Query 048821
Match_columns 188
No_of_seqs 242 out of 1923
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 13:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02947 oxidoreductase 100.0 8.9E-36 1.9E-40 254.1 14.7 164 23-188 25-195 (374)
2 PLN02904 oxidoreductase 100.0 1.2E-35 2.5E-40 252.2 14.7 169 19-188 9-181 (357)
3 PLN02758 oxidoreductase, 2OG-F 100.0 1.1E-35 2.4E-40 252.8 13.7 164 23-188 14-184 (361)
4 PLN02216 protein SRG1 100.0 3E-35 6.5E-40 249.8 14.0 162 24-188 15-182 (357)
5 PLN02393 leucoanthocyanidin di 100.0 4.3E-34 9.3E-39 243.2 13.3 168 19-188 8-183 (362)
6 PLN03178 leucoanthocyanidin di 100.0 3.9E-33 8.4E-38 237.2 13.4 164 24-188 6-181 (360)
7 PLN02912 oxidoreductase, 2OG-F 100.0 5.3E-33 1.1E-37 235.3 13.5 163 22-188 4-170 (348)
8 PLN02515 naringenin,2-oxogluta 100.0 1.1E-32 2.4E-37 234.0 13.1 152 33-188 11-168 (358)
9 PLN02639 oxidoreductase, 2OG-F 100.0 1.3E-32 2.8E-37 232.2 13.0 155 27-188 3-163 (337)
10 PLN02254 gibberellin 3-beta-di 100.0 8.5E-33 1.8E-37 234.7 11.6 149 31-188 24-178 (358)
11 PLN00417 oxidoreductase, 2OG-F 100.0 3.8E-32 8.3E-37 230.1 14.6 161 25-188 8-175 (348)
12 PLN02276 gibberellin 20-oxidas 100.0 5.9E-32 1.3E-36 230.0 12.8 148 35-188 18-179 (361)
13 PLN02704 flavonol synthase 100.0 1.4E-31 3.1E-36 225.7 13.5 159 24-188 4-170 (335)
14 KOG0143 Iron/ascorbate family 100.0 5E-31 1.1E-35 220.9 12.2 128 59-188 15-148 (322)
15 PLN02750 oxidoreductase, 2OG-F 100.0 8.3E-31 1.8E-35 221.9 13.0 147 35-188 2-166 (345)
16 PTZ00273 oxidase reductase; Pr 100.0 4.3E-29 9.3E-34 209.5 11.6 128 60-188 4-150 (320)
17 PLN02485 oxidoreductase 100.0 1.6E-28 3.4E-33 206.8 11.5 127 60-188 6-156 (329)
18 COG3491 PcbC Isopenicillin N s 100.0 4.4E-28 9.5E-33 197.5 10.4 127 60-188 4-147 (322)
19 PLN03176 flavanone-3-hydroxyla 100.0 9.8E-28 2.1E-32 174.3 10.6 111 26-141 6-117 (120)
20 PF14226 DIOX_N: non-haem diox 99.9 5.4E-28 1.2E-32 174.4 8.3 95 62-160 1-96 (116)
21 PLN02997 flavonol synthase 99.9 1.5E-27 3.3E-32 200.3 11.8 120 59-188 30-154 (325)
22 PLN03002 oxidoreductase, 2OG-F 99.9 1.5E-27 3.2E-32 201.1 11.4 123 60-188 13-153 (332)
23 PLN02299 1-aminocyclopropane-1 99.9 1.6E-27 3.4E-32 199.9 11.4 121 60-188 5-128 (321)
24 PLN02403 aminocyclopropanecarb 99.9 1.7E-26 3.8E-31 192.2 10.9 119 61-188 2-123 (303)
25 PLN02156 gibberellin 2-beta-di 99.9 3.9E-26 8.6E-31 192.3 11.8 118 59-188 24-148 (335)
26 PLN02984 oxidoreductase, 2OG-F 99.9 4.8E-25 1E-29 186.2 10.6 122 59-188 36-171 (341)
27 PLN02365 2-oxoglutarate-depend 99.9 1.5E-24 3.3E-29 180.5 9.6 116 60-188 4-125 (300)
28 PLN03001 oxidoreductase, 2OG-F 99.1 6.1E-11 1.3E-15 97.1 5.1 80 108-188 1-89 (262)
29 PRK08333 L-fuculose phosphate 79.7 4.5 9.8E-05 31.1 5.0 36 61-100 120-155 (184)
30 PRK08130 putative aldolase; Va 78.1 2.7 6E-05 33.2 3.5 36 61-100 127-162 (213)
31 PF07350 DUF1479: Protein of u 76.1 2.2 4.9E-05 37.3 2.6 56 58-118 46-101 (416)
32 PRK05874 L-fuculose-phosphate 67.9 5.8 0.00013 31.5 3.1 36 61-100 127-162 (217)
33 PRK06755 hypothetical protein; 65.7 7 0.00015 31.0 3.1 36 61-100 136-171 (209)
34 PRK06833 L-fuculose phosphate 63.4 9.6 0.00021 30.1 3.5 36 61-100 124-159 (214)
35 PF00596 Aldolase_II: Class II 62.8 4.4 9.5E-05 30.9 1.4 37 60-100 122-159 (184)
36 TIGR02624 rhamnu_1P_ald rhamnu 59.1 19 0.0004 29.8 4.6 36 61-100 177-212 (270)
37 PRK08660 L-fuculose phosphate 58.5 12 0.00026 28.7 3.2 35 61-100 115-149 (181)
38 PRK06357 hypothetical protein; 58.4 27 0.00059 27.7 5.3 36 61-100 130-171 (216)
39 PRK05834 hypothetical protein; 57.7 29 0.00064 27.0 5.3 38 61-100 121-160 (194)
40 COG1402 Uncharacterized protei 57.7 39 0.00084 27.6 6.1 43 75-117 87-132 (250)
41 PRK06754 mtnB methylthioribulo 57.3 25 0.00054 27.6 4.9 34 61-100 137-172 (208)
42 PRK03634 rhamnulose-1-phosphat 55.9 12 0.00026 30.9 2.9 36 61-100 179-214 (274)
43 cd00379 Ribosomal_L10_P0 Ribos 55.5 38 0.00082 24.9 5.4 39 76-114 3-42 (155)
44 TIGR03328 salvage_mtnB methylt 54.6 17 0.00036 28.2 3.4 35 61-100 126-163 (193)
45 PRK08087 L-fuculose phosphate 54.0 15 0.00032 29.1 3.1 36 61-100 122-157 (215)
46 PF01471 PG_binding_1: Putativ 53.8 23 0.00049 21.3 3.3 44 78-121 3-46 (57)
47 PF12368 DUF3650: Protein of u 50.8 8.7 0.00019 20.4 0.9 17 93-109 9-25 (28)
48 PRK06557 L-ribulose-5-phosphat 48.7 17 0.00037 28.7 2.7 36 61-100 130-167 (221)
49 TIGR01086 fucA L-fuculose phos 48.2 20 0.00043 28.3 3.0 35 62-100 122-156 (214)
50 cd00398 Aldolase_II Class II A 47.8 15 0.00033 28.7 2.2 39 60-100 121-159 (209)
51 PF03460 NIR_SIR_ferr: Nitrite 43.9 31 0.00068 21.6 2.9 38 77-114 23-68 (69)
52 cd05797 Ribosomal_L10 Ribosoma 43.7 81 0.0018 23.3 5.6 40 75-114 4-44 (157)
53 cd05796 Ribosomal_P0_like Ribo 43.6 57 0.0012 24.6 4.8 39 76-114 3-42 (163)
54 PRK06661 hypothetical protein; 42.9 26 0.00055 28.1 2.9 24 77-100 137-160 (231)
55 cd05795 Ribosomal_P0_L10e Ribo 42.0 68 0.0015 24.5 5.0 39 76-114 3-42 (175)
56 PRK00099 rplJ 50S ribosomal pr 41.0 94 0.002 23.5 5.7 40 75-114 5-45 (172)
57 TIGR02409 carnitine_bodg gamma 40.8 36 0.00078 29.1 3.7 52 59-116 107-158 (366)
58 PRK07490 hypothetical protein; 40.0 29 0.00064 28.0 2.9 25 76-100 145-169 (245)
59 COG0244 RplJ Ribosomal protein 39.5 1E+02 0.0022 23.7 5.6 42 74-115 6-48 (175)
60 PF11243 DUF3045: Protein of u 39.3 23 0.0005 23.6 1.7 21 81-101 36-56 (89)
61 PF00466 Ribosomal_L10: Riboso 39.2 1.2E+02 0.0026 20.4 5.7 42 74-115 4-46 (100)
62 PRK04019 rplP0 acidic ribosoma 38.7 79 0.0017 26.8 5.4 40 75-114 7-47 (330)
63 PF08823 PG_binding_2: Putativ 35.3 90 0.0019 20.4 4.1 37 77-113 15-51 (74)
64 COG0289 DapB Dihydrodipicolina 34.9 99 0.0022 25.5 5.1 41 77-117 105-145 (266)
65 PF11043 DUF2856: Protein of u 32.5 53 0.0011 22.0 2.6 24 102-125 20-43 (97)
66 PRK09220 methylthioribulose-1- 32.1 46 0.00099 26.0 2.7 25 76-100 144-171 (204)
67 COG2450 Uncharacterized conser 31.6 76 0.0016 23.1 3.5 35 60-94 64-99 (124)
68 PRK15331 chaperone protein Sic 30.7 71 0.0015 24.4 3.4 42 75-117 8-49 (165)
69 COG4185 Uncharacterized protei 29.4 1.3E+02 0.0027 23.4 4.5 34 79-112 82-137 (187)
70 PF00586 AIRS: AIR synthase re 29.2 58 0.0013 21.8 2.6 25 74-98 71-95 (96)
71 PRK08324 short chain dehydroge 28.8 1.5E+02 0.0032 27.7 5.9 51 61-116 155-217 (681)
72 COG3113 Predicted NTP binding 28.4 1.1E+02 0.0023 21.4 3.7 43 61-104 40-83 (99)
73 PF01113 DapB_N: Dihydrodipico 28.0 1.2E+02 0.0025 21.5 4.1 44 64-114 71-115 (124)
74 PRK08193 araD L-ribulose-5-pho 24.8 1.1E+02 0.0024 24.4 3.8 40 61-100 124-172 (231)
75 COG0325 Predicted enzyme with 24.8 2.3E+02 0.005 22.9 5.5 44 75-118 101-155 (228)
76 PRK06208 hypothetical protein; 24.7 66 0.0014 26.6 2.5 25 76-100 176-200 (274)
77 PRK06770 hypothetical protein; 24.5 1.1E+02 0.0025 23.7 3.6 41 79-127 79-119 (180)
78 PRK07044 aldolase II superfami 24.5 83 0.0018 25.5 3.1 37 61-100 138-174 (252)
79 KOG4513 Phosphoglycerate mutas 24.2 78 0.0017 27.8 2.9 28 75-102 433-462 (531)
80 KOG2631 Class II aldolase/addu 24.1 1.8E+02 0.0039 23.3 4.7 60 59-123 154-221 (238)
81 PF04914 DltD_C: DltD C-termin 24.1 88 0.0019 22.8 2.8 23 74-97 72-94 (130)
82 PRK06486 hypothetical protein; 23.8 70 0.0015 26.1 2.5 24 77-100 162-185 (262)
83 PF03668 ATP_bind_2: P-loop AT 23.7 1.1E+02 0.0024 25.6 3.6 29 83-113 17-45 (284)
84 PRK09553 tauD taurine dioxygen 23.4 1.9E+02 0.004 23.6 5.0 54 58-118 12-65 (277)
85 PF00072 Response_reg: Respons 22.7 76 0.0016 21.0 2.2 58 61-120 45-102 (112)
86 PLN02433 uroporphyrinogen deca 22.7 1.9E+02 0.0042 24.4 5.1 42 75-116 293-338 (345)
87 COG3384 Aromatic ring-opening 22.6 1.6E+02 0.0036 24.3 4.4 41 57-99 128-170 (268)
88 PF14701 hDGE_amylase: glucano 22.5 1E+02 0.0022 27.2 3.4 100 80-187 270-392 (423)
89 PRK02289 4-oxalocrotonate taut 22.4 1E+02 0.0022 18.8 2.6 17 105-121 21-37 (60)
90 KOG1602 Cis-prenyltransferase 22.4 1.7E+02 0.0038 24.1 4.4 46 78-123 67-119 (271)
91 TIGR03677 rpl7ae 50S ribosomal 22.2 1.4E+02 0.0031 21.2 3.6 46 60-115 68-116 (117)
92 PRK11460 putative hydrolase; P 22.2 2.3E+02 0.005 22.2 5.2 39 78-116 165-209 (232)
93 PRK00115 hemE uroporphyrinogen 22.0 1.9E+02 0.004 24.4 4.9 41 75-115 300-344 (346)
94 TIGR02410 carnitine_TMLD trime 21.5 1.1E+02 0.0024 26.2 3.3 51 61-116 100-150 (362)
95 cd00491 4Oxalocrotonate_Tautom 21.3 1.1E+02 0.0023 18.1 2.5 17 105-121 20-36 (58)
96 cd00465 URO-D_CIMS_like The UR 20.9 1.6E+02 0.0035 24.0 4.2 37 77-113 261-305 (306)
97 PF09440 eIF3_N: eIF3 subunit 20.9 76 0.0017 23.3 2.0 18 96-113 114-131 (133)
98 PTZ00135 60S acidic ribosomal 20.8 2.6E+02 0.0056 23.6 5.3 41 74-114 8-49 (310)
99 PTZ00240 60S ribosomal protein 20.5 1.7E+02 0.0037 24.9 4.2 38 76-113 8-46 (323)
100 PRK02220 4-oxalocrotonate taut 20.4 1.1E+02 0.0024 18.4 2.5 16 107-122 23-38 (61)
101 cd04367 IlGF_insulin_like IlGF 20.3 78 0.0017 21.1 1.7 24 77-100 8-31 (79)
102 PF13376 OmdA: Bacteriocin-pro 20.3 1.1E+02 0.0025 18.9 2.5 30 97-126 3-35 (63)
103 cd04368 IlGF IlGF, insulin_lik 20.2 99 0.0021 19.9 2.1 21 77-97 8-28 (67)
No 1
>PLN02947 oxidoreductase
Probab=100.00 E-value=8.9e-36 Score=254.10 Aligned_cols=164 Identities=30% Similarity=0.529 Sum_probs=132.9
Q ss_pred cccHHHHHHCCCCCCCCcccCCCCCCCcccccc---CCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCC
Q 048821 23 KAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDL---RHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHD 99 (188)
Q Consensus 23 ~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~~---~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG 99 (188)
.++||.|+++|+.+||++||+|++++|...... .....+||||||+.+.+ ..+..++++|++||++||||||+|||
T Consensus 25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~-~~~~~~~~~l~~Ac~~~GFF~v~nHG 103 (374)
T PLN02947 25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRG-SNRPHVLATLAAACREYGFFQVVNHG 103 (374)
T ss_pred ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCC-ccHHHHHHHHHHHHHHCcEEEEEcCC
Confidence 368999999999999999999999988531100 01345799999998853 34778999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC----CCCCCCChHHHHH
Q 048821 100 IPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN----PPPPEEYPEACRY 175 (188)
Q Consensus 100 I~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~----~~wP~~~p~~fr~ 175 (188)
||.++++++++.+++||+||.|+|+++.........||+...........+|+|.+.+...|. +.||+ .|++||+
T Consensus 104 Ip~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~-~~~~fr~ 182 (374)
T PLN02947 104 VPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPS-SPADLRK 182 (374)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCcc-chHHHHH
Confidence 999999999999999999999999998644333456887654433456689999988765552 37996 5678999
Q ss_pred HHHHHHHHHhhcC
Q 048821 176 AFLHLLNNIQRRA 188 (188)
Q Consensus 176 ~~~~Y~~~~~~La 188 (188)
++++|+++|++|+
T Consensus 183 ~~~~Y~~~~~~L~ 195 (374)
T PLN02947 183 VAATYAKATKRLF 195 (374)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 2
>PLN02904 oxidoreductase
Probab=100.00 E-value=1.2e-35 Score=252.20 Aligned_cols=169 Identities=24% Similarity=0.423 Sum_probs=133.2
Q ss_pred cccccccHHHHHHCCCCCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecC
Q 048821 19 FDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNH 98 (188)
Q Consensus 19 ~~~~~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nH 98 (188)
+++++.||+.|+++|+.+||++||+|++++|............||||||+.+.++..|..++++|++||++||||||+||
T Consensus 9 ~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nH 88 (357)
T PLN02904 9 LDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVINH 88 (357)
T ss_pred hhccccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEeC
