Query 048822
Match_columns 686
No_of_seqs 229 out of 497
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 00:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 7E-101 2E-105 879.5 35.7 527 107-684 2-571 (571)
2 2b1e_A Exocyst complex compone 100.0 1.5E-92 5.3E-97 807.6 35.9 528 98-680 3-563 (564)
3 2d2s_A Exocyst complex compone 71.9 45 0.0015 33.1 13.0 95 239-355 91-188 (235)
4 2x5h_A ORF 131; viral protein; 38.1 5.3 0.00018 33.0 -0.6 19 645-669 78-96 (97)
5 4e9f_A Methyl-CPG-binding doma 23.2 78 0.0027 29.5 4.6 35 638-679 47-81 (161)
6 2wvq_A Small S protein; prion- 16.7 2.8E+02 0.0096 27.0 7.2 104 575-679 57-167 (225)
7 2a1d_D Staphylocoagulase; prot 16.5 2E+02 0.0069 29.6 6.1 83 598-681 124-228 (329)
8 1ji8_A Dissimilatory siroheme- 16.4 60 0.0021 28.5 1.9 41 639-684 54-94 (111)
9 3nft_A Translocator protein BI 15.2 1.2E+02 0.0042 30.8 4.1 42 639-682 142-190 (303)
10 2ket_A Cathelicidin-6; antimic 15.2 90 0.0031 19.6 1.9 17 603-619 2-18 (27)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=7e-101 Score=879.48 Aligned_cols=527 Identities=20% Similarity=0.313 Sum_probs=438.5
Q ss_pred HHhhcccccCCc--cccccccCCCCchhcHHHHHHHHHHHHHHHHHhhcccCCCCCCCccchhhhhhhHHHHHHHHHHHH
Q 048822 107 FEEKIPKHDLGV--DGKAKMSTPVLAEEDTLLFLDSVDRVTRLARKMSEMKLPENTSDQTYGVLNNRIGGVQQRAMSFLE 184 (686)
Q Consensus 107 ~e~~i~~~d~~~--e~~~~~~~p~~~~e~~~~yL~av~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~Ll~~am~~LE 184 (686)
+|++|++||+.. |++|.-| | .+++. .||+||++|++++.+|... +. .+..+.++++|+++||.+||
T Consensus 2 ae~v~~~~d~~~~~e~~i~~g-p--~~~l~-~yL~av~~l~~a~~~~~~~-------~~-~s~~l~~~~~Ll~~a~~~Le 69 (571)
T 2pft_A 2 SDHVISYYHVASDTEKIIREG-P--TGRLE-EYLGSMAKIQKAVEYFQDN-------SP-DSPELNKVKLLFERGKESLE 69 (571)
T ss_dssp -CTTSTHHHHHHHHHHHHHHC-C--TTCHH-HHHHHHHHHHHHHHHHHHH-------ST-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhhcC-c--HhhHH-HHHHHHHHHHHHHHHHHhc-------CC-ChHHHHHHHHHHHHHHHHHH
Confidence 578999999873 4455555 4 26677 9999999999999999851 11 33469999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCccccCcccCCCCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Q 048822 185 DEFRFILDQDIFNLDHKKDTTKENNQETDLKPVAESNQSAEDPIINTPRVSLEVSSWLNKMAKVMISGGYESECVEIYII 264 (686)
Q Consensus 185 ~eF~~lL~~~~~~~dp~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Ia~~m~~~g~~~ec~~~Y~~ 264 (686)
+||++||..++.|++|.++.....++. +. + + .+ ...++.+||+++.+|+.||++|+.+||.++|+++|++
T Consensus 70 ~eF~~lL~~~~~~~~p~~ll~~~~~~~-~~---~---~-~~--~~~~~~~~~~~~~~L~~Ia~~m~~~g~~~~~~~~Y~~ 139 (571)
T 2pft_A 70 SEFRSLMTRHSKVVSPVLLLDLISADD-EL---E---V-QE--DVVLEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQ 139 (571)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHTC-CC---C--------------SSCHHHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHhcCcCCChHHHHhcccccc-cc---C---c-cc--cccccCCCHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 999999999999999876421110001 00 0 0 01 1234589999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhc------------------------CCCccChhHhhccChhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048822 265 ARRNAFDESLNNL------------------------GFEKISLDDVQKMHWDTLEREIASWITTFSQCTNVYFAGEHKL 320 (686)
Q Consensus 265 ~R~~~l~~sL~~L------------------------g~e~~s~~~v~k~~we~le~~I~~Wi~al~~~v~~l~~~E~~L 320 (686)
