Query 048821
Match_columns 188
No_of_seqs 242 out of 1923
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 00:15:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 100.0 1E-36 3.4E-41 257.8 11.5 165 23-188 4-180 (356)
2 3oox_A Putative 2OG-Fe(II) oxy 100.0 1.3E-29 4.6E-34 210.7 9.5 125 60-188 5-142 (312)
3 1dcs_A Deacetoxycephalosporin 100.0 2.4E-29 8.3E-34 209.1 6.9 121 60-188 3-130 (311)
4 1w9y_A 1-aminocyclopropane-1-c 99.9 9.1E-29 3.1E-33 206.3 6.3 120 61-188 3-125 (319)
5 3on7_A Oxidoreductase, iron/as 99.9 1.5E-27 5.1E-32 195.6 11.2 113 60-188 2-117 (280)
6 1odm_A Isopenicillin N synthas 99.9 6.4E-27 2.2E-31 196.0 9.3 121 59-188 6-153 (331)
7 4ay7_A Methylcobalamin\: coenz 73.7 6.7 0.00023 31.9 6.1 42 76-117 303-348 (348)
8 2dbn_A Hypothetical protein YB 66.7 2.5 8.7E-05 36.2 2.1 55 58-117 97-151 (461)
9 2opi_A L-fuculose-1-phosphate 59.8 4.2 0.00014 30.9 2.0 36 61-100 125-160 (212)
10 1m5a_B Insulin B chain; alpha 58.5 10 0.00035 19.7 2.7 19 77-95 9-27 (30)
11 1e4c_P L-fuculose 1-phosphate 53.1 6.3 0.00022 29.9 2.0 37 60-100 121-157 (215)
12 2fk5_A Fuculose-1-phosphate al 52.8 7.3 0.00025 29.3 2.3 36 61-100 117-153 (200)
13 1pvt_A Sugar-phosphate aldolas 52.2 7.8 0.00027 29.9 2.4 37 60-100 160-196 (238)
14 2irp_A Putative aldolase class 51.8 8.7 0.0003 28.9 2.6 35 61-100 139-176 (208)
15 3o2g_A Gamma-butyrobetaine dio 50.1 6.8 0.00023 32.6 1.9 52 61-118 122-173 (388)
16 2ld7_A Histone deacetylase com 49.9 37 0.0013 22.5 5.1 56 58-126 15-71 (94)
17 2do1_A Nuclear protein HCC-1; 48.8 19 0.00063 21.4 3.2 32 79-113 14-45 (55)
18 2v9l_A Rhamnulose-1-phosphate 47.2 8.3 0.00029 30.5 1.9 36 61-100 179-214 (274)
19 1oih_A Putative alkylsulfatase 45.5 26 0.00089 27.6 4.6 54 58-118 24-78 (301)
20 1otj_A Alpha-ketoglutarate-dep 45.2 28 0.00097 27.1 4.8 53 58-117 14-66 (283)
21 1zav_A 50S ribosomal protein L 45.0 50 0.0017 24.2 5.8 42 74-115 6-48 (180)
22 3ocr_A Class II aldolase/adduc 40.4 13 0.00045 29.4 2.1 37 61-100 156-192 (273)
23 3jsy_A Acidic ribosomal protei 39.0 57 0.0019 24.7 5.4 40 75-114 4-44 (213)
24 4f3y_A DHPR, dihydrodipicolina 38.7 24 0.00082 27.8 3.4 40 78-117 110-149 (272)
25 3pvj_A Alpha-ketoglutarate-dep 36.9 45 0.0015 26.1 4.7 54 58-118 12-65 (277)
26 3qy9_A DHPR, dihydrodipicolina 36.9 27 0.00092 27.1 3.3 41 77-117 88-128 (243)
27 3ijp_A DHPR, dihydrodipicolina 35.1 31 0.0011 27.5 3.5 40 78-117 125-164 (288)
28 4f21_A Carboxylesterase/phosph 32.7 86 0.0029 23.7 5.7 40 78-117 200-245 (246)
29 3r1j_A Alpha-ketoglutarate-dep 31.5 67 0.0023 25.5 5.0 54 58-118 18-72 (301)
30 3u5i_q A0, L10E, 60S acidic ri 29.9 80 0.0027 25.5 5.1 41 74-114 6-47 (312)
31 2j01_J 50S ribosomal protein L 29.2 1.2E+02 0.0042 21.9 5.7 40 75-114 5-46 (173)
32 3m4r_A Uncharacterized protein 27.9 24 0.00083 26.8 1.7 34 62-100 156-190 (222)
33 3nuf_A PRD-containing transcri 25.2 65 0.0022 22.2 3.2 40 58-124 67-106 (119)
34 3iz5_s 60S acidic ribosomal pr 24.7 85 0.0029 25.4 4.4 40 75-114 10-50 (319)
35 2wfu_B Probable insulin-like p 23.1 39 0.0013 16.8 1.3 14 78-92 9-22 (26)
36 1dih_A Dihydrodipicolinate red 22.9 66 0.0023 25.1 3.4 40 78-117 109-148 (273)
37 4exq_A UPD, URO-D, uroporphyri 21.6 1.4E+02 0.0048 24.3 5.2 38 78-115 316-358 (368)
38 2rdq_A 1-deoxypentalenic acid 21.2 1.2E+02 0.004 23.3 4.6 35 81-116 22-56 (288)
39 3a1y_G Acidic ribosomal protei 21.0 1E+02 0.0034 24.4 4.1 40 75-114 7-47 (284)
40 1r3s_A URO-D, uroporphyrinogen 21.0 1.5E+02 0.005 24.0 5.2 39 77-115 315-360 (367)
41 3lxr_F IPGB2; RHOA, GTPase, GE 20.8 78 0.0027 23.6 3.1 39 81-125 81-119 (192)
42 3m0z_A Putative aldolase; MCSG 20.6 1.3E+02 0.0045 23.3 4.5 40 74-114 170-210 (249)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=1e-36 Score=257.83 Aligned_cols=165 Identities=27% Similarity=0.384 Sum_probs=134.9
Q ss_pred cccHHHHHHCCCCCCCCcccCCCCCCCccccc--cC--CCCCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEee
Q 048821 23 KAGVKGLVDSGIQSVPKFFVAPSEETCNEKSD--LR--HAHFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVV 96 (188)
Q Consensus 23 ~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~--~~--~~~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~ 96 (188)
..+||+|+++|+.+||++|++|++++|..... .. ....+||||||+.+.+ + ..|.+++++|++||++||||||+
T Consensus 4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~ 83 (356)
T 1gp6_A 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI 83 (356)
T ss_dssp CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence 46899999999999999999998887753210 00 0124699999999864 3 55888999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCC-CCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCCh
Q 048821 97 NHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDK-TKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYP 170 (188)