Confidence 47899999999999999999999999999885311001123579999999876334577899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC----CCCCCCChHHHH
Q 048821 99 DIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN----PPPPEEYPEACR 174 (188)
Q Consensus 99 GI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~----~~wP~~~p~~fr 174 (188)
||+.++++++++++++||+||.|+|+++.........||+...........+|+|.+.....|. +.||+ .+++||
T Consensus 89 GI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~-~~p~fr 167 (357)
T PLN02904 89 GIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPS-NPPCYK 167 (357)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcccccccCcc-cchHHH
Confidence 9999999999999999999999999998643333345666543323344568999876543332 37996 456799
Q ss_pred HHHHHHHHHHhhcC
Q 048821 175 YAFLHLLNNIQRRA 188 (188)
Q Consensus 175 ~~~~~Y~~~~~~La 188 (188)
+++++|+++|.+|+
T Consensus 168 ~~~~~y~~~~~~l~ 181 (357)
T PLN02904 168 EKVGKYAEATHVLH 181 (357)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 3
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.1e-35 Score=252.81 Aligned_cols=164 Identities=23% Similarity=0.360 Sum_probs=133.4
Q ss_pred cccHHHHHHCCCCCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 23 KAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 23 ~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.++||.|+++|+++||++|++|++++|...........+||||||+.+.+ + .++.+++++|++||++||||||+||||
T Consensus 14 ~~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi 93 (361)
T PLN02758 14 IDDVQELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGI 93 (361)
T ss_pred cccHHHHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCC
Confidence 45699999999999999999999998843200012345799999998864 3 456778999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCChHHHHH
Q 048821 101 PQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYPEACRY 175 (188)
Q Consensus 101 ~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~~fr~ 175 (188)
|.++++++++++++||+||.|+|+++.. .++..+||+...........||+|.|.++..|. +.||+ .|++||+
T Consensus 94 ~~~l~~~~~~~~~~FF~LP~eeK~k~~~-~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~-~~~~fr~ 171 (361)
T PLN02758 94 ELELLEEIEKVAREFFMLPLEEKQKYPM-APGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPT-KPARFSE 171 (361)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcc-cCCCccccCcccccccccccCeeEEEEeeccCccccccccCcc-ccHHHHH
Confidence 9999999999999999999999999864 334567997655444455679999998876552 37996 4668999
Q ss_pred HHHHHHHHHhhcC
Q 048821 176 AFLHLLNNIQRRA 188 (188)
Q Consensus 176 ~~~~Y~~~~~~La 188 (188)
++++|+++|.+|+
T Consensus 172 ~~~~y~~~~~~l~ 184 (361)
T PLN02758 172 TLEVYSREIRELC 184 (361)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 4
>PLN02216 protein SRG1
Probab=100.00 E-value=3e-35 Score=249.80 Aligned_cols=162 Identities=23% Similarity=0.382 Sum_probs=130.5
Q ss_pred ccHHHHHHC-CCCCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCH
Q 048821 24 AGVKGLVDS-GIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQ 102 (188)
Q Consensus 24 ~~v~~l~~~-~~~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~ 102 (188)
..|+.|+.+ ++..||++||+|++++|.... ......+||||||+.+.++..+.+++++|++||++||||||+|||||.
T Consensus 15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~-~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~ 93 (357)
T PLN02216 15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAV-DSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDS 93 (357)
T ss_pred hhHHHHHhcCCCCCCCHhhCcCcccCCcccc-ccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCH
Confidence 458999876 889999999999999874321 011224799999998864323457899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCChHHHHHHH
Q 048821 103 DIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYPEACRYAF 177 (188)
Q Consensus 103 ~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~~fr~~~ 177 (188)
++++++++++++||+||.|+|+++.. .++...||+...........||+|.|.+...|. +.||. .|+.||+++
T Consensus 94 ~li~~~~~~~~~FF~LP~eeK~k~~~-~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~-~p~~fr~~~ 171 (357)
T PLN02216 94 SFLDKVKSEIQDFFNLPMEEKKKLWQ-RPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPK-LPLPFRDTL 171 (357)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhhc-CCCCccccCccccccccccCCceeeeeeeccCcccccchhccc-chHHHHHHH
Confidence 99999999999999999999999864 334567897655444456789999998765442 37996 677899999
Q ss_pred HHHHHHHhhcC
Q 048821 178 LHLLNNIQRRA 188 (188)
Q Consensus 178 ~~Y~~~~~~La 188 (188)
++|+++|.+|+
T Consensus 172 ~~y~~~~~~l~ 182 (357)
T PLN02216 172 ETYSAEVKSIA 182 (357)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 5
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=4.3e-34 Score=243.19 Aligned_cols=168 Identities=26% Similarity=0.482 Sum_probs=134.5
Q ss_pred cccccccHHHHHHCCCCCCCCcccCCCCCCCccc-cccCCCCCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEe
Q 048821 19 FDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEK-SDLRHAHFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQV 95 (188)
Q Consensus 19 ~~~~~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~-~~~~~~~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v 95 (188)
+....+.|+.|++++..+||++||+|++++|... ........+||||||+.+.+ + ..|.+++++|++||++||||||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l 87 (362)
T PLN02393 8 WPEPIVRVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQV 87 (362)
T ss_pred CCCccchHHHHHhcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEE
Confidence 3445578999999999999999999999988531 10012446799999999864 3 5688999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCCh
Q 048821 96 VNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYP 170 (188)
Q Consensus 96 ~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p 170 (188)
+||||+.++++++++++++||+||.|+|+++.. .+...+||+...........||+|.|++...|. +.||. .|
T Consensus 88 ~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~-~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~-~~ 165 (362)
T PLN02393 88 VNHGVRPELMDRAREAWREFFHLPLEVKQRYAN-SPATYEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPS-LP 165 (362)
T ss_pred EeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhc-ccCcccccccccccccccccCchhheeeeecCccccchhhCcc-cc
Confidence 999999999999999999999999999999863 334567996443333345689999987754331 37996 56
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 048821 171 EACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 171 ~~fr~~~~~Y~~~~~~La 188 (188)
++||+++++|+++|.+|+
T Consensus 166 ~~fr~~~~~y~~~~~~la 183 (362)
T PLN02393 166 PSCRELIEEYGEEVVKLC 183 (362)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 689999999999999874
No 6
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=3.9e-33 Score=237.23 Aligned_cols=164 Identities=27% Similarity=0.425 Sum_probs=129.4
Q ss_pred ccHHHHHHCCCCCCCCcccCCCCCCCcccccc----CCCCCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEeec
Q 048821 24 AGVKGLVDSGIQSVPKFFVAPSEETCNEKSDL----RHAHFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVVN 97 (188)
Q Consensus 24 ~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~~----~~~~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~n 97 (188)
..|+.|+++++.+||+.|++|++.+|...... ......||||||+.+.. + ..|..++++|++||++||||||+|
T Consensus 6 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~n 85 (360)
T PLN03178 6 PRVEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVG 85 (360)
T ss_pred hhHHHHHhcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEc
Confidence 45899999999999999999998887432100 01345799999998864 3 458899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChhhhhcccccCC-CCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCChH
Q 048821 98 HDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDK-TKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYPE 171 (188)
Q Consensus 98 HGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~-~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~ 171 (188)
|||+.++++++++++++||+||.|+|+++..... +..+||+........+..||+|.+.+...|. +.||+. ++
T Consensus 86 HGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~-~p 164 (360)
T PLN03178 86 HGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKT-PP 164 (360)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCCC-ch
Confidence 9999999999999999999999999999864322 2467997644333345679999876643331 379964 45
Q ss_pred HHHHHHHHHHHHHhhcC
Q 048821 172 ACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 172 ~fr~~~~~Y~~~~~~La 188 (188)
+||+++++|+++|.+|+
T Consensus 165 ~fr~~~~~y~~~~~~l~ 181 (360)
T PLN03178 165 DYVPATSEYSRSLRSLA 181 (360)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999999999874
No 7
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.3e-33 Score=235.32 Aligned_cols=163 Identities=28% Similarity=0.474 Sum_probs=126.5
Q ss_pred ccccHHHHHHCCCCCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCC
Q 048821 22 TKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIP 101 (188)
Q Consensus 22 ~~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~ 101 (188)
.+-.||+|. +++..||+.|++|.+++|..... .....+||||||+.+.+ .++.+++++|++||++||||||+||||+
T Consensus 4 ~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~iPvIDls~~~~-~~~~~~~~~l~~A~~~~GFf~v~nHGI~ 80 (348)
T PLN02912 4 SKLLVSDIA-SVVDHVPSNYVRPVSDRPNMSEV-ETSGDSIPLIDLRDLHG-PNRADIINQFAHACSSYGFFQIKNHGVP 80 (348)
T ss_pred chhHHHHHh-cCCCCCCHHhcCCchhccccccc-cccCCCCCeEECcccCC-cCHHHHHHHHHHHHHHCCEEEEEeCCCC
Confidence 345688887 88999999999999888742210 11345799999998753 2477899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC----CCCCCCChHHHHHHH
Q 048821 102 QDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN----PPPPEEYPEACRYAF 177 (188)
Q Consensus 102 ~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~----~~wP~~~p~~fr~~~ 177 (188)
.++++++++++++||+||.|+|++++...+....+|...+........+|+|.+.+...|. +.||. .|++||+++
T Consensus 81 ~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~-~~~~fr~~~ 159 (348)
T PLN02912 81 EETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPS-TPISFREVT 159 (348)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccccccccccCCchheEEEeecCcccccccCcc-hhHHHHHHH
Confidence 9999999999999999999999996544433333444333322344679999987754432 37996 466899999
Q ss_pred HHHHHHHhhcC
Q 048821 178 LHLLNNIQRRA 188 (188)
Q Consensus 178 ~~Y~~~~~~La 188 (188)
++|+++|.+|+
T Consensus 160 ~~y~~~~~~l~ 170 (348)
T PLN02912 160 AEYATSVRALV 170 (348)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 8
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=1.1e-32 Score=233.99 Aligned_cols=152 Identities=26% Similarity=0.387 Sum_probs=120.6
Q ss_pred CCCCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCCc-hhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHH
Q 048821 33 GIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKD-GVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIES 111 (188)
Q Consensus 33 ~~~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~ 111 (188)
|+.+||.+|++|++++|.... ......||||||+.+.++ ..|.+++++|++||++||||||+||||+.+++++++++
T Consensus 11 ~~~~~p~~~~~~~~~~~~~~~--~~~~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~ 88 (358)
T PLN02515 11 GESTLQSSFVRDEDERPKVAY--NQFSDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRL 88 (358)
T ss_pred CCCcCCHHhcCCchhccCccc--cccCCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHH
Confidence 467999999999988874321 123346999999988643 56788999999999999999999999999999999999
Q ss_pred HHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCChHHHHHHHHHHHHHHhh
Q 048821 112 IRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYPEACRYAFLHLLNNIQR 186 (188)
Q Consensus 112 ~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~~fr~~~~~Y~~~~~~ 186 (188)
+++||+||.|+|+++.... ...+||............||+|.|.+...|. +.||+ .+++||+++++|+++|.+
T Consensus 89 ~~~FF~LP~eeK~k~~~~~-~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~-~~~~fr~~~~~y~~~~~~ 166 (358)
T PLN02515 89 ARDFFALPAEEKLRFDMSG-GKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPD-KPEGWRAVTEEYSEKLMG 166 (358)
T ss_pred HHHHhcCCHHHHhhhCcCC-CCccCcccccccccccccCceeeeccccCcccccccccccc-cchHHHHHHHHHHHHHHH
Confidence 9999999999999975433 3357886433333345689999987653331 37996 455799999999999998
Q ss_pred cC
Q 048821 187 RA 188 (188)
Q Consensus 187 La 188 (188)
|+
T Consensus 167 L~ 168 (358)
T PLN02515 167 LA 168 (358)
T ss_pred HH
Confidence 74
No 9
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.3e-32 Score=232.23 Aligned_cols=155 Identities=30% Similarity=0.536 Sum_probs=122.5
Q ss_pred HHHHHCCC--CCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHH
Q 048821 27 KGLVDSGI--QSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDI 104 (188)
Q Consensus 27 ~~l~~~~~--~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~l 104 (188)
+.|+++|+ .+||+.||+|++++|.... ...+.+||||||+.. .+.+++++|++||++||||||+||||+.++
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~--~~~~~~iPvIDls~~----~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l 76 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPESERPRLSE--VSTCENVPVIDLGSP----DRAQVVQQIGDACRRYGFFQVINHGVSAEL 76 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCchhcccccc--cccCCCCCeEECCCc----cHHHHHHHHHHHHHhCCEEEEEcCCCCHHH
Confidence 35888987 8999999999988884211 123467999999874 477899999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC----CCCCCCChHHHHHHHHHH
Q 048821 105 ADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN----PPPPEEYPEACRYAFLHL 180 (188)
Q Consensus 105 i~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~----~~wP~~~p~~fr~~~~~Y 180 (188)
++++++.+++||+||.|+|+++....+....+|+...........+|+|.+.+...|. +.||+ .|++||+++++|
T Consensus 77 ~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~-~~~~fr~~~~~y 155 (337)
T PLN02639 77 VEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPS-NPPSFKEIVSTY 155 (337)
T ss_pred HHHHHHHHHHHhcCCHHHHhhhhccCCCCccccccccccccCcccCchheEEeeecCCcccchhCcc-cchHHHHHHHHH
Confidence 9999999999999999999997644333333443333333345679999988765442 36996 466899999999
Q ss_pred HHHHhhcC
Q 048821 181 LNNIQRRA 188 (188)
Q Consensus 181 ~~~~~~La 188 (188)
+++|.+|+
T Consensus 156 ~~~~~~l~ 163 (337)
T PLN02639 156 CREVRELG 163 (337)
T ss_pred HHHHHHHH
Confidence 99999875
No 10
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=8.5e-33 Score=234.70 Aligned_cols=149 Identities=20% Similarity=0.278 Sum_probs=117.0
Q ss_pred HCCCCCCCCcccCCCCCCC--ccccccCCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHH
Q 048821 31 DSGIQSVPKFFVAPSEETC--NEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEV 108 (188)
Q Consensus 31 ~~~~~~vP~~fi~p~~~~p--~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~ 108 (188)
.+++.+||++||+|+++++ ...........+||||||+.. .++++|++||++||||||+||||+.++++++
T Consensus 24 ~~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~-------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~ 96 (358)
T PLN02254 24 FTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDP-------NALTLIGHACETWGVFQVTNHGIPLSLLDDI 96 (358)
T ss_pred hhhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCH-------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHH
Confidence 3345689999999999883 221100123457999999742 3789999999999999999999999999999
Q ss_pred HHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC----CCCCCCChHHHHHHHHHHHHHH
Q 048821 109 IESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN----PPPPEEYPEACRYAFLHLLNNI 184 (188)
Q Consensus 109 ~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~----~~wP~~~p~~fr~~~~~Y~~~~ 184 (188)
++++++||+||.|+|+++.. ......||+.........+.||+|+|.+...|. +.||+ .+++||+++++|+++|
T Consensus 97 ~~~~~~FF~LP~EeK~k~~~-~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~-~~~~fr~~~~~Y~~~~ 174 (358)
T PLN02254 97 ESQTRRLFSLPAQRKLKAAR-SPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQ-DHTKFCDVMEEYQKEM 174 (358)
T ss_pred HHHHHHHHcCCHHHHHhhcc-CCCCcccccccccccccCCCCceeeEEeecCccccchhhCCC-CchHHHHHHHHHHHHH
Confidence 99999999999999999853 344567998755433445679999998865442 37996 4567999999999999
Q ss_pred hhcC
Q 048821 185 QRRA 188 (188)
Q Consensus 185 ~~La 188 (188)
.+|+
T Consensus 175 ~~L~ 178 (358)
T PLN02254 175 KKLA 178 (358)
T ss_pred HHHH
Confidence 9875
No 11
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.98 E-value=3.8e-32 Score=230.10 Aligned_cols=161 Identities=19% Similarity=0.282 Sum_probs=124.6
Q ss_pred cHHHHHHCCCCCCCCcccCCCCCCCccccc-cCCCCCCcceeeCCCCCC-chhHHHHHHHHHHHHhhccceEeecCCCCH
Q 048821 25 GVKGLVDSGIQSVPKFFVAPSEETCNEKSD-LRHAHFNVPIIDLRDIDK-DGVRCEIVKEIGIASSKWGFFQVVNHDIPQ 102 (188)
Q Consensus 25 ~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~-~~~~~~~iPvIDls~l~~-~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~ 102 (188)
-||+|++++ ..||+.|++|+..++..... ......+||||||+.+.+ +..+.+.+++|++||++||||||+|||||.
T Consensus 8 ~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~ 86 (348)
T PLN00417 8 TVQEVVAAG-EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITE 86 (348)
T ss_pred hHHHHHhCC-CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCH
Confidence 388998876 58999999999886421000 012345799999998764 333444569999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCChHHHHHHH
Q 048821 103 DIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYPEACRYAF 177 (188)
Q Consensus 103 ~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~~fr~~~ 177 (188)
++++++++.+++||+||.|+|+++... .+..+||+...........||+|.+++...|. +.||. .|++||+++
T Consensus 87 ~l~~~~~~~~~~FF~LP~eeK~~~~~~-~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~-~~~~fr~~~ 164 (348)
T PLN00417 87 AFLDKIYKLTKQFFALPTEEKQKCARE-IGSIQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQ-VPVGFRETL 164 (348)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcC-CCCccccccccccccCCCcCccceeecccCCccccccccccc-ccHHHHHHH
Confidence 999999999999999999999998643 33567997644333345679999887765442 37996 567899999
Q ss_pred HHHHHHHhhcC
Q 048821 178 LHLLNNIQRRA 188 (188)
Q Consensus 178 ~~Y~~~~~~La 188 (188)
++|+.+|.+|+
T Consensus 165 ~~y~~~~~~l~ 175 (348)
T PLN00417 165 HEYTMKQRLVI 175 (348)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 12
>PLN02276 gibberellin 20-oxidase
Probab=99.97 E-value=5.9e-32 Score=229.99 Aligned_cols=148 Identities=22% Similarity=0.330 Sum_probs=119.2
Q ss_pred CCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHH
Q 048821 35 QSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESI 112 (188)
Q Consensus 35 ~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~ 112 (188)
++||+.|++|.+++|... ....+||||||+.+.+ + ..+.+++++|++||++||||||+|||||.++++++++++
T Consensus 18 ~~vp~~~~~~~~~~p~~~----~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~ 93 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSAA----VPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYM 93 (361)
T ss_pred CCCCHHhcCCccccCCCC----CcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHH
Confidence 579999999999887521 2345799999998863 3 567889999999999999999999999999999999999
Q ss_pred HHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC------------CCCCCCChHHHHHHHHHH
Q 048821 113 RRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN------------PPPPEEYPEACRYAFLHL 180 (188)
Q Consensus 113 ~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~------------~~wP~~~p~~fr~~~~~Y 180 (188)
++||+||.|+|+++. ..++..+||+...........||+|.|.++..|. +.||.+.+ +||+++++|
T Consensus 94 ~~FF~LP~eeK~k~~-~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~fr~~~~~y 171 (361)
T PLN02276 94 DAFFKLPLSEKQRAQ-RKPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFE-QFGKVYQEY 171 (361)
T ss_pred HHHHcCCHHHHHhhc-cCCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchH-HHHHHHHHH
Confidence 999999999999985 3345578998755433445679999998864331 13554333 699999999
Q ss_pred HHHHhhcC
Q 048821 181 LNNIQRRA 188 (188)
Q Consensus 181 ~~~~~~La 188 (188)
+.+|.+|+
T Consensus 172 ~~~~~~l~ 179 (361)
T PLN02276 172 CEAMKTLS 179 (361)
T ss_pred HHHHHHHH
Confidence 99999874
No 13
>PLN02704 flavonol synthase
Probab=99.97 E-value=1.4e-31 Score=225.74 Aligned_cols=159 Identities=23% Similarity=0.338 Sum_probs=125.5
Q ss_pred ccHHHHHHCC--CCCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCC
Q 048821 24 AGVKGLVDSG--IQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIP 101 (188)
Q Consensus 24 ~~v~~l~~~~--~~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~ 101 (188)
.+|+.+++++ ..+||++|++|++++|..... .....+||||||+.. ++.+++++|++||++||||||+||||+
T Consensus 4 ~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~-~~~~~~iPvIDls~~----~~~~~~~~l~~Ac~~~GFf~l~nHGI~ 78 (335)
T PLN02704 4 ERVQAIASSSLLKETIPEEFIRSEKEQPAITTF-HGVDPQVPTIDLSDP----DEEKLTRLIAEASKEWGMFQIVNHGIP 78 (335)
T ss_pred hhHHHHHhCCCCcCCCCHHHcCCcccccccccc-cccCCCCCeEECCCc----cHHHHHHHHHHHHHHcCEEEEEcCCCC
Confidence 3688898876 789999999999998854210 123557999999974 356789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhcccccC-CCCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCChHHHHH
Q 048821 102 QDIADEVIESIRRFNEQPNHVKEKFYSRD-KTKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYPEACRY 175 (188)
Q Consensus 102 ~~li~~~~~~~~~FF~LP~eeK~~~~~~~-~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~~fr~ 175 (188)
.++++++++.+++||+||.|+|+++.... ....+||+...........+|+|.+.....|. +.||+. +++||+
T Consensus 79 ~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~-~p~fr~ 157 (335)
T PLN02704 79 SEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKN-PPSYRE 157 (335)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCcccchhhCccc-cchhHH
Confidence 99999999999999999999999986432 22357897654433456678999876543332 279964 457999
Q ss_pred HHHHHHHHHhhcC
Q 048821 176 AFLHLLNNIQRRA 188 (188)
Q Consensus 176 ~~~~Y~~~~~~La 188 (188)
++++|+++|.+|+
T Consensus 158 ~~~~y~~~~~~l~ 170 (335)
T PLN02704 158 VNEEYAKYLRGVA 170 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 14
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=99.97 E-value=5e-31 Score=220.89 Aligned_cols=128 Identities=33% Similarity=0.509 Sum_probs=110.1
Q ss_pred CCCcceeeCCCCCCc-hhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceee
Q 048821 59 HFNVPIIDLRDIDKD-GVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRF 137 (188)
Q Consensus 59 ~~~iPvIDls~l~~~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy 137 (188)
..+||||||+.+.++ ..+.+++++|++||++||||||+|||||.+++++|++.+++||+||.|||+++.... ....||
T Consensus 15 ~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~-~~~~gY 93 (322)
T KOG0143|consen 15 ELDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEP-GKYRGY 93 (322)
T ss_pred CCCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCC-CCcccc
Confidence 567999999987643 348889999999999999999999999999999999999999999999999987443 356899
Q ss_pred ccCCccCcCCCCCccccccccccCC-----CCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 138 NSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 138 ~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
++.+........+|+|++.+...|. ..||+ .|..||+++++|.+++.+|+