+|+++++++|..| |.++.+..++++ +|+.++.+|..|+++++++++ ||++||+|
T Consensus 140 ~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~i~~wi~~~~~~~~-l~~~Er~L 217 (571)
T 2pft_A 140 IRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPG-RDDMLDVETDAYIHCVSAFVK-LAQSEYRL 217 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc-chHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999 444455555554 899999999999999998887 89999999
Q ss_pred HHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHH-hchhcH--HHHHHHHhHHHH---HHhhhHhHHhhccchhhHHHH
Q 048822 321 AEVVFADQPMIASSLFSNLIRGVMIQLLNFAEALA-MTKRSA--EKLFKVLDMYEC---LRDNIPALNALVPDQCANELQ 394 (686)
Q Consensus 321 ~~~Vf~~~~~~~~~~F~~i~~~~i~~Ll~F~eava-~~krsp--eklf~lLdmyea---L~~l~p~i~~lf~~~~~~~l~ 394 (686)
|++||+. ..+..||.+++++++.+|++||++|+ .++|+| +++|++|+||+. |+++.|+|+.+|.|..+ .++
T Consensus 218 ~~~vf~~--~~~~~~F~~i~~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~l~p~~~~~f~g~~~-~~~ 294 (571)
T 2pft_A 218 LMEIIPE--HHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTAA-STK 294 (571)
T ss_dssp HHHHSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHHHHHHHHHHTTTSCH-HHH
T ss_pred HHHHcCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHccCch-HHH
Confidence 9999985 56789999999999999999999997 588988 666665555555 99999999999998765 679
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccc-ccccCC-CCcccccHHHHHHHHHHHHhhHHHHHHHHhhccccccccCCcc
Q 048822 395 NEMMVAKIRLGEAAIFMFCDLENSIKSDM-AKTTVP-GGAVHPLTRYTMNYLKYACEYKNTLEQVFREHWKIERTDSSSL 472 (686)
Q Consensus 395 ~e~~~~l~~L~e~a~~~f~ef~~~I~~d~-sk~~~p-dG~VHplT~~vmnYL~~L~ey~~tL~~lL~~~~~~~~~~~~~~ 472 (686)
.++.+++++|+++++++|.||++.|++++ ++.++| ||+|||+|+||||||+.|++|+++|..+|.++..... .
T Consensus 295 ~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~y~~~l~~il~~~~~~~~-----~ 369 (571)
T 2pft_A 295 NKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSS-----A 369 (571)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhccCCCcc-----c
Confidence 99999999999999999999999999997 778888 9999999999999999999999999999986521100 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHhhhccccccccchhhhhhHHHHHHhhcCchhhhhh
Q 048822 473 SRQETEGEDQSCDNNNNDNNNASQPSPFAQQLVSVMDLLDQNLDAKSKMYKDVSLSSIFMMNNGRYILQKIKGSVEIHEA 552 (686)
Q Consensus 473 ~~~~~~~~~~s~~~~~~~~~~~~~~s~l~~~~~~ii~~L~~nLe~KSk~ykd~aL~~iFLmNN~~yI~~~v~~S~eL~~l 552 (686)
. . ..+..+.++|+.++.+||++|+.|||.|||.|+|++|++||||||+|||+++|++| +|..+
T Consensus 370 ---~------------~-~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s-~l~~l 432 (571)
T 2pft_A 370 ---T------------S-YSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKS-ELIQL 432 (571)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTS-THHHH
T ss_pred ---c------------c-CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhcc-chHHH
Confidence 0 0 00112356899999999999999999999999999999999999999999999997 99999
Q ss_pred hc---hhHHhHhHHHHHHHHHHHHHHhHHHHHhccccCCCCC---CC---CCChHHHHHHHHHHHHHHHHHHHhcccccc
Q 048822 553 MG---DTWCRKKSSDLRNYHKTYQRETWGRLLGCLGLDGLMA---NG---KVVKPVLKEKFKSFNSMFDEIHRTQSTWVV 623 (686)
Q Consensus 553 LG---~~w~~~~~~~v~q~~~~Y~r~sW~~vl~~L~~~~~~~---~~---~~~k~~iKerFk~FN~~FEEi~~~Q~~w~V 623 (686)
|| ++|++++..++++|++.| +++|++|++||.+++.+. ++ ..+|+.+||||++||.+|||+|++|+.|+|
