Query 048823
Match_columns 699
No_of_seqs 538 out of 4311
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 13:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0445 GidA Flavin-dependent 100.0 5E-174 1E-178 1387.3 39.0 589 76-666 3-618 (621)
2 PRK05192 tRNA uridine 5-carbox 100.0 2E-153 3E-158 1286.3 52.9 585 76-667 3-614 (618)
3 KOG2311 NAD/FAD-utilizing prot 100.0 1E-154 2E-159 1208.6 35.9 612 76-690 27-676 (679)
4 TIGR00136 gidA glucose-inhibit 100.0 2E-147 4E-152 1234.5 53.0 588 78-665 1-616 (617)
5 PF01134 GIDA: Glucose inhibit 100.0 3.3E-81 7.2E-86 670.7 20.6 364 79-444 1-392 (392)
6 TIGR00137 gid_trmFO tRNA:m(5)U 100.0 1.6E-63 3.5E-68 542.2 29.3 360 79-522 2-430 (433)
7 PRK05335 tRNA (uracil-5-)-meth 100.0 1.6E-61 3.5E-66 522.7 28.5 359 78-523 3-434 (436)
8 COG1206 Gid NAD(FAD)-utilizing 100.0 4.2E-49 9.2E-54 398.6 23.3 370 79-523 5-436 (439)
9 PF13932 GIDA_assoc_3: GidA as 100.0 2.7E-29 5.7E-34 206.5 5.1 72 589-660 1-72 (72)
10 PF03486 HI0933_like: HI0933-l 99.9 2.5E-23 5.4E-28 228.6 9.4 327 78-435 1-409 (409)
11 COG2081 Predicted flavoprotein 99.9 4.8E-22 1E-26 210.1 16.8 332 76-440 2-407 (408)
12 TIGR00275 flavoprotein, HI0933 99.7 4.2E-17 9.2E-22 180.4 13.8 318 81-433 1-399 (400)
13 PRK06452 sdhA succinate dehydr 99.7 2.1E-14 4.5E-19 165.6 26.3 168 76-250 4-214 (566)
14 PRK09078 sdhA succinate dehydr 99.6 1.2E-13 2.6E-18 160.2 28.4 154 76-232 11-213 (598)
15 PRK05945 sdhA succinate dehydr 99.6 5.5E-14 1.2E-18 162.6 23.9 74 172-250 134-213 (575)
16 PRK09231 fumarate reductase fl 99.6 1.2E-13 2.6E-18 159.7 26.6 168 77-250 4-212 (582)
17 PTZ00139 Succinate dehydrogena 99.6 2.5E-13 5.5E-18 157.9 29.3 169 76-250 28-245 (617)
18 PRK07395 L-aspartate oxidase; 99.6 1.5E-14 3.2E-19 166.1 17.7 170 75-250 7-213 (553)
19 PRK06069 sdhA succinate dehydr 99.6 1.7E-13 3.7E-18 158.6 26.4 154 76-232 4-201 (577)
20 PLN02815 L-aspartate oxidase 99.6 6.6E-14 1.4E-18 161.5 20.8 171 75-252 27-240 (594)
21 PLN00128 Succinate dehydrogena 99.6 2.9E-13 6.4E-18 157.4 25.7 171 76-252 49-268 (635)
22 PRK07804 L-aspartate oxidase; 99.6 8E-14 1.7E-18 160.0 20.3 171 74-250 13-226 (541)
23 PRK08641 sdhA succinate dehydr 99.6 3E-13 6.5E-18 156.6 24.8 171 77-252 3-218 (589)
24 PRK06263 sdhA succinate dehydr 99.6 4E-13 8.6E-18 154.6 25.2 153 76-232 6-198 (543)
25 TIGR01176 fum_red_Fp fumarate 99.6 1.5E-13 3.3E-18 158.6 21.7 168 77-250 3-211 (580)
26 PRK07803 sdhA succinate dehydr 99.6 5.6E-13 1.2E-17 155.4 26.5 154 76-232 7-214 (626)
27 COG2509 Uncharacterized FAD-de 99.6 2.2E-13 4.7E-18 146.1 20.0 242 173-440 173-483 (486)
28 TIGR00551 nadB L-aspartate oxi 99.5 1.6E-13 3.5E-18 155.9 20.0 152 77-232 2-190 (488)
29 PRK06854 adenylylsulfate reduc 99.5 5.5E-13 1.2E-17 154.9 24.8 156 76-232 10-196 (608)
30 PRK08205 sdhA succinate dehydr 99.5 2.8E-13 6.1E-18 156.9 22.2 76 171-250 138-222 (583)
31 PRK08958 sdhA succinate dehydr 99.5 2.2E-13 4.7E-18 157.7 21.0 170 76-251 6-223 (588)
32 TIGR01812 sdhA_frdA_Gneg succi 99.5 3E-13 6.5E-18 156.5 22.2 150 79-232 1-192 (566)
33 COG1053 SdhA Succinate dehydro 99.5 2.5E-13 5.5E-18 154.8 20.8 172 75-251 4-219 (562)
34 PRK06481 fumarate reductase fl 99.5 7.7E-13 1.7E-17 150.9 24.4 157 73-233 57-253 (506)
35 PRK06175 L-aspartate oxidase; 99.5 3E-13 6.5E-18 151.2 19.8 150 76-232 3-190 (433)
36 PRK08401 L-aspartate oxidase; 99.5 6E-13 1.3E-17 150.3 21.7 150 78-233 2-177 (466)
37 PRK08626 fumarate reductase fl 99.5 3.6E-13 7.7E-18 157.5 20.3 75 173-252 158-238 (657)
38 PRK09077 L-aspartate oxidase; 99.5 5.9E-13 1.3E-17 152.8 21.5 170 75-250 6-223 (536)
39 PRK08275 putative oxidoreducta 99.5 1.3E-11 2.7E-16 142.5 31.0 155 76-232 8-201 (554)
40 COG0029 NadB Aspartate oxidase 99.5 1.6E-12 3.4E-17 141.2 21.4 168 79-255 9-217 (518)
41 PRK07057 sdhA succinate dehydr 99.5 1.6E-12 3.4E-17 150.8 23.0 75 172-250 147-227 (591)
42 PRK07512 L-aspartate oxidase; 99.5 3.5E-13 7.5E-18 153.8 17.3 166 76-250 8-213 (513)
43 PRK07573 sdhA succinate dehydr 99.5 2.3E-13 5E-18 158.7 15.7 69 177-250 174-248 (640)
44 TIGR01811 sdhA_Bsu succinate d 99.5 1.6E-12 3.4E-17 150.9 21.9 76 172-250 128-212 (603)
45 PRK08071 L-aspartate oxidase; 99.5 7.6E-13 1.7E-17 150.9 18.5 148 77-232 3-191 (510)
46 PRK13800 putative oxidoreducta 99.5 4.4E-12 9.4E-17 153.7 24.5 154 75-232 11-206 (897)
47 PRK07121 hypothetical protein; 99.5 2.3E-12 5E-17 146.6 20.8 62 171-233 175-241 (492)
48 COG1249 Lpd Pyruvate/2-oxoglut 99.4 4.9E-13 1.1E-17 148.6 12.5 141 76-230 3-146 (454)
49 COG0492 TrxB Thioredoxin reduc 99.4 6.1E-13 1.3E-17 141.0 11.4 112 76-230 2-114 (305)
50 TIGR01424 gluta_reduc_2 glutat 99.4 1.7E-12 3.7E-17 145.9 13.9 138 77-230 2-141 (446)
51 TIGR02061 aprA adenosine phosp 99.4 1.6E-11 3.5E-16 142.0 21.5 149 79-231 1-191 (614)
52 TIGR03862 flavo_PP4765 unchara 99.4 3E-12 6.4E-17 139.1 13.2 59 375-440 311-375 (376)
53 PRK06327 dihydrolipoamide dehy 99.4 6.4E-12 1.4E-16 142.4 16.6 33 76-108 3-35 (475)
54 PRK06116 glutathione reductase 99.4 2E-12 4.2E-17 145.6 12.1 138 76-230 3-142 (450)
55 PLN02507 glutathione reductase 99.4 4E-12 8.7E-17 144.6 13.4 142 75-230 23-178 (499)
56 PRK06467 dihydrolipoamide dehy 99.4 4.7E-12 1E-16 143.3 13.5 130 75-230 2-147 (471)
57 PRK14694 putative mercuric red 99.4 3.2E-12 6.8E-17 144.6 11.8 134 75-230 4-151 (468)
58 TIGR01421 gluta_reduc_1 glutat 99.3 5.3E-12 1.1E-16 142.1 12.7 46 76-121 1-48 (450)
59 PRK06416 dihydrolipoamide dehy 99.3 1.3E-11 2.8E-16 139.5 15.2 141 76-231 3-146 (462)
60 PRK06370 mercuric reductase; V 99.3 1.6E-11 3.6E-16 138.6 15.9 47 75-121 3-51 (463)
61 PRK07818 dihydrolipoamide dehy 99.3 2.4E-11 5.3E-16 137.4 17.0 45 76-120 3-49 (466)
62 PRK12844 3-ketosteroid-delta-1 99.3 4.6E-11 1E-15 137.7 19.3 58 174-233 209-271 (557)
63 TIGR01423 trypano_reduc trypan 99.3 1.1E-11 2.4E-16 140.3 12.8 141 76-230 2-162 (486)
64 PRK04176 ribulose-1,5-biphosph 99.3 3.2E-11 6.8E-16 125.5 15.0 131 76-230 24-172 (257)
65 TIGR03329 Phn_aa_oxid putative 99.3 4E-10 8.6E-15 127.3 25.2 60 168-232 178-238 (460)
66 TIGR03143 AhpF_homolog putativ 99.3 7.5E-11 1.6E-15 136.0 19.1 112 76-231 3-114 (555)
67 TIGR02032 GG-red-SF geranylger 99.3 2.3E-10 5E-15 120.5 21.0 142 78-231 1-148 (295)
68 TIGR01292 TRX_reduct thioredox 99.3 7.5E-11 1.6E-15 124.7 17.3 111 78-230 1-111 (300)
69 PF01946 Thi4: Thi4 family; PD 99.3 4.7E-11 1E-15 117.8 13.9 131 76-230 16-164 (230)
70 PRK06115 dihydrolipoamide dehy 99.3 2.6E-11 5.6E-16 137.1 13.7 140 77-231 3-148 (466)
71 PTZ00058 glutathione reductase 99.3 4.7E-11 1E-15 137.0 15.8 57 76-132 47-105 (561)
72 TIGR01373 soxB sarcosine oxida 99.3 1.1E-09 2.3E-14 121.8 25.8 61 169-231 179-240 (407)
73 PRK05249 soluble pyridine nucl 99.3 3E-11 6.4E-16 136.5 13.3 132 76-230 4-148 (461)
74 COG0644 FixC Dehydrogenases (f 99.3 2.8E-11 6.1E-16 134.0 12.7 145 76-230 2-151 (396)
75 PRK13748 putative mercuric red 99.3 2.2E-11 4.8E-16 141.0 11.5 131 76-230 97-243 (561)
76 COG1635 THI4 Ribulose 1,5-bisp 99.2 9.7E-11 2.1E-15 114.8 13.5 134 77-230 30-177 (262)
77 TIGR02053 MerA mercuric reduct 99.2 9.6E-11 2.1E-15 132.4 14.1 44 78-121 1-46 (463)
78 PRK07845 flavoprotein disulfid 99.2 1.1E-10 2.5E-15 131.9 14.4 143 78-231 2-151 (466)
79 TIGR00292 thiazole biosynthesi 99.2 2E-10 4.3E-15 119.2 14.9 130 76-230 20-169 (254)
80 PF01266 DAO: FAD dependent ox 99.2 8E-11 1.7E-15 127.0 12.2 59 169-230 143-202 (358)
81 COG0665 DadA Glycine/D-amino a 99.2 9.7E-10 2.1E-14 120.8 20.9 62 167-231 150-212 (387)
82 PRK06292 dihydrolipoamide dehy 99.2 2.7E-10 5.8E-15 128.7 16.7 34 76-109 2-35 (460)
83 TIGR01438 TGR thioredoxin and 99.2 1.9E-10 4.1E-15 130.5 15.3 139 77-230 2-154 (484)
84 KOG2853 Possible oxidoreductas 99.2 1.1E-09 2.5E-14 113.0 19.0 155 74-231 83-320 (509)
85 PRK10157 putative oxidoreducta 99.2 1.7E-10 3.7E-15 129.0 13.6 146 77-230 5-163 (428)
86 KOG1298 Squalene monooxygenase 99.2 2.5E-11 5.5E-16 127.1 6.3 152 75-232 43-209 (509)
87 COG0654 UbiH 2-polyprenyl-6-me 99.2 1.2E-10 2.5E-15 128.7 11.7 150 77-236 2-167 (387)
88 PLN02661 Putative thiazole syn 99.2 7.3E-10 1.6E-14 118.5 17.0 131 76-230 91-243 (357)
89 PRK00711 D-amino acid dehydrog 99.2 7.1E-09 1.5E-13 115.4 25.5 60 169-231 197-257 (416)
90 PRK08274 tricarballylate dehyd 99.2 4.9E-10 1.1E-14 126.7 16.3 157 75-234 2-195 (466)
91 PRK14727 putative mercuric red 99.2 2.4E-10 5.2E-15 129.7 13.5 130 76-230 15-161 (479)
92 PRK11101 glpA sn-glycerol-3-ph 99.2 3.9E-10 8.5E-15 129.8 15.3 151 77-231 6-211 (546)
93 PRK06912 acoL dihydrolipoamide 99.1 2.4E-10 5.3E-15 129.0 12.7 137 79-231 2-144 (458)
