRMAT--------I---FTAAVMARARKSRGVTHVFLHDVDRKVEKAY 243 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~p--eaPGRM~a--------I---yTAavmAR~r~~gg~TdVfVHDvdR~VE~~~ 243 (284)
..-|+|+||.+....+ +-.|+|+. . +.-.+..-.++ -+.|=|+++.+.+.++..|
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~-~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-SNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHH-HTCEEEEEEC---------
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHH-hCCEEEEEeccccccCccc
Confidence 3568999999998875 22344431 1 11111111222 2678899999999999877
No 84
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=23.48 E-value=1e+02 Score=24.49 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCChhhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCC--CCceeEeccChhHHHHHhhhC
Q 048818 72 QLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNP--RGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~ 131 (284)
+.....+..+.+.+....+-++|=+|-|.-.+....... ..+.+-+|-++..++..+++.
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 73 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH
Confidence 556667778888888888899999988766655544433 357888898999988888764
No 85
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=23.36 E-value=31 Score=31.34 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=19.6
Q ss_pred CCcEEEe----ccCchh----hhhhhcCCCCceeEeccChh
Q 048818 90 PCNLLVF----GLGHDS----LMWASLNPRGTTIFLEEDSK 122 (284)
Q Consensus 90 PCNfLVF----GLg~ds----lmW~aLN~gGrTvFLEEd~~ 122 (284)
...++|| |-|.-+ +.+..-..|-|++.++-|+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3456666 445443 33334456778999998854
No 86
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=23.14 E-value=1.5e+02 Score=23.89 Aligned_cols=49 Identities=18% Similarity=0.078 Sum_probs=40.4
Q ss_pred CCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCCcee
Q 048818 88 LAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPALRV 136 (284)
Q Consensus 88 raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~lea 136 (284)
..+-++|-+|-|.-.........|.+.+-+|-++..++.++++.|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 95 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADV 95 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceE
Confidence 3577899999988888777777788999999999999999988665443
No 87
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=23.13 E-value=29 Score=28.79 Aligned_cols=16 Identities=44% Similarity=0.601 Sum_probs=13.4
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+.-|
T Consensus 32 li~~Aa~LA~rR~aRG 47 (120)
T 2fvh_A 32 LLSYAAELARRRRARG 47 (120)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcc
Confidence 5999999999998443
No 88
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=23.12 E-value=32 Score=30.43 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=18.9
Q ss_pred cEEEe----ccCchh----hhhhhcCCCCceeEeccChh
Q 048818 92 NLLVF----GLGHDS----LMWASLNPRGTTIFLEEDSK 122 (284)
Q Consensus 92 NfLVF----GLg~ds----lmW~aLN~gGrTvFLEEd~~ 122 (284)
-++|| |-|.-+ +.|+.-..|-|++.++-|+.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 45555 445543 33443445889999998873
No 89
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=22.97 E-value=80 Score=23.45 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=13.7
Q ss_pred CCCCceeEeccChhHHHHHhh
Q 048818 109 NPRGTTIFLEEDSKLVHTILA 129 (284)
Q Consensus 109 N~gGrTvFLEEd~~~i~~v~~ 129 (284)
+.+.+-+.+|+|+.....++.
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~ 25 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKH 25 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHH
Confidence 345677888998887665553
No 90
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=22.94 E-value=36 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=28.5
Q ss_pred hhhhcCCCCceeEe------ccChhHHHHHhhhCCCceeEE
Q 048818 104 MWASLNPRGTTIFL------EEDSKLVHTILARAPALRVHT 138 (284)
Q Consensus 104 mW~aLN~gGrTvFL------EEd~~~i~~v~~~~p~leay~ 138 (284)
++..|++||+-||- +|+++-|+.+.+++|+.+.-.