Q Consensus 97 nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~-~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p 170 (188)
||||+.++++++++.+++||+||.|+|+++..... ...+||+........+..||+|+|++...|. +.||. .+
T Consensus 84 nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~-~~ 162 (356)
T 1gp6_A 84 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK-TP 162 (356)
T ss_dssp SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC-SS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCC-cc
Confidence 99999999999999999999999999999865433 3578998776555566789999999876542 37996 45
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 048821 171 EACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 171 ~~fr~~~~~Y~~~~~~La 188 (188)
++||+++++|+++|.+|+
T Consensus 163 ~~fr~~~~~y~~~~~~l~ 180 (356)
T 1gp6_A 163 SDYIEATSEYAKCLRLLA 180 (356)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 579999999999999874
No 2
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=99.96 E-value=1.3e-29 Score=210.68 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=102.1
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeecc
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNS 139 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~ 139 (188)
.+||||||+.+. ..+.+++++|++||++||||||+||||+.++++++++.+++||+||.|+|+++... ....+||..
T Consensus 5 ~~iPvIDls~~~--~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~-~~~~~Gy~~ 81 (312)
T 3oox_A 5 SAIDPVSFSLYA--KDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV-KGGARGYIP 81 (312)
T ss_dssp CSSCCEETHHHH--HCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSS-GGGTSEEEC
T ss_pred CCCCeEEChHhc--ccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccC-CCCcccccc
Confidence 469999998764 25778999999999999999999999999999999999999999999999998643 445789975
Q ss_pred CCcc--CcCCCCCcccccccccc-----------CCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 140 NFDL--YKARFANWRDTLSCLMA-----------PNPPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 140 ~~~~--~~~~~~dw~E~~~~~~~-----------p~~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
.... ......||+|.|.++.. +.+.||+.. ++||+++++|+++|.+|+
T Consensus 82 ~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~-p~fr~~~~~y~~~~~~l~ 142 (312)
T 3oox_A 82 FGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEI-PAFKHDVSWLYNSLDGMG 142 (312)
T ss_dssp CCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTS-TTHHHHHHHHHHHHHHHH
T ss_pred ccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcC-HHHHHHHHHHHHHHHHHH
Confidence 4322 22356899999987531 124799754 479999999999999874
No 3
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=99.95 E-value=2.4e-29 Score=209.07 Aligned_cols=121 Identities=13% Similarity=0.145 Sum_probs=94.0
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCC-hhhhhcccccCCCCceeec
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQP-NHVKEKFYSRDKTKKVRFN 138 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP-~eeK~~~~~~~~~~~~Gy~ 138 (188)
.+||||||+.+..+ .. .++|++||++||||||+|||||.++++++++++++||+|| .|+|+++........+||+
T Consensus 3 ~~iPvIDls~l~~~-~~---~~~l~~A~~~~GFf~l~nHGi~~~l~~~~~~~~~~fF~lP~~e~K~~~~~~~~~~~~Gy~ 78 (311)
T 1dcs_A 3 TTVPTFSLAELQQG-LH---QDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVTSPVPTMRRGFT 78 (311)
T ss_dssp CCCCEEEHHHHHTT-CS---HHHHHHHHHHTCEEEEESSSCCHHHHHHHHHHHHHHHHHCCHHHHHHTBCSSCCSSSEEE
T ss_pred CCCcEEEchhhcCC-CH---HHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCcHHHhHHhhccCCCCCCcee
Confidence 46999999876421 11 1299999999999999999999999999999999999999 9999998755445678998
Q ss_pred cCCcc------CcCCCCCccccccccccCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 139 SNFDL------YKARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 139 ~~~~~------~~~~~~dw~E~~~~~~~p~~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
..... ...+..||+|+|++...|+ .|| +++||+++++|+++|.+|+
T Consensus 79 ~~~~e~~~~~~~~~~~~d~~E~~~~~~~~n-~wP---~~~fr~~~~~y~~~~~~l~ 130 (311)
T 1dcs_A 79 GLESESTAQITNTGSYSDYSMCYSMGTADN-LFP---SGDFERIWTQYFDRQYTAS 130 (311)
T ss_dssp EC-----------------CEEEEECSSSC-CCS---CHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccCCCCCCCcceeeeccCCCC-CCC---ChHHHHHHHHHHHHHHHHH
Confidence 75432 2245789999999987776 899 4579999999999999874
No 4
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=99.95 E-value=9.1e-29 Score=206.27 Aligned_cols=120 Identities=23% Similarity=0.356 Sum_probs=100.6
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSN 140 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~ 140 (188)
+||||||+.+.. ..+.+++++|++||++||||||+|||||.++++++++.+++||+||.|+|+++. .. ..||...
