BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048823
(699 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 267/615 (43%), Positives = 363/615 (59%), Gaps = 30/615 (4%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDAL 137
FDVI++GGGHAG EAA+A+AR+G +TLLLT NID + CNPA+GG K LV EVDAL
Sbjct: 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 88
Query: 138 GGEIGKVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVT 197
GG + K D +Q R+LN S+GPAV A RAQ D+ Y ++ +E+ NL I + V
Sbjct: 89 GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 148
Query: 198 DILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTE 257
D+++ +ND V G T G+ F A +VVLT GTF+ GKI +G + GRAG+ S L+
Sbjct: 149 DLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSR 207
Query: 258 NLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPDFHIEREQMCCYLT 317
L+ L RLKTGTP R+D RT+DFS L QHGD + FSF + +Q+ CY+T
Sbjct: 208 RLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYIT 267
Query: 318 RTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK---------------------- 355
T ++TH +I+ NL +P Y G +E GPRYCP+IEDK
Sbjct: 268 HTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSN 327
Query: 356 -----GFSXXXXXXXXXXXXXXXXXXXNCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGL 410
G S N ++RP YA+EYD+ +L +K ++GL
Sbjct: 328 EIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGL 387
Query: 411 FFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLIDDLVTKDLREP 470
FF+GQINGTTGYEEAAAQG+++G+NAAR S K R +Y+G L+DDL T +EP
Sbjct: 388 FFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEP 447
Query: 471 YRMLTSRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRI 530
YRM TSR+E+RL+LR DNAD RLT +GRELGL+DD RW + +KL + E++RLK+ +
Sbjct: 448 YRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWV 507
Query: 531 S-GGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEID 588
+ + AA+V P+ ++ E LL++P + YE L F L + VEI
Sbjct: 508 TPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQ 567
Query: 589 IKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQTIGQASRVG 648
+KYEG+I R + LP LDY ++ LS E KL+ +P +IGQASR+
Sbjct: 568 VKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRIS 627
Query: 649 GVSPADITALLIILE 663
GV+PA I+ LL+ L+
Sbjct: 628 GVTPAAISILLVWLK 642
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 267/615 (43%), Positives = 363/615 (59%), Gaps = 30/615 (4%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDAL 137
FDVI++GGGHAG EAA+A+AR+G +TLLLT NID + CNPA+GG K LV EVDAL
Sbjct: 27 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 86
Query: 138 GGEIGKVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVT 197
GG + K D +Q R+LN S+GPAV A RAQ D+ Y ++ +E+ NL I + V
Sbjct: 87 GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 146
Query: 198 DILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTE 257
D+++ +ND V G T G+ F A +VVLT GTF+ GKI +G + GRAG+ S L+
Sbjct: 147 DLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSR 205
Query: 258 NLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPDFHIEREQMCCYLT 317
L+ L RLKTGTP R+D RT+DFS L QHGD + FSF + +Q+ CY+T
Sbjct: 206 RLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYIT 265
Query: 318 RTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK---------------------- 355
T ++TH +I+ NL +P Y G +E GPRYCP+IEDK
Sbjct: 266 HTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSN 325
Query: 356 -----GFSXXXXXXXXXXXXXXXXXXXNCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGL 410
G S N ++RP YA+EYD+ +L +K ++GL
Sbjct: 326 EIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGL 385
Query: 411 FFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLIDDLVTKDLREP 470
FF+GQINGTTGYEEAAAQG+++G+NAAR S K R +Y+G L+DDL T +EP
Sbjct: 386 FFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEP 445