T Consensus 197 ~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~ 237 (274)
T 3ajd_A 197 GIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELII 237 (274)
T ss_dssp HHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEEC
T ss_pred HHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEec
Confidence 36689999998873 589999999999999877543
No 91
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=22.92 E-value=1.3e+02 Score=23.95 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=42.2
Q ss_pred hhhhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCC-ceeEeccChhHHHHHhhhCC
Q 048818 76 PEIRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRG-TTIFLEEDSKLVHTILARAP 132 (284)
Q Consensus 76 ~Ei~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~p 132 (284)
.+...+.+.+....+-++|-+|-|...........|. +.+-+|-++..++..+++.+
T Consensus 30 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 87 (243)
T 3bkw_A 30 AEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP 87 (243)
T ss_dssp TTHHHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC
T ss_pred HhHHHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc
Confidence 4455677777777788999998877665554444455 78889999999998887754
No 92
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=22.58 E-value=32 Score=32.01 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=10.0
Q ss_pred ccccEEEEeCCC
Q 048818 188 REWDVIFIDGPR 199 (284)
Q Consensus 188 ~eWDvImVDgP~ 199 (284)
-+||+|+||+|.
T Consensus 123 ~~yD~VIvDtpP 134 (374)
T 3igf_A 123 GKYDTIVYDGTG 134 (374)
T ss_dssp TCCSEEEEECCC
T ss_pred cCCCEEEEeCCC
Confidence 479999999764
No 93
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=22.30 E-value=1.4e+02 Score=23.09 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=37.5
Q ss_pred cHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhC
Q 048818 80 VPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARA 131 (284)
Q Consensus 80 ~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~ 131 (284)
.+.+.+....|-++|-+|-|.-.+.-.....|.+.+-+|-++..++.++++.
T Consensus 20 ~l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~ 71 (202)
T 2kw5_A 20 FLVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA 71 (202)
T ss_dssp SHHHHHHHSCSSEEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 3445555545559999988876666555566778888999999988887664
No 94
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=22.30 E-value=31 Score=30.32 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.9
Q ss_pred ccccEEEEeCCCCC
Q 048818 188 REWDVIFIDGPRGY 201 (284)
Q Consensus 188 ~eWDvImVDgP~Gy 201 (284)
-++|+|+||+|.+.
T Consensus 212 ~~yD~VIIDtpp~~ 225 (299)
T 3cio_A 212 DHYDLVIVDTPPML 225 (299)
T ss_dssp HHCSEEEEECCCTT
T ss_pred hCCCEEEEcCCCCc
Confidence 46899999999865
No 95
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=22.11 E-value=1.8e+02 Score=22.48 Aligned_cols=53 Identities=8% Similarity=0.021 Sum_probs=39.6
Q ss_pred hhhcHHHHhccCC-CCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhh
Q 048818 77 EIRVPFDALLGLA-PCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILA 129 (284)
Q Consensus 77 Ei~~~~~vL~~ra-PCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~ 129 (284)
.+..+.+.|.+.. +-++|-+|-|...+.-.....|.+-+-+|-++..++..++
T Consensus 33 ~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~ 86 (218)
T 3ou2_A 33 AAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR 86 (218)
T ss_dssp THHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh
Confidence 3556667776544 5799999888776665555557788889999999888887
No 96
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=22.08 E-value=1.9e+02 Score=25.89 Aligned_cols=89 Identities=20% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCcEEEe--ccCchhhhhhhcCCCCceeEeccChhHHHHHhhhC--CCceeEEEeeecccccHHHHHHHcccCCCCCCCc
Q 048818 90 PCNLLVF--GLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARA--PALRVHTVTYRTHLYEADHLMSSYRYEKYCLPPH 165 (284)
Q Consensus 90 PCNfLVF--GLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~C~p~~ 165 (284)
+-.+|=. |.|.-++.++. .+++.+-+|-++..++..+++. .+++ .|.+ ...++.+++.......+-+.
T Consensus 214 ~~~vLDl~cG~G~~~l~la~--~~~~V~gvd~~~~ai~~a~~n~~~ng~~--~v~~--~~~d~~~~~~~~~~~~~~~~-- 285 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR--NFDRVLATEIAKPSVAAAQYNIAANHID--NVQI--IRMAAEEFTQAMNGVREFNR-- 285 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG--GSSEEEEECCCHHHHHHHHHHHHHTTCC--SEEE--ECCCSHHHHHHHSSCCCCTT--
T ss_pred CCEEEEccCCCCHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEE--EECCHHHHHHHHhhcccccc--
Confidence 3455544 66777775554 4678899999999999887653 3443 2333 23566677654432211000
Q ss_pred cCCCCcccccccccCCChhhhcccccEEEEeCCCC
Q 048818 166 VHLKGNTRCKLVLNELPDDVYNREWDVIFIDGPRG 200 (284)
Q Consensus 166 ~~lr~~S~CkLAL~~LP~evYe~eWDvImVDgP~G 200 (284)
+. =.+|. +-.+|+|++|-|+.