T Consensus 433 lg~~~~~~~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~V 511 (571)
T 2pft_A 433 VAVTQKTAERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAI 511 (571)
T ss_dssp HHTTCTTHHHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99 689999999999999999 899999999999876532 22 236899999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccCHHHHHHHHHhhhCCCC
Q 048822 624 SDDQLQSELRVSISSVVIPAYRSFMGRFSQYLDPGRQTEKYIKYQPEDIETYIDELFDGKR 684 (686)
Q Consensus 624 pD~~LR~~Lr~~I~~~ViPaYr~F~~ry~~~~~~~k~~~KYIKYtpedlE~~L~~LFeg~~ 684 (686)
|||+||++||.+|+++|+|+|++||+||++ ++|+||++|||||||+|||++|++||+|++
T Consensus 512 pD~~LR~~Lr~~i~~~v~paY~~F~~r~~~-~~~~k~~~KyiKytpe~le~~L~~LFeg~a 571 (571)
T 2pft_A 512 PDTEQRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFDTSA 571 (571)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCCSCHHHHCCCCHHHHHHHHHTSSSCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhCc-CcccCCCCCccccCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999 799999999999999999999999999974
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=1.5e-92 Score=807.65 Aligned_cols=528 Identities=16% Similarity=0.202 Sum_probs=425.9
Q ss_pred hhHHHHHHHHHhhcccccCC--ccccccccCCCCchhcHHHHHHHHHHHHHHHHHhhcccCCCCCCCc--cchhhhhhhH
Q 048822 98 EVVWRFLDLFEEKIPKHDLG--VDGKAKMSTPVLAEEDTLLFLDSVDRVTRLARKMSEMKLPENTSDQ--TYGVLNNRIG 173 (686)
Q Consensus 98 ~nIe~~l~~~e~~i~~~d~~--~e~~~~~~~p~~~~e~~~~yL~av~~l~~~~~~l~~~~~~~~~~~~--~~~~~l~~a~ 173 (686)
+|||+++++|+++..++|.. .|.+|+-| +.+++.. .||+||++|++++++|+. ++.+++. .+.+.+.++.
T Consensus 3 ~NId~~l~~i~~v~~~~~~~~~~e~iI~~G--p~~~~l~-~Yl~al~rl~~al~~~~~---~n~~s~e~~~f~g~l~~~~ 76 (564)
T 2b1e_A 3 MNIESTLNSVASVKDLANEASKYEIILQKG--INQVGLK-QYTQVVHKLDDMLEDIQS---GQANREENSEFHGILTHLE 76 (564)
T ss_dssp -----CCGGGCCHHHHHHHHHHHHHHHHTC--HHHHCHH-HHHHHHHHHHHHHHHHHC-------CCCSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CccccHH-HHHHHHHHHHHHHHHHHh---cCCCchhhhhhHHHHHHHH
Confidence 69999999999999999976 36788877 4446677 999999999999999986 2233322 3567899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccCcccCCCCcccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC
Q 048822 174 GVQQRAMSFLEDEFRFILDQDIFNLDHKKDTTKENNQETDLKPVAESNQSAEDPIINTPRVSLEVSSWLNKMAKVMISGG 253 (686)
Q Consensus 174 ~Ll~~am~~LE~eF~~lL~~~~~~~dp~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Ia~~m~~~g 253 (686)
+|+++|+.+||.+|+.||.. +.|++|.... +++ .+||.+|++++.+|+.||++|+.+|
T Consensus 77 ~L~~~g~~~L~~~F~~lL~~-s~p~~p~~~i------------------~k~---~p~p~l~~~~l~~L~~Ia~~m~~~g 134 (564)
T 2b1e_A 77 QLIKRSEAQLRVYFISILNS-IKPFDPQINI------------------TKK---MPFPYYEDQQLGALSWILDYFHGNS 134 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SCCCCHHHHH------------------HHT---CCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCCHHHhh------------------ccC---CCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999994 6666665421 111 5788999999999999999999999
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHhcCCCccChhHhhccChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 048822 254 YESECVEIYIIARRNAFDESLNNLGFEKISLDDVQKMHWDTLEREIASWITTFSQCTNVYFAGEHKLAEVVFADQPMIAS 333 (686)
Q Consensus 254 ~~~ec~~~Y~~~R~~~l~~sL~~Lg~e~~s~~~v~k~~we~le~~I~~Wi~al~~~v~~l~~~E~~L~~~Vf~~~~~~~~ 333 (686)
|.++|+++|+++|+.+++++|+.|+....++...++++|+.+++.|..|+.++ ..||.+|+.||++||+..++.+.