94 PRK10015 oxidoreductase; Provi 99.1 2.3E-10 5.1E-15 127.9 11.9 148 76-231 4-164 (429)
95 PRK07608 ubiquinone biosynthes 99.1 4.5E-10 9.9E-15 123.7 13.7 152 76-231 4-167 (388)
96 PLN02697 lycopene epsilon cycl 99.1 5E-10 1.1E-14 127.3 14.2 138 76-231 107-248 (529)
97 PLN02546 glutathione reductase 99.1 3E-10 6.5E-15 130.4 12.5 139 75-230 77-227 (558)
98 PF12831 FAD_oxidored: FAD dep 99.1 2.4E-11 5.3E-16 135.8 3.4 142 79-229 1-148 (428)
99 PRK07045 putative monooxygenas 99.1 7.9E-10 1.7E-14 122.0 15.3 150 76-232 4-166 (388)
100 PRK07494 2-octaprenyl-6-methox 99.1 4.3E-10 9.4E-15 124.0 13.1 148 75-231 5-167 (388)
101 PRK08013 oxidoreductase; Provi 99.1 5.5E-10 1.2E-14 123.9 13.8 152 77-233 3-170 (400)
102 PLN02985 squalene monooxygenas 99.1 6.5E-10 1.4E-14 126.8 14.3 154 75-235 41-212 (514)
103 TIGR02023 BchP-ChlP geranylger 99.1 5.9E-10 1.3E-14 123.1 13.6 141 78-231 1-155 (388)
104 PF00890 FAD_binding_2: FAD bi 99.1 3.3E-10 7.3E-15 126.1 11.6 60 171-232 139-204 (417)
105 COG0579 Predicted dehydrogenas 99.1 1.8E-09 3.8E-14 118.6 16.2 152 76-230 2-210 (429)
106 PLN02463 lycopene beta cyclase 99.1 1.1E-09 2.5E-14 122.5 14.3 142 76-231 27-169 (447)
107 PRK08850 2-octaprenyl-6-methox 99.1 1E-09 2.2E-14 122.0 13.8 150 77-232 4-169 (405)
108 PRK08020 ubiF 2-octaprenyl-3-m 99.1 9.5E-10 2E-14 121.4 13.5 151 76-231 4-169 (391)
109 PLN00093 geranylgeranyl diphos 99.1 1.3E-09 2.7E-14 122.6 14.5 144 76-231 38-199 (450)
110 TIGR01790 carotene-cycl lycope 99.1 8.6E-10 1.9E-14 121.6 13.1 138 79-231 1-141 (388)
111 PRK08849 2-octaprenyl-3-methyl 99.1 8.5E-10 1.8E-14 121.7 12.9 154 77-234 3-170 (384)
112 PRK05714 2-octaprenyl-3-methyl 99.1 9.5E-10 2.1E-14 122.1 13.4 153 77-234 2-171 (405)
113 TIGR01813 flavo_cyto_c flavocy 99.1 1.5E-09 3.2E-14 121.9 14.8 152 79-233 1-194 (439)
114 PRK09126 hypothetical protein; 99.1 1E-09 2.2E-14 121.2 13.1 152 77-234 3-170 (392)
115 PRK07364 2-octaprenyl-6-methox 99.1 1.1E-09 2.3E-14 121.9 13.5 151 74-232 15-182 (415)
116 PRK06185 hypothetical protein; 99.1 1.1E-09 2.4E-14 121.6 13.3 149 76-231 5-169 (407)
117 PRK05732 2-octaprenyl-6-methox 99.1 1.4E-09 3.1E-14 119.9 13.7 151 76-231 2-169 (395)
118 PRK06617 2-octaprenyl-6-methox 99.1 9.5E-10 2.1E-14 120.9 12.1 149 78-234 2-163 (374)
119 PRK06847 hypothetical protein; 99.0 2.3E-09 5E-14 117.6 14.8 150 76-234 3-166 (375)
120 PRK12834 putative FAD-binding 99.0 1.7E-09 3.7E-14 124.8 14.2 35 76-110 3-37 (549)
121 PRK08773 2-octaprenyl-3-methyl 99.0 1.8E-09 3.9E-14 119.3 13.8 151 76-231 5-169 (392)
122 KOG0404 Thioredoxin reductase 99.0 1.4E-09 3E-14 106.5 11.0 122 77-237 8-129 (322)
123 PRK12266 glpD glycerol-3-phosp 99.0 2.8E-09 6E-14 121.8 15.4 62 167-231 149-216 (508)
124 COG3573 Predicted oxidoreducta 99.0 2.8E-09 6.1E-14 109.9 13.7 34 76-109 4-37 (552)
125 PRK12835 3-ketosteroid-delta-1 99.0 2E-09 4.4E-14 124.7 14.3 58 176-234 216-278 (584)
126 TIGR01984 UbiH 2-polyprenyl-6- 99.0 1.7E-09 3.8E-14 118.8 13.0 148 79-231 1-162 (382)
127 TIGR01988 Ubi-OHases Ubiquinon 99.0 1.6E-09 3.4E-14 119.0 12.6 148 79-232 1-164 (385)
128 PRK05976 dihydrolipoamide dehy 99.0 1.1E-09 2.4E-14 124.2 11.5 145 76-231 3-154 (472)
129 TIGR01989 COQ6 Ubiquinone bios 99.0 1.9E-09 4.1E-14 121.0 13.2 155 78-235 1-187 (437)
130 PLN02464 glycerol-3-phosphate 99.0 1.9E-09 4.1E-14 125.8 13.6 64 167-231 226-296 (627)
131 PTZ00383 malate:quinone oxidor 99.0 5.4E-09 1.2E-13 118.3 16.7 62 168-231 206-273 (497)
132 PRK11259 solA N-methyltryptoph 99.0 3.9E-09 8.5E-14 115.7 15.1 59 169-231 145-204 (376)
133 PRK06834 hypothetical protein; 99.0 2.9E-09 6.3E-14 121.0 14.2 148 77-232 3-157 (488)
134 PF01494 FAD_binding_3: FAD bi 99.0 7.6E-10 1.6E-14 119.3 8.9 147 77-231 1-172 (356)
135 PRK12845 3-ketosteroid-delta-1 99.0 4E-09 8.6E-14 121.7 15.3 59 174-234 218-281 (564)
136 PTZ00306 NADH-dependent fumara 99.0 4E-09 8.6E-14 131.1 16.2 158 75-234 407-623 (1167)
137 PRK11728 hydroxyglutarate oxid 99.0 4.5E-09 9.8E-14 116.3 14.7 60 168-231 144-204 (393)
138 TIGR01377 soxA_mon sarcosine o 99.0 5.6E-09 1.2E-13 114.6 15.3 60 168-231 140-200 (380)
139 PRK06183 mhpA 3-(3-hydroxyphen 99.0 2.7E-09 5.9E-14 122.9 12.7 151 76-234 9-177 (538)
140 PRK12837 3-ketosteroid-delta-1 99.0 5E-09 1.1E-13 119.9 14.6 59 174-233 174-237 (513)
141 PF13738 Pyr_redox_3: Pyridine 99.0 9.2E-10 2E-14 109.8 7.5 131 81-231 1-138 (203)
142 TIGR02730 carot_isom carotene 99.0 3.1E-08 6.8E-13 112.9 20.9 57 173-231 229-286 (493)
143 PRK11445 putative oxidoreducta 99.0 7E-09 1.5E-13 113.1 14.7 150 77-232 1-158 (351)
144 PRK06184 hypothetical protein; 99.0 4.2E-09 9.2E-14 120.3 13.4 146 77-231 3-168 (502)
145 TIGR03364 HpnW_proposed FAD de 99.0 5.4E-09 1.2E-13 114.3 13.5 57 168-231 140-197 (365)
146 PRK05675 sdhA succinate dehydr 99.0 2.3E-08 5E-13 115.7 19.3 78 171-252 124-207 (570)
147 PRK08163 salicylate hydroxylas 99.0 5.7E-09 1.2E-13 115.3 13.6 150 77-234 4-169 (396)
148 TIGR02028 ChlP geranylgeranyl 99.0 6.6E-09 1.4E-13 115.2 14.1 143 78-231 1-160 (398)
149 PRK07333 2-octaprenyl-6-methox 99.0 5.6E-09 1.2E-13 115.7 13.3 148 78-231 2-167 (403)
150 TIGR01372 soxA sarcosine oxida 98.9 5.5E-08 1.2E-12 119.3 22.6 110 76-231 162-286 (985)
151 PRK13369 glycerol-3-phosphate 98.9 4.9E-09 1.1E-13 119.7 12.6 61 168-231 150-215 (502)
152 PTZ00367 squalene epoxidase; P 98.9 5.1E-09 1.1E-13 120.4 12.7 155 76-237 32-225 (567)
153 PRK12839 hypothetical protein; 98.9 9.8E-09 2.1E-13 118.7 15.1 62 171-233 212-278 (572)
154 COG0578 GlpA Glycerol-3-phosph 98.9 7.3E-09 1.6E-13 116.0 13.2 66 163-231 154-225 (532)
155 KOG4254 Phytoene desaturase [C 98.9 3.5E-08 7.6E-13 105.8 17.0 55 174-230 265-320 (561)
156 PF04820 Trp_halogenase: Trypt 98.9 5.4E-09 1.2E-13 117.6 11.6 62 168-230 149-210 (454)
157 KOG2820 FAD-dependent oxidored 98.9 1.3E-08 2.9E-13 105.6 13.4 62 169-231 149-212 (399)
158 PRK08244 hypothetical protein; 98.9 8.5E-09 1.8E-13 117.6 13.1 146 77-231 2-159 (493)
159 PRK07236 hypothetical protein; 98.9 1E-08 2.2E-13 113.1 13.2 149 77-236 6-159 (386)
160 PRK12843 putative FAD-binding 98.9 2E-08 4.4E-13 116.5 16.1 60 172-233 220-284 (578)
161 PRK12409 D-amino acid dehydrog 98.9 1.5E-08 3.3E-13 112.6 14.1 60 169-231 193-258 (410)
162 PF05834 Lycopene_cycl: Lycope 98.9 1E-08 2.2E-13 112.8 11.7 136 79-230 1-141 (374)
163 PRK06134 putative FAD-binding 98.9 3.8E-08 8.3E-13 114.3 16.8 61 171-233 215-280 (581)
164 PRK07190 hypothetical protein; 98.9 1.1E-08 2.3E-13 116.3 12.0 145 77-231 5-165 (487)
165 KOG2415 Electron transfer flav 98.9 1E-08 2.2E-13 108.6 10.7 149 75-230 74-255 (621)
166 PRK08132 FAD-dependent oxidore 98.9 1.4E-08 3.1E-13 117.2 12.9 150 76-232 22-186 (547)
167 PRK06126 hypothetical protein; 98.9 1.6E-08 3.5E-13 116.8 13.3 150 76-232 6-189 (545)
168 PRK01747 mnmC bifunctional tRN 98.9 2.8E-08 6.1E-13 117.3 15.3 60 168-231 403-463 (662)
169 PRK08243 4-hydroxybenzoate 3-m 98.8 2.4E-08 5.1E-13 110.5 13.2 150 77-236 2-168 (392)
170 PRK07588 hypothetical protein; 98.8 2.6E-08 5.6E-13 110.1 13.2 143 79-234 2-161 (391)
171 PRK08010 pyridine nucleotide-d 98.8 9.6E-09 2.1E-13 115.4 9.9 123 77-230 3-130 (441)
172 PRK12842 putative succinate de 98.8 5.5E-08 1.2E-12 112.9 16.0 58 174-233 215-277 (574)
173 TIGR02734 crtI_fam phytoene de 98.8 5.3E-08 1.1E-12 111.3 15.7 56 173-230 219-275 (502)
174 PRK07251 pyridine nucleotide-d 98.8 1.6E-08 3.4E-13 113.6 11.2 33 77-109 3-35 (438)
175 PRK07843 3-ketosteroid-delta-1 98.8 3.1E-08 6.8E-13 114.4 13.6 59 174-234 209-272 (557)
176 COG1148 HdrA Heterodisulfide r 98.8 9.1E-09 2E-13 111.0 8.1 65 367-441 480-545 (622)
177 TIGR01350 lipoamide_DH dihydro 98.8 1.6E-08 3.5E-13 114.2 10.6 139 77-230 1-142 (461)
178 PRK06753 hypothetical protein; 98.8 3E-08 6.5E-13 108.7 12.0 142 79-234 2-155 (373)
179 PRK12831 putative oxidoreducta 98.8 6.1E-08 1.3E-12 109.5 14.7 45 398-443 417-463 (464)
180 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 4.3E-08 9.4E-13 108.4 13.1 152 77-235 2-167 (390)
181 PTZ00153 lipoamide dehydrogena 98.8 3.7E-08 8E-13 114.9 13.0 61 76-136 115-179 (659)
182 PRK05868 hypothetical protein; 98.8 3.8E-08 8.2E-13 108.2 12.3 148 78-235 2-164 (372)
183 PRK06475 salicylate hydroxylas 98.8 1.9E-08 4E-13 111.7 9.9 151 79-237 4-173 (400)
184 PRK15317 alkyl hydroperoxide r 98.8 5.3E-08 1.1E-12 111.7 13.8 111 76-230 210-321 (517)
185 KOG2844 Dimethylglycine dehydr 98.8 2.6E-08 5.6E-13 111.1 10.4 61 168-231 182-243 (856)