T Consensus 94 ~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~-~p~~~re~~~eY~~~~~~L~ 148 (322)
T KOG0143|consen 94 GTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPE-GPPEFRETMEEYAKEVMELS 148 (322)
T ss_pred cccccccccccccchhheeeeccCccccCcccCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 9887664557899999998877663 27996 78889999999999999874
No 15
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.97 E-value=8.3e-31 Score=221.85 Aligned_cols=147 Identities=22% Similarity=0.446 Sum_probs=116.1
Q ss_pred CCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHH
Q 048821 35 QSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRR 114 (188)
Q Consensus 35 ~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~ 114 (188)
.+||..|++|++++|.... ......||||||+.+.. .++.+++++|++||++||||||+||||+.++++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~~~iPvIDls~~~~-~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~ 78 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHL--TNSDEEIPVIDLSVSTS-HDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKE 78 (345)
T ss_pred CCCCHHHcCCchhccCccc--cccCCCCCeEECCCCCc-ccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4799999999988885321 12245799999998532 45778999999999999999999999999999999999999
Q ss_pred hhCCChhhhhcccccCCCCceeeccCCccCcCCCCCcccccccccc-----C-------------CCCCCCCChHHHHHH
Q 048821 115 FNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMA-----P-------------NPPPPEEYPEACRYA 176 (188)
Q Consensus 115 FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~-----p-------------~~~wP~~~p~~fr~~ 176 (188)
||+||.|+|+++.. +....+||..... .....||+|.|.+... | .+.||. .|++||++
T Consensus 79 FF~LP~eeK~~~~~-~~~~~~GY~~~~~--~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~-~~~~fr~~ 154 (345)
T PLN02750 79 FFDQTTEEKRKVKR-DEVNPMGYHDSEH--TKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQ-NPSHFREL 154 (345)
T ss_pred HHcCCHHHHHhhcc-CCCCccCcCcccc--cccCCCceeEEEEeecccccccccccccccccccccccCCC-CcHHHHHH
Confidence 99999999999853 3334579964321 2345699999987531 1 137996 46689999
Q ss_pred HHHHHHHHhhcC
Q 048821 177 FLHLLNNIQRRA 188 (188)
Q Consensus 177 ~~~Y~~~~~~La 188 (188)
+++|+++|.+|+
T Consensus 155 ~~~y~~~~~~l~ 166 (345)
T PLN02750 155 CQEYARQVEKLA 166 (345)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 16
>PTZ00273 oxidase reductase; Provisional
Probab=99.96 E-value=4.3e-29 Score=209.53 Aligned_cols=128 Identities=21% Similarity=0.323 Sum_probs=103.8
Q ss_pred CCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceee
Q 048821 60 FNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRF 137 (188)
Q Consensus 60 ~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy 137 (188)
.+||||||+.+.+ + ..+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++........+||
T Consensus 4 ~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~GY 83 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRGY 83 (320)
T ss_pred CCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCCC
Confidence 4699999998864 3 4678899999999999999999999999999999999999999999999999865444456799
Q ss_pred ccCCcc--CcCCCCCcccccccccc-C--------------CCCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 138 NSNFDL--YKARFANWRDTLSCLMA-P--------------NPPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 138 ~~~~~~--~~~~~~dw~E~~~~~~~-p--------------~~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
+..... ......||+|.|.++.. | .+.||... ++||+++++|+++|.+|+
T Consensus 84 ~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~-p~fr~~~~~y~~~~~~l~ 150 (320)
T PTZ00273 84 GAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQV-EGWMELMETHYRDMQALA 150 (320)
T ss_pred CCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcc-hHHHHHHHHHHHHHHHHH
Confidence 765421 22345799999987531 1 23799644 479999999999998874
No 17
>PLN02485 oxidoreductase
Probab=99.96 E-value=1.6e-28 Score=206.81 Aligned_cols=127 Identities=19% Similarity=0.277 Sum_probs=102.1
Q ss_pred CCcceeeCCCCCC--------c-hhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccC
Q 048821 60 FNVPIIDLRDIDK--------D-GVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRD 130 (188)
Q Consensus 60 ~~iPvIDls~l~~--------~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~ 130 (188)
..||||||+.+.. + ..+.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++....
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~ 85 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTP 85 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccC
Confidence 4699999998742 1 246779999999999999999999999999999999999999999999999976443
Q ss_pred CCCceeeccCCccCcCCCCCccccccccc---------------cCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 131 KTKKVRFNSNFDLYKARFANWRDTLSCLM---------------APNPPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 131 ~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~---------------~p~~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
....+||.........+..||+|.|.+.. .| +.||+ .+++||+++++|+++|.+|+
T Consensus 86 ~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~-n~wP~-~~~~fr~~~~~y~~~~~~l~ 156 (329)
T PLN02485 86 AAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGP-NQWPE-NPQEFKALMEEYIKLCTDLS 156 (329)
T ss_pred CCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCC-CCCCC-ccHHHHHHHHHHHHHHHHHH
Confidence 33457997654333345679999887642 12 37996 45679999999999999874
No 18
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=99.95 E-value=4.4e-28 Score=197.53 Aligned_cols=127 Identities=24% Similarity=0.349 Sum_probs=109.0
Q ss_pred CCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceee
Q 048821 60 FNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRF 137 (188)
Q Consensus 60 ~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy 137 (188)
..||+|||+.+.+ + .+|..++++|++||++||||||+||||+.++++++++++++||+||.|||+++.+......+||
T Consensus 4 ~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rGY 83 (322)
T COG3491 4 RDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRGY 83 (322)
T ss_pred CcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCcccccc
Confidence 4699999999885 4 6899999999999999999999999999999999999999999999999999876554457899
Q ss_pred ccCCccCcCCCCCcccccccccc------------C---CCCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 138 NSNFDLYKARFANWRDTLSCLMA------------P---NPPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 138 ~~~~~~~~~~~~dw~E~~~~~~~------------p---~~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
.........+..||||.++++.. | .+.|| .+| +||+++.+|+++|.+++
T Consensus 84 ~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip-~~r~~ll~~~~~~~~~~ 147 (322)
T COG3491 84 TPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIP-GLRDALLQYYRAMTAVG 147 (322)
T ss_pred ccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cch-hHHHHHHHHHHHHHHHH
Confidence 87765556667799999988631 1 13799 688 59999999999998864
No 19
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.95 E-value=9.8e-28 Score=174.34 Aligned_cols=111 Identities=24% Similarity=0.397 Sum_probs=89.9
Q ss_pred HHHHHHCCCCCCCCcccCCCCCCCccccccCCCCCCcceeeCCCCCCc-hhHHHHHHHHHHHHhhccceEeecCCCCHHH
Q 048821 26 VKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKD-GVRCEIVKEIGIASSKWGFFQVVNHDIPQDI 104 (188)
Q Consensus 26 v~~l~~~~~~~vP~~fi~p~~~~p~~~~~~~~~~~~iPvIDls~l~~~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~l 104 (188)
|+.|... ..+|..|+++..++|.... .....+||||||+.+.++ ..+.+++++|++||++||||||+||||+.++
T Consensus 6 ~~~l~~~--~~~p~~~~~~~~~~p~~~~--~~~~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~el 81 (120)
T PLN03176 6 LTALAEE--KTLQASFVRDEDERPKVAY--NQFSNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKL 81 (120)
T ss_pred HHHHhcc--CCCCHhhcCChhhCcCccc--cccCCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
Confidence 3444433 6899999999998884321 122347999999988643 4577899999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCC
Q 048821 105 ADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNF 141 (188)
Q Consensus 105 i~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~ 141 (188)
++++++.+++||+||.++|+++.. .+++..||+..+
T Consensus 82 id~~~~~~~~FF~LP~e~K~k~~~-~~~~~~gy~~~~ 117 (120)
T PLN03176 82 VSEMTTLAKEFFALPPEEKLRFDM-SGGKKGGFIVSS 117 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHhccc-CCCccCCcchhc
Confidence 999999999999999999999864 445667997654
No 20
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.95 E-value=5.4e-28 Score=174.40 Aligned_cols=95 Identities=27% Similarity=0.510 Sum_probs=81.1
Q ss_pred cceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCC
Q 048821 62 VPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNF 141 (188)
Q Consensus 62 iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~ 141 (188)
||||||+. ....+..++++|++||++||||||+||||+.++++++++++++||+||.|+|+++. +. ...+||....
T Consensus 1 iPvIDls~--~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~-~~-~~~~Gy~~~~ 76 (116)
T PF14226_consen 1 IPVIDLSP--DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYA-RS-PSYRGYSPPG 76 (116)
T ss_dssp --EEEHGG--CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHB-CC-TTCSEEEESE
T ss_pred CCeEECCC--CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhc-CC-CCCcccccCC
Confidence 79999997 11678999999999999999999999999999999999999999999999999984 33 4788998876
Q ss_pred ccCcCC-CCCcccccccccc
Q 048821 142 DLYKAR-FANWRDTLSCLMA 160 (188)
Q Consensus 142 ~~~~~~-~~dw~E~~~~~~~ 160 (188)
...... ..||+|+|++...
T Consensus 77 ~~~~~~~~~d~~E~~~~~~~ 96 (116)
T PF14226_consen 77 SESTDGGKPDWKESFNIGPD 96 (116)
T ss_dssp EECCTTCCCCSEEEEEEECC
T ss_pred ccccCCCCCCceEEeEEECC
Confidence 554444 8999999998765
No 21
>PLN02997 flavonol synthase
Probab=99.95 E-value=1.5e-27 Score=200.33 Aligned_cols=120 Identities=27% Similarity=0.429 Sum_probs=99.2
Q ss_pred CCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeec
Q 048821 59 HFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFN 138 (188)
Q Consensus 59 ~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~ 138 (188)
...||||||+.+ ++.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++.. . ...+||.
T Consensus 30 ~~~IPvIDls~~----~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~-~-~~~~GY~ 103 (325)
T PLN02997 30 AVDVPVVDLSVS----DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAK-E-EDFEGYK 103 (325)
T ss_pred CCCCCeEECCCC----CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcc-C-CCccccC
Confidence 457999999975 356799999999999999999999999999999999999999999999999753 2 3467997
Q ss_pred cCCccCcCCCCCccccccccccCC-----CCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 139 SNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 139 ~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
.... .+..+|+|.+.....|. +.||+ .|++||+++++|+++|.+|+
T Consensus 104 ~~~~---~~~~d~~e~~~~~~~p~~~~~~n~wP~-~~~~fr~~~~~y~~~~~~l~ 154 (325)
T PLN02997 104 RNYL---GGINNWDEHLFHRLSPPSIINYKYWPK-NPPQYREVTEEYTKHMKRLT 154 (325)
T ss_pred cccc---cCCCCccceeEeeecCccccccccCCC-CcchHHHHHHHHHHHHHHHH
Confidence 6532 45679999876544342 37996 45579999999999999874
No 22
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.95 E-value=1.5e-27 Score=201.06 Aligned_cols=123 Identities=22% Similarity=0.271 Sum_probs=98.0
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeecc
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNS 139 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~ 139 (188)
..||+|||+.. .+..++++|++||++||||||+||||+.++++++++++++||+||.|+|+++. .. ...+||..