T Consensus 135 ~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~----~~l~~~E~~L~~~vf~~~~~~~~ 210 (564)
T 2b1e_A 135 EGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL----LGFIANEKSLVDDLYSQYTESKP 210 (564)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH----HHHHHHHHHHHHHHSCTTCTTHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH----HHHHHHHHHHHHHHcCCcchhhH
Confidence 99999999999999999999999964444566778899999999999999998 47999999999999998777889
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HhchhcH-HHHHHHHhHHHHHHhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 048822 334 SLFSNLIRGVMIQLLNFAEAL-AMTKRSA-EKLFKVLDMYECLRDNIPALNALVPDQCANELQNEMMVAKIRLGEAAIFM 411 (686)
Q Consensus 334 ~~F~~i~~~~i~~Ll~F~eav-a~~krsp-eklf~lLdmyeaL~~l~p~i~~lf~~~~~~~l~~e~~~~l~~L~e~a~~~ 411 (686)
.||..++++++..+...++.+ +.++++| +++|.+|+||++|.++. .+|.+..+.. +.++..++++|+++++++
T Consensus 211 ~~f~~i~~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~l~~~~----~~~~~~~~~~-~~~~~~~l~~L~~~~~~~ 285 (564)
T 2b1e_A 211 HVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVK----KSLRGKELQN-YNLLQDCTQEVRQVTQSL 285 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHHH----HHTTTCCCTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcchhHHHHHHHHHHHH----HHHcccccch-HHHHHHHHHHHHHHHHHH
Confidence 999999999998554444432 2467888 89999999999998766 5676644333 488999999999999999
Q ss_pred HHHhHHHHhcccccc-cC-CCCcccccHHHHHHHHHHHHhhHHHHHHHHhh----ccccccccCCcccccccccccccCC
Q 048822 412 FCDLENSIKSDMAKT-TV-PGGAVHPLTRYTMNYLKYACEYKNTLEQVFRE----HWKIERTDSSSLSRQETEGEDQSCD 485 (686)
Q Consensus 412 f~ef~~~I~~d~sk~-~~-pdG~VHplT~~vmnYL~~L~ey~~tL~~lL~~----~~~~~~~~~~~~~~~~~~~~~~s~~ 485 (686)
|.||++.|+++.++. ++ +||||||+|+||||||+.|++|+++|..+|.+ +|..... +. ..++ +
T Consensus 286 ~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~~y~~~l~~~l~~~~~~~~~~~~~---~~---~~~~-----~ 354 (564)
T 2b1e_A 286 FRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGAMDNITRENWLPSNY---KE---KEYT-----L 354 (564)
T ss_dssp HHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHGGGHHHHHHHTTTCCGGGTSCTTC---CG---GGSC-----C
T ss_pred HHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCcccc---cc---cccc-----c
Confidence 999999999987654 44 59999999999999999999999999999974 3322100 00 0000 0
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHh------------------hhccccccccchhhhhhHHHHHHhhcCch
Q 048822 486 NNNNDNNNASQPSPFAQQLVSVMDLLDQNLDAK------------------SKMYKDVSLSSIFMMNNGRYILQKIKGSV 547 (686)
Q Consensus 486 ~~~~~~~~~~~~s~l~~~~~~ii~~L~~nLe~K------------------Sk~ykd~aL~~iFLmNN~~yI~~~v~~S~ 547 (686)
..... .+..+.++|+.++.++|++|++|||+| |+.|+|++|+ +|||||+|||+++|++|
T Consensus 355 ~~~~~-~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v~~S- 431 (564)
T 2b1e_A 355 QNEAL-NWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIVEKS- 431 (564)
T ss_dssp CC-----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHHHTS-