Query: 471 YRMLTSRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRI 530
YRM TSR+E+RL+LR DNAD RLT +GRELGL+DD RW + +KL + E++RLK+ +
Sbjct: 446 YRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWV 505
Query: 531 S-GGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEID 588
+ + AA+V P+ ++ E LL++P + YE L F L + VEI
Sbjct: 506 TPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQ 565
Query: 589 IKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRPQTIGQASRVG 648
+KYEG+I R + LP LDY ++ LS E KL+ +P +IGQASR+
Sbjct: 566 VKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRIS 625
Query: 649 GVSPADITALLIILE 663
GV+PA I+ LL+ L+
Sbjct: 626 GVTPAAISILLVWLK 640
>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
Length = 637
Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/627 (43%), Positives = 374/627 (59%), Gaps = 52/627 (8%)
Query: 72 WNIDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLV 131
W +DE FDV+V+GGGHAG EAALA+AR+GAKT + LN D I CNPA+GG AK +V
Sbjct: 23 WVVDE-FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVV 81
Query: 132 HEVDALGGEIGKVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCI 191
E+DALGGE+GK D +Q ++LNT +G AV + RAQ DK+ Y MK + E+ NL I
Sbjct: 82 REIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYI 141
Query: 192 REAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESA 251
++ V DI++ KN+ V GV T G+ + +VV+TTGTF++G I++G +P GR GE
Sbjct: 142 KQEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPR 200
Query: 252 SHGLTENLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPD------F 305
S GL++ +R F R KTGTP+R+D RT+DFS LE GD+ FSF + F
Sbjct: 201 SEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGDDPPPKFSFWTEPVGSYWF 260
Query: 306 HIEREQMCCYLTRTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK---------- 355
+EQ+ C++T TT +TH++I+ NLH T YGG ++ GPRYCP+IEDK
Sbjct: 261 PKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDKERH 320
Query: 356 -----------------GFSXXXXXXXXXXXXXXXXXXXNCSMLRPAYAVEYDYLPAHQC 398
G S N ++RPAYA+EYD +P +
Sbjct: 321 QIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTEL 380
Query: 399 YRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTL 458
Y +L TKK+ GLF +G NGTTGYEEAA QGI++GINAA + GK I L R+ SY+G +
Sbjct: 381 YPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVM 440
Query: 459 IDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARV 518
IDDL TK + EPYR+ TSRSE+RL +R DNA RL LGRELGL+ + ++K+ ++ +
Sbjct: 441 IDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYKLVKELEREI 500
Query: 519 SEEKRRLKTVRIS---GGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNG 575
+ K K+ R+S GGD TR S ++ +L+ + ++ +K G+
Sbjct: 501 EKWKEFYKSERVSVAVGGD-----TR--------SYSVATLMTMNYTLDDVKEKFGYEVP 547
Query: 576 LLSRAEKQCVEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSK 635
K+ VEI +KYE +I R +PPD+DY + L+ E+REKL K
Sbjct: 548 QHPYV-KEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKK 606
Query: 636 VRPQTIGQASRVGGVSPADITALLIIL 662
+P T+GQASR+ G++PA ITALL+ L
Sbjct: 607 FKPITVGQASRIDGITPAAITALLVYL 633
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 253/624 (40%), Positives = 355/624 (56%), Gaps = 45/624 (7%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDAL 137
+DVIVVG GHAGCEAALA AR G LL+T ++ +A CNPA+GG AK Q+ E+DAL
Sbjct: 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDAL 81
Query: 138 GGEIGKVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVT 197
GGE+GK D +Q R+LN S+GPA+ + RAQ DK +Y++ M+ IVE N+ ++
Sbjct: 82 GGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNI----DLLQ 137
Query: 198 DILLGKNDN---VEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRA-GESASH 253
D ++G + N V G A + +L GTF++G I +G P GR+ E
Sbjct: 138 DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVE 197
Query: 254 GLTENLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPDFHIEREQMC 313
GLTE+L LGF RLKTGTP R+D R+VD++ + Q GD + FSF R +