T Consensus 286 --l~--------~~~~~----~~~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 286 --LQ--------GIDLK----SYQCETIFVDPPRS 306 (369)
T ss_dssp --GG--------GSCGG----GCCEEEEEECCCTT
T ss_pred --cc--------ccccc----cCCCCEEEECcCcc
Confidence 10 00111 12689999999984
No 97
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=21.97 E-value=1.4e+02 Score=24.09 Aligned_cols=57 Identities=25% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCChhhhhc-HHHHhccCCCCcEEEeccCchhh--hhhhcCCCCceeEeccChhHHHHHhhh
Q 048818 72 QLTLPEIRV-PFDALLGLAPCNLLVFGLGHDSL--MWASLNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 72 qqt~~Ei~~-~~~vL~~raPCNfLVFGLg~dsl--mW~aLN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
.++..|+.. +...+.-...-.+|-.|-|.-.+ .++.. +++.+-+|-+++.++..+++
T Consensus 37 ~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~ 96 (204)
T 3njr_A 37 QITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKN 96 (204)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHH
Confidence 567777753 44555555567899998766554 34444 88888899999998887765
No 98
>1jy4_A B4dimer; eight-stranded beta-sheet, disulfide bond, de novo protein design; HET: DPR; NMR {Synthetic} SCOP: k.35.1.1 PDB: 1jy6_A*
Probab=21.75 E-value=33 Score=22.68 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=7.6
Q ss_pred ceeeEEeCCC
Q 048818 259 KLWHFRIPPG 268 (284)
Q Consensus 259 rL~HF~Ip~~ 268 (284)
.-|||++|..
T Consensus 20 qkwhfvlpgy 29 (35)
T 1jy4_A 20 QKWHFVLPGY 29 (35)
T ss_dssp EEEEEEETTE
T ss_pred eeeEEecCCc
Confidence 3599999864
No 99
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=21.52 E-value=49 Score=26.48 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=34.9
Q ss_pred ccccEEEEeCCCCCCCC-CCC--c-------hhhHhhHHHHHHhhcCCCceeEEEecCChHHHH--HH-----------H
Q 048818 188 REWDVIFIDGPRGYYAE-APG--R-------MATIFTAAVMARARKSRGVTHVFLHDVDRKVEK--AY-----------A 244 (284)
Q Consensus 188 ~eWDvImVDgP~Gy~pe-aPG--R-------M~aIyTAavmAR~r~~gg~TdVfVHDvdR~VE~--~~-----------s 244 (284)
.+=|+|+||.|....+. -.| . +..+.. .+...+++. |.|=|+++.+.+.+|. .| +
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~l~~~~~~~-~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~ 195 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR-MLLRLADEF-GVAVVITNQVVAQVDGAAMFAADPKKPIGGNI 195 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHH-HHHHHHHHH-CCEEEEEC------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHc-CCEEEEEeeeeecCCCccccCCCcccCCccCh
Confidence 45689999999966542 222 2 222221 222222222 6788888888888776 34 4
Q ss_pred Hhhccccchhhc--ccceeeEEeC
Q 048818 245 EEFLCRKYFVKV--VGKLWHFRIP 266 (284)
Q Consensus 245 ~eFLC~~nlv~~--~grL~HF~Ip 266 (284)
++++|+.-++=. .|..+...|.