T ss_pred ccccc-cCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHHhhh-
Confidence 00000 122345789999999999999999999 4679999985 69999999999999987
Q ss_pred hhhhhhchhHHhHhHHHHHHHHHHHHHHhHHHHHhccccCCCC-CC--CCCChHHHHHHHHHHHHHHHHHHHhccccccc
Q 048822 548 EIHEAMGDTWCRKKSSDLRNYHKTYQRETWGRLLGCLGLDGLM-AN--GKVVKPVLKEKFKSFNSMFDEIHRTQSTWVVS 624 (686)
Q Consensus 548 eL~~lLG~~w~~~~~~~v~q~~~~Y~r~sW~~vl~~L~~~~~~-~~--~~~~k~~iKerFk~FN~~FEEi~~~Q~~w~Vp 624 (686)
+|..+||++|+++|...+++| +.|++++|++|++||.+++.. .+ +..+|+.+||||++||++|||+|++|+.|+||
T Consensus 432 eL~~lLg~~~~~~~~~~~~~~-~~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~w~vp 510 (564)
T 2b1e_A 432 ELNLMLAGEGHSRLERLKKRY-ISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLS 510 (564)
T ss_dssp THHHHTTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hhHhHhcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHhcCcccCc
Confidence 899999999999999989999 589999999999999886532 11 24689999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCccccccCHHHHHHHHHhhh
Q 048822 625 DDQLQSELRVSISSVVIPAYRSFMGRFSQYLDPGRQTEKYIKYQPEDIETYIDELF 680 (686)
Q Consensus 625 D~~LR~~Lr~~I~~~ViPaYr~F~~ry~~~~~~~k~~~KYIKYtpedlE~~L~~LF 680 (686)
||+||++||.+|+++|+|+|++||+||+. ++||++|||||||+|||++|++|+
T Consensus 511 D~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~---~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 511 DPSLKVTLKSEIISLVMPMYERFYSRYKD---SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHGG---GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccCCCCCcccCCHHHHHHHHHHhc
Confidence 99999999999999999999999999988 589999999999999999999996
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.94 E-value=45 Score=33.06 Aligned_cols=95 Identities=15% Similarity=0.217 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHhhHHHHHHHHhcCCCccChhHhhccChhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048822 239 SSWLNKMAKVMISGGYESECVEIYIIARRNAFDESLNNLGFEKISLDDVQKMHWDTLEREIASWITTFSQCTNVYFAGEH 318 (686)
Q Consensus 239 v~~L~~Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~Lg~e~~s~~~v~k~~we~le~~I~~Wi~al~~~v~~l~~~E~ 318 (686)
...++.....|+..|.....+..|-..|+..+...+..++.+ +....|+..+-. +.|..=+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~----------------gd~~~Yi~~Ls~---i~Fs~I~ 151 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSV----------------DNPTNYLTQLAV---IRFQTIK 151 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--C----------------CSHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhccc----------------CCHHHHHHHHHH---HHHHHHH
Confidence 467888999999999999999999999999999999877544 123456665543 2333222
Q ss_pred HH---HHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 048822 319 KL---AEVVFADQPMIASSLFSNLIRGVMIQLLNFAEALA 355 (686)
Q Consensus 319 ~L---~~~Vf~~~~~~~~~~F~~i~~~~i~~Ll~F~eava 355 (686)
+- -..+|+..+ ..|++.++.=+...+-.|+..+.