Sbjct: 198 GLTESLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGDVDPVPFSFSSTSVANRNLVS 257
Query: 314 CYLTRTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK------------------ 355
CYLT+TT++TH +++ +P + G V+ GPRYCP+IEDK
Sbjct: 258 CYLTKTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPEG 317
Query: 356 ---------GFSXXXXXXXXXXXXXXXXXXXNCSMLRPAYAVEYDYLPAHQCYRSLMTKK 406
GFS M+RP YA+EYD+ Q ++ T+
Sbjct: 318 TDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRP 377
Query: 407 VEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLIDDLVTKD 466
VE LFF+GQINGT+GYEEAAAQG+++GINA R GK LIVL R+ +Y+G LIDDL+TK+
Sbjct: 378 VENLFFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITKE 437
Query: 467 LREPYRMLTSRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLK 526
+EPYRM TS +EHRL+LR DNAD RL +G + L+ + + RV +K
Sbjct: 438 TKEPYRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVMK 497
Query: 527 TVRISGGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQC-- 584
T +++ ++ + Q +K + SL+K+P I + + +H + S AE+ C
Sbjct: 498 TAKVTPAEINTLLMNKGLQELKTPARALSLIKRPGISLQDILEHSL--SVRSAAEELCND 555
Query: 585 ------VEIDIKYEGFIVRXXXXXXXXXXXXHRPLPPDLDYYAMTTLSLESREKLSKVRP 638
V+I+IKYEG+I R +P + +Y ++ +LS E REKL K RP
Sbjct: 556 PRVAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHRP 615
Query: 639 QTIGQASRVGGVSPADITALLIIL 662
TIGQASR+ GVSP+D++ L+I L
Sbjct: 616 ATIGQASRILGVSPSDVSILMIRL 639
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/545 (44%), Positives = 325/545 (59%), Gaps = 30/545 (5%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDAL 137
FDVI++GGGHAG EAA+A+AR+G +TLLLT NID + CNPA+GG K LV EVDAL
Sbjct: 33 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDAL 92
Query: 138 GGEIGKVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVT 197
GG + K D +Q R+LN S+GPAV A RAQ D+ Y ++ +E+ NL I + V
Sbjct: 93 GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVE 152
Query: 198 DILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTE 257
D+++ +ND V G T G+ F A +VVLT GTF+ GKI +G + GRAG+ S L+
Sbjct: 153 DLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSR 211
Query: 258 NLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPDFHIEREQMCCYLT 317
L+ L RLKTGTP R+D RT+DFS L QHGD + FSF + +Q+ CY+T
Sbjct: 212 RLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVPCYIT 271
Query: 318 RTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK---------------------- 355
T ++TH +I+ NL +P Y G +E GPRYCP+IEDK
Sbjct: 272 HTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSN 331
Query: 356 -----GFSXXXXXXXXXXXXXXXXXXXNCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGL 410
G S N ++RP YA+EYD+ +L +K ++GL
Sbjct: 332 EIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGL 391
Query: 411 FFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLIDDLVTKDLREP 470
FF+GQINGTTGYEEAAAQG+++G+NAAR SD K R +Y+G L+DDL T +EP
Sbjct: 392 FFAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYLGVLVDDLCTLGTKEP 451
Query: 471 YRMLTSRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRI 530
YRM TSR+E+RL+LR DNAD RLT +GRELGL+DD RW + +KL + E++RLK+ +
Sbjct: 452 YRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERERQRLKSTWV 511
Query: 531 S-GGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDK-HGFGNGLLSRAEKQCVEID 588
+ + AA+V P+ ++ E LL++P + YE L F L + VEI
Sbjct: 512 TPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQ 571
Query: 589 IKYEG 593
+KYEG
Sbjct: 572 VKYEG 576
>pdb|2CUL|A Chain A, Crystal Structure Of The Gida-Related Protein From Thermus
Thermophilus Hb8
Length = 232
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 92/221 (41%), Gaps = 36/221 (16%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDAL 137
+ V++VG G +G E A A+ G + LLT ++D + P P S L D
Sbjct: 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYD-- 61