T Consensus 3 ~iPvIDls~l~~-~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~-~~---~~Gy~~~ 77 (319)
T 1w9y_A 3 NFPIISLDKVNG-VERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKEL-VA---SKALEGV 77 (319)
T ss_dssp CCCEEEGGGGGS-TTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHTTC
T ss_pred CCCEEECcccCc-ccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhhc-cC---CCCCCcc
Confidence 699999998752 357889999999999999999999999999999999999999999999999974 22 3478654
Q ss_pred CccCcCCCCCccccccccccCC---CCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 141 FDLYKARFANWRDTLSCLMAPN---PPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 141 ~~~~~~~~~dw~E~~~~~~~p~---~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
. ...+..||+|+|.+...|. +.||. .|++||+++++|+++|.+|+
T Consensus 78 ~--~e~~~~d~ke~~~~~~~p~~~~~~wP~-~~~~fr~~~~~y~~~~~~l~ 125 (319)
T 1w9y_A 78 Q--AEVTDMDWESTFFLKHLPISNISEVPD-LDEEYREVMRDFAKRLEKLA 125 (319)
T ss_dssp C--CCGGGCCCCEEEEEEEESCCGGGGCTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred c--ccCCCCChhhheeeecCCccccccccc-chhHHHHHHHHHHHHHHHHH
Confidence 2 2235789999999876653 37996 55689999999999999874
No 5
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=99.95 E-value=1.5e-27 Score=195.64 Aligned_cols=113 Identities=16% Similarity=0.230 Sum_probs=90.9
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeecc
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNS 139 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~ 139 (188)
++||||||+.. ..+++|++||++||||||+|||||.++++++++.+++||+| |+|+++. ..+...+||..
T Consensus 2 ~~IPvIDls~~-------~~~~~l~~A~~~~GFF~v~nHGi~~~li~~~~~~~~~FF~l--e~K~k~~-~~~~~~~GY~~ 71 (280)
T 3on7_A 2 MKLETIDYRAA-------DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNS--EAKNEFM-FNRETHDGFFP 71 (280)
T ss_dssp --CCEEETTST-------THHHHHHHHHHHHSEEEEESCSSCHHHHHHHHHHHHHHHTS--GGGGGGB-CCTTTCCEEEC
T ss_pred CCCCEEECCCh-------hHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHhhh--HHHHHhc-cCCCCCCcccc
Confidence 46999999874 25789999999999999999999999999999999999998 7999975 34456789986
Q ss_pred CC---ccCcCCCCCccccccccccCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 048821 140 NF---DLYKARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 140 ~~---~~~~~~~~dw~E~~~~~~~p~~~wP~~~p~~fr~~~~~Y~~~~~~La 188 (188)
.. ........||+|+|++. +||. .|++||+++++|+++|.+|+
T Consensus 72 ~~~~e~~~~~~~~D~kE~~~~~-----p~~~-~p~~fr~~~~~y~~~~~~l~ 117 (280)
T 3on7_A 72 ASISETAKGHTVKDIKEYYHVY-----PWGR-IPDSLRANILAYYEKANTLA 117 (280)
T ss_dssp CC--------CCCCSCEEEEEC-----TTSC-CCGGGHHHHHHHHHHHHHHH
T ss_pred CccccccCCCCcccHHHHHhcC-----CCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 54 12223468999999874 4664 56789999999999999874
No 6
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=99.94 E-value=6.4e-27 Score=196.02 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=96.8
Q ss_pred CCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHh-hCCChhhhhcccccCCCCce
Q 048821 59 HFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRF-NEQPNHVKEKFYSRDKTKKV 135 (188)
Q Consensus 59 ~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~F-F~LP~eeK~~~~~~~~~~~~ 135 (188)
..+||||||+.+.. + ..+.+++++|++||++||||||+|||| +++++++.+++| |+||.|+|+++.. +
T Consensus 6 ~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~~~~~~~~F~F~lP~eeK~~~~~------~ 76 (331)
T 1odm_A 6 KANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQRLSQKTKEFHMSITPEEKWDLAI------R 76 (331)
T ss_dssp BCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHHHHHHHHHHHHHCCHHHHHHHBC------T
T ss_pred CCCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHHHHHHHHhccCCCCHHHHHhhhh------c
Confidence 35699999998853 3 568889999999999999999999999 999999999999 9999999999853 4
Q ss_pred eeccCCc--cCc------CCCCCccccccccccC---------------CCCCCCC-ChHHHHHHHHHHHHHHhhcC
Q 048821 136 RFNSNFD--LYK------ARFANWRDTLSCLMAP---------------NPPPPEE-YPEACRYAFLHLLNNIQRRA 188 (188)
Q Consensus 136 Gy~~~~~--~~~------~~~~dw~E~~~~~~~p---------------~~~wP~~-~p~~fr~~~~~Y~~~~~~La 188 (188)
||..... ... ....||+|.|++...+ .+.||.. .+++||+++++|+++|.+|+
T Consensus 77 Gy~~~~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~ 153 (331)
T 1odm_A 77 AYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLS 153 (331)
T ss_dssp TTCTTCTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHH
T ss_pred CCCcCCccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 5654321 111 2567999999887421 2379964 14579999999999999874