T Consensus 152 ~t~~~f~~~F~~~~---~~~~S~lV~Wa~~eve~f~~l~~ 188 (235)
T 2d2s_A 152 KTVEDFQDIFKELG---AKISSILVDWCSDEVDNHFKLID 188 (235)
T ss_dssp HHHHHHHHHSTTCC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC---cccccHHHHHHHHHHHHHHHHHH
Confidence 22 234776521 24555655555666666666654
No 4
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=38.11 E-value=5.3 Score=33.02 Aligned_cols=19 Identities=32% Similarity=1.008 Sum_probs=11.4
Q ss_pred HHHHHhhccCCCCCCCCccccccCH
Q 048822 645 RSFMGRFSQYLDPGRQTEKYIKYQP 669 (686)
Q Consensus 645 r~F~~ry~~~~~~~k~~~KYIKYtp 669 (686)
..|++||.+++ .|||||+|
T Consensus 78 a~FLeKYS~~L------nkYVkF~~ 96 (97)
T 2x5h_A 78 AEFLEKYSDFL------NEYVKFTP 96 (97)
T ss_dssp HHHHHHTHHHH------HHHC----
T ss_pred HHHHHHHHHHH------HHhhcccc
Confidence 56888888764 48999886
No 5
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=23.23 E-value=78 Score=29.46 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCccccccCHHHHHHHHHhh
Q 048822 638 SVVIPAYRSFMGRFSQYLDPGRQTEKYIKYQPEDIETYIDEL 679 (686)
Q Consensus 638 ~~ViPaYr~F~~ry~~~~~~~k~~~KYIKYtpedlE~~L~~L 679 (686)
+.|.|+|.+|+++|.. ++...+-+.++|+.+|..+
T Consensus 47 ~~v~~~~~~l~~~~pt-------~~~la~a~~~el~~~i~~l 81 (161)
T 4e9f_A 47 KMAIPVLWKFLEKYPS-------AEVARTADWRDVSELLKPL 81 (161)
T ss_dssp HHHHHHHHHHHHHSCS-------HHHHTTSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHCCC-------HHHHhccChHhHHhHhhhc
Confidence 5789999999999853 6788888999999999876
No 6
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=16.73 E-value=2.8e+02 Score=27.01 Aligned_cols=104 Identities=11% Similarity=0.192 Sum_probs=56.0
Q ss_pred HhHHHHHhccccCCCCCC-C-CCChHHHHHHHHHHHHHHHHHHHhcccccc--cchHHHHHHHHHHHHHHHHHHH---HH
Q 048822 575 ETWGRLLGCLGLDGLMAN-G-KVVKPVLKEKFKSFNSMFDEIHRTQSTWVV--SDDQLQSELRVSISSVVIPAYR---SF 647 (686)
Q Consensus 575 ~sW~~vl~~L~~~~~~~~-~-~~~k~~iKerFk~FN~~FEEi~~~Q~~w~V--pD~~LR~~Lr~~I~~~ViPaYr---~F 647 (686)
..|+..+....+...... + ....+.++.-+..--..|+++-+.|..|.. |++++...=-..+...+-+.|. .|
T Consensus 57 ~~WG~avGL~~~~~~~~~l~~~~~~~~v~~iL~~I~~lf~~~~~l~~Ry~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~ 136 (225)
T 2wvq_A 57 SRWGEAVKINDDPRFHSDAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDLVVFEDKDMKPIGRALHRRLNDL 136 (225)
T ss_dssp HHHHHHTTTTTCGGGGCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGGCBCCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccChhhHHHHHHHHHHHHHHH
Confidence 469999988764422211 1 122557788888888888888777766664 3322211000011112223333 23
Q ss_pred HHhhccCCCCCCCCccccccCHHHHHHHHHhh
Q 048822 648 MGRFSQYLDPGRQTEKYIKYQPEDIETYIDEL 679 (686)
Q Consensus 648 ~~ry~~~~~~~k~~~KYIKYtpedlE~~L~~L 679 (686)
..+-+. .-.....-+++-|+.+.++.+|.+|
T Consensus 137 ~~~rq~-~~s~~~r~~Wai~Dk~~F~~LV~~i 167 (225)
T 2wvq_A 137 VSRRQK-QTSLAKKTAWALYDGKSLEKIVDQV 167 (225)
T ss_dssp HHHHSC-CCCSCCCCCEEECSHHHHHHHHHHH
T ss_pred HHhccc-cCCccceeeeeeechHHHHHHHHHH
Confidence 322222 1122344577779999999998876
No 7
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus aureus}
Probab=16.46 E-value=2e+02 Score=29.56 Aligned_cols=83 Identities=18% Similarity=0.289 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH---HHHHHHHHHHHHHh--hccC-----------CCCCCCC
Q 048822 598 PVLKEKFKSFNSMFDEIHRTQSTWVVSDDQLQSELRVSI---SSVVIPAYRSFMGR--FSQY-----------LDPGRQT 661 (686)
Q Consensus 598 ~~iKerFk~FN~~FEEi~~~Q~~w~VpD~~LR~~Lr~~I---~~~ViPaYr~F~~r--y~~~-----------~~~~k~~ 661 (686)
..||+--..|+..-++|...++..+=.|.+-..+....| ...|.-.|..|++. |+.. +...+++
T Consensus 124 ~sLK~a~~eF~keV~~I~~kn~DLK~f~~~~e~ka~~elndL~nei~~Lg~tf~~~~~~~~~a~eL~aKLDlIlG~~~~~ 203 (329)
T 2a1d_D 124 ESLKSAVKDFEKDVEKIENQHHDLKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKP 203 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSGGGSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhccccCc
Confidence 678999999999999999888888777766666665543 44566777788776 3311 1112221
Q ss_pred cccc------ccCHHHHHHHHHhhhC
Q 048822 662 EKYI------KYQPEDIETYIDELFD 681 (686)
Q Consensus 662 ~KYI------KYtpedlE~~L~~LFe 681 (686)
++| +=-.+||+.+|++||.