T Consensus 13 ~~iP~IDl~~~----~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~-~~-~~~~GY~~ 86 (332)
T PLN03002 13 SSLNCIDLAND----DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVL-RN-EKHRGYTP 86 (332)
T ss_pred CCCCEEeCCch----hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhc-cC-CCCCCcCc
Confidence 47999999852 35678999999999999999999999999999999999999999999999975 33 34689986
Q ss_pred CCccCc----CCCCCcccccccccc-C------------CCCCCCC-ChHHHHHHHHHHHHHHhhcC
Q 048821 140 NFDLYK----ARFANWRDTLSCLMA-P------------NPPPPEE-YPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 140 ~~~~~~----~~~~dw~E~~~~~~~-p------------~~~wP~~-~p~~fr~~~~~Y~~~~~~La 188 (188)
...... ....||+|.|+++.. | .+.||.. .+++||+++++|+++|.+|+
T Consensus 87 ~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~ 153 (332)
T PLN03002 87 VLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVS 153 (332)
T ss_pred ccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHH
Confidence 432211 123699999987632 1 1369963 23479999999999999874
No 23
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=99.95 E-value=1.6e-27 Score=199.95 Aligned_cols=121 Identities=20% Similarity=0.343 Sum_probs=98.9
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeecc
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNS 139 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~ 139 (188)
.+||||||+.+.+ .++.+++++|++||++||||||+|||||.++++++++++++||+||.|+|+++.. ...||..
T Consensus 5 ~~iPvIDls~~~~-~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~----~~~gy~~ 79 (321)
T PLN02299 5 ESFPVIDMEKLNG-EERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMV----ASKGLEG 79 (321)
T ss_pred CCCCEEECcCCCc-ccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhccc----CCCCccc
Confidence 4699999998753 3467799999999999999999999999999999999999999999999999642 2356654
Q ss_pred CCccCcCCCCCccccccccccCC---CCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 140 NFDLYKARFANWRDTLSCLMAPN---PPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 140 ~~~~~~~~~~dw~E~~~~~~~p~---~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
... .....||+|.|.+...|. ..||+ .|++||+++++|+++|.+|+
T Consensus 80 ~~~--~~~~~d~ke~~~~~~~~~~~~~~wP~-~~~~fr~~~~~y~~~~~~l~ 128 (321)
T PLN02299 80 VQT--EVEDLDWESTFFLRHLPESNLADIPD-LDDEYRKVMKDFALELEKLA 128 (321)
T ss_pred ccc--cCCCcCHHHHcccccCCccccccCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 321 224569999998865442 36996 56789999999999999874
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=99.94 E-value=1.7e-26 Score=192.16 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=94.3
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSN 140 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~ 140 (188)
+||||||+.+.. ..+.+++++|++||++||||||+|||||.++++++++.+++||+||.++|.. . .... .++...
T Consensus 2 ~iPvIDls~~~~-~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~-~-~~~~--~~~~~~ 76 (303)
T PLN02403 2 EIPVIDFDQLDG-EKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFY-E-SEIA--KALDNE 76 (303)
T ss_pred CCCeEeCccCCc-ccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhh-c-cccc--Cccccc
Confidence 599999998753 3577899999999999999999999999999999999999999999999862 1 2111 112111
Q ss_pred CccCcCCCCCccccccccccCC---CCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 141 FDLYKARFANWRDTLSCLMAPN---PPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 141 ~~~~~~~~~dw~E~~~~~~~p~---~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
......||+|.|.++..|. +.||+ .|++||+++++|+++|.+|+
T Consensus 77 ---~~~~~~d~kE~~~~~~~p~~~~~~wP~-~~p~fr~~~~~y~~~~~~l~ 123 (303)
T PLN02403 77 ---GKTSDVDWESSFFIWHRPTSNINEIPN-LSEDLRKTMDEYIAQLIKLA 123 (303)
T ss_pred ---CCCCCccHhhhcccccCCccchhhCCC-CcHHHHHHHHHHHHHHHHHH
Confidence 1134569999999876553 36995 66689999999999999874
No 25
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=99.93 E-value=3.9e-26 Score=192.34 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=94.1
Q ss_pred CCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeec
Q 048821 59 HFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFN 138 (188)
Q Consensus 59 ~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~ 138 (188)
...||||||+.. +..++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ..+||+
T Consensus 24 ~~~iPvIDls~~-------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~---~~~Gy~ 93 (335)
T PLN02156 24 PVLIPVIDLTDS-------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP---DPFGYG 93 (335)
T ss_pred CCCCCcccCCCh-------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC---CCcccC
Confidence 346999999842 2457999999999999999999999999999999999999999999997422 345886
Q ss_pred cCCccCcCCCCCccccccccccCC-------CCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 139 SNFDLYKARFANWRDTLSCLMAPN-------PPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 139 ~~~~~~~~~~~dw~E~~~~~~~p~-------~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
.... ......+|+|.|.+...|. +.||. .|++||+++++|+++|.+|+
T Consensus 94 ~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~-~p~~fr~~~~~Y~~~~~~L~ 148 (335)
T PLN02156 94 TKRI-GPNGDVGWLEYILLNANLCLESHKTTAVFRH-TPAIFREAVEEYMKEMKRMS 148 (335)
T ss_pred cccc-CCCCCCCceeeEeeecCCccccccchhcCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 5321 1223469999987764321 26985 66789999999999999875
No 26
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.92 E-value=4.8e-25 Score=186.17 Aligned_cols=122 Identities=16% Similarity=0.265 Sum_probs=88.0
Q ss_pred CCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCC--cee
Q 048821 59 HFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTK--KVR 136 (188)
Q Consensus 59 ~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~--~~G 136 (188)
...||||||+.+ .+++|++||++||||||+|||||.++|+++++.+++||+||.|+|+++....... ..|
T Consensus 36 ~~~IPvIDls~~--------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g 107 (341)
T PLN02984 36 DIDIPVIDMECL--------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWG 107 (341)
T ss_pred cCCCCeEeCcHH--------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccC
Confidence 456999999864 3589999999999999999999999999999999999999999999975222111 112
Q ss_pred eccCCcc-----C--cCCCCCccccccccccCC---CCCCC--CChHHHHHHHHHHHHHHhhcC
Q 048821 137 FNSNFDL-----Y--KARFANWRDTLSCLMAPN---PPPPE--EYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 137 y~~~~~~-----~--~~~~~dw~E~~~~~~~p~---~~wP~--~~p~~fr~~~~~Y~~~~~~La 188 (188)
|...... . .....||+|+|.+...+. ..||. ..+++||+++++|+++|.+|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La 171 (341)
T PLN02984 108 TPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIA 171 (341)
T ss_pred cccccccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 2111110 0 112469999998864321 12321 123479999999999999875
No 27
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=99.91 E-value=1.5e-24 Score=180.46 Aligned_cols=116 Identities=20% Similarity=0.320 Sum_probs=89.5
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeecc
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNS 139 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~ 139 (188)
..||||||+.+. +.+++|++||++||||||+||||+.++++++++++++||+||.|+|+++.. ....+||..
T Consensus 4 ~~iPvIDls~~~------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~--~~~~~GY~~ 75 (300)
T PLN02365 4 VNIPTIDLEEFP------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTD--VILGSGYMA 75 (300)
T ss_pred CCCCEEEChhhH------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccC--CCCCCCCCC
Confidence 459999999762 245899999999999999999999999999999999999999999999642 223568875
Q ss_pred CCccCcCCCCCccccccccc--cCC--CCCCCC--ChHHHHHHHHHHHHHHhhcC
Q 048821 140 NFDLYKARFANWRDTLSCLM--APN--PPPPEE--YPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 140 ~~~~~~~~~~dw~E~~~~~~--~p~--~~wP~~--~p~~fr~~~~~Y~~~~~~La 188 (188)
.. ...+|+|.|.+.. .+. ..||.. .+++||+++++|+++|.+|+
T Consensus 76 ~~-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~ 125 (300)
T PLN02365 76 PS-----EVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLA 125 (300)
T ss_pred cC-----CCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHH
Confidence 43 1246888876642 111 134321 23479999999999999875
No 28
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.13 E-value=6.1e-11 Score=97.09 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=58.5
Q ss_pred HHHHHHHhhC-CChhhhhcccccCC-CCceeeccCCcc--CcCCCCCccccccccccCC-----CCCCCCChHHHHHHHH
Q 048821 108 VIESIRRFNE-QPNHVKEKFYSRDK-TKKVRFNSNFDL--YKARFANWRDTLSCLMAPN-----PPPPEEYPEACRYAFL 178 (188)
Q Consensus 108 ~~~~~~~FF~-LP~eeK~~~~~~~~-~~~~Gy~~~~~~--~~~~~~dw~E~~~~~~~p~-----~~wP~~~p~~fr~~~~ 178 (188)
|.+.+++||+ ||.|+|+++..... ...+||+..... ......||+|+|.+...|. +.||+ .|++||++++
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~-~~~~f~~~~~ 79 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPD-FPPDYREVVG 79 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCC-CcHHHHHHHH
Confidence 4578999997 99999999864321 235699654321 1234579999998865442 37996 4668999999
Q ss_pred HHHHHHhhcC
Q 048821 179 HLLNNIQRRA 188 (188)
Q Consensus 179 ~Y~~~~~~La 188 (188)
+|+++|.+|+
T Consensus 80 ~y~~~~~~l~ 89 (262)
T PLN03001 80 EYGDCMKALA 89 (262)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 29
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=79.68 E-value=4.5 Score=31.12 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=28.4
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||+++.... +..++++++.++.++..-+.+.|||+
T Consensus 120 ~v~v~~~~~~----g~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 120 KIPILPFRPA----GSVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CEeeecCCCC----CcHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5888887643 24567888888888888899999997
No 30
>PRK08130 putative aldolase; Validated
Probab=78.14 E-value=2.7 Score=33.16 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=29.1
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||+|++... +..++++++.+++.+...+.+.|||+
T Consensus 127 ~i~v~~y~~~----g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRP----GDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCC----ChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5888887543 34578888999999999999999996
No 31
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=76.08 E-value=2.2 Score=37.31 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=40.3
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCC
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQ 118 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 118 (188)
...-||.||++.+.. ..+.++..+..++.|++.|.|+ ||.+......+..++|...