Query: 138 GGEIGKVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVT 197
+ VWA A R K ++E L + +A T
Sbjct: 62 --------------------PKDERVWAFHA---------RAKYLLEGLRPLHLFQATAT 92
Query: 198 DILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTE 257
+LL + + V GV T+ G VVL G+F+ ++++G AGR E++ L E
Sbjct: 93 GLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLE 151
Query: 258 NLQRLGF---ETDRLKTGTPSRVDLRTVDFSGLEPQHGDEE 295
+L RLGF E + TPS R V + P+ +E+
Sbjct: 152 DLSRLGFRFVEREGEVPETPSTPGYR-VRYLAFHPEEWEEK 191
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Tetrahydrofolate
Length = 443
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 401 SLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLID 460
+L ++ EGL+ +G + G GY E+AA G ++G+NAAR + G V E S +G L+
Sbjct: 322 TLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLP-PVAPPEESMLGGLVR 380
Query: 461 DLVTKD 466
L T +
Sbjct: 381 YLATAN 386
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Glutathione
Length = 443
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 401 SLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLID 460
+L ++ EGL+ +G + G GY E+AA G ++G+NAAR + G V E S +G L+
Sbjct: 322 TLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLP-PVAPPEESXLGGLVR 380
Query: 461 DLVTKD 466
L T +
Sbjct: 381 YLATAN 386
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 77 RFDVIVVGGGHAGCEAALASARLGAKTLLL-TLNIDKIAWQPCNPAV 122
++DV+++GGG AG AA +R G K LL+ + ++I +PC AV
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV 52
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGG 124
++FDVIV+G G G AA+ SA+LG KT L I+K + A+GG
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTAL----IEKYKGKEGKTALGG 46
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLL 106
E+FDVI+VG G A AAL SAR KTL++
Sbjct: 14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVI 44
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKI 113
E DV+V+G G AG AA + +GA +L +NIDK+
Sbjct: 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKL 204
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKI 113
E DV+V+G G AG AA + +GA +L +NIDK+
Sbjct: 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKL 204
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKI 113
E DV+V+G G AG AA + +GA +L +NIDK+
Sbjct: 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKL 204
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLL 106
E+FDVI+VG G A AAL SAR KTL++
Sbjct: 14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVI 44
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKI 113
+DVIVVGGG +G AAL AR G K L+L K+
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV 37
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNI--DKIAW 115
+DV+++GGG AG AA+ + R TL+L + +IAW
Sbjct: 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAW 48
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 77 RFDVIVVGGGHAGCEAALASARLGAKTLLL 106
FDVIVVG G G A A+ G KTLL+
Sbjct: 4 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 33
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 77 RFDVIVVGGGHAGCEAALASARLGAKTLLL 106
FDVIVVG G G A A+ G KTLL+
Sbjct: 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 77 RFDVIVVGGGHAGCEAALASARLGAKTLLL 106
FDVIVVG G G A A+ G KTLL+
Sbjct: 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 77 RFDVIVVGGGHAGCEAALASARLGAKTLLL 106
FDVIVVG G G A A+ G KTLL+
Sbjct: 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
Length = 389
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 77 RFDVIVVGGGHAGCEAALASARLGAKTLLL 106
FDVIVVG G G A A+ G KTLL+
Sbjct: 3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLV 32
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDK 112
++FDV+V+G G G AA+ +A+LG KT + I K
Sbjct: 2 QKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGK 38
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 77 RFDVIVVGGGHAGCEAALASARLGAKTLLL 106