186 KOG1335 Dihydrolipoamide dehyd 98.8 3.1E-08 6.7E-13 104.2 10.3 130 76-229 38-183 (506)
187 PRK07538 hypothetical protein; 98.8 4.6E-08 9.9E-13 109.0 12.5 150 79-236 2-170 (413)
188 TIGR02485 CobZ_N-term precorri 98.8 5.7E-08 1.2E-12 108.9 13.3 62 172-234 122-186 (432)
189 PTZ00318 NADH dehydrogenase-li 98.8 1.4E-07 3.1E-12 105.4 16.3 107 77-230 10-124 (424)
190 TIGR01320 mal_quin_oxido malat 98.8 1.1E-07 2.4E-12 107.7 15.4 61 169-231 174-240 (483)
191 PRK05257 malate:quinone oxidor 98.8 1E-07 2.3E-12 108.2 15.1 62 169-231 179-246 (494)
192 TIGR03140 AhpF alkyl hydropero 98.8 6.6E-08 1.4E-12 110.8 13.6 111 76-230 211-322 (515)
193 TIGR01816 sdhA_forward succina 98.8 2.1E-07 4.6E-12 107.7 17.8 74 172-250 118-197 (565)
194 PRK08294 phenol 2-monooxygenas 98.7 7.7E-08 1.7E-12 112.7 14.1 154 74-234 29-213 (634)
195 PRK13339 malate:quinone oxidor 98.7 1.8E-07 3.8E-12 105.9 15.9 63 168-231 179-247 (497)
196 PTZ00052 thioredoxin reductase 98.7 4.4E-08 9.6E-13 111.7 11.2 33 76-108 4-36 (499)
197 PRK10262 thioredoxin reductase 98.7 1.3E-07 2.9E-12 101.6 13.8 113 76-231 5-117 (321)
198 PRK06996 hypothetical protein; 98.7 7.5E-08 1.6E-12 106.7 12.1 149 75-230 9-173 (398)
199 PRK09853 putative selenate red 98.7 1.2E-07 2.6E-12 113.9 14.4 43 398-441 799-842 (1019)
200 KOG2404 Fumarate reductase, fl 98.7 1.8E-07 3.9E-12 96.5 12.8 151 79-231 11-206 (477)
201 PRK05329 anaerobic glycerol-3- 98.7 1.6E-06 3.6E-11 96.3 21.4 57 174-232 260-319 (422)
202 PLN02172 flavin-containing mon 98.7 2.3E-07 5E-12 104.5 14.8 146 77-231 10-173 (461)
203 PRK12775 putative trifunctiona 98.7 2.2E-07 4.7E-12 113.8 15.5 53 399-452 713-766 (1006)
204 PLN02927 antheraxanthin epoxid 98.7 1.9E-07 4E-12 108.5 13.7 154 75-235 79-252 (668)
205 TIGR03315 Se_ygfK putative sel 98.7 1.3E-07 2.8E-12 114.0 12.3 34 76-109 536-569 (1012)
206 PRK12778 putative bifunctional 98.6 1.6E-07 3.5E-12 112.4 13.0 45 398-443 707-752 (752)
207 KOG0405 Pyridine nucleotide-di 98.6 1.3E-07 2.9E-12 98.4 10.4 142 75-230 18-164 (478)
208 COG2072 TrkA Predicted flavopr 98.6 2.8E-07 6.1E-12 103.4 13.9 137 75-234 6-147 (443)
209 PRK07846 mycothione reductase; 98.6 1.3E-07 2.9E-12 106.5 11.3 131 77-230 1-139 (451)
210 PRK12779 putative bifunctional 98.6 3.1E-07 6.7E-12 111.5 15.1 34 76-109 305-338 (944)
211 TIGR03219 salicylate_mono sali 98.6 2.5E-07 5.3E-12 103.2 12.2 145 79-234 2-162 (414)
212 PLN02612 phytoene desaturase 98.6 9.7E-06 2.1E-10 94.0 25.1 56 174-230 309-365 (567)
213 TIGR03452 mycothione_red mycot 98.6 1.6E-07 3.5E-12 105.9 10.0 137 77-230 2-142 (452)
214 PF00732 GMC_oxred_N: GMC oxid 98.5 1.3E-07 2.7E-12 100.4 7.2 60 176-236 196-263 (296)
215 PF13454 NAD_binding_9: FAD-NA 98.5 1.2E-06 2.5E-11 84.3 13.0 138 81-229 1-155 (156)
216 PRK11749 dihydropyrimidine deh 98.5 2.1E-07 4.5E-12 105.2 8.6 43 401-444 412-455 (457)
217 COG1252 Ndh NADH dehydrogenase 98.5 3.7E-06 8.1E-11 92.0 17.8 105 78-230 4-110 (405)
218 KOG0042 Glycerol-3-phosphate d 98.5 3.4E-08 7.3E-13 108.0 1.8 66 167-233 218-289 (680)
219 TIGR01789 lycopene_cycl lycope 98.5 7.6E-07 1.7E-11 97.8 12.3 135 79-231 1-138 (370)
220 KOG2614 Kynurenine 3-monooxyge 98.5 2E-07 4.2E-12 100.0 7.3 32 78-109 3-34 (420)
221 TIGR02732 zeta_caro_desat caro 98.5 9.2E-06 2E-10 92.2 21.1 57 175-232 221-285 (474)
222 PLN02487 zeta-carotene desatur 98.5 1.5E-05 3.3E-10 91.8 22.5 57 174-231 296-360 (569)
223 PRK12814 putative NADPH-depend 98.4 1.5E-06 3.2E-11 102.4 12.9 44 401-445 461-505 (652)
224 COG3634 AhpF Alkyl hydroperoxi 98.4 4.2E-07 9.2E-12 94.6 6.6 113 76-230 210-324 (520)
225 PRK12769 putative oxidoreducta 98.4 1.4E-06 3E-11 102.8 11.9 33 77-109 327-359 (654)
226 COG1233 Phytoene dehydrogenase 98.4 1.7E-06 3.6E-11 98.6 12.1 55 173-229 224-279 (487)
227 TIGR01316 gltA glutamate synth 98.4 4.8E-06 1E-10 93.9 15.7 31 79-109 274-304 (449)
228 TIGR03140 AhpF alkyl hydropero 98.3 3E-06 6.5E-11 97.2 12.6 91 78-230 353-449 (515)
229 PTZ00363 rab-GDP dissociation 98.3 5.9E-06 1.3E-10 92.5 14.5 57 174-230 233-289 (443)
230 PRK13977 myosin-cross-reactive 98.3 1.4E-05 2.9E-10 91.0 17.3 61 173-234 226-296 (576)
231 KOG1399 Flavin-containing mono 98.3 3.2E-06 6.9E-11 94.2 12.1 130 78-231 7-153 (448)
232 KOG2852 Possible oxidoreductas 98.3 1.1E-06 2.4E-11 89.6 7.6 64 168-232 142-209 (380)
233 COG3380 Predicted NAD/FAD-depe 98.3 1.7E-06 3.7E-11 87.8 8.5 139 79-230 3-159 (331)
234 PF07992 Pyr_redox_2: Pyridine 98.3 8.7E-07 1.9E-11 88.0 6.1 30 79-108 1-30 (201)
235 PF00743 FMO-like: Flavin-bind 98.3 3.4E-06 7.4E-11 96.6 11.3 143 79-234 3-153 (531)
236 PF00070 Pyr_redox: Pyridine n 98.3 9.8E-06 2.1E-10 68.6 10.9 78 80-215 2-80 (80)
237 KOG2960 Protein involved in th 98.2 1.4E-06 3E-11 85.1 5.8 135 77-229 76-232 (328)
238 TIGR01810 betA choline dehydro 98.2 6E-06 1.3E-10 95.2 12.1 53 183-236 203-260 (532)
239 PRK02106 choline dehydrogenase 98.2 1.1E-05 2.4E-10 93.6 14.1 53 184-237 211-268 (560)
240 PRK07846 mycothione reductase; 98.2 3.4E-05 7.5E-10 87.0 17.7 94 78-230 167-261 (451)
241 TIGR03378 glycerol3P_GlpB glyc 98.2 1.2E-05 2.6E-10 88.7 13.4 59 170-230 260-321 (419)
242 PRK15317 alkyl hydroperoxide r 98.2 1.3E-05 2.9E-10 92.0 14.0 91 78-230 352-448 (517)
243 TIGR02462 pyranose_ox pyranose 98.2 7.5E-06 1.6E-10 93.5 11.1 55 185-239 225-287 (544)
244 PRK13984 putative oxidoreducta 98.2 5.1E-06 1.1E-10 97.3 9.8 44 398-442 560-603 (604)
245 PRK09897 hypothetical protein; 98.2 2.3E-05 5.1E-10 89.5 14.6 32 78-109 2-35 (534)
246 TIGR03452 mycothione_red mycot 98.1 6.8E-05 1.5E-09 84.7 17.5 94 78-230 170-264 (452)
247 PRK12771 putative glutamate sy 98.1 4.9E-06 1.1E-10 96.6 8.3 44 401-445 404-448 (564)
248 PRK12810 gltD glutamate syntha 98.1 5.6E-05 1.2E-09 85.8 16.6 44 401-445 425-469 (471)
249 KOG4716 Thioredoxin reductase 98.1 2.7E-05 5.7E-10 81.2 12.3 141 76-230 18-172 (503)
250 PF06039 Mqo: Malate:quinone o 98.1 6.1E-05 1.3E-09 82.7 15.5 63 168-231 176-244 (488)
251 PF13434 K_oxygenase: L-lysine 98.1 7.4E-06 1.6E-10 88.9 8.4 144 77-229 2-157 (341)
252 PLN02785 Protein HOTHEAD 98.1 2.3E-05 5.1E-10 90.9 12.6 35 75-110 53-87 (587)
253 PRK07233 hypothetical protein; 98.1 3.3E-05 7.1E-10 86.2 12.9 54 174-230 199-253 (434)
254 COG3075 GlpB Anaerobic glycero 98.1 2.7E-05 5.8E-10 81.2 10.9 57 173-230 258-316 (421)
255 TIGR03169 Nterm_to_SelD pyridi 98.0 1.4E-05 3E-10 87.5 9.2 104 79-231 1-107 (364)
256 TIGR03197 MnmC_Cterm tRNA U-34 98.0 0.00023 4.9E-09 78.5 18.6 60 168-231 130-190 (381)
257 PRK09564 coenzyme A disulfide 98.0 2.4E-05 5.2E-10 88.0 10.9 31 79-109 2-34 (444)
258 TIGR03169 Nterm_to_SelD pyridi 98.0 0.00021 4.6E-09 78.1 18.0 46 400-445 264-315 (364)
259 PRK08255 salicylyl-CoA 5-hydro 98.0 8.6E-06 1.9E-10 97.7 7.5 133 79-233 2-143 (765)
260 TIGR02352 thiamin_ThiO glycine 98.0 0.0004 8.6E-09 74.7 19.4 61 168-231 132-193 (337)
261 KOG3851 Sulfide:quinone oxidor 98.0 5.2E-06 1.1E-10 85.9 3.4 35 75-109 37-73 (446)
262 COG4529 Uncharacterized protei 97.9 9.5E-05 2.1E-09 81.5 12.9 144 78-230 2-163 (474)
263 TIGR02731 phytoene_desat phyto 97.9 0.00013 2.8E-09 82.4 14.3 56 174-230 214-275 (453)
264 PRK12770 putative glutamate sy 97.9 0.00021 4.6E-09 77.9 15.1 42 400-442 309-351 (352)
265 COG1249 Lpd Pyruvate/2-oxoglut 97.9 0.00015 3.2E-09 81.4 13.8 94 79-230 175-271 (454)
266 PRK09754 phenylpropionate diox 97.9 8.6E-05 1.9E-09 82.4 12.0 95 78-230 145-240 (396)
267 PRK13512 coenzyme A disulfide 97.9 7.8E-05 1.7E-09 83.9 11.2 31 79-109 3-35 (438)
268 PRK04965 NADH:flavorubredoxin 97.9 0.00011 2.3E-09 81.1 12.0 96 78-230 142-238 (377)
269 PF13450 NAD_binding_8: NAD(P) 97.8 2E-05 4.3E-10 64.7 4.4 28 82-109 1-28 (68)
270 KOG1238 Glucose dehydrogenase/ 97.8 7.9E-05 1.7E-09 84.6 10.6 78 177-266 256-341 (623)
271 PRK09754 phenylpropionate diox 97.8 8.5E-05 1.8E-09 82.4 10.5 106 78-231 4-112 (396)
272 PRK05976 dihydrolipoamide dehy 97.8 0.00017 3.6E-09 82.0 13.0 97 78-230 181-280 (472)
273 TIGR01350 lipoamide_DH dihydro 97.8 0.00019 4.1E-09 81.2 12.3 95 78-230 171-268 (461)
274 PRK14989 nitrite reductase sub 97.7 0.00019 4.1E-09 86.8 12.7 98 79-231 147-245 (847)
275 KOG3855 Monooxygenase involved 97.7 0.00022 4.9E-09 76.6 11.4 178 75-257 34-245 (481)
276 COG2303 BetA Choline dehydroge 97.7 0.00021 4.6E-09 82.4 12.3 57 180-237 209-272 (542)
277 PRK06116 glutathione reductase 97.7 0.00027 5.9E-09 79.8 12.7 96 78-230 168-264 (450)
278 TIGR01421 gluta_reduc_1 glutat 97.7 0.00028 6E-09 79.7 12.7 95 79-230 168-264 (450)
279 TIGR02374 nitri_red_nirB nitri 97.7 0.0002 4.4E-09 86.2 12.1 95 79-230 142-237 (785)