T Consensus 46 G~~~IP~i~f~di~~----~~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~ 101 (416)
T PF07350_consen 46 GSSIIPEIDFADIEN----GGVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKA 101 (416)
T ss_dssp T--SS-EEEHHHHHC----T---HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeHHHHhC----CCCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHh
Confidence 445699999988742 2355778888899999999888 9999999988888888743
No 32
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=67.95 E-value=5.8 Score=31.55 Aligned_cols=36 Identities=14% Similarity=0.048 Sum_probs=28.3
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++++... ...++++.+.++..+...+.|.|||+
T Consensus 127 ~v~~~~y~~~----gs~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAAS----GTPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCC----CcHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 4777766532 24578888999999999999999997
No 33
>PRK06755 hypothetical protein; Validated
Probab=65.65 E-value=7 Score=30.96 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=27.3
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||||+...- ...++++.+.++.++...+.|-|||+
T Consensus 136 ~IPiv~~~~~----~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKK----FADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCc----hhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 5899987542 23566777777777888899999997
No 34
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=63.36 E-value=9.6 Score=30.08 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=26.4
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++++... .-.++++.+.++..+...+.+.|||+
T Consensus 124 ~i~~~~y~~~----gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 124 NVRCAEYATF----GTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CeeeccCCCC----ChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 4666655432 24467788888888888999999997
No 35
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=62.77 E-value=4.4 Score=30.93 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHh-hccceEeecCCC
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASS-KWGFFQVVNHDI 100 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~-~~GFF~v~nHGI 100 (188)
..||+|+.... ...++++.|.++.+ +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~----~~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPP----GSEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THST----TCHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeeccccc----cchhhhhhhhhhhcCCceEEeecCCce
Confidence 56999988653 23456788888888 889999999996
No 36
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=59.08 E-value=19 Score=29.75 Aligned_cols=36 Identities=19% Similarity=0.041 Sum_probs=27.7
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++.+... +..++++.+.++.++..-+.+.|||+
T Consensus 177 ~i~vvp~~~p----Gs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMVP----GTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcCC----CCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 3777766442 34578888999988888899999997
No 37
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=58.51 E-value=12 Score=28.68 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=26.4
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++ .... ...++++.+.+++.+.-.+.+.|||+
T Consensus 115 ~ipv~-~~~~----~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDI----GSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCC----CCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 58888 3222 23567788888888888999999997
No 38
>PRK06357 hypothetical protein; Provisional
Probab=58.45 E-value=27 Score=27.69 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=24.9
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhc------cceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKW------GFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~------GFF~v~nHGI 100 (188)
.||++.+... ...++++.+.++.++- ..+.+.|||+
T Consensus 130 ~i~~~p~~~~----gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPA----TSPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCC----CcHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 3666655432 2457778888877764 4889999997
No 39
>PRK05834 hypothetical protein; Provisional
Probab=57.67 E-value=29 Score=27.01 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=23.8
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhcc--ceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWG--FFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~G--FF~v~nHGI 100 (188)
.||+++..... ......++++.++..+.. .+.|.|||+
T Consensus 121 ~ipv~~~~~~~--~~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFD--DWYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccc--hHHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 36776543321 112245667777777644 899999996
No 40
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=57.67 E-value=39 Score=27.65 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHhhccc--eEeec-CCCCHHHHHHHHHHHHHhhC
Q 048821 75 VRCEIVKEIGIASSKWGF--FQVVN-HDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GF--F~v~n-HGI~~~li~~~~~~~~~FF~ 117 (188)
.-......+.+....+|| |+++| ||=-...+..+.+..+..|.
T Consensus 87 t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 87 TLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 455677889999999999 66665 88777777777666666554
No 41
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=57.33 E-value=25 Score=27.62 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=26.1
Q ss_pred Ccceee-CCCCCCchhHHHHHHHHHHHHh-hccceEeecCCC
Q 048821 61 NVPIID-LRDIDKDGVRCEIVKEIGIASS-KWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvID-ls~l~~~~~~~~~~~~l~~Ac~-~~GFF~v~nHGI 100 (188)
.||+++ .. ...++++.+.++.+ +...+.+-|||+
T Consensus 137 ~vpv~~~~~------~~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIENHA------DIPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecCCC------CHHHHHHHHHHHhccCCcEEEECCCce
Confidence 477775 22 24578889998887 788899999996
No 42
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=55.89 E-value=12 Score=30.91 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=27.2
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++.+... +-.++++.+.++..+...+.+-|||+
T Consensus 179 ~i~vvpy~~p----gs~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 179 GVGIVPWMVP----GTDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred ceeEecCCCC----CCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4777766432 24567888888888888999999997
No 43
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=55.52 E-value=38 Score=24.87 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhccceEeecC-CCCHHHHHHHHHHHHH
Q 048821 76 RCEIVKEIGIASSKWGFFQVVNH-DIPQDIADEVIESIRR 114 (188)
Q Consensus 76 ~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~ 114 (188)
+..+++++.+.++++.+++++++ |++...+.++....+.
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 56788999999999988888874 7999888888887664
No 44
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=54.61 E-value=17 Score=28.24 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=26.2
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHh---hccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASS---KWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~---~~GFF~v~nHGI 100 (188)
.||+++. . ..-.++++.+.++.+ +...+.|-|||+
T Consensus 126 ~vp~~~~-~----~gs~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFEN-T----QDIARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecC-C----CChHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 5888864 2 134568888888886 468899999997
No 45
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=54.02 E-value=15 Score=29.07 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=26.2
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++.+.... -.++++++.++..+...+.+.|||+
T Consensus 122 ~v~~~~y~~~g----s~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATFG----TRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCCC----CHHHHHHHHHHhCcCCEEEecCCCC
Confidence 47777755432 3456778888887778899999997
No 46
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=53.78 E-value=23 Score=21.28 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChh
Q 048821 78 EIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNH 121 (188)
Q Consensus 78 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e 121 (188)
..+..|.......||....-.|+-...+.++.+..+.++.||..
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~~t 46 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLPVT 46 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-SS
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcCCC
Confidence 35678888899999997667788888888888888888888753
No 47
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=50.81 E-value=8.7 Score=20.41 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=12.9
Q ss_pred eEeecCCCCHHHHHHHH
Q 048821 93 FQVVNHDIPQDIADEVI 109 (188)
Q Consensus 93 F~v~nHGI~~~li~~~~ 109 (188)
.||..||++.+.+.+-+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 47889999988766544
No 48
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=48.73 E-value=17 Score=28.75 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=25.3
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHH--hhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIAS--SKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac--~~~GFF~v~nHGI 100 (188)
.||++..... ...+.++++.++. .+...+.+.|||+
T Consensus 130 ~ip~~~y~~~----g~~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 130 PIPVGPFALI----GDEAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred CeeccCCcCC----CcHHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 4676655432 2346777888887 6777889999997
No 49
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=48.20 E-value=20 Score=28.30 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=24.8
Q ss_pred cceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 62 VPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 62 iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
||++.+.... -.++++.+.++..+..-+.|-|||+
T Consensus 122 i~~v~y~~~g----s~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 122 IPCVPYATFG----STKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred ccccCCCCCC----hHHHHHHHHHHhhhCCEEehhcCCC
Confidence 5665554332 3456777777777788999999997
No 50
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=47.85 E-value=15 Score=28.75 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=27.5
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
..||+++..... ....+++..+.++..+.-.+.+-|||+
T Consensus 121 ~~ip~~~~~~~~--~~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPE--TGEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCC--ccHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 458888876531 024456667777777788899999997
No 51
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=43.94 E-value=31 Score=21.61 Aligned_cols=38 Identities=13% Similarity=0.387 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcc--ceEee------cCCCCHHHHHHHHHHHHH
Q 048821 77 CEIVKEIGIASSKWG--FFQVV------NHDIPQDIADEVIESIRR 114 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~G--FF~v~------nHGI~~~li~~~~~~~~~ 114 (188)
.+....|.+.++++| .+.++ -|||+.+-++++++..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 346778888888887 66654 478899888888876654
No 52
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=43.75 E-value=81 Score=23.34 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
.+..++++|.+.+++..++++++ +|++...+.++....++
T Consensus 4 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 4 KKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 46678888888888887777766 47888888888777664
No 53
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=43.65 E-value=57 Score=24.60 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhccceEee-cCCCCHHHHHHHHHHHHH
Q 048821 76 RCEIVKEIGIASSKWGFFQVV-NHDIPQDIADEVIESIRR 114 (188)
Q Consensus 76 ~~~~~~~l~~Ac~~~GFF~v~-nHGI~~~li~~~~~~~~~ 114 (188)
+.+.+++|.+.+.++-.++|+ .+|++...++++.+..+.
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 567888999999998766666 578999999999888764
No 54
>PRK06661 hypothetical protein; Provisional
Probab=42.87 E-value=26 Score=28.12 Aligned_cols=24 Identities=8% Similarity=-0.096 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhccceEeecCCC
Q 048821 77 CEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.+.++.+.++..+...+.+.|||+
T Consensus 137 ~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 137 DKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred hhHHHHHHHHhCCCCEEEECCCCC
Confidence 466778888889999999999997
No 55
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=42.01 E-value=68 Score=24.49 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 76 RCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 76 ~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
+.+.+++|.+.+.++..++|++ .|++...++++.+..++
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 5678888888888888777764 78888888888888764
No 56
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=40.96 E-value=94 Score=23.48 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
.+.+.+++|.+.++++-++++++ +|++...+.++.+..++
T Consensus 5 ~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 5 EKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 46677788888888776666665 46888777777777665
No 57
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=40.85 E-value=36 Score=29.10 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=37.6
Q ss_pred CCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhh
Q 048821 59 HFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFN 116 (188)
Q Consensus 59 ~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 116 (188)
...+|.||++.+.. ..+.+.++.++..++|+..+.|-.++.+.+ .+.++.|-
T Consensus 107 ~~~~~~~d~~~~~~---~~~~~~~~~~~l~~~G~v~~rg~~~~~~~~---~~~~~~~G 158 (366)
T TIGR02409 107 ELSLPKFDHEAVMK---DDSVLLDWLSAVRDVGIAVLKGAPTKPGAV---EKLGKRIG 158 (366)
T ss_pred cccCCceeHHHHhC---CHHHHHHHHHHHHhccEEEEeCCCCCHHHH---HHHHHHhc
Confidence 35688889876542 345678899999999999999988876544 44554543
No 58
>PRK07490 hypothetical protein; Provisional
Probab=40.01 E-value=29 Score=28.01 Aligned_cols=25 Identities=12% Similarity=-0.072 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhccceEeecCCC
Q 048821 76 RCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 76 ~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
..+.++.|.++..+.--+.+.|||+
T Consensus 145 ~~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 145 LEEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred cHHHHHHHHHHhCcCCEEEECCCCc
Confidence 4477888888888888999999997
No 59
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=39.46 E-value=1e+02 Score=23.67 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHHh
Q 048821 74 GVRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRRF 115 (188)
Q Consensus 74 ~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~F 115 (188)
+.+.+++++|.+..++...|.|++ +|++...+.++.+..|+-
T Consensus 6 e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~ 48 (175)
T COG0244 6 EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREA 48 (175)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhC
Confidence 357788999999999887776665 799999999999888763
No 60
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=39.29 E-value=23 Score=23.62 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=17.3
Q ss_pred HHHHHHHhhccceEeecCCCC
Q 048821 81 KEIGIASSKWGFFQVVNHDIP 101 (188)
Q Consensus 81 ~~l~~Ac~~~GFF~v~nHGI~ 101 (188)
+.|-+-|-+-||.||..|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 357788999999999888663
No 61
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=39.18 E-value=1.2e+02 Score=20.40 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHhhcc-ceEeecCCCCHHHHHHHHHHHHHh
Q 048821 74 GVRCEIVKEIGIASSKWG-FFQVVNHDIPQDIADEVIESIRRF 115 (188)
Q Consensus 74 ~~~~~~~~~l~~Ac~~~G-FF~v~nHGI~~~li~~~~~~~~~F 115 (188)
..+...+++|.+.+.++= ++.+..+|++...+.++....+..
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~ 46 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKK 46 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 457788999999999884 445556899999999988887775
No 62
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=38.70 E-value=79 Score=26.82 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
.+.+.+++|.+.+.++.+++|++ +|++...++++++..+.
T Consensus 7 ~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 7 WKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 46778889999999988888775 68999888888888774
No 63
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=35.33 E-value=90 Score=20.41 Aligned_cols=37 Identities=8% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHH
Q 048821 77 CEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIR 113 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~ 113 (188)
.++++.|..+.+.+||.+=--||.-.+-.++++....
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~~~ 51 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALRAWA 51 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHHHH
Confidence 4688999999999999998899987766666555443
No 64
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=34.89 E-value=99 Score=25.54 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhC
Q 048821 77 CEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 117 (188)
++..++|.++.++.|.++--|-.|-..++.++.+.+..+|.
T Consensus 105 ~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~ 145 (266)
T COG0289 105 EEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLD 145 (266)
T ss_pred HHHHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHHHhcC
Confidence 45567777777777877777887777777777777777775
No 65
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=32.50 E-value=53 Score=22.00 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhc
Q 048821 102 QDIADEVIESIRRFNEQPNHVKEK 125 (188)
Q Consensus 102 ~~li~~~~~~~~~FF~LP~eeK~~ 125 (188)
.++++.+...-..|..||.|.|..
T Consensus 20 sEVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHH
Confidence 466777888888899999998854
No 66
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=32.15 E-value=46 Score=26.04 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhcc---ceEeecCCC
Q 048821 76 RCEIVKEIGIASSKWG---FFQVVNHDI 100 (188)
Q Consensus 76 ~~~~~~~l~~Ac~~~G---FF~v~nHGI 100 (188)
..++++.+.++.++.. .+.|.|||+
T Consensus 144 ~~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 144 IARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 4678889999988864 899999996
No 67
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=31.58 E-value=76 Score=23.09 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=27.6
Q ss_pred CCcceeeCCCCCCc-hhHHHHHHHHHHHHhhccceE
Q 048821 60 FNVPIIDLRDIDKD-GVRCEIVKEIGIASSKWGFFQ 94 (188)
Q Consensus 60 ~~iPvIDls~l~~~-~~~~~~~~~l~~Ac~~~GFF~ 94 (188)
.+|-+.|++.+..+ ....+++++|+.-.++.|-+.