FDVIVVG G G A A+ G KTLL+
Sbjct: 3 HFDVIVVGAGSMGMAAGYYLAKQGVKTLLV 32
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 74 IDERFDVIVVGGGHAGCEAALASARLGAKT 103
I++ DV+++GGG AG AA+ +A+LG T
Sbjct: 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNT 31
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 28/116 (24%)
Query: 78 FDVIVVGGGHAGCEAAL-------------ASARLGAKTLLLTLNIDKIAWQPCNPAVGG 124
FDV+V+GGG +G AA A R+G +T T+ + + W A G
Sbjct: 22 FDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRT--YTVRNEHVKWVDVGGAYVG 79
Query: 125 PAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTSRG---------PAVWALRAQTD 171
P +++++ LG E KV + +R++ +G P VW A D
Sbjct: 80 PTQNRILRLSKELGIETYKVN----VNERLVQYVKGKTYPFRGAFPPVWNPLAYLD 131
>pdb|3QLJ|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|E Chain E, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|F Chain F, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
Length = 322
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 74 IDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHE 133
+D R ++ GG G ALA A GA+ ++ + + +PA GG A +V E
Sbjct: 25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVG----LDGSPASGGSAAQSVVDE 80
Query: 134 VDALGGEIGKVAD 146
+ A GGE VAD
Sbjct: 81 ITAAGGE--AVAD 91
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLL-----------TLNIDKIAWQPCNPAVGGPA 126
FDV+V+GGG +G AA G L+L T+ + + + A GP
Sbjct: 3 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPT 62
Query: 127 KSQLVHEVDALGGEIGKVADMCYLQKRVLNTSRG---------PAVWALRAQTD 171
+++++ LG E KV + +R++ +G P VW A D
Sbjct: 63 QNRILRLSKELGIETYKVN----VSERLVQYVKGKTYPFRAAFPPVWNPIAYLD 112
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLL-----------TLNIDKIAWQPCNPAVGGPA 126
FDV+V+GGG +G AA G L+L T+ + + + A GP
Sbjct: 3 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPT 62
Query: 127 KSQLVHEVDALGGEIGKVADMCYLQKRVLNTSRG---------PAVWALRAQTD 171
+++++ LG E KV + +R++ +G P VW A D
Sbjct: 63 QNRILRLSKELGIETYKVN----VSERLVQYVKGKTYPFRGAFPPVWNPIAYLD 112
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 24/114 (21%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLL-----------TLNIDKIAWQPCNPAVGGPA 126
FDV+V+GGG +G AA G L+L T+ + + + A GP
Sbjct: 14 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPT 73
Query: 127 KSQLVHEVDALGGEIGKVADMCYLQKRVLNTSRG---------PAVWALRAQTD 171
+++++ LG E KV + +R++ +G P VW A D
Sbjct: 74 QNRILRLSKELGIETYKVN----VSERLVQYVKGKTYPFRGAFPPVWNPIAYLD 123
>pdb|4D9O|A Chain A, Structure Of Ebolavirus Protein Vp24 From Reston
pdb|4D9O|B Chain B, Structure Of Ebolavirus Protein Vp24 From Reston
Length = 236
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 209 GVCTFFGMNFYAPSVVLTTGTF----------MSGKIWVGRTSMPAGRAGESASHGLTEN 258
+ T N +AP+ +T F + IW R + AG + H L E
Sbjct: 60 ALLTRLKTNDFAPAWAMTRNLFPHLFQNPNSVIQSPIWALRVILAAGLQDQLLDHSLVEP 119
Query: 259 LQ-RLGFETDRLKTGTPSRVDLRT 281
L LG +D L T T + +LRT
Sbjct: 120 LTGALGLISDWLLTTTSTHFNLRT 143
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLL 106
D +DVIV+GGG+ G A G KTLLL
Sbjct: 37 DGPWDVIVIGGGYCGLTATRDLTVAGFKTLLL 68
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLL 106
D +DVIV+GGG+ G A G KTLLL
Sbjct: 37 DGPWDVIVIGGGYCGLTATRDLTVAGFKTLLL 68
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLL 106
D +DVIV+GGG+ G A G KTLLL
Sbjct: 37 DGPWDVIVIGGGYCGLTATRDLTVAGFKTLLL 68
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGG 124
FD++V+G G G EAA +A L K + + +++ + P A+GG
Sbjct: 4 FDLVVIGAGSGGLEAAWNAATLYKKRVAV-IDVQMVHGPPFFSALGG 49
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGG 124
FD++V+G G G EAA +A L K + + +++ + P A+GG
Sbjct: 5 FDLVVIGAGSGGLEAAWNAATLYKKRVAV-IDVQMVHGPPFFSALGG 50
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGG 124
FD++V+G G G EAA +A L K + + +++ + P A+GG
Sbjct: 6 FDLVVIGAGSGGLEAAWNAATLYKKRVAV-IDVQMVHGPPFFSALGG 51