No 7
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=73.68 E-value=6.7 Score=31.93 Aligned_cols=42 Identities=14% Similarity=-0.005 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhccceEeecCCC----CHHHHHHHHHHHHHhhC
Q 048821 76 RCEIVKEIGIASSKWGFFQVVNHDI----PQDIADEVIESIRRFNE 117 (188)
Q Consensus 76 ~~~~~~~l~~Ac~~~GFF~v~nHGI----~~~li~~~~~~~~~FF~ 117 (188)
.+++.+++.+..+.-||..=.+||| |.+-+..+.+++++|++
T Consensus 303 ~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey~A 348 (348)
T 4ay7_A 303 VDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEFYA 348 (348)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHhcC
Confidence 4566677777788888877789997 56889999999999985
No 8
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=66.74 E-value=2.5 Score=36.23 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=41.7
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhC
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 117 (188)
.+.-||.||++++. ...+..+.++..++.|++.|.|+ ||.+...+..+...+|.+
T Consensus 97 G~~~iP~i~f~di~----~~~~s~~~~~~ir~rG~vVIRgv-vp~e~A~~~~~~~~~yl~ 151 (461)
T 2dbn_A 97 GDAVWPVLSYADIK----AGHVTAEQREQIKRRGCAVIKGH-FPREQALGWDQSMLDYLD 151 (461)
T ss_dssp TCCSSCEEEHHHHH----HTCCCHHHHHHHHHHSEEEEETS-SCHHHHHHHHHHHHHHHH
T ss_pred CCCCcceecHHHhc----CCCCCHHHHHHHHhccEEEECCC-CCHHHHHHHHHHHHHHHH
Confidence 44579999998753 11133566677889999988888 999999888888888874
No 9
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=59.77 E-value=4.2 Score=30.85 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=27.7
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||+++..... ..++++.+.++..+.-.+.+.|||+
T Consensus 125 ~v~~~~y~~~g----~~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPG----SPELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTT----CHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCC----cHHHHHHHHHHhccCCEEEEcCCCc
Confidence 68999876532 3457788888888777888899997
No 10
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=58.47 E-value=10 Score=19.71 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhccceEe
Q 048821 77 CEIVKEIGIASSKWGFFQV 95 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~GFF~v 95 (188)
.++++.|.-.|.+-|||+.
T Consensus 9 s~LVdaL~~vCgdRGF~~~ 27 (30)
T 1m5a_B 9 SHLVEALYLVCGERGFFYT 27 (30)
T ss_dssp HHHHHHHHHHHGGGCEEEC
T ss_pred HHHHHHHHHHhccCccccC
Confidence 4688889999999999984
No 11
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=53.06 E-value=6.3 Score=29.90 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=27.8
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
..||+++..... ..++++.+.++..+.-.+.+.|||+
T Consensus 121 ~~ip~~~y~~~g----~~~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 121 NSIPCAPYATFG----TRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp SCBCEECCCCTT----CHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CCcceeeCCCCC----cHHHHHHHHHHhccCCEEEEcCCCc
Confidence 368998876542 3357778888888777888899997
No 12
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=52.76 E-value=7.3 Score=29.30 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=26.5
Q ss_pred Cccee-eCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPII-DLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvI-Dls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++ +..... ..++++.+.++..+.-.+.+.|||+
T Consensus 117 ~ip~~~~y~~~g----~~ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 117 EVPVLAPKTVSA----TEEAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp CEEEECCSCCSS----SHHHHHHHHHHHHHCSEEEETTTEE
T ss_pred CceEecCCCCCC----cHHHHHHHHHHhCcCCEEEECCCCc
Confidence 69999 665432 3456777888887778888999995
No 13
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=52.22 E-value=7.8 Score=29.88 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=27.9
Q ss_pred CCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 60 FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 60 ~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
..||+++.... ...++++.+.++.++.-.+.+-|||+
T Consensus 160 ~~v~~~~y~~~----g~~ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 160 QGISVVEFEKP----GSVELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp SCCEEECCCST----TCHHHHHHHHHHTSSCSEEEETTSCE
T ss_pred CCceEecCCCC----CcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 36899987543 23467778888888878888899997
No 14
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=51.76 E-value=8.7 Score=28.89 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=26.2