280 TIGR01317 GOGAT_sm_gam glutama 97.7 0.0019 4E-08 73.7 19.2 44 401-445 439-483 (485)
281 TIGR01318 gltD_gamma_fam gluta 97.7 0.00059 1.3E-08 77.4 14.8 39 401-440 426-465 (467)
282 PRK06416 dihydrolipoamide dehy 97.7 0.00033 7.2E-09 79.3 12.5 94 79-230 174-271 (462)
283 PLN02852 ferredoxin-NADP+ redu 97.6 0.00016 3.4E-09 81.9 9.4 33 77-109 26-60 (491)
284 PRK05249 soluble pyridine nucl 97.6 0.00041 8.9E-09 78.5 12.6 95 78-230 176-271 (461)
285 TIGR01316 gltA glutamate synth 97.6 8.7E-05 1.9E-09 83.7 7.0 34 76-109 132-165 (449)
286 PRK12770 putative glutamate sy 97.6 0.00019 4.1E-09 78.4 9.1 32 78-109 19-50 (352)
287 PRK06567 putative bifunctional 97.6 0.00016 3.5E-09 86.5 8.8 33 76-108 382-414 (1028)
288 PRK07251 pyridine nucleotide-d 97.6 0.00047 1E-08 77.5 12.2 93 79-230 159-252 (438)
289 PRK04965 NADH:flavorubredoxin 97.6 0.00029 6.3E-09 77.6 10.2 104 78-230 3-110 (377)
290 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.0005 1.1E-08 77.0 12.1 94 78-230 138-232 (427)
291 KOG1336 Monodehydroascorbate/f 97.6 0.00051 1.1E-08 75.4 11.5 100 78-232 214-314 (478)
292 TIGR01423 trypano_reduc trypan 97.5 0.00064 1.4E-08 77.4 12.6 95 79-230 189-287 (486)
293 TIGR02053 MerA mercuric reduct 97.5 0.0006 1.3E-08 77.2 12.4 95 78-230 167-265 (463)
294 PRK07818 dihydrolipoamide dehy 97.5 0.00063 1.4E-08 77.2 12.4 94 79-230 174-272 (466)
295 PRK07208 hypothetical protein; 97.5 9.5E-05 2.1E-09 84.0 5.7 35 75-109 2-36 (479)
296 PRK07845 flavoprotein disulfid 97.5 0.00064 1.4E-08 77.2 12.3 94 79-230 179-273 (466)
297 PRK12810 gltD glutamate syntha 97.5 0.00019 4E-09 81.6 7.9 34 76-109 142-175 (471)
298 PRK12809 putative oxidoreducta 97.5 0.0011 2.3E-08 78.3 14.4 42 401-443 595-637 (639)
299 TIGR01424 gluta_reduc_2 glutat 97.5 0.00075 1.6E-08 76.1 12.7 94 79-230 168-262 (446)
300 PRK06370 mercuric reductase; V 97.5 0.00065 1.4E-08 77.0 12.2 95 78-230 172-270 (463)
301 COG0493 GltD NADPH-dependent g 97.5 0.00067 1.4E-08 76.2 11.9 32 78-109 124-155 (457)
302 PF00996 GDI: GDP dissociation 97.5 0.001 2.3E-08 74.0 13.3 55 174-230 233-287 (438)
303 PLN02507 glutathione reductase 97.5 0.00083 1.8E-08 76.9 12.8 94 79-230 205-299 (499)
304 COG0446 HcaD Uncharacterized N 97.5 0.00066 1.4E-08 74.9 11.6 97 78-230 137-236 (415)
305 PRK09564 coenzyme A disulfide 97.5 0.00068 1.5E-08 76.3 11.6 95 78-230 150-245 (444)
306 PRK06912 acoL dihydrolipoamide 97.5 0.00085 1.8E-08 76.0 12.3 93 79-230 172-267 (458)
307 TIGR01318 gltD_gamma_fam gluta 97.5 0.00023 5.1E-09 80.7 7.7 34 76-109 140-173 (467)
308 TIGR03377 glycerol3P_GlpA glyc 97.4 0.00068 1.5E-08 78.0 11.1 67 163-231 118-190 (516)
309 TIGR02374 nitri_red_nirB nitri 97.4 0.0003 6.5E-09 84.8 8.5 103 80-230 1-107 (785)
310 PTZ00058 glutathione reductase 97.4 0.00099 2.1E-08 77.1 12.4 96 78-230 238-335 (561)
311 PLN02576 protoporphyrinogen ox 97.4 0.00017 3.8E-09 82.3 5.5 34 76-109 11-45 (496)
312 PRK13512 coenzyme A disulfide 97.4 0.001 2.2E-08 74.9 11.4 90 79-230 150-240 (438)
313 KOG2403 Succinate dehydrogenas 97.4 0.0018 3.8E-08 72.1 12.6 35 75-109 53-87 (642)
314 KOG0029 Amine oxidase [Seconda 97.4 0.00019 4E-09 81.6 5.3 34 76-109 14-47 (501)
315 PRK06115 dihydrolipoamide dehy 97.4 0.0013 2.9E-08 74.5 12.3 95 78-230 175-275 (466)
316 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00019 4.1E-09 82.0 5.3 55 174-230 233-293 (492)
317 PTZ00052 thioredoxin reductase 97.4 0.0015 3.3E-08 74.7 12.5 93 79-230 184-277 (499)
318 PRK06327 dihydrolipoamide dehy 97.3 0.0016 3.4E-08 74.2 12.4 94 79-230 185-283 (475)
319 COG1252 Ndh NADH dehydrogenase 97.3 0.00062 1.4E-08 74.8 8.8 91 78-230 156-261 (405)
320 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00022 4.8E-09 78.2 5.3 32 78-109 2-33 (377)
321 PRK14989 nitrite reductase sub 97.3 0.00071 1.5E-08 81.8 10.1 103 79-230 5-112 (847)
322 PRK11883 protoporphyrinogen ox 97.3 0.00021 4.5E-09 80.3 5.1 31 79-109 2-34 (451)
323 KOG2665 Predicted FAD-dependen 97.3 0.00098 2.1E-08 69.3 9.4 34 76-109 47-82 (453)
324 PRK14727 putative mercuric red 97.3 0.0021 4.5E-08 73.2 12.8 92 79-230 190-282 (479)
325 PRK08010 pyridine nucleotide-d 97.3 0.0022 4.8E-08 72.2 12.9 93 79-230 160-253 (441)
326 PRK14694 putative mercuric red 97.3 0.0022 4.7E-08 72.8 13.0 93 78-230 179-272 (468)
327 PRK12809 putative oxidoreducta 97.3 0.00043 9.4E-09 81.6 7.4 33 77-109 310-342 (639)
328 TIGR01438 TGR thioredoxin and 97.3 0.0022 4.8E-08 73.1 12.6 93 79-230 182-278 (484)
329 TIGR00562 proto_IX_ox protopor 97.3 0.00027 6E-09 79.8 5.2 32 78-109 3-38 (462)
330 PRK10262 thioredoxin reductase 97.3 0.0019 4.2E-08 69.4 11.5 94 78-230 147-247 (321)
331 PLN02546 glutathione reductase 97.2 0.0027 5.8E-08 73.5 12.7 95 79-230 254-349 (558)
332 PLN02268 probable polyamine ox 97.2 0.00035 7.6E-09 78.4 5.2 31 79-109 2-32 (435)
333 PRK13748 putative mercuric red 97.2 0.0025 5.5E-08 74.0 12.3 92 79-230 272-364 (561)
334 PTZ00318 NADH dehydrogenase-li 97.2 0.0023 5E-08 71.7 11.2 90 79-230 175-279 (424)
335 PTZ00188 adrenodoxin reductase 97.2 0.0012 2.6E-08 74.2 8.7 32 78-109 40-72 (506)
336 COG3486 IucD Lysine/ornithine 97.2 0.0033 7.1E-08 68.0 11.6 145 75-229 3-155 (436)
337 COG0562 Glf UDP-galactopyranos 97.1 0.00058 1.3E-08 71.4 5.2 33 77-109 1-33 (374)
338 PRK06467 dihydrolipoamide dehy 97.1 0.0039 8.5E-08 70.8 12.4 93 79-230 176-273 (471)
339 KOG3923 D-aspartate oxidase [A 97.1 0.0019 4E-08 66.9 8.6 48 170-231 148-195 (342)
340 PTZ00153 lipoamide dehydrogena 97.1 0.0044 9.5E-08 72.9 12.7 30 79-108 314-343 (659)
341 TIGR01292 TRX_reduct thioredox 97.1 0.0036 7.8E-08 66.0 10.8 90 78-230 142-237 (300)
342 PRK12831 putative oxidoreducta 97.0 0.0027 5.8E-08 72.0 10.1 31 78-108 282-312 (464)
343 PRK06292 dihydrolipoamide dehy 96.9 0.0075 1.6E-07 68.2 12.7 95 78-230 170-267 (460)
344 COG1231 Monoamine oxidase [Ami 96.9 0.00079 1.7E-08 73.8 4.4 34 76-109 6-39 (450)
345 PRK12416 protoporphyrinogen ox 96.9 0.00089 1.9E-08 75.8 4.9 33 407-439 428-460 (463)
346 COG3349 Uncharacterized conser 96.9 0.00096 2.1E-08 74.3 4.8 31 79-109 2-32 (485)
347 PF13434 K_oxygenase: L-lysine 96.9 0.0034 7.5E-08 68.2 9.0 138 76-228 189-338 (341)
348 PLN02568 polyamine oxidase 96.9 0.0012 2.5E-08 76.2 5.6 34 76-109 4-42 (539)
349 PLN02676 polyamine oxidase 96.8 0.0015 3.3E-08 74.5 5.4 34 76-109 25-59 (487)
350 PRK11749 dihydropyrimidine deh 96.8 0.0049 1.1E-07 69.8 9.3 31 78-108 274-305 (457)
351 COG1232 HemY Protoporphyrinoge 96.7 0.0017 3.7E-08 72.4 4.7 31 79-109 2-34 (444)
352 COG1251 NirB NAD(P)H-nitrite r 96.7 0.0058 1.3E-07 70.5 8.9 94 80-230 148-242 (793)
353 PLN02529 lysine-specific histo 96.6 0.0022 4.8E-08 75.9 5.5 34 76-109 159-192 (738)
354 PLN02328 lysine-specific histo 96.5 0.0031 6.7E-08 75.2 5.4 34 76-109 237-270 (808)
355 PRK12778 putative bifunctional 96.3 0.014 3.1E-07 70.2 10.0 31 79-109 572-603 (752)
356 PRK12769 putative oxidoreducta 96.2 0.018 3.9E-07 68.2 9.6 41 401-442 612-653 (654)
357 TIGR03143 AhpF_homolog putativ 96.1 0.026 5.7E-07 65.5 10.3 44 399-443 266-311 (555)
358 PRK12779 putative bifunctional 96.1 0.032 7E-07 68.5 11.2 31 78-108 448-478 (944)
359 KOG1335 Dihydrolipoamide dehyd 96.0 0.03 6.5E-07 60.1 8.9 95 79-230 213-313 (506)
360 TIGR02733 desat_CrtD C-3',4' d 95.9 0.088 1.9E-06 60.2 13.3 32 78-109 2-33 (492)
361 COG3634 AhpF Alkyl hydroperoxi 95.9 0.024 5.2E-07 60.0 7.6 76 77-214 354-430 (520)
362 KOG1276 Protoporphyrinogen oxi 95.8 0.01 2.3E-07 64.4 4.7 39 78-116 12-52 (491)
363 TIGR01317 GOGAT_sm_gam glutama 95.7 0.01 2.2E-07 67.7 4.8 33 77-109 143-175 (485)
364 PLN03000 amine oxidase 95.7 0.013 2.8E-07 70.2 5.5 34 76-109 183-216 (881)
365 PLN02976 amine oxidase 95.6 0.015 3.3E-07 72.2 5.5 34 76-109 692-725 (1713)
366 PRK09853 putative selenate red 95.4 0.073 1.6E-06 65.1 10.3 32 78-109 669-702 (1019)
367 TIGR01372 soxA sarcosine oxida 95.3 0.075 1.6E-06 65.9 10.7 88 78-231 318-411 (985)
368 KOG1346 Programmed cell death 95.3 0.039 8.4E-07 59.6 6.8 53 175-230 395-448 (659)
369 PF06100 Strep_67kDa_ant: Stre 95.2 0.58 1.3E-05 52.6 15.9 57 174-231 208-274 (500)
370 PRK12775 putative trifunctiona 95.2 0.079 1.7E-06 65.7 10.2 31 78-108 572-603 (1006)
371 PRK13984 putative oxidoreducta 94.9 0.08 1.7E-06 62.2 8.6 30 78-107 419-454 (604)
372 PRK12814 putative NADPH-depend 94.6 0.14 3.1E-06 60.7 9.7 32 78-109 324-356 (652)
373 TIGR03315 Se_ygfK putative sel 94.4 0.17 3.7E-06 62.2 10.0 38 402-440 801-839 (1012)
374 COG0492 TrxB Thioredoxin reduc 94.4 0.19 4.1E-06 53.7 9.3 88 78-229 144-236 (305)