T Consensus 204 -~ritNeRi~ke~ieDLeSIIDdFF~ 228 (329)
T 2a1d_D 204 -HRISNERIEKEMIKDLESIIEDFFI 228 (329)
T ss_dssp -CCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccchHHHHHHHHHHHHHHHHHHHH
Confidence 221 2336899999999997
No 8
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=16.45 E-value=60 Score=28.50 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCccccccCHHHHHHHHHhhhCCCC
Q 048822 639 VVIPAYRSFMGRFSQYLDPGRQTEKYIKYQPEDIETYIDELFDGKR 684 (686)
Q Consensus 639 ~ViPaYr~F~~ry~~~~~~~k~~~KYIKYtpedlE~~L~~LFeg~~ 684 (686)
.||-.-|.||.+|+.. ..-|. -+|+....+.. |-+||-+.+
T Consensus 54 ~VI~flR~~Y~e~~~~-P~iR~---l~K~~~~~~s~-Ly~LFP~GP 94 (111)
T 1ji8_A 54 KLVKYLREYWETFGTC-PPIKM---VTKETGFSLEK-IYQLFPSGP 94 (111)
T ss_dssp HHHHHHHHHTTTTSCC-CCSTT---GGGGSCCCHHH-HHHHTTSCH
T ss_pred HHHHHHHHHHHHHCCC-CcHHH---HHHHHHHHHHH-HHHHCCCCH
Confidence 4788889999999873 33444 45555555555 999996543
No 9
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=15.17 E-value=1.2e+02 Score=30.82 Aligned_cols=42 Identities=14% Similarity=0.426 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcc-------CCCCCCCCccccccCHHHHHHHHHhhhCC
Q 048822 639 VVIPAYRSFMGRFSQ-------YLDPGRQTEKYIKYQPEDIETYIDELFDG 682 (686)
Q Consensus 639 ~ViPaYr~F~~ry~~-------~~~~~k~~~KYIKYtpedlE~~L~~LFeg 682 (686)
.|+-.|..||+-|.. ++.. .-.|.||+.+..+.+-|+++.+.
T Consensus 142 ~IVk~YTdyyQdfNe~LSKlSd~IsA--kDGN~IKFD~~sfk~~l~~l~~k 190 (303)
T 3nft_A 142 TIVEGLTKYFQSVADVMSKLQDYISA--KDDKNMKIDGGKIKALIQQVIDH 190 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGEEE--ETTTEEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc--cCCCeeeecHHHHHHHHHHHHHh
Confidence 466666666666553 2222 33577999999999999887653
No 10
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=15.15 E-value=90 Score=19.63 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhcc
Q 048822 603 KFKSFNSMFDEIHRTQS 619 (686)
Q Consensus 603 rFk~FN~~FEEi~~~Q~ 619 (686)
||++|-..|..+++.-+
T Consensus 2 rfkrfrkkfkklfkkls 18 (27)
T 2ket_A 2 RFKRFRKKFKKLFKKLS 18 (27)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 68899999998887643
Done!