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhcc---ceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWG---FFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~G---FF~v~nHGI 100 (188)
.||+++.. . +..++++.+.++..+.+ .+.+.|||+
T Consensus 139 ~vp~~~~~-~----g~~~La~~i~~~l~~~~~~~avll~nHG~ 176 (208)
T 2irp_A 139 KIPIFPNE-Q----NIPLLAKEVENYFKTSEDKYGFLIRGHGL 176 (208)
T ss_dssp EEEEECCC-S----CHHHHHHHHHHHHHHCSCCSCEEETTTEE
T ss_pred ceeeecCC-C----CHHHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 68888763 1 34568888888888765 788899996
No 15
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=50.10 E-value=6.8 Score=32.59 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=39.0
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQ 118 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 118 (188)
++|-||++.+. ..++.+.++.+++.++|+..+.|-.++.+. ..+.++.|-.+
T Consensus 122 ~~~~~~~~~~l---~~d~~~~~~~~~l~~~Gvv~frg~~~~~~~---~~~~a~~~G~l 173 (388)
T 3o2g_A 122 QLPTLDFEDVL---RYDEHAYKWLSTLKKVGIVRLTGASDKPGE---VSKLGKRMGFL 173 (388)
T ss_dssp CCCEEEHHHHH---HCHHHHHHHHHHHHHHSEEEEECCCSSTTH---HHHHHHHHSCC
T ss_pred CCCccCHHHHh---cCHHHHHHHHHHHHhcCEEEEeCCCCCHHH---HHHHHHHhCCC
Confidence 68889987653 235678899999999999999999888553 44566666544
No 16
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=49.92 E-value=37 Score=22.48 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=38.7
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhh-CCChhhhhcc
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFN-EQPNHVKEKF 126 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF-~LP~eeK~~~ 126 (188)
.+...|-|||+.|. ...|++-++.++. =++.+++.+ ++..+.++.| .+|..|+.-+
T Consensus 15 ~~~~~p~vdf~kL~--------~~tLrrY~r~y~L--~~~~~~sK~---qLa~aV~kHF~s~~VdE~evI 71 (94)
T 2ld7_A 15 QDIDTPEVDLYQLQ--------VNTLRRYKRHFKL--PTRPGLNKA---QLVEIVGCHFKSIPVNEKDTL 71 (94)
T ss_dssp CSSCCCCCCCSSSC--------HHHHHHHHHHTTC--CCCSSCCHH---HHHHHHHHHHTTCCCCHHHHH
T ss_pred ccCCCCCcCHHHCC--------HHHHHHHHHHhCC--CCCCCCCHH---HHHHHHHHHHHcCCCCHHHHH
Confidence 34568889999874 3568888888887 467788775 3344454555 7898887553
No 17
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=48.75 E-value=19 Score=21.43 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHH
Q 048821 79 IVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIR 113 (188)
Q Consensus 79 ~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~ 113 (188)
.+.+|.+.|+.+| +---|.-.+||+++.+...
T Consensus 14 kV~eLK~~L~~rG---L~~~G~KaeLieRL~~~l~ 45 (55)
T 2do1_A 14 KLAELKQECLARG---LETKGIKQDLIHRLQAYLE 45 (55)
T ss_dssp CHHHHHHHHHHHT---CCCCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcC---CCCCCcHHHHHHHHHHHHh
Confidence 5678999999999 4456778899988876544
No 18
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=47.20 E-value=8.3 Score=30.49 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=27.8
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||+++.... ...++++.+.++..+.-.+.+-|||+
T Consensus 179 ~v~v~~y~~~----g~~ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVP----GTDAIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCS----SSHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCC----CCHHHHHHHHHHHccCCEEEEcCCCc
Confidence 5888887543 23467788888888888888999997
No 19
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=45.51 E-value=26 Score=27.63 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=39.3
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCC-CCHHHHHHHHHHHHHhhCC
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHD-IPQDIADEVIESIRRFNEQ 118 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG-I~~~li~~~~~~~~~FF~L 118 (188)
.+.+|+-|||+...+ .+..++|++++.++|+..+.|-. ++. ++..+.++.|-.+
T Consensus 24 ~Gaei~gvdl~~~l~----~~~~~~l~~~l~~~Gvv~fRg~~~l~~---~~~~~~~~~fG~l 78 (301)
T 1oih_A 24 IGAEIRGVKLSPDLD----AATVEAIQAALVRHKVIFFRGQTHLDD---QSQEGFAKLLGEP 78 (301)
T ss_dssp SCEEEESCCCCTTCC----HHHHHHHHHHHHHHSEEEECCCTTCCH---HHHHHHHHTTSCB
T ss_pred cceEEeCCCccccCC----HHHHHHHHHHHHHCCEEEECCCCCCCH---HHHHHHHHHhCCC
Confidence 355688789987432 34678999999999999999987 885 4555666666543
No 20
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=45.18 E-value=28 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.037 Sum_probs=38.6
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhC
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 117 (188)
.+.+|+-|||+...+ .+...+|.+++.++|+..+.|-.++.+. ..+.++.|=.