375 KOG0685 Flavin-containing amin 94.3 0.055 1.2E-06 59.8 5.0 32 78-109 22-54 (498)
376 COG2907 Predicted NAD/FAD-bind 94.1 0.042 9.1E-07 58.4 3.4 31 78-109 9-39 (447)
377 PRK06567 putative bifunctional 94.0 0.13 2.7E-06 62.5 7.8 31 78-108 551-584 (1028)
378 PLN02172 flavin-containing mon 93.5 0.14 3.1E-06 58.0 6.8 32 78-109 205-236 (461)
379 KOG1336 Monodehydroascorbate/f 93.1 0.21 4.5E-06 55.4 6.8 38 188-229 141-179 (478)
380 PF00743 FMO-like: Flavin-bind 92.7 0.3 6.4E-06 56.4 7.8 32 78-109 184-215 (531)
381 KOG2755 Oxidoreductase [Genera 92.6 0.28 6E-06 50.4 6.5 29 80-108 2-32 (334)
382 KOG2495 NADH-dehydrogenase (ub 92.5 0.65 1.4E-05 50.9 9.5 46 398-443 350-399 (491)
383 KOG4405 GDP dissociation inhib 92.3 0.15 3.3E-06 55.2 4.3 36 74-109 5-40 (547)
384 KOG0399 Glutamate synthase [Am 92.2 0.19 4E-06 60.5 5.2 35 75-109 1783-1817(2142)
385 PF02737 3HCDH_N: 3-hydroxyacy 92.1 0.17 3.7E-06 49.8 4.3 30 80-109 2-31 (180)
386 PF01210 NAD_Gly3P_dh_N: NAD-d 92.0 0.15 3.3E-06 48.9 3.6 30 80-109 2-31 (157)
387 PLN02852 ferredoxin-NADP+ redu 91.5 1.9 4E-05 49.3 12.3 39 402-441 382-422 (491)
388 PF03721 UDPG_MGDP_dh_N: UDP-g 91.3 0.19 4E-06 49.8 3.5 31 79-109 2-32 (185)
389 PF02558 ApbA: Ketopantoate re 91.2 0.29 6.4E-06 46.2 4.7 30 80-109 1-30 (151)
390 KOG2495 NADH-dehydrogenase (ub 91.0 0.86 1.9E-05 50.1 8.3 49 177-230 277-328 (491)
391 PRK01438 murD UDP-N-acetylmura 90.5 0.27 5.9E-06 56.0 4.5 30 79-108 18-47 (480)
392 PF13738 Pyr_redox_3: Pyridine 90.2 0.26 5.6E-06 48.7 3.5 32 78-109 168-199 (203)
393 PRK12771 putative glutamate sy 90.2 1.2 2.6E-05 51.9 9.4 31 78-108 268-299 (564)
394 PRK08274 tricarballylate dehyd 90.2 0.24 5.3E-06 56.1 3.6 38 406-443 417-464 (466)
395 KOG1800 Ferredoxin/adrenodoxin 89.5 0.36 7.8E-06 52.1 3.9 31 79-109 22-54 (468)
396 COG5044 MRS6 RAB proteins gera 89.4 0.62 1.3E-05 50.2 5.6 49 76-134 5-53 (434)
397 COG0686 Ald Alanine dehydrogen 89.2 0.29 6.3E-06 51.5 2.9 33 77-109 168-200 (371)
398 PRK02705 murD UDP-N-acetylmura 89.1 0.37 8E-06 54.5 4.0 30 80-109 3-32 (459)
399 TIGR02485 CobZ_N-term precorri 88.9 0.4 8.6E-06 53.8 4.1 28 82-109 1-28 (432)
400 PRK12842 putative succinate de 88.9 0.37 8.1E-06 56.3 4.0 34 76-109 8-41 (574)
401 COG0446 HcaD Uncharacterized N 88.9 1.2 2.6E-05 48.8 7.9 40 188-232 67-107 (415)
402 COG0569 TrkA K+ transport syst 88.8 0.49 1.1E-05 48.3 4.3 31 79-109 2-32 (225)
403 PF01262 AlaDh_PNT_C: Alanine 88.4 0.63 1.4E-05 45.1 4.6 32 78-109 21-52 (168)
404 TIGR01470 cysG_Nterm siroheme 88.3 0.56 1.2E-05 47.2 4.3 30 79-108 11-40 (205)
405 COG3486 IucD Lysine/ornithine 88.2 4.1 8.9E-05 44.7 10.9 44 186-230 290-339 (436)
406 KOG1346 Programmed cell death 88.2 1.1 2.3E-05 49.0 6.4 132 74-230 175-310 (659)
407 KOG1439 RAB proteins geranylge 87.9 0.34 7.4E-06 52.6 2.5 44 75-128 2-45 (440)
408 PRK06129 3-hydroxyacyl-CoA deh 87.8 0.57 1.2E-05 50.1 4.2 31 79-109 4-34 (308)
409 TIGR02354 thiF_fam2 thiamine b 87.6 0.68 1.5E-05 46.4 4.4 32 78-109 22-54 (200)
410 PF13241 NAD_binding_7: Putati 87.5 0.42 9E-06 42.4 2.5 31 78-108 8-38 (103)
411 PF00899 ThiF: ThiF family; I 87.3 0.69 1.5E-05 43.0 4.0 32 78-109 3-35 (135)
412 PRK06719 precorrin-2 dehydroge 87.3 0.74 1.6E-05 44.3 4.2 31 78-108 14-44 (157)
413 PRK14106 murD UDP-N-acetylmura 87.2 0.62 1.4E-05 52.5 4.4 32 78-109 6-37 (450)
414 PRK08293 3-hydroxybutyryl-CoA 87.1 0.71 1.5E-05 48.9 4.4 31 79-109 5-35 (287)
415 PF01488 Shikimate_DH: Shikima 87.1 0.9 1.9E-05 42.4 4.6 31 78-108 13-44 (135)
416 KOG0404 Thioredoxin reductase 86.7 3 6.5E-05 42.1 8.1 90 79-230 159-254 (322)
417 PRK09260 3-hydroxybutyryl-CoA 86.2 0.85 1.8E-05 48.3 4.4 31 79-109 3-33 (288)
418 PRK06718 precorrin-2 dehydroge 86.1 0.88 1.9E-05 45.6 4.3 31 78-108 11-41 (202)
419 PRK15116 sulfur acceptor prote 86.0 0.99 2.1E-05 47.3 4.7 32 78-109 31-63 (268)
420 PRK07819 3-hydroxybutyryl-CoA 86.0 0.85 1.8E-05 48.3 4.3 31 79-109 7-37 (286)
421 TIGR00518 alaDH alanine dehydr 86.0 0.85 1.8E-05 50.2 4.5 32 78-109 168-199 (370)
422 PLN02976 amine oxidase 85.8 20 0.00042 46.0 16.1 44 401-445 1144-1191(1713)
423 PTZ00306 NADH-dependent fumara 85.7 0.75 1.6E-05 58.2 4.3 40 406-445 859-907 (1167)
424 PRK12921 2-dehydropantoate 2-r 85.7 0.92 2E-05 48.2 4.4 30 79-108 2-31 (305)
425 COG1004 Ugd Predicted UDP-gluc 85.2 0.96 2.1E-05 49.4 4.2 31 79-109 2-32 (414)
426 PRK12834 putative FAD-binding 85.2 0.68 1.5E-05 53.8 3.4 61 173-234 148-230 (549)
427 PRK05708 2-dehydropantoate 2-r 85.1 1.1 2.3E-05 48.0 4.6 31 79-109 4-34 (305)
428 PRK06522 2-dehydropantoate 2-r 84.8 1.1 2.3E-05 47.5 4.5 30 79-108 2-31 (304)
429 PRK07066 3-hydroxybutyryl-CoA 84.8 1.1 2.3E-05 48.4 4.4 31 79-109 9-39 (321)
430 KOG0405 Pyridine nucleotide-di 84.4 3 6.5E-05 44.8 7.3 96 78-230 190-286 (478)
431 PF13478 XdhC_C: XdhC Rossmann 84.4 0.91 2E-05 42.6 3.2 30 80-109 1-30 (136)
432 PRK07688 thiamine/molybdopteri 84.4 1.2 2.7E-05 48.3 4.7 32 78-109 25-57 (339)
433 PRK06249 2-dehydropantoate 2-r 84.3 1.3 2.9E-05 47.4 4.9 32 78-109 6-37 (313)
434 PRK07530 3-hydroxybutyryl-CoA 84.2 1.4 2.9E-05 46.8 4.9 31 79-109 6-36 (292)
435 PRK09424 pntA NAD(P) transhydr 84.1 1.1 2.4E-05 51.2 4.4 32 78-109 166-197 (509)
436 cd01487 E1_ThiF_like E1_ThiF_l 84.0 1.4 3E-05 43.1 4.5 30 80-109 2-32 (174)
437 PRK06035 3-hydroxyacyl-CoA deh 84.0 1.2 2.6E-05 47.1 4.4 31 79-109 5-35 (291)
438 cd05292 LDH_2 A subgroup of L- 84.0 1.2 2.7E-05 47.6 4.5 31 79-109 2-34 (308)
439 PRK12475 thiamine/molybdopteri 83.9 1.3 2.7E-05 48.2 4.5 32 78-109 25-57 (338)
440 PF01593 Amino_oxidase: Flavin 83.8 0.97 2.1E-05 49.4 3.7 41 188-230 223-264 (450)
441 PRK05808 3-hydroxybutyryl-CoA 83.7 1.3 2.7E-05 46.8 4.3 31 79-109 5-35 (282)
442 TIGR01763 MalateDH_bact malate 83.5 1.4 3E-05 47.2 4.6 30 79-108 3-33 (305)
443 TIGR02356 adenyl_thiF thiazole 83.3 1.5 3.3E-05 43.9 4.5 32 78-109 22-54 (202)
444 PF02254 TrkA_N: TrkA-N domain 83.0 1.8 3.9E-05 38.7 4.5 30 80-109 1-30 (116)
445 cd01483 E1_enzyme_family Super 82.8 1.6 3.5E-05 40.9 4.3 30 80-109 2-32 (143)
446 TIGR02355 moeB molybdopterin s 82.6 1.7 3.6E-05 44.9 4.6 32 78-109 25-57 (240)
447 PRK12843 putative FAD-binding 82.6 1.3 2.8E-05 51.9 4.2 39 71-109 10-48 (578)
448 PRK08229 2-dehydropantoate 2-r 82.2 1.6 3.4E-05 47.3 4.4 30 79-108 4-33 (341)
449 TIGR03385 CoA_CoA_reduc CoA-di 82.0 3.3 7.1E-05 46.3 7.1 39 398-437 253-302 (427)
450 TIGR03736 PRTRC_ThiF PRTRC sys 81.9 1.7 3.7E-05 44.9 4.3 33 77-109 11-54 (244)
451 PRK12835 3-ketosteroid-delta-1 81.7 1.3 2.9E-05 51.8 3.9 37 73-109 7-43 (584)
452 COG4529 Uncharacterized protei 81.6 15 0.00033 41.4 11.7 32 78-109 197-230 (474)
453 PRK08644 thiamine biosynthesis 81.4 2 4.4E-05 43.4 4.6 32 78-109 29-61 (212)
454 cd00401 AdoHcyase S-adenosyl-L 81.3 1.8 3.8E-05 48.3 4.5 32 78-109 203-234 (413)
455 PRK12549 shikimate 5-dehydroge 81.2 1.7 3.7E-05 46.0 4.2 31 78-108 128-159 (284)
456 PRK08328 hypothetical protein; 81.1 2 4.3E-05 44.0 4.5 32 78-109 28-60 (231)
457 PRK05690 molybdopterin biosynt 80.7 2 4.4E-05 44.4 4.5 32 78-109 33-65 (245)
458 cd05311 NAD_bind_2_malic_enz N 80.1 2.2 4.9E-05 43.5 4.5 32 78-109 26-60 (226)
459 cd01080 NAD_bind_m-THF_DH_Cycl 79.6 2.6 5.6E-05 41.0 4.5 32 77-108 44-76 (168)
460 PRK06130 3-hydroxybutyryl-CoA 79.6 2.5 5.4E-05 45.2 4.9 31 79-109 6-36 (311)
461 PRK04148 hypothetical protein; 79.4 1.7 3.6E-05 40.6 3.0 30 79-109 19-48 (134)
462 TIGR03026 NDP-sugDHase nucleot 79.2 2 4.3E-05 48.0 4.1 31 79-109 2-32 (411)
463 PRK05562 precorrin-2 dehydroge 79.0 2.5 5.4E-05 43.0 4.3 31 78-108 26-56 (223)
464 cd01484 E1-2_like Ubiquitin ac 79.0 2.5 5.5E-05 43.4 4.4 30 80-109 2-32 (234)
465 PRK11064 wecC UDP-N-acetyl-D-m 78.8 2.4 5.1E-05 47.5 4.5 31 79-109 5-35 (415)
466 cd00757 ThiF_MoeB_HesA_family 78.8 2.6 5.6E-05 43.1 4.4 32 78-109 22-54 (228)
467 PRK14620 NAD(P)H-dependent gly 78.6 2.4 5.3E-05 45.6 4.5 31 79-109 2-32 (326)
468 cd01485 E1-1_like Ubiquitin ac 78.4 2.8 6.1E-05 41.8 4.5 32 78-109 20-52 (198)
469 PLN02545 3-hydroxybutyryl-CoA 78.4 2.8 6.2E-05 44.4 4.8 31 79-109 6-36 (295)
470 COG1748 LYS9 Saccharopine dehy 78.3 2.4 5.2E-05 46.7 4.3 31 79-109 3-34 (389)
471 PRK14618 NAD(P)H-dependent gly 78.3 2.8 6.2E-05 45.1 4.9 31 79-109 6-36 (328)
472 cd01339 LDH-like_MDH L-lactate 78.0 2.2 4.9E-05 45.4 3.9 29 80-108 1-30 (300)
473 PRK08223 hypothetical protein; 77.9 2.9 6.2E-05 44.2 4.5 32 78-109 28-60 (287)
474 TIGR00561 pntA NAD(P) transhyd 77.7 2.6 5.7E-05 48.1 4.5 32 78-109 165-196 (511)