T Consensus 196 ~~~~~d~vi~l~~~~~~~r~l~v~ 219 (243)
T 1n0w_A 196 IAHASTTRLYLRKGRGETRICKIY 219 (243)
T ss_dssp -CCTTCEEEEEEECSTTEEEEEEC
T ss_pred hhhcCcEEEEEEEcCCCeEEEEEE
Confidence 788888755433 2345555553
No 100
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=21.50 E-value=1.3e+02 Score=25.09 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=45.3
Q ss_pred CCCCCCChhhhhcHHHHhccCCCCcEEEeccCchhh--hhhhc-CCCCceeEeccChhHHHHHhhh
Q 048818 68 RDIPQLTLPEIRVPFDALLGLAPCNLLVFGLGHDSL--MWASL-NPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 68 n~tpqqt~~Ei~~~~~vL~~raPCNfLVFGLg~dsl--mW~aL-N~gGrTvFLEEd~~~i~~v~~~ 130 (284)
+....+..+++..+...+.-+...++|..|-|.-.+ .++.. .++++-+.+|-++..++.++++
T Consensus 91 ~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~ 156 (277)
T 1o54_A 91 RRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN 156 (277)
T ss_dssp C-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH
T ss_pred ccCCccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 333446677787777777766778999998876543 34433 5678888999999988887765
No 101
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=21.26 E-value=1.5e+02 Score=24.47 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=42.9
Q ss_pred CCChhhhhcHHHHhccCCCCcEEEeccCchhhh--hhh-cCCCCceeEeccChhHHHHHhhh
Q 048818 72 QLTLPEIRVPFDALLGLAPCNLLVFGLGHDSLM--WAS-LNPRGTTIFLEEDSKLVHTILAR 130 (284)
Q Consensus 72 qqt~~Ei~~~~~vL~~raPCNfLVFGLg~dslm--W~a-LN~gGrTvFLEEd~~~i~~v~~~ 130 (284)
.+..+++..+...+.-+...++|..|-|.-.+. ++. ++++++-+-+|-++..++.++++
T Consensus 82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 143 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRN 143 (280)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 345667777777777666789999988765543 333 45688888899999988877764
No 102
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=21.24 E-value=34 Score=29.64 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=11.7
Q ss_pred ccccEEEEeCCCCC
Q 048818 188 REWDVIFIDGPRGY 201 (284)
Q Consensus 188 ~eWDvImVDgP~Gy 201 (284)
-++|+|+||+|.+.
T Consensus 190 ~~yD~VIIDtpp~~ 203 (271)
T 3bfv_A 190 MNYNFVIIDTPPVN 203 (271)
T ss_dssp HHCSEEEEECCCTT
T ss_pred hCCCEEEEeCCCCc
Confidence 36899999999864
No 103
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=21.13 E-value=34 Score=30.09 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=24.3
Q ss_pred CCCCcEEEe-----ccCchhh----hhhhcCCCCceeEeccChh--HHHHHh
Q 048818 88 LAPCNLLVF-----GLGHDSL----MWASLNPRGTTIFLEEDSK--LVHTIL 128 (284)
Q Consensus 88 raPCNfLVF-----GLg~dsl----mW~aLN~gGrTvFLEEd~~--~i~~v~ 128 (284)
..+++.++| |-|.-++ .+..-..|-|++.+|-|+. .+....
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~ 140 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELL 140 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHh
Confidence 346777766 4454432 2333345779999998875 344444
No 104
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=20.85 E-value=1.1e+02 Score=24.43 Aligned_cols=56 Identities=13% Similarity=-0.059 Sum_probs=39.5
Q ss_pred hhcHHHHhccCCCCcEEEeccCchhhhhhhcCCCCceeEeccChhHHHHHhhhCCC
Q 048818 78 IRVPFDALLGLAPCNLLVFGLGHDSLMWASLNPRGTTIFLEEDSKLVHTILARAPA 133 (284)
Q Consensus 78 i~~~~~vL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~p~ 133 (284)
+..+.+.+....+.++|-.|-|...+.-.....+++-+-+|-++..++..+++...
T Consensus 59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 114 (231)
T 1vbf_A 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY 114 (231)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh
Confidence 34455555555677999998876655544444568888899999999988876553
No 105
>4ac7_A Urease subunit gamma; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_A* 1ie7_A* 1ubp_A* 4ubp_A* 3ubp_A* 2ubp_A* 4ep8_A* 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* ...
Probab=20.55 E-value=36 Score=27.44 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=13.1
Q ss_pred hHhhHHHHHHhhcCCC
Q 048818 211 TIFTAAVMARARKSRG 226 (284)
Q Consensus 211 aIyTAavmAR~r~~gg 226 (284)
-||+||.+||.|+.-|
T Consensus 12 li~~a~~lA~rR~arG 27 (100)
T 4ac7_A 12 QIFLASELLLRRKARG 27 (100)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcc
Confidence 4899999999998443
Done!