T Consensus 64 GNIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi 99 (124)
T COG2450 64 GNIVIADITPLERDDDLFERVIEELRDTAEEVGGDI 99 (124)
T ss_pred CCEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchh
Confidence 36888999998754 667889999998888887653
No 68
>PRK15331 chaperone protein SicA; Provisional
Probab=30.72 E-value=71 Score=24.43 Aligned_cols=42 Identities=26% Similarity=0.239 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhC
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 117 (188)
..+++++.|.+|..+ |==.-.=|||+++.|+.++..+..||.
T Consensus 8 ~~~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~ 49 (165)
T PRK15331 8 SEERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYN 49 (165)
T ss_pred hHHHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 355677788888876 422334599999999999999999995
No 69
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.40 E-value=1.3e+02 Score=23.37 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhccceEee----------------------cCCCCHHHHHHHHHHH
Q 048821 79 IVKEIGIASSKWGFFQVV----------------------NHDIPQDIADEVIESI 112 (188)
Q Consensus 79 ~~~~l~~Ac~~~GFF~v~----------------------nHGI~~~li~~~~~~~ 112 (188)
...++.+.|+.-||..+. +|+||++.+.+-+.-+
T Consensus 82 s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rs 137 (187)
T COG4185 82 SILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRS 137 (187)
T ss_pred hHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 345777889999997543 6788887777655443
No 70
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=29.17 E-value=58 Score=21.77 Aligned_cols=25 Identities=32% Similarity=0.234 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHhhccceEeecC
Q 048821 74 GVRCEIVKEIGIASSKWGFFQVVNH 98 (188)
Q Consensus 74 ~~~~~~~~~l~~Ac~~~GFF~v~nH 98 (188)
..-.++++.+.++|+++|.-.|-+|
T Consensus 71 ~~l~~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 71 EELKEIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCcEeCcC
Confidence 4567889999999999999887665
No 71
>PRK08324 short chain dehydrogenase; Validated
Probab=28.84 E-value=1.5e+02 Score=27.70 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=33.6
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhcc---ceEeecCCC---------CHHHHHHHHHHHHHhh
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWG---FFQVVNHDI---------PQDIADEVIESIRRFN 116 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~G---FF~v~nHGI---------~~~li~~~~~~~~~FF 116 (188)
.||++++... . .++++++.++.++.| .+.+-|||+ .-..+..+.+.++.++
T Consensus 155 ~v~~~py~~p----g-~~l~~~~~~~~~~~~~~~~~lL~nHG~~~~G~~~~eA~~~~~~~e~~a~~~~ 217 (681)
T PRK08324 155 RVGWVPYVRP----G-FDLALAIAEAVRANPGAEGVVLGKHGLFTWGDTAKEAYERTIEIITRAEEYI 217 (681)
T ss_pred ceEEcCccCC----C-hHHHHHHHHHHHhCCCCcEEEECCCCCeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 4777766543 1 245667777777654 889999997 2355566666777776
No 72
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=28.42 E-value=1.1e+02 Score=21.39 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=31.0
Q ss_pred CcceeeCCCCCC-chhHHHHHHHHHHHHhhccceEeecCCCCHHH
Q 048821 61 NVPIIDLRDIDK-DGVRCEIVKEIGIASSKWGFFQVVNHDIPQDI 104 (188)
Q Consensus 61 ~iPvIDls~l~~-~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~l 104 (188)
.+=-|||+.+.. |..--.+.-.+.+-|+.-|. .|.=+|||+.+
T Consensus 40 ~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~-~~~L~~~p~~L 83 (99)
T COG3113 40 DTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN-AVTLTGVPEQL 83 (99)
T ss_pred CeEEEehhhcceechHHHHHHHHHHHHHHHcCC-eeEEecCcHHH
Confidence 456789988752 32333466677788888888 88889999776
No 73
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=27.97 E-value=1.2e+02 Score=21.54 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=32.7
Q ss_pred eeeCCCCCCchhHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 64 IIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 64 vIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
+||++. .+.+..+.+.|.+.|-=.|++ .|.+.+.++.+.+.++.
T Consensus 71 vIDfT~-------p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 71 VIDFTN-------PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp EEEES--------HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred EEEcCC-------hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc
Confidence 678873 457777888888889999985 59998888888776654
No 74
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=24.84 E-value=1.1e+02 Score=24.41 Aligned_cols=40 Identities=18% Similarity=0.028 Sum_probs=24.2
Q ss_pred CcceeeCCCCCC-c-hhHHHHHHHHHHHHhhc-------cceEeecCCC
Q 048821 61 NVPIIDLRDIDK-D-GVRCEIVKEIGIASSKW-------GFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~-------GFF~v~nHGI 100 (188)
.||+++...-.. . .-..+.++.|.+++++- ..+.+.|||+
T Consensus 124 ~ip~~~~~~~~~~~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~ 172 (231)
T PRK08193 124 DIPCTRKMTDEEINGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGP 172 (231)
T ss_pred CcceecCCCcccccccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCc
Confidence 477776432110 0 01235677788887754 4788999997
No 75
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=24.81 E-value=2.3e+02 Score=22.89 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhhcc-----ceEee------cCCCCHHHHHHHHHHHHHhhCC
Q 048821 75 VRCEIVKEIGIASSKWG-----FFQVV------NHDIPQDIADEVIESIRRFNEQ 118 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~G-----FF~v~------nHGI~~~li~~~~~~~~~FF~L 118 (188)
+|..++++|.+...++| |.||- .||++.+.+..+...++++-.|
T Consensus 101 Dr~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L 155 (228)
T COG0325 101 DRLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNL 155 (228)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCC
Confidence 57889999998888888 66664 4899999888888877766554
No 76
>PRK06208 hypothetical protein; Provisional
Probab=24.71 E-value=66 Score=26.57 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhccceEeecCCC
Q 048821 76 RCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 76 ~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
..+.++.+.++.++...+.+.|||+
T Consensus 176 s~ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 176 DTSEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred chHHHHHHHHHhccCCEEEECCCCc
Confidence 4567888888888889999999996
No 77
>PRK06770 hypothetical protein; Provisional
Probab=24.52 E-value=1.1e+02 Score=23.66 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhccc
Q 048821 79 IVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFY 127 (188)
Q Consensus 79 ~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~ 127 (188)
.+.|-..|.+.|||+++ .++-++.++..... -..++|.+|.
T Consensus 79 MtHQKV~A~~KwG~~~m-----T~enI~~l~~~i~~---sn~~~k~~yl 119 (180)
T PRK06770 79 MTHQKVKADEKWGFIEM-----TQENIEKLKDIINS---SNFVQKEELL 119 (180)
T ss_pred HHhhhhhhhcccceEec-----CHHHHHHHHHHHhc---cchhhHHHHH
Confidence 34455579999999995 56677777666552 2256676653
No 78
>PRK07044 aldolase II superfamily protein; Provisional
Probab=24.48 E-value=83 Score=25.47 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=24.3
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++++..+.. ..+.++.+.++..+..-+.+-|||+
T Consensus 138 ~i~~~~y~~~~~---~~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 138 RLAYHDYEGIAL---DLDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CceeeCCCCCcC---CHHHHHHHHHHhccCCEEEECCCCc
Confidence 367666543211 2344567777777788899999997
No 79
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=24.20 E-value=78 Score=27.77 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhhccceEee--cCCCCH
Q 048821 75 VRCEIVKEIGIASSKWGFFQVV--NHDIPQ 102 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~--nHGI~~ 102 (188)
..+..+..|.+||++.|+.+|+ +||-.+
T Consensus 433 atD~aig~Iy~A~~~~~y~lvvTADHGNAE 462 (531)
T KOG4513|consen 433 ATDEAIGKIYDAIEQVGYILVVTADHGNAE 462 (531)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEcCCCCHH
Confidence 3567788999999999999998 687543
No 80
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=24.11 E-value=1.8e+02 Score=23.29 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=36.3
Q ss_pred CCCcceeeCCCCCCchhHHHHHHHHHHHHhhc---cceEeecCCC-----CHHHHHHHHHHHHHhhCCChhhh
Q 048821 59 HFNVPIIDLRDIDKDGVRCEIVKEIGIASSKW---GFFQVVNHDI-----PQDIADEVIESIRRFNEQPNHVK 123 (188)
Q Consensus 59 ~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~---GFF~v~nHGI-----~~~li~~~~~~~~~FF~LP~eeK 123 (188)
...||+|+-... ..++.+.|.+|.+.+ --..|.|||| .-+-..-+.+.-.-.|+|-.+-|
T Consensus 154 ~L~vPIIeNt~~-----E~~L~D~l~~aie~YP~tcAVLVR~HGvyvWG~TWekaKt~~EcydYLfelaikm~ 221 (238)
T KOG2631|consen 154 TLVVPIIENTPS-----ESDLKDSLKKAIELYPDTCAVLVRRHGVYVWGPTWEKAKTMTECYDYLFELAIKMK 221 (238)
T ss_pred eEEEeeecCCch-----HHHHHHHHHHHHHhCCcceEEEEecCcEEEecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999986542 344567777777755 3466779998 33444444455555666654433
No 81
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.07 E-value=88 Score=22.82 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHhhccceEeec
Q 048821 74 GVRCEIVKEIGIASSKWGFFQVVN 97 (188)
Q Consensus 74 ~~~~~~~~~l~~Ac~~~GFF~v~n 97 (188)
+.|....++|+..|++.|| .|.+
T Consensus 72 ~~r~~~y~kI~~~~~~~gf-~v~D 94 (130)
T PF04914_consen 72 EMRQEYYKKIKYQLKSQGF-NVAD 94 (130)
T ss_dssp HHHHHHHHHHHHHHHTTT---EEE
T ss_pred HHHHHHHHHHHHHHHHCCC-EEEe
Confidence 5789999999999999999 7654
No 82
>PRK06486 hypothetical protein; Provisional
Probab=23.80 E-value=70 Score=26.14 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhccceEeecCCC
Q 048821 77 CEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.+.++.+.++..+...+.|.|||+
T Consensus 162 ~ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 162 AAEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred hhHHHHHHHHhCcCCEEEECCCCC
Confidence 567788888888889999999997
No 83
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=23.72 E-value=1.1e+02 Score=25.58 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.3
Q ss_pred HHHHHhhccceEeecCCCCHHHHHHHHHHHH
Q 048821 83 IGIASSKWGFFQVVNHDIPQDIADEVIESIR 113 (188)
Q Consensus 83 l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~ 113 (188)
..+++++.|||.|-| +|..++.++.+...
T Consensus 17 Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 17 ALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 356889999999987 68888888777655
No 84
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=23.41 E-value=1.9e+02 Score=23.64 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCC
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQ 118 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 118 (188)
.+.+|-=+||+... -++..++|.++..+.|+..+.|-.++. ++..+.++.|-.+
T Consensus 12 ~Gaev~g~dl~~~l----~~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 12 IGAQISGIDLTRPL----SDNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred ceeEEeCcccCCcC----CHHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 34566667887532 235678899999999999999998875 4556667777654
No 85
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.70 E-value=76 Score=20.98 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=38.4
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCCh
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPN 120 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~ 120 (188)
.+=+||+..... .-.+++++|+..+....++.+++|.-+....+.+...+..|+.-|.