475 PRK07843 3-ketosteroid-delta-1 77.6 1.8 3.9E-05 50.4 3.2 35 75-109 5-39 (557)
476 cd05291 HicDH_like L-2-hydroxy 77.6 2.7 5.9E-05 44.9 4.4 31 79-109 2-34 (306)
477 PRK11730 fadB multifunctional 77.5 2.4 5.1E-05 50.9 4.3 31 79-109 315-345 (715)
478 cd00755 YgdL_like Family of ac 77.5 3 6.5E-05 42.8 4.4 32 78-109 12-44 (231)
479 PRK02472 murD UDP-N-acetylmura 77.4 2.3 5.1E-05 47.8 4.0 31 79-109 7-37 (447)
480 PRK12839 hypothetical protein; 77.3 1.9 4E-05 50.4 3.2 35 75-109 6-40 (572)
481 cd01488 Uba3_RUB Ubiquitin act 77.2 2.7 5.9E-05 44.5 4.2 30 80-109 2-32 (291)
482 PRK06134 putative FAD-binding 77.1 2.1 4.6E-05 50.0 3.7 36 74-109 9-44 (581)
483 cd01492 Aos1_SUMO Ubiquitin ac 77.1 3.2 6.9E-05 41.5 4.4 32 78-109 22-54 (197)
484 PRK12548 shikimate 5-dehydroge 76.9 3 6.6E-05 44.2 4.5 31 78-108 127-158 (289)
485 COG1251 NirB NAD(P)H-nitrite r 76.9 9.4 0.0002 45.0 8.6 43 183-230 69-112 (793)
486 PRK00094 gpsA NAD(P)H-dependen 76.7 3 6.5E-05 44.6 4.4 31 79-109 3-33 (325)
487 cd01490 Ube1_repeat2 Ubiquitin 76.6 2.7 5.9E-05 47.0 4.1 30 80-109 2-37 (435)
488 TIGR02437 FadB fatty oxidation 76.4 2.7 5.8E-05 50.4 4.3 31 79-109 315-345 (714)
489 TIGR02279 PaaC-3OHAcCoADH 3-hy 76.3 2.9 6.3E-05 48.0 4.4 31 79-109 7-37 (503)
490 PLN00112 malate dehydrogenase 76.2 6.4 0.00014 44.3 6.9 35 75-109 98-142 (444)
491 cd01489 Uba2_SUMO Ubiquitin ac 76.1 3 6.5E-05 44.7 4.1 30 80-109 2-32 (312)
492 PLN02353 probable UDP-glucose 76.1 3.1 6.6E-05 47.4 4.5 31 79-109 3-35 (473)
493 PF00056 Ldh_1_N: lactate/mala 76.0 4 8.8E-05 38.4 4.6 30 79-108 2-34 (141)
494 cd01075 NAD_bind_Leu_Phe_Val_D 75.6 3.5 7.5E-05 41.3 4.3 30 79-108 30-59 (200)
495 PRK06223 malate dehydrogenase; 75.4 3.4 7.4E-05 44.1 4.4 30 79-108 4-34 (307)
496 PRK12837 3-ketosteroid-delta-1 75.1 2.3 5E-05 48.9 3.2 35 74-109 4-38 (513)
497 PRK12845 3-ketosteroid-delta-1 74.9 2.7 5.9E-05 49.0 3.8 35 74-109 13-47 (564)
498 PRK15057 UDP-glucose 6-dehydro 74.7 3.4 7.3E-05 45.8 4.2 30 79-109 2-31 (388)
499 PRK08306 dipicolinate synthase 74.6 3.8 8.2E-05 43.7 4.5 33 77-109 152-184 (296)
500 PRK12550 shikimate 5-dehydroge 74.4 3.9 8.4E-05 43.0 4.4 31 79-109 124-155 (272)
No 1
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.2e-174 Score=1387.26 Aligned_cols=589 Identities=53% Similarity=0.851 Sum_probs=573.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..||||||||||||++||+++||+|++|+|+..+.+++|.|+|||++||++++++++|+|++||.|++.+|.+++||+++
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCCCce
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKI 235 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~~~~ 235 (699)
|.++||++|++|+|.|+..|..+|++.+++.+|+.+++..|++|+.+++.+|+||++.+|..|.|++||++||+|+++++
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 99999999999999999999999999999999999999999999987333699999999999999999999999999999
Q ss_pred eecccccCCCCcccccchhHHHHHHHcCCcccccccCcccccCCcccccccccccCCCCCccccccCCCccCCccceeee
Q 048823 236 WVGRTSMPAGRAGESASHGLTENLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPDFHIEREQMCCY 315 (699)
Q Consensus 236 ~~g~~~~~~gr~g~~~s~~L~~~L~~~G~~~~r~ktgtppr~~~~sid~~~~~~q~~d~~~~~fs~~~~~~~~~~~~~~~ 315 (699)
|+|...+++||.|+.++.+|++.|+++||++.|||||||||++++||||+.++.|+||.++.+|||.. ....+|++||
T Consensus 163 ~iG~~~~~aGr~ge~~s~~Ls~~L~~lGf~l~RlKTGTPpRi~~~sIDfs~le~q~gD~~~~~fs~~~--~~~~~Qi~C~ 240 (621)
T COG0445 163 HIGDTNYSAGRLGEPPSIGLSDRLRELGFKLGRLKTGTPPRIDARSIDFSKLEEQPGDEPPPVFSFTT--EPHPPQIPCY 240 (621)
T ss_pred EeccccccCCCCCCccchHHHHHHHhcCcEEeeeccCCCCccCCCccChhhhccCcCCCCCCccccCC--CCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 3456799999
Q ss_pred ccCCChhHHHHHHhccccCCCCCCcccCCCCeeeeccccc---------------------------CCCCCCCHHHHHH
Q 048823 316 LTRTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK---------------------------GFSTGLPERLQLP 368 (699)
Q Consensus 316 ~~~t~~~~~~ii~~~~~~s~~~~g~i~~~g~ryc~siEdk---------------------------G~~tslp~~~q~~ 368 (699)
+|+||++||++|++|+|+||||+|.|++.||||||||||| |+|||||+++|.+
T Consensus 241 iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~~ 320 (621)
T COG0445 241 ITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQEQ 320 (621)
T ss_pred eecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHHHHH
Confidence 9999999999999999999999999999999999999998 9999999999999
Q ss_pred HHhcccCCcCCccccccccccCCCcCccccCcccccCCCCCEEEecccCCCchHHHHHHHHHHHHHHHHHHhcCCCCccC
Q 048823 369 LLRTLPGLENCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVL 448 (699)
Q Consensus 369 ~lr~ipgLe~a~i~r~gy~~eyd~i~p~~l~~~letk~i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~~~~~~~~ 448 (699)
++|+|||||||+|+||||++||||++|++|.++||||.|+|||||||||||+|||||||||++||+|||++++|++||+|
T Consensus 321 ~irsipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AGQINGTtGYEEAAaQGliAGiNAal~~~~~~p~il 400 (621)
T COG0445 321 IIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQGKEPFIL 400 (621)
T ss_pred HHHhCcccccceeeccceeeeecccChhhcccchhhceecceEEcccccCCchhHHHHhhhHHHHHHHHHHhcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHHHHHhhhhcCCCCCCcccccChHHhhhhccCCCccccCchhhHhhCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Q 048823 449 ERESSYVGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTV 528 (699)
Q Consensus 449 ~r~~~~igvl~~dl~~~~~~~pyrm~tsr~e~rl~lr~dna~~rl~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (699)
.|++||||||||||||||++||||||||||||||+||+||||+||||+|+++|||+++||+.|+++++.+++++++|+++
T Consensus 401 ~R~eaYIGVlIDDLvTkGt~EPYRmfTSRAEyRL~LR~DNAd~RLt~~g~~lGLv~~~r~~~f~~k~~~i~~~~~~L~~~ 480 (621)
T COG0445 401 RRDEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNADLRLTEIGRELGLVDDERYERFLKKKENIEEEIERLKST 480 (621)
T ss_pred ccCcceeeeEehhhhcCCCCCchhhcchHHHHHHHhhccchhhhhhHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHhhhcCCCCCCCCCHHHhhcCCCCCHHHHhccCCCCCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Q 048823 529 RISGGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRQQSQLQQMVHQ 608 (699)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~s~~~ll~rp~v~~~~l~~~~~~~~~~~~~~~~~ieie~kY~gYi~rq~~~i~~~~~~ 608 (699)
+++|++|...+..+...+.+...+++|+|+||+++|++|..+.+....++.++.++|||++||+|||+||+++|++++|+
T Consensus 481 ~v~p~~~~~~~~~~~~~~~~~~~~~~~lL~rpe~~~~~l~~~~~~~~~~~~~v~eqveieiKY~gYI~rq~~~i~~~~~~ 560 (621)
T COG0445 481 WVTPSEVAKELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPADLDAEVLEQVEIEIKYEGYIKRQQEQIEKLKRL 560 (621)
T ss_pred ecChHHHHHHHHHhhcCCcccchhHHHHhcCCCCCHHHHHHhCCcccccCHHHHhHhheehhHHHHHHHHHHHHHHHHHh
Confidence 99998888888888778888889999999999999999999887555789999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccHHHHHHhhccCCCCHHHHhcCCCCCHHHHHHHHHHHHhhh
Q 048823 609 QHRPLPPDLDYYAMTTLSLESREKLSKVRPQTIGQASRVGGVSPADITALLIILEANR 666 (699)
Q Consensus 609 e~~~IP~~~dY~~i~~LS~E~rekL~~~rP~TlgqAsRI~GVtPa~i~~L~~~l~~~~ 666 (699)
|+++||+||||+.|+|||+|+||||+++||.||||||||+|||||||++|++||++.+
T Consensus 561 e~~~IP~~~Dy~~i~~LS~Ea~~KL~~~rP~tigqAsRIsGitpadI~~Ll~~l~~~~ 618 (621)
T COG0445 561 ENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISGVTPADISILLVYLKKGK 618 (621)
T ss_pred hcccCCCCcChhhccchhHHHHHHHhhcCCCcHHHhhhcCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999754
No 2
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=100.00 E-value=1.6e-153 Score=1286.30 Aligned_cols=585 Identities=54% Similarity=0.876 Sum_probs=563.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
.+|||||||||+||++||+++|+.|++|+|||++.+.+|+++||+++||+++++++++++++|+.+..+.+..+++++++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCCCce
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKI 235 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~~~~ 235 (699)
+.++|+++|++++++|+..|...+.+.+.+.+|++++++.|+++..+ ++++.||.+.+|..+.|+.||+|||+|+++.+
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGTFL~g~i 161 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGTFLRGKI 161 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCcchhcCe
Confidence 99999999999999999999999999999888999999999999876 78899999999999999999999999999999
Q ss_pred eecccccCCCCcccccchhHHHHHHHcCCcccccccCcccccCCcccccccccccCCCCCccccccCCCccCCccceeee
Q 048823 236 WVGRTSMPAGRAGESASHGLTENLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPDFHIEREQMCCY 315 (699)
Q Consensus 236 ~~g~~~~~~gr~g~~~s~~L~~~L~~~G~~~~r~ktgtppr~~~~sid~~~~~~q~~d~~~~~fs~~~~~~~~~~~~~~~ 315 (699)
|+|....++||.|+.++.+|++.|+++||++.|||||||||++++||||++++.|.||+.|.+|||.... ...+|++||