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGG 124
FD++V+G G G EAA +A L K + + +++ + P A+GG
Sbjct: 5 FDLVVIGAGSGGLEAAWNAATLYKKRVAV-IDVQMVHGPPFFSALGG 50
>pdb|3FBS|A Chain A, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
pdb|3FBS|B Chain B, The Crystal Structure Of The Oxidoreductase From
Agrobacterium Tumefaciens
Length = 297
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 77 RFDVIVVGGGHAGCEAALASARLGAKTLLL 106
+FDVI++GG +AG AAL R LL+
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARKNILLV 31
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLL 106
+D +V+GGG G E+A +A LGA+ ++
Sbjct: 4 YDYLVIGGGSGGLESAWRAAELGARAAVV 32
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLL 106
+D +V+GGG G E+A +A LGA+ ++
Sbjct: 21 YDYLVIGGGSGGLESAWRAAELGARAAVV 49
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLL 106
+D IVVGGG +G +AA G K LLL
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLL 30
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 78 FDVIVVGGGHAGCEAALASARLGAKTLLL 106
+D IVVGGG +G +AA G K LLL
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLL 30
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVG--------GPAK 127
+ FD++V+GGG G A +A+LG K + D + P G G
Sbjct: 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAV----ADYVEPSPRGTKWGLGGTCVNVGCIP 60
Query: 128 SQLVHEVDALGGEI 141
+L+H+ LGG I
Sbjct: 61 KKLMHQAALLGGMI 74
>pdb|1PJT|A Chain A, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
pdb|1PJT|B Chain B, The Structure Of The Ser128ala Point-mutant Variant Of
Cysg, The Multifunctional
Methyltransferase/dehydrogenase/ferrochelatase For
Siroheme Synthesis
Length = 457
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 630 REKLSKVRPQTIGQASRVGGVSPADITALLIILEANRRKAQEQMRHQVLASVRADSNQQS 689
REKL + PQ +GQ +R G A + + RR ++ + LA A++++++
Sbjct: 140 REKLESLLPQHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKA 199
Query: 690 EGPLTETISS 699
TE + S
Sbjct: 200 VNATTERLFS 209
>pdb|1PJQ|A Chain A, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJQ|B Chain B, Structure And Function Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis
pdb|1PJS|A Chain A, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
pdb|1PJS|B Chain B, The Co-Crystal Structure Of Cysg, The Multifunctional
MethyltransferaseDEHYDROGENASEFERROCHELATASE FOR
Siroheme Synthesis, In Complex With It Nad Cofactor
Length = 457
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 630 REKLSKVRPQTIGQASRVGGVSPADITALLIILEANRRKAQEQMRHQVLASVRADSNQQS 689
REKL + PQ +GQ +R G A + + RR ++ + LA A++++++
Sbjct: 140 REKLESLLPQHLGQVARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKA 199
Query: 690 EGPLTETISS 699
TE + S
Sbjct: 200 VNATTERLFS 209
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVG--------GPAK 127
+ FD++V+GGG G A +A+LG K + D + P G G
Sbjct: 31 QSFDLLVIGGGSGGLACAKEAAQLGKKVAV----ADYVEPSPRGTKWGLGGTCVNVGCIP 86
Query: 128 SQLVHEVDALGGEI 141
+L+H+ LGG I
Sbjct: 87 KKLMHQAALLGGMI 100
>pdb|1VZV|A Chain A, Structure Of Varicella-Zoster Virus Protease
Length = 221
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 14/51 (27%)
Query: 469 EPYRMLTSRSEHRLL-LRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARV 518
EP+R+L+ S+ RLL L D A GL ++ WKV +DKLA+V
Sbjct: 154 EPFRVLSMESKARLLSLVKDYA-----------GL--NKVWKVSEDKLAKV 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,490,923
Number of Sequences: 62578
Number of extensions: 716521
Number of successful extensions: 2026
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1881
Number of HSP's gapped (non-prelim): 142
length of query: 699
length of database: 14,973,337
effective HSP length: 106
effective length of query: 593
effective length of database: 8,340,069
effective search space: 4945660917
effective search space used: 4945660917
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)