T Consensus 14 ~Gaei~gvdl~~~l~----~~~~~~l~~~l~~~Gvv~frg~~~~~~~---~~~~~~~~G~ 66 (283)
T 1otj_A 14 IGAQISGADLTRPLS----DNQFEQLYHAVLRHQVVFLRDQAITPQQ---QRALAQRFGE 66 (283)
T ss_dssp SCEEEESCCSSSCCC----HHHHHHHHHHHHHHSEEEECSCCCCHHH---HHHHHHTTSC
T ss_pred ceEEEECCCcCccCC----HHHHHHHHHHHHHCCEEEECCCCCCHHH---HHHHHHHhCC
Confidence 455688889987432 3467899999999999999998887654 3445666543
No 21
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=45.04 E-value=50 Score=24.21 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHHh
Q 048821 74 GVRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRRF 115 (188)
Q Consensus 74 ~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~F 115 (188)
..+..++++|.+..++...++|++ +|++...+.++....++-
T Consensus 6 ~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~ 48 (180)
T 1zav_A 6 QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREK 48 (180)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 357788899999999998888886 589998888888877654
No 22
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=40.45 E-value=13 Score=29.40 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=27.3
Q ss_pred CcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCC
Q 048821 61 NVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDI 100 (188)
Q Consensus 61 ~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 100 (188)
.||++|+..+.. ..+..+.|.++..+.-.+.+.|||+
T Consensus 156 ~v~~~~y~~~~~---~~el~~~i~~~l~~~~avlL~nHG~ 192 (273)
T 3ocr_A 156 RVAYHGYEGIAL---DLSERERLVADLGDKSVMILRNHGL 192 (273)
T ss_dssp TEEEECCCCSSC---CHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred CEEEECCCCCCC---CHHHHHHHHHHhCcCCEEEEcCCce
Confidence 588888765421 2345677777888888899999996
No 23
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=38.99 E-value=57 Score=24.71 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
.+.+.+++|.+...++..++|++ +|++...++++++..++
T Consensus 4 ~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 44 (213)
T 3jsy_A 4 WKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRD 44 (213)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 34566677777777766665554 56777777766666653
No 24
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=38.73 E-value=24 Score=27.84 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhC
Q 048821 78 EIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 78 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 117 (188)
+..++|.++|++.+.|+.-|-.+--.++.++.+.+.++|.
T Consensus 110 ~~~~~L~~aa~~~~vv~a~N~s~Gv~l~~~~~~~aa~~l~ 149 (272)
T 4f3y_A 110 PQKAQLRAAGEKIALVFSANMSVGVNVTMKLLEFAAKQFA 149 (272)
T ss_dssp HHHHHHHHHTTTSEEEECSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCEEEECCCCHHHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999999998888884
No 25
>3pvj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, Fe(II) binding, oxidoreductas; 1.85A {Pseudomonas putida KT2440} SCOP: b.82.2.5 PDB: 3v15_A 3v17_A*
Probab=36.90 E-value=45 Score=26.08 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=39.9
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCC
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQ 118 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 118 (188)
.+.+|.=|||+...+ ++..++|++++.++|...+.|-.++.+ +..+.++.|=.+
T Consensus 12 ~Gaei~gvdl~~~l~----~~~~~~l~~~l~~~gvv~fR~q~l~~~---~~~~fa~~fG~l 65 (277)
T 3pvj_A 12 LGAQISGVDISRDIS----AEERDAIEQALLQHQVLFLRDQPINPE---QQARFAARFGDL 65 (277)
T ss_dssp SCEEEESCCTTSCCC----HHHHHHHHHHHHHHSEEEESSCCCCHH---HHHHHHGGGSCE
T ss_pred eeEEEeCCCccccCC----HHHHHHHHHHHHHCCEEEECCCCCCHH---HHHHHHHHhCCC
Confidence 456788889987432 356788999999999999999988765 445567776443
No 26
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=36.89 E-value=27 Score=27.07 Aligned_cols=41 Identities=7% Similarity=0.098 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhC
Q 048821 77 CEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 77 ~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 117 (188)
.+..++|.++|++.+.|+--|-.|--.++.++.+.+.++|.
T Consensus 88 ~e~~~~l~~aa~~~~v~~a~N~S~Gv~l~~~~~~~aa~~l~ 128 (243)
T 3qy9_A 88 EKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLD 128 (243)
T ss_dssp HHHHHHHHHHTTTSEEEECSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCEEEECCccHHHHHHHHHHHHHHHhcC
Confidence 44578999999999999999999999999999998888874
No 27
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=35.06 E-value=31 Score=27.54 Aligned_cols=40 Identities=5% Similarity=-0.002 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhC
Q 048821 78 EIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 78 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 117 (188)
+..++|.++|++.++|+.-|-.|--.++.++.+.+.++|.
T Consensus 125 e~~~~L~~aa~~~~~~~a~N~SiGv~ll~~l~~~aa~~l~ 164 (288)
T 3ijp_A 125 TEEAQIADFAKYTTIVKSGNMSLGVNLLANLVKRAAKALD 164 (288)
T ss_dssp HHHHHHHHHHTTSEEEECSCCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCcCCEEEECCCcHHHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999999998888874
No 28
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=32.73 E-value=86 Score=23.69 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhccc---eEe---ecCCCCHHHHHHHHHHHHHhhC
Q 048821 78 EIVKEIGIASSKWGF---FQV---VNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 78 ~~~~~l~~Ac~~~GF---F~v---~nHGI~~~li~~~~~~~~~FF~ 117 (188)
+.++++.+..++.|+ |.. .+|+|+.+.++++.+.-++-|+
T Consensus 200 ~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 200 VLGHDLSDKLKVSGFANEYKHYVGMQHSVCMEEIKDISNFIAKTFK 245 (246)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEESSCCSSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCCccCHHHHHHHHHHHHHHhC
Confidence 455666677777775 333 3799999988888776666554
No 29
>3r1j_A Alpha-ketoglutarate-dependent taurine dioxygenase; ssgcid, oxidoreductase, structural genomics; 2.05A {Mycobacterium avium} SCOP: b.82.2.0 PDB: 3swt_A
Probab=31.50 E-value=67 Score=25.49 Aligned_cols=54 Identities=13% Similarity=0.006 Sum_probs=39.4
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecC-CCCHHHHHHHHHHHHHhhCC
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNH-DIPQDIADEVIESIRRFNEQ 118 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~FF~L 118 (188)
.+.+|+=|||+... .++..++|+.++.++|...+.|- .++.+ +..+.++.|=.+
T Consensus 18 iGaei~gvdl~~~L----~d~~~~~l~~al~~~gvv~fR~q~~l~~~---~~~~fa~~fG~l 72 (301)
T 3r1j_A 18 IGARVDGVRLGGDL----DDATVEQIRRALLTHKVIFFRHQHHLDDS---RQLEFARLLGTP 72 (301)
T ss_dssp SCEEEESCCCSTTC----CHHHHHHHHHHHHHHSEEEECCCTTCCHH---HHHHHHHHHSCB
T ss_pred ccceEeCCCccccC----CHHHHHHHHHHHHHCCEEEECCCCCCCHH---HHHHHHHhcCCc
Confidence 35578888998432 24567899999999999999998 78875 445566666444
No 30
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=29.93 E-value=80 Score=25.47 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 74 GVRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 74 ~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
..+...+++|.+...++..++|++ +|++...++++++..|+
T Consensus 6 e~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~ 47 (312)
T 3u5i_q 6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRG 47 (312)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 356778888888888887777765 78888888888887764
No 31
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=29.24 E-value=1.2e+02 Score=21.85 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhhcc-ceEeec-CCCCHHHHHHHHHHHHH
Q 048821 75 VRCEIVKEIGIASSKWG-FFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~G-FF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
.+..++++|.+..++.. .++|++ +|++...+.++....++
T Consensus 5 ~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~ 46 (173)
T 2j01_J 5 RNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQ 46 (173)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46778888999888888 666654 58988888888877664
No 32
>3m4r_A Uncharacterized protein; short chain dehydrogenase, class II aldolase, adducin head D carbohydrate metabolism, structural genomics; 2.00A {Thermoplasma acidophilum}
Probab=27.94 E-value=24 Score=26.85 Aligned_cols=34 Identities=15% Similarity=0.021 Sum_probs=25.2
Q ss_pred cceeeCCCCCCchhHHHHHHHHHHHHhhc-cceEeecCCC
Q 048821 62 VPIIDLRDIDKDGVRCEIVKEIGIASSKW-GFFQVVNHDI 100 (188)
Q Consensus 62 iPvIDls~l~~~~~~~~~~~~l~~Ac~~~-GFF~v~nHGI 100 (188)
||++++... .- ++++.|.+++.+. -.+.|.|||+
T Consensus 156 v~~~~y~~~----g~-ela~~i~~~l~~~~~avlL~nHG~ 190 (222)
T 3m4r_A 156 VVVLPYIPP----GF-TLAKEVMNCFKKGIDGIVLRKHGL 190 (222)
T ss_dssp EEEECCCCS----SH-HHHHHHHHHCCTTCSEEEETTTEE
T ss_pred ceecCCcCC----cH-HHHHHHHHHHhcCCCEEEECCCCC
Confidence 888887553 23 6788888888754 5677899996
No 33
>3nuf_A PRD-containing transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 1.38A {Lactobacillus casei}
Probab=25.21 E-value=65 Score=22.22 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=27.8
Q ss_pred CCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhh
Q 048821 58 AHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKE 124 (188)
Q Consensus 58 ~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~ 124 (188)
.+..+|-||.+.+.. |+.+.++=..++.+.|-+||.+|+-
T Consensus 67 ~GE~LPeVd~sLF~E---------------------------IS~es~~LA~~Vv~~~g~L~~eE~~ 106 (119)
T 3nuf_A 67 SGEQLPAVDPTMFAE---------------------------VSQKSLDLADQVVQHIGHLEVAEKY 106 (119)
T ss_dssp HCCCCCCCCGGGGTT---------------------------SCHHHHHHHHHHHHHHCSSCTTHHH
T ss_pred cCCcCCccCHHHHHH---------------------------cCHHHHHHHHHHHHHhcCCCHHHHH
Confidence 356799999987752 5556666666666677778877763
No 34
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=24.71 E-value=85 Score=25.38 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
.+...+++|.+...++..++|++ +|++...++++++..|+
T Consensus 10 ~K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~ 50 (319)
T 3iz5_s 10 KKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRG 50 (319)
T ss_dssp CSSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 45678889999999888777775 78999988888888874
No 35
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=23.09 E-value=39 Score=16.82 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhccc
Q 048821 78 EIVKEIGIASSKWGF 92 (188)
Q Consensus 78 ~~~~~l~~Ac~~~GF 92 (188)
++.+.|...|.+ ||
T Consensus 9 ~L~eaL~~vC~~-GF 22 (26)
T 2wfu_B 9 ALMDMLRVACPN-GF 22 (26)
T ss_dssp HHHHHHHHHCSS-CC
T ss_pred HHHHHHHHHHhc-cC
Confidence 567788888887 87
No 36
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=22.93 E-value=66 Score=25.15 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhC
Q 048821 78 EIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNE 117 (188)
Q Consensus 78 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 117 (188)
+..++|.++|++.|.++..|-++-..++.++.+.+.++|.
T Consensus 109 e~~~~L~~~a~~~~vv~a~N~siGvn~~~~l~~~aa~~~~ 148 (273)
T 1dih_A 109 AGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMG 148 (273)
T ss_dssp HHHHHHHHHTTTSCEEECSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHHHHHHhcC
Confidence 4478888999999999999999988888888888888874
No 37
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=21.55 E-value=1.4e+02 Score=24.31 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHHHHHHh-hccceEeecCCCC----HHHHHHHHHHHHHh
Q 048821 78 EIVKEIGIASS-KWGFFQVVNHDIP----QDIADEVIESIRRF 115 (188)
Q Consensus 78 ~~~~~l~~Ac~-~~GFF~v~nHGI~----~~li~~~~~~~~~F 115 (188)
+.++++.+.+. .-||..=.+|||+ .+-+..+.++++++
T Consensus 316 ~~v~~~l~~~g~~~g~I~n~Ghgi~p~tp~Env~a~veav~~~ 358 (368)
T 4exq_A 316 AEARAVLDSYGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRH 358 (368)
T ss_dssp HHHHHHHHHHCSCSCEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHHh
Confidence 33344444443 2578888899984 67788888888776
No 38
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=21.20 E-value=1.2e+02 Score=23.26 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhh
Q 048821 81 KEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFN 116 (188)
Q Consensus 81 ~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 116 (188)
+++.+..++-||+.|.|- ++.+.++++.+...+.+
T Consensus 22 ~~~~~~f~~dGyvvl~~~-l~~e~v~~l~~~~~~~~ 56 (288)
T 2rdq_A 22 AALDSFYEEHGYLFLRNV-LDRDLVKTVAEQMREGL 56 (288)
T ss_dssp HHHHHHHHHHSEEEECSC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEeCC-CCHHHHHHHHHHHHHHH
Confidence 457788999999998875 89999999999888775
No 39
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=21.02 E-value=1e+02 Score=24.38 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 75 VRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 75 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
.+...+++|.+.+.++..++|++ +|++...+.++++..++
T Consensus 7 ~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 47 (284)
T 3a1y_G 7 WKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRE 47 (284)
T ss_dssp CTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHh
Confidence 35567788888888877777664 67888888877777664
No 40
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=21.01 E-value=1.5e+02 Score=23.99 Aligned_cols=39 Identities=8% Similarity=0.210 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhh---ccceEeecCCC----CHHHHHHHHHHHHHh
Q 048821 77 CEIVKEIGIASSK---WGFFQVVNHDI----PQDIADEVIESIRRF 115 (188)
Q Consensus 77 ~~~~~~l~~Ac~~---~GFF~v~nHGI----~~~li~~~~~~~~~F 115 (188)
+++.+++++.++. -||..=.+||| |.+-+..+.+.++++
T Consensus 315 e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~p~env~a~v~~v~~~ 360 (367)
T 1r3s_A 315 EEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH 360 (367)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeeecCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3444444444443 47888888997 568888888888876
No 41
>3lxr_F IPGB2; RHOA, GTPase, GEF, GEF-GTPase-complex, WXXXE, TTSS EF protein, bacterial GEF, cytoskeleton dynamics; HET: GDP; 1.68A {Shigella flexneri} PDB: 3lwn_F* 3lw8_E* 3lyq_A*
Probab=20.83 E-value=78 Score=23.62 Aligned_cols=39 Identities=5% Similarity=0.150 Sum_probs=31.5
Q ss_pred HHHHHHHhhccceEeecCCCCHHHHHHHHHHHHHhhCCChhhhhc
Q 048821 81 KEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEK 125 (188)
Q Consensus 81 ~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~ 125 (188)
+.|.+.|.+. |+.|+.+.-+++|.....-|.++++.+..
T Consensus 81 k~ID~~c~~n------~~~Is~e~K~rIF~~v~~~~~~~LD~naA 119 (192)
T 3lxr_F 81 QCIDKFCAEH------SRKIGDNLRKQIFKQVEKDYRISLDINAA 119 (192)
T ss_dssp HHHHHHHHHH------TCCCCHHHHHHHHHHHHHHHTCCCCTTCC
T ss_pred HHHHHHHHhc------CCcCChHHHHHHHHHHHHHhCCccchhhh
Confidence 3455566553 56899999999999999999999998755
No 42
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=20.57 E-value=1.3e+02 Score=23.31 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHhhccceEeec-CCCCHHHHHHHHHHHHH
Q 048821 74 GVRCEIVKEIGIASSKWGFFQVVN-HDIPQDIADEVIESIRR 114 (188)
Q Consensus 74 ~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 114 (188)
..+.+..+.+.+||.+.|| .+-- -||+.+-+..+.+.+.+
T Consensus 170 l~~l~E~~avAka~a~~g~-~lEPTGGIdl~N~~~I~~i~l~ 210 (249)
T 3m0z_A 170 LKHRAEFEAVAKACAAHDF-WLEPTGGIDLENYSEILKIALD 210 (249)
T ss_dssp TTTHHHHHHHHHHHHHTTC-EEEEBSSCCTTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCc-eECCCCCccHhhHHHHHHHHHH
Confidence 3567788999999999999 5544 56999888888887754
Done!