BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048822
(686 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 101/414 (24%), Positives = 179/414 (43%), Gaps = 61/414 (14%)
Query: 293 DTLEREIASWITTFSQCTNVYFAGEHKLAEVVFAD-QPMIASSLFSNLIRGVMIQLLNFA 351
D L+ E ++I S + + L E++ Q SL + + G+M++ N
Sbjct: 191 DMLDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEHHQKKTFDSLIQDALDGLMLEGENIV 250
Query: 352 EAL--AMTKRSAEKLFKVLDMYECLRDNIPALNALVPDQCA---NELQNEMMVAKIRLGE 406
A A+ + + V + L+ P + ++ A N+L ++ + +G
Sbjct: 251 SAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTAASTKNKLPG-LITSMETIGA 309
Query: 407 AAIFMFCDLENSIKSDMAKT-TVPG-GAVHPLTRYTMNYLKYACEYKNTLEQVFREHWKI 464
A+ F D +IK+D K +P G VH LT + +L+ +++ T
Sbjct: 310 KALEDFAD---NIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETA---------- 356
Query: 465 ERTDSSSLSRQETEGEDQSCXXXXXXXXXASQPSPFAQQLVS-----VMDLLDQNLDAKS 519
+ L+ QET S F+++L+S V+ L NL +KS
Sbjct: 357 ----GAMLASQETSSSATSYSSE------------FSKRLLSTYICKVLGNLQLNLLSKS 400
Query: 520 KMYKDVSLSSIFMMNNGRYILQKIKGS--VEIHEAMGDTWCRKKSSDLRNYHKTYQRETW 577
K+Y+D +LS+IF+ NN YIL+ ++ S +++ T R + +TYQR +W
Sbjct: 401 KVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTYQR-SW 459
Query: 578 XXXXXXXXXXXXMANGKVVKP----------VLKEKFKSFNSMFDEIHRTQSTWVVSDDQ 627
N V +P ++KE+FK FN +E+ + Q W + D +
Sbjct: 460 LKVTDYIAE----KNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTE 515
Query: 628 LQSELRVSISSVVIPAYRSFMGRFSQYLDPGRQTEKYIKYQPEDIETYIDELFD 681
+ ++R + +V Y +F+ R+ + + EKYIKY+ E + ID LFD
Sbjct: 516 QRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFD 568
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 597 KPVLKEKFKSFNSMFDEIHRTQSTWVVSDDQLQSELRVSISSVVIPAYRSFMGRFSQYLD 656
K +KEKF+ FN F+++ + +SD L+ L+ I S+V+P Y F +S+Y D
Sbjct: 483 KEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERF---YSRYKD 539
Query: 657 PGRQTEKYIKYQPEDIETYIDEL 679
+ K+IKY P+++ T +++L
Sbjct: 540 SFKNPRKHIKYTPDELTTVLNQL 562
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 597 KPVLKEKFKSFNSMFDEIHRTQSTWVVSDDQLQSELRVSISSVVIPAYRSFMGRFSQYLD 656
K +KEKF+ FN F+++ + +SD L+ L+ I S+V+P Y F +S+Y D
Sbjct: 482 KEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERF---YSRYKD 538
Query: 657 PGRQTEKYIKYQPEDIETYIDEL 679
+ K+IKY P+++ T +++L
Sbjct: 539 SFKNPRKHIKYTPDELTTVLNQL 561
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 597 KPVLKEKFKSFNSMFDEIHRTQSTWVVSDDQLQSELRVSISSVVIPAYRSFMGRFSQYLD 656
K +KEKF+ FN F+++ + +SD L+ L+ I S+V P Y F +S+Y D
Sbjct: 485 KEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVXPXYERF---YSRYKD 541
Query: 657 PGRQTEKYIKYQPEDIETYIDEL 679
+ K+IKY P+++ T +++L
Sbjct: 542 SFKNPRKHIKYTPDELTTVLNQL 564
>pdb|2FJI|1 Chain 1, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
pdb|2FJI|2 Chain 2, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
Length = 399
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 20/237 (8%)
Query: 125 STPVLAEEDTLLFLDSVDRVTRLARKMSEMKLPENTSDQTYGVLNNRIGGVQQRAMSFLE 184
STP ++ D LLFLD ++ + E+ N + GV+ + +R +++
Sbjct: 43 STPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWIS 102
Query: 185 DEFRFILDQDIFNLDHKKDTTKENNQETDLKP--VAESNQSAEDPIINTPRVSLEVSSWL 242
I Q N +HK D E+ D P + E + + + ++ +SS
Sbjct: 103 KISEEIKKQ--INYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKY 160
Query: 243 NKMAKVMISGGYESECVEIYIIARRNAFDE--SLNNLGFEKISLDDVQKMHWDTLEREIA 300
K ++S YE + ++ + F E ++LG + DD++K + + +
Sbjct: 161 GK----LVSKVYEKQITN-HLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSK--- 212
Query: 301 SWITTFSQCTNVYFAGEHKLAEVVFADQPMIASSLFSNLIRGVMIQ-LLNFAEALAM 356
+W SQ + L E + +P + S LF N I V+ + ++ F AL+
Sbjct: 213 TWYMG-SQAQQI----ADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF 264
>pdb|1ZBA|1 Chain 1, Foot-And-Mouth Disease Virus Serotype A1061 Complexed With
Oligosaccharide Receptor.
pdb|1ZBE|1 Chain 1, Foot-And Mouth Disease Virus Serotype A1061
Length = 212
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 29/73 (39%)
Query: 374 LRDNIPALNALVPDQCANELQNEMMVAKIRLGEAAIFMFCDLENSIKSDMAKTTVPGGAV 433
+ D +N+L P + +Q L AA + F DLE ++ D T VP GA
Sbjct: 35 IMDRFVKINSLSPTHVIDLMQTHKHGIVGALLRAATYYFSDLEIVVRHDGNLTWVPNGAP 94
Query: 434 HPLTRYTMNYLKY 446
T N Y
Sbjct: 95 EAALSNTSNPTAY 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,906,222
Number of Sequences: 62578
Number of extensions: 693034
Number of successful extensions: 1672
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1662
Number of HSP's gapped (non-prelim): 10
length of query: 686
length of database: 14,973,337
effective HSP length: 105
effective length of query: 581
effective length of database: 8,402,647
effective search space: 4881937907
effective search space used: 4881937907
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)