T Consensus 45 d~iiid~~~~~~--~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 45 DLIIIDLELPDG--DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp SEEEEESSSSSS--BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred eEEEEEeeeccc--cccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 466788754332 3457889999999888888888887765555555444455555554
No 86
>PLN02433 uroporphyrinogen decarboxylase
Probab=22.67 E-value=1.9e+02 Score=24.39 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhhccceEeecCCCC----HHHHHHHHHHHHHhh
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVNHDIP----QDIADEVIESIRRFN 116 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~nHGI~----~~li~~~~~~~~~FF 116 (188)
.-.+.++++.+.+..-||+.-.+|||+ .+-++.+.+++++|-
T Consensus 293 ~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi~a~v~av~~~~ 338 (345)
T PLN02433 293 AIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENVAHFFDVARELR 338 (345)
T ss_pred HHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 334444555555555678888899985 688899999988854
No 87
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=22.64 E-value=1.6e+02 Score=24.30 Aligned_cols=41 Identities=7% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCCCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEeecCC
Q 048821 57 HAHFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVVNHD 99 (188)
Q Consensus 57 ~~~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~nHG 99 (188)
.++..||||-+|-... + ...-++.++|+++-++ | ..|+.-|
T Consensus 128 ~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree-~-vlilaSG 170 (268)
T COG3384 128 FPDADIPVVQISIDCTLSPADHYELGRALRKLREE-G-VLILASG 170 (268)
T ss_pred CCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC-C-EEEEecC
Confidence 4677899999987653 3 5677899999999998 6 5555544
No 88
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=22.47 E-value=1e+02 Score=27.23 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=53.6
Q ss_pred HHHHHHHHh-hccceEeecCCCCHHHHHHHHHHHHHhhC-CChhhh---------hcccccCCCCceeeccCCc------
Q 048821 80 VKEIGIASS-KWGFFQVVNHDIPQDIADEVIESIRRFNE-QPNHVK---------EKFYSRDKTKKVRFNSNFD------ 142 (188)
Q Consensus 80 ~~~l~~Ac~-~~GFF~v~nHGI~~~li~~~~~~~~~FF~-LP~eeK---------~~~~~~~~~~~~Gy~~~~~------ 142 (188)
++++.+.|. +.-|..|..||=-..-+.+-.-....+|- ++...+ .+++.. +.||.-..+
T Consensus 270 ~~~i~~~~~~~i~Y~Rld~~GPklg~it~~~PL~~~YFT~~~~~~~~~~~~~~~~~~~~lA----nNGWV~~~dpl~dFA 345 (423)
T PF14701_consen 270 VEEILENLFNRIKYERLDDNGPKLGPITKKNPLVERYFTRLFKDKDSEATMKHDGKKLALA----NNGWVWNADPLVDFA 345 (423)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccccCCccccCccccceecCCCcchhhhccCCCceEEEE----eCCceeCCchhhhhc
Confidence 344444444 66888888898443333333345567774 444331 122211 234432211
Q ss_pred cC------cCCCCCccccccccccCCCCCCCCChHHHHHHHHHHHHHHhhc
Q 048821 143 LY------KARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRR 187 (188)
Q Consensus 143 ~~------~~~~~dw~E~~~~~~~p~~~wP~~~p~~fr~~~~~Y~~~~~~L 187 (188)
.. .-.+.-|-|+..+.|+.. |++.| ..-+-|.+|.+.|-++
T Consensus 346 ~~~S~~YLRREvIvWGDcVKLRYG~~---peDsP-~LW~~M~~Yt~~~A~i 392 (423)
T PF14701_consen 346 SPDSRAYLRREVIVWGDCVKLRYGSK---PEDSP-FLWKHMKEYTELMAKI 392 (423)
T ss_pred CCcccceEEEEEEecCceeeecCCCC---CCCCH-HHHHHHHHHHHHHHHh
Confidence 11 122356778877776543 55667 4678899999887653
No 89
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=22.41 E-value=1e+02 Score=18.78 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhCCChh
Q 048821 105 ADEVIESIRRFNEQPNH 121 (188)
Q Consensus 105 i~~~~~~~~~FF~LP~e 121 (188)
++.+.++..+-|..|.+
T Consensus 21 ~~~it~a~~~~~~~p~~ 37 (60)
T PRK02289 21 AREVTEVVSRIAKAPKE 37 (60)
T ss_pred HHHHHHHHHHHhCcCcc
Confidence 34444444555666543
No 90
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=22.39 E-value=1.7e+02 Score=24.12 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhccceE-------eecCCCCHHHHHHHHHHHHHhhCCChhhh
Q 048821 78 EIVKEIGIASSKWGFFQ-------VVNHDIPQDIADEVIESIRRFNEQPNHVK 123 (188)
Q Consensus 78 ~~~~~l~~Ac~~~GFF~-------v~nHGI~~~li~~~~~~~~~FF~LP~eeK 123 (188)
..+..|.+-|.++|.=+ +-|-.=+++.++.+++.+++-++.+.+..
T Consensus 67 ~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~~ 119 (271)
T KOG1602|consen 67 EALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQG 119 (271)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678889999999755 45888899999999999999998887764
No 91
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=22.24 E-value=1.4e+02 Score=21.17 Aligned_cols=46 Identities=15% Similarity=0.394 Sum_probs=34.3
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhh---ccceEeecCCCCHHHHHHHHHHHHHh
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSK---WGFFQVVNHDIPQDIADEVIESIRRF 115 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~---~GFF~v~nHGI~~~li~~~~~~~~~F 115 (188)
..||++-... + .+|..||-. ....-|++.|....+++++....+++
T Consensus 68 ~~Ip~~~~~s------k----~eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~i~~~ 116 (117)
T TIGR03677 68 KGIPYVYVKK------K----EDLGAAAGLEVGAASAAIVDEGKAEELLKEIIEKVEAL 116 (117)
T ss_pred cCCCEEEeCC------H----HHHHHHhCCCCCeEEEEEEchhhhHHHHHHHHHHHHhc
Confidence 4688776542 2 466777763 67788999999999999998877654
No 92
>PRK11460 putative hydrolase; Provisional
Probab=22.16 E-value=2.3e+02 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccc---eEe---ecCCCCHHHHHHHHHHHHHhh
Q 048821 78 EIVKEIGIASSKWGF---FQV---VNHDIPQDIADEVIESIRRFN 116 (188)
Q Consensus 78 ~~~~~l~~Ac~~~GF---F~v---~nHGI~~~li~~~~~~~~~FF 116 (188)
+.++++.+++++-|. |.+ .+|+|+.+.++.+.+..+.++
T Consensus 165 ~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 165 AHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 445566666666664 222 589999999888888777776
No 93
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=22.04 E-value=1.9e+02 Score=24.45 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhhccceEeecCCCC----HHHHHHHHHHHHHh
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVNHDIP----QDIADEVIESIRRF 115 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~nHGI~----~~li~~~~~~~~~F 115 (188)
.-.+.+.++.+.+..-||..-.+|||+ .+-++.+.+++++|
T Consensus 300 ~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 300 AIEEEVRAILDGGGGPGHIFNLGHGILPETPPENVKALVEAVHEL 344 (346)
T ss_pred HHHHHHHHHHHHhCCCCeeeecCCcCCCCcCHHHHHHHHHHHHHh
Confidence 334444555555567788888899874 68888888888874
No 94
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=21.53 E-value=1.1e+02 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=35.8
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhh
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFN 116 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 116 (188)
.+|.+|+..+.. ..++.+.++.++..++|+..|.|-.++.+... +.+++|.
T Consensus 100 ~~~~~~~~~~~~--~~d~~l~~~l~~l~~~G~v~~~g~~~~~~~~~---~~a~riG 150 (362)
T TIGR02410 100 KDPSVHFKTTYD--HTDSTLKSFSKNIYKYGFTFVDNVPVTPEATE---KLCERIS 150 (362)
T ss_pred cCCceeHHHHhc--cCHHHHHHHHHHHHhhCEEEEcCCCCCHHHHH---HHHHHhc
Confidence 357777655432 11467889999999999999999998776554 4444543
No 95
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=21.30 E-value=1.1e+02 Score=18.12 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhCCChh
Q 048821 105 ADEVIESIRRFNEQPNH 121 (188)
Q Consensus 105 i~~~~~~~~~FF~LP~e 121 (188)
.+.+.+...+.|..|.+
T Consensus 20 ~~~i~~~l~~~~g~~~~ 36 (58)
T cd00491 20 IERVTEAVSEILGAPEA 36 (58)
T ss_pred HHHHHHHHHHHhCcCcc
Confidence 33444445555655544
No 96
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=20.87 E-value=1.6e+02 Score=23.97 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcc--ceEeecCCCCH------HHHHHHHHHHH
Q 048821 77 CEIVKEIGIASSKWG--FFQVVNHDIPQ------DIADEVIESIR 113 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~G--FF~v~nHGI~~------~li~~~~~~~~ 113 (188)
+++.++++++++..| |+.-.+||++. +-++.|.++++
T Consensus 261 e~i~~~v~~~l~~~~~~~il~~~cgi~~~~~~~~enl~a~v~a~~ 305 (306)
T cd00465 261 EECIAKVEELVERLGPHYIINPDCGLGPDSDYKPEHLRAVVQLVD 305 (306)
T ss_pred HHHHHHHHHHHHHhCCCeEEeCCCCCCCCCCCcHHHHHHHHHHhh
Confidence 556666666666544 77777888753 55566655554
No 97
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=20.86 E-value=76 Score=23.27 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=16.2
Q ss_pred ecCCCCHHHHHHHHHHHH
Q 048821 96 VNHDIPQDIADEVIESIR 113 (188)
Q Consensus 96 ~nHGI~~~li~~~~~~~~ 113 (188)
.||||..+.|+.+++-++
T Consensus 114 ~~h~it~e~id~LY~~ak 131 (133)
T PF09440_consen 114 ENHGITPEMIDALYKYAK 131 (133)
T ss_pred HhcCCCHHHHHHHHHHhC
Confidence 899999999999998764
No 98
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=20.77 E-value=2.6e+02 Score=23.61 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 74 GVRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 74 ~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
..+...+++|.+.+.++-.++|++ +|++...++++++..|.
T Consensus 8 e~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~ 49 (310)
T PTZ00135 8 AKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRG 49 (310)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhc
Confidence 356778888888888887666665 68888888888888764
No 99
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=20.49 E-value=1.7e+02 Score=24.88 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHH
Q 048821 76 RCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIR 113 (188)
Q Consensus 76 ~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~ 113 (188)
+.+..++|++.+.++=.++|++ ++|+...++++++..|
T Consensus 8 K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lr 46 (323)
T PTZ00240 8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALR 46 (323)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhh
Confidence 6778889999999998888887 5689888888888877
No 100
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=20.44 E-value=1.1e+02 Score=18.36 Aligned_cols=16 Identities=13% Similarity=0.300 Sum_probs=7.3
Q ss_pred HHHHHHHHhhCCChhh
Q 048821 107 EVIESIRRFNEQPNHV 122 (188)
Q Consensus 107 ~~~~~~~~FF~LP~ee 122 (188)
.+.+...+-|..|.+.
T Consensus 23 ~it~~l~~~~~~p~~~ 38 (61)
T PRK02220 23 DVTAAVSKNTGAPAEH 38 (61)
T ss_pred HHHHHHHHHhCcChhh
Confidence 3333444455555444
No 101
>cd04367 IlGF_insulin_like IlGF_like family, insulin_like subgroup, specific to vertebrates. Members include a number of peptides including insulin and insulin-like growth factors I and II, which play a variety of roles in controlling processes such as metabolism, growth and differentiation, and reproduction. On a cellular level they affect cell cycle, apoptosis, cell migration, and differentiation. With the exception of the insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=20.30 E-value=78 Score=21.10 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhccceEeecCCC
Q 048821 77 CEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.++++.|.-.|.+-|||+--..+.
T Consensus 8 s~LvdaL~~VCG~RGF~~~pk~~r 31 (79)
T cd04367 8 SHLVDALYLVCGDRGFFYTPKRRR 31 (79)
T ss_pred HHHHHHHHHHHccCCcccCCcccc
Confidence 357888889999999999765554
No 102
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=20.26 E-value=1.1e+02 Score=18.92 Aligned_cols=30 Identities=10% Similarity=0.364 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHH--HHHHhh-CCChhhhhcc
Q 048821 97 NHDIPQDIADEVIE--SIRRFN-EQPNHVKEKF 126 (188)
Q Consensus 97 nHGI~~~li~~~~~--~~~~FF-~LP~eeK~~~ 126 (188)
+.-||.+|...+.+ .+.+|| .|+...+..+
T Consensus 3 ~~~vP~dl~~aL~~~p~a~~~f~~l~~~~rr~~ 35 (63)
T PF13376_consen 3 EVEVPEDLEAALEANPEAKEFFESLTPSYRREY 35 (63)
T ss_pred CCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHH
Confidence 34578888887776 678888 5888776554
No 103
>cd04368 IlGF IlGF, insulin_like growth factors; specific to vertebrates. Members include a number of peptides including insulin-like growth factors I and II, which play a variety of roles in controlling processes such as growth, differentiation, and reproduction. On a cellular level they affect cell cycle, apoptosis, cell migration, proliferation, and differentiation. Typically, the active forms of these peptide hormones are single chains cross-linked by three disulfide bonds.
Probab=20.23 E-value=99 Score=19.95 Aligned_cols=21 Identities=19% Similarity=0.367 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhccceEeec
Q 048821 77 CEIVKEIGIASSKWGFFQVVN 97 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~GFF~v~n 97 (188)
.++++.|...|.+-|||+...
T Consensus 8 ~~Lvd~L~~vCg~RGf~~~~~ 28 (67)
T cd04368 8 GELVDTLQFVCGDRGFYFSKP 28 (67)
T ss_pred HHHHHHHHHHhCCCCcccCCC
Confidence 357888889999999987653
Done!