T Consensus 162 ~iG~~~~~~Gr~g~~~a~~L~~~l~~~g~~~~r~ktgtppri~~~sid~~~~~~q~~~~~~~~fs~~~~~-~~~~~~~c~ 240 (618)
T PRK05192 162 HIGEKNYSGGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFSKLEEQPGDDPPPPFSFMTEK-IHPPQVPCY 240 (618)
T ss_pred EecccccCCCcCccccHHHHHHHHHhcCCccceecCCCCceecCCccchhhCceecCCCCCCCCCCCCCC-CCcCeeeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997542 345799999
Q ss_pred ccCCChhHHHHHHhccccCCCCCCcccCCCCeeeeccccc---------------------------CCCCCCCHHHHHH
Q 048823 316 LTRTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK---------------------------GFSTGLPERLQLP 368 (699)
Q Consensus 316 ~~~t~~~~~~ii~~~~~~s~~~~g~i~~~g~ryc~siEdk---------------------------G~~tslp~~~q~~ 368 (699)
+++|++++|+++++|++++|+|+|.|.+.||||||||||| ||||+||+++|.+
T Consensus 241 ~t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~h~v~lepeg~~~~~~y~~G~stslp~~~Q~~ 320 (618)
T PRK05192 241 ITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDRHQIFLEPEGLDTNEVYPNGISTSLPEDVQLE 320 (618)
T ss_pred CCcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCCceEEEecCCCCCCEEeccCccCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998 9999999999999
Q ss_pred HHhcccCCcCCccccccccccCCCcCccccCcccccCCCCCEEEecccCCCchHHHHHHHHHHHHHHHHHHhcCCCCccC
Q 048823 369 LLRTLPGLENCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVL 448 (699)
Q Consensus 369 ~lr~ipgLe~a~i~r~gy~~eyd~i~p~~l~~~letk~i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~~~~~~~~ 448 (699)
++|+|||||||+|+||||+||||||+|.+|+++||+|.++|||||||||||+||+||+|||++||+|||++++ ++|++|
T Consensus 321 ~~r~ipGle~a~i~r~gy~ieyd~i~p~~L~~~Le~k~~~~lf~AGQinGt~GYeEaaaqGl~AgiNaa~~~~-~~~~~~ 399 (618)
T PRK05192 321 MLRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKVQ-GEPFIL 399 (618)
T ss_pred HHhcCcCccceeEeecccceeecccChhhcchhheecCCCCeEECcccCCChHHHHHHHHHHHHHHHHHHHhc-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CccchhHHHHHhhhhcCCCCCCcccccChHHhhhhccCCCccccCchhhHhhCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Q 048823 449 ERESSYVGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTV 528 (699)
Q Consensus 449 ~r~~~~igvl~~dl~~~~~~~pyrm~tsr~e~rl~lr~dna~~rl~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (699)
+|+++|||||||||||||++||||||||||||||+||+||||+|||++||++|||+++||+.|+++++.+++.+++|+++
T Consensus 400 ~r~~~yiGvliddlvtkg~~EPYRmfTSRaEyRl~lR~DNad~RLt~~g~~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (618)
T PRK05192 400 KRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKGYELGLVDDERWARFEEKKEAIEEEIERLKST 479 (618)
T ss_pred CcchhhHHHHHHHHHhcCCCcchhhcchhhHHHHHhccccHHhHhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHhhhcCCCCCCCCCHHHhhcCCCCCHHHHhccCCCCCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Q 048823 529 RISGGDLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRQQSQLQQMVHQ 608 (699)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~s~~~ll~rp~v~~~~l~~~~~~~~~~~~~~~~~ieie~kY~gYi~rq~~~i~~~~~~ 608 (699)
+++|.+|+.. +..+++.++|++|+|+||++++++|.++.+....+++++.++|||++||+|||+||+++|++++++
T Consensus 480 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~p~~~~~~l~~~~~~~~~~~~~~~~~~~i~~kY~gyi~rq~~~~~~~~~~ 555 (618)
T PRK05192 480 RVTPDELNEL----GGDPLKREVSLLDLLRRPEITYEDLAKLDPELADLDPEVAEQVEIEIKYEGYIERQQEEIEKLKRL 555 (618)
T ss_pred ccCHHHHHhh----cCCcccCCCcHHHHhCCCCCCHHHHHhhccccccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 9999888765 445677788999999999999999998866556789999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccHHHHHHhhccCCCCHHHHhcCCCCCHHHHHHHHHHHHhhhh
Q 048823 609 QHRPLPPDLDYYAMTTLSLESREKLSKVRPQTIGQASRVGGVSPADITALLIILEANRR 667 (699)
Q Consensus 609 e~~~IP~~~dY~~i~~LS~E~rekL~~~rP~TlgqAsRI~GVtPa~i~~L~~~l~~~~~ 667 (699)
|+++||+||||++|+|||+|++|||+++||.||||||||||||||||++|++||+++++
T Consensus 556 e~~~ip~~~dy~~i~~ls~E~~~kL~~~~P~t~gqA~ri~Gvtpa~i~~l~~~l~~~~~ 614 (618)
T PRK05192 556 ENKKIPEDIDYDAISGLSNEAREKLNKIRPETIGQASRISGVTPADISILLVYLKKRGR 614 (618)
T ss_pred cCCCCcCCCCcccccchHHHHHHHHHhcCCCCHHHHHhcCCCCHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999988654
No 3
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-154 Score=1208.57 Aligned_cols=612 Identities=50% Similarity=0.774 Sum_probs=574.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..|||||||||||||+||.++||.|.+++|+..+.+++|+|+|||++||++++++++|+|+++|.+++++|.++++++++
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCC----CEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKND----NVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g----~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
|.++||++|++|+|+|+..|...|++.+...+++.+.++.|.++++.+++ .+.||.+.||..+.|+.||++||+|+
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFL 186 (679)
T ss_pred hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccce
Confidence 99999999999999999999999999999999999999999999886333 28999999999999999999999999
Q ss_pred CCceeecccccCCCCcccccchhHHHHHHHcCCcccccccCcccccCCcccccccccccCCCCCcccccc-CCCccCC-c
Q 048823 232 SGKIWVGRTSMPAGRAGESASHGLTENLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSF-DPDFHIE-R 309 (699)
Q Consensus 232 ~~~~~~g~~~~~~gr~g~~~s~~L~~~L~~~G~~~~r~ktgtppr~~~~sid~~~~~~q~~d~~~~~fs~-~~~~~~~-~ 309 (699)
++.+++|.+..|+||.|+.++.+|++.|.++||+++|+|||||||+.++||||++++.|.||+.|.|||| ..++++. .
T Consensus 187 ~~~I~iGlk~~pAGRiGe~ps~~Lse~l~klGF~~gRLKTGTPpRlak~sInfS~le~q~gD~~p~pfSFln~~v~i~~e 266 (679)
T KOG2311|consen 187 RGQINIGLKTHPAGRIGEQPSIGLSETLQKLGFELGRLKTGTPPRLAKESINFSKLERQIGDEPPIPFSFLNETVWIEPE 266 (679)
T ss_pred eeEEeeccccccCccccCCcchHHHHHHHHhCeeeccccCCCCcccccccCChHHhhhhcCCCCCCceeccCCccccChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 4444433 4
Q ss_pred cceeeeccCCChhHHHHHHhccccCCCCCCcccCCCCeeeeccccc--------------------------CCCCCCCH
Q 048823 310 EQMCCYLTRTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK--------------------------GFSTGLPE 363 (699)
Q Consensus 310 ~~~~~~~~~t~~~~~~ii~~~~~~s~~~~g~i~~~g~ryc~siEdk--------------------------G~~tslp~ 363 (699)
+|++||+++|++.+|+|+++|+|.++++.+.. .|||||||||+| |+|++||+
T Consensus 267 ~ql~cYlt~Tt~~~h~ivr~NLh~~~hv~~~~--~gPRYCPSiEsKilRFp~k~HqiwLEpEGlDs~~iYpqG~S~tlpe 344 (679)
T KOG2311|consen 267 DQLPCYLTHTTPRVHEIVRKNLHENPHVKETT--IGPRYCPSIESKILRFPDKSHQIWLEPEGLDSDLIYPQGLSNTLPE 344 (679)
T ss_pred ccCccccccCcHHHHHHHHhhhccCccccccc--cCCccCCcHHHHHhcCccccceeeecCcCCCCCcccccccccCCCH
Confidence 67999999999999999999999999988755 499999999998 99999999
Q ss_pred HHHHHHHhcccCCcCCccccccccccCCCcCccccCcccccCCCCCEEEecccCCCchHHHHHHHHHHHHHHHHHHhcCC
Q 048823 364 RLQLPLLRTLPGLENCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGK 443 (699)
Q Consensus 364 ~~q~~~lr~ipgLe~a~i~r~gy~~eyd~i~p~~l~~~letk~i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~~~ 443 (699)
+.|.+++|.||||||++|++|||+++|||++|++|.++||||+|+|||||||||||+||+||||||++||+||+....|+
T Consensus 345 e~Q~~lir~IpGLEn~~i~qP~YgVeYDyv~prQlk~sLeTkkV~GLF~AGQINGTTGYEEAAAQGIiAGiNA~~~a~~~ 424 (679)
T KOG2311|consen 345 ELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQLKPSLETKKVQGLFFAGQINGTTGYEEAAAQGIIAGINASLRASGK 424 (679)
T ss_pred HHHHHHHHhccCcccceeecccccceecccChHHcchhhhhhhccceEEeeeecCccchHHHHhhhhHhhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCccchhHHHHHhhhhcCCCCCCcccccChHHhhhhccCCCccccCchhhH-hhCCCcHHHHHHHHHHHHHHHHHH
Q 048823 444 SLIVLERESSYVGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGR-ELGLIDDRRWKVYQDKLARVSEEK 522 (699)
Q Consensus 444 ~~~~~~r~~~~igvl~~dl~~~~~~~pyrm~tsr~e~rl~lr~dna~~rl~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 522 (699)
++++++|+++|||||||||+++|++||||||||||||||+||.||||.||||+|| +.|++++.||+.|++.+..+++.+
T Consensus 425 ~~~~v~Rte~yIGvLIDDL~t~g~~EPYRMfTSRsEfRLslR~DNAD~RLT~lg~~~~~l~s~~rw~~fq~~k~~l~~~~ 504 (679)
T KOG2311|consen 425 PPVVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRSEFRLSLRPDNADSRLTPLGYKEGGLVSQQRWERFQETKSRLDEGI 504 (679)
T ss_pred CCeeeecccceeEEEehhhhccCCccchhhhcchhhheeeecCCccccccccchhhhcCcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred HHHhcccccchhhHHHHhhhcCCC--CCCCCCHHHhhcCCCCCHHHHhccCC---CCCCCCHHHHHHHHHHhcchHHHHH
Q 048823 523 RRLKTVRISGGDLAADVTRLSGQP--VKDSSTLESLLKKPHIQYEILDKHGF---GNGLLSRAEKQCVEIDIKYEGFIVR 597 (699)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~ll~rp~v~~~~l~~~~~---~~~~~~~~~~~~ieie~kY~gYi~r 597 (699)
+.|+++++++..|.+.+. +.... ......++|+|++.++++++|....+ +...++++++++++||+||++||+|
T Consensus 505 ~~lk~~k~s~~~w~~l~~-ia~~s~~~~k~~~a~d~l~~~~~d~~~L~~~~p~~~~~~~~~r~~~erl~Ie~kYe~~i~r 583 (679)
T KOG2311|consen 505 KRLKEFKLSSQKWKKLIP-IASISTSRSKPVRALDLLKFKDLDLDKLIECHPDPLKNLTIPRELAERLKIEGKYESFIVR 583 (679)
T ss_pred HHHHHhhhhHHHHHhhcc-ccccccccccchhhhhhhccccccHHHHHHhccchhhcccchHHHHhheeeeeeehhHHHH
Confidence 999999999999988765 33222 22345699999999999999988776 3445789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHhhccCCCCHHHHhcCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 048823 598 QQSQLQQMVHQQHRPLPPDLDYYAMTTLSLESREKLSKVRPQTIGQASRVGGVSPADITALLIILEANRRKAQEQMRHQV 677 (699)
Q Consensus 598 q~~~i~~~~~~e~~~IP~~~dY~~i~~LS~E~rekL~~~rP~TlgqAsRI~GVtPa~i~~L~~~l~~~~~~~~~~~~~~~ 677 (699)
|+++++.++++|++.||+|+||..+++||.|+||||+++||+||||||||+||||++|..||.|++.....+....+.-|
T Consensus 584 q~q~~q~~~~de~~~lP~D~Dy~tm~~lS~E~rekL~~vrP~TIg~asRI~GvtpaaI~~Llr~v~~~~~~~s~~~~~~~ 663 (679)
T KOG2311|consen 584 QQQEKQGVQRDEALQLPDDLDYLTMRTLSLECREKLHRVRPQTIGAASRIQGVTPAAIIRLLRHVKTNQRRQSAMNESSK 663 (679)
T ss_pred HHHHHHHHhHHhhhcCCcccccccccccCHHHHHHhhhcCchhhhhhhhcCCCCHHHHHHHHHHhhcchhhhhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999987766666556666
Q ss_pred HHHHHhhcccCCC
Q 048823 678 LASVRADSNQQSE 690 (699)
Q Consensus 678 ~~~~~~~~~~~~~ 690 (699)
..-.-+||+.+.+
T Consensus 664 ~~~~l~~s~~~q~ 676 (679)
T KOG2311|consen 664 TDYYLCDSDRLQE 676 (679)
T ss_pred hhHHhhccchhhh
Confidence 6666667765443
No 4
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=100.00 E-value=2e-147 Score=1234.48 Aligned_cols=588 Identities=53% Similarity=0.846 Sum_probs=560.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
|||+|||||+||+++|.++++.|.+|+|+|++.+..++++|+++.||+++++++++++++|+.+....|...+++++++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 79999999999999999999999999999998777888999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCCCceee
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWV 237 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~~~~~~ 237 (699)
++++++|.+++++|+..|...+.+.+++.+++++++..|+++..++++++.+|.+.+|..+.|+.||+|||+|+++++|+
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCCCEEe
Confidence 99999999999999999999999999999999999989999876535789999999999999999999999999999999
Q ss_pred cccccCCCCcccccchhHHHHHHHcCCcccccccCcccccCCcccccccccccCCCCCccccccCCCccCCccceeeecc
Q 048823 238 GRTSMPAGRAGESASHGLTENLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPDFHIEREQMCCYLT 317 (699)
Q Consensus 238 g~~~~~~gr~g~~~s~~L~~~L~~~G~~~~r~ktgtppr~~~~sid~~~~~~q~~d~~~~~fs~~~~~~~~~~~~~~~~~ 317 (699)
|....++||.|+.++.+|++.|+++||++.|||||||||++++||||++++.|+||+.|.+|||........+|++||++
T Consensus 161 g~~~~~~Gr~~~~~a~~l~~~l~~~g~~~~r~ktgtppri~~~sid~~~~~~q~gd~~~~~fs~~~~~~~~~~~~~C~~t 240 (617)
T TIGR00136 161 GDKSYSAGRAGEQPSIGLSTTLRELGFKVGRLKTGTPPRIDKRSIDFSKLEVQHGDNPPPAFSFMNKNFLPLQQLPCYLT 240 (617)
T ss_pred cccccCCCCCcchhhHHHHHHHHhcCCcccccCCCCCceecCCccCHHhcccccCCCCCCCCCCCCCCCCCCCcccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999995432223479999999
Q ss_pred CCChhHHHHHHhccccCCCCCCcccCCCCeeeeccccc---------------------------CCCCCCCHHHHHHHH
Q 048823 318 RTTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK---------------------------GFSTGLPERLQLPLL 370 (699)
Q Consensus 318 ~t~~~~~~ii~~~~~~s~~~~g~i~~~g~ryc~siEdk---------------------------G~~tslp~~~q~~~l 370 (699)
+|++++|+++++|++++|+|+|.+.+.|||||||||+| ||+|+||+++|.+++
T Consensus 241 ~t~~~~h~ii~~~~~~s~~~~g~i~~~GpRYCpsIe~k~~~f~~~~~h~v~lepe~~~~~~~~~~G~st~lp~~~q~~i~ 320 (617)
T TIGR00136 241 HTNPKTHDLIRSNLHRSPMYSGVIEGNGPRYCPSIEDKVVRFADKERHQIFLEPEGLNSDEIYPNGLSTSLPEDVQLQIV 320 (617)
T ss_pred cCcHHHHHHHHhccccccccCcccCCCCCCCCCCHHHHHhhcCCCCCceEEEeecCCCCCeEEecCeecCCCHHHHHHHH
Confidence 99999999999999999999999999999999999987 999999999999999
Q ss_pred hcccCCcCCccccccccccCCCcCccccCcccccCCCCCEEEecccCCCchHHHHHHHHHHHHHHHHHHhcCCCCccCCc
Q 048823 371 RTLPGLENCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLER 450 (699)
Q Consensus 371 r~ipgLe~a~i~r~gy~~eyd~i~p~~l~~~letk~i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~~~~~~~~~r 450 (699)
++||||+|++|+||||++||||++|++|+++||+|.++|||||||++||+||+|||+||++||+||+++++|++|++|+|
T Consensus 321 ~~ipGle~a~~~r~gy~~e~~~i~p~~l~~~le~k~~~gLf~AGqi~Gt~Gy~eAaa~Gl~Ag~naa~~~~~~~~~~l~r 400 (617)
T TIGR00136 321 RSIPGLENAEILRPGYAIEYDFFDPRQLKPTLETKLIQGLFFAGQINGTTGYEEAAAQGLMAGINAALKLQNKEPFILKR 400 (617)
T ss_pred HcCcCcccceEeccccceEEeEEChhhCchhheeCCCCCeEEccccCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhhhcCCCCCCcccccChHHhhhhccCCCccccCchhhHhhCCCcHHHHHHHHHHHHHHHHHHHHHhcccc
Q 048823 451 ESSYVGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGRELGLIDDRRWKVYQDKLARVSEEKRRLKTVRI 530 (699)
Q Consensus 451 ~~~~igvl~~dl~~~~~~~pyrm~tsr~e~rl~lr~dna~~rl~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (699)
+++|||||||||||||++||||||||||||||+||+||||+|||++||++|||+++||+.|+++++.+++.++.|+++++
T Consensus 401 ~~~yiGvliddlvtkg~~EPYRmfTSRaE~Rl~lR~dNAd~RL~~~g~~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 480 (617)
T TIGR00136 401 SEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADFRLTEIGRELGLIDDERYARFLKKKENIEEEIQRLKSTWL 480 (617)
T ss_pred ccchHhHHHHHHHhcCCCcchhhccchhHHHHHhccccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cch-hhHHHHhhhcCCCCCCCCCHHHhhcCCCCCHHHHhccCCCCCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Q 048823 531 SGG-DLAADVTRLSGQPVKDSSTLESLLKKPHIQYEILDKHGFGNGLLSRAEKQCVEIDIKYEGFIVRQQSQLQQMVHQQ 609 (699)
Q Consensus 531 ~~~-~~~~~~~~~~~~~~~~~~s~~~ll~rp~v~~~~l~~~~~~~~~~~~~~~~~ieie~kY~gYi~rq~~~i~~~~~~e 609 (699)
+|. +++..+...+..++..++|++|+|+||+|++++|..+.+....+++++.+++||++||+|||+||+++|++++++|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~kY~~yi~rq~~~~~~~~~~e 560 (617)
T TIGR00136 481 TPSKEVKEELKNHLQSPLKREASGEDLLRRPEMNLEKLTKLTPFLPALDEEVLEQVEIQIKYEGYIKKQQDEIKKLDRLE 560 (617)
T ss_pred CccHHHHHHHHhhcCCCCCCCccHHHHhCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhc
Confidence 994 4444555555666777899999999999999999987654335688999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccHHHHHHhhccCCCCHHHHhcCCCCCHHHHHHHHHHHHhh
Q 048823 610 HRPLPPDLDYYAMTTLSLESREKLSKVRPQTIGQASRVGGVSPADITALLIILEAN 665 (699)
Q Consensus 610 ~~~IP~~~dY~~i~~LS~E~rekL~~~rP~TlgqAsRI~GVtPa~i~~L~~~l~~~ 665 (699)
+++||+||||++|+|||+|++|||+++||.||||||||||||||||+.|++||+++
T Consensus 561 ~~~ip~~~dy~~i~~ls~E~~ekL~~~rP~tlgqA~ri~Gvtpa~i~~l~~~l~k~ 616 (617)
T TIGR00136 561 NVKIPATFDYRKVPGLSTEAREKLSKFRPLSIGQASRISGITPADISILLVYLKKQ 616 (617)
T ss_pred CCCCcCCCCcccccchhHHHHHHHhhcCCCCHHHHhcCCCCCHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999864
No 5
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=100.00 E-value=3.3e-81 Score=670.71 Aligned_cols=364 Identities=55% Similarity=0.883 Sum_probs=326.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
||+|||||+|||+||+++|+.|++|+|+....+.++.++||+++||.+++++++|++++|+.+.+++|...++++++|.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 89999999999999999999999999998878999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCCCceeec
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVG 238 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~~~~~~g 238 (699)
+||+++++|+++|+..|.+.+++.+++++++++++++|++|..+ +++++||.+.+|..+.||.||+|||+|+++.+|+|
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e-~~~v~GV~~~~g~~~~a~~vVlaTGtfl~G~~~iG 159 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVE-NGKVKGVVTKDGEEIEADAVVLATGTFLNGCIHIG 159 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEEC-TTEEEEEEETTSEEEEECEEEE-TTTGBTSEEEET
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEec-CCeEEEEEeCCCCEEecCEEEEecccccCceeeee
Confidence 99999999999999999999999999999999999999999987 79999999999999999999999999999999999
Q ss_pred ccccCCCCcccccchhHHHHHHHcCCcccccccCcccccCCcccccccccccCCCCCccccccCCCccCCccceeeeccC
Q 048823 239 RTSMPAGRAGESASHGLTENLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPDFHIEREQMCCYLTR 318 (699)
Q Consensus 239 ~~~~~~gr~g~~~s~~L~~~L~~~G~~~~r~ktgtppr~~~~sid~~~~~~q~~d~~~~~fs~~~~~~~~~~~~~~~~~~ 318 (699)
....+.||.|+.++..|++.|+++|+++.||+||||||++++||||+.++.|.+|+.|.+|||.... ...+|++||+++
T Consensus 160 ~~~~~~Gr~ge~~s~~l~~~L~~~g~~~~r~ktgtpprv~~~SId~~~~~~q~gd~~~~~fs~~~~~-~~~~q~~~~~t~ 238 (392)
T PF01134_consen 160 ERCPPGGRRGELTSDGLSESLRKLGFELGRFKTGTPPRVDKDSIDFSKLEEQPGDDKPIPFSYLNCP-MNKEQYPCFITY 238 (392)
T ss_dssp TEEEECSCTTCC-BCHHHHHHHHTTGGEEEEEEEE--EEEGGGS-CTCSEEEE-TSSTC-SSSSCCS-TSHHHHHEEEEE
T ss_pred ecccccCCCccccchHHHHHHHhhCCceEEEecCCCceeccCCcCHHHHHhhhccCCCCCccccCCc-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997653 356899999999
Q ss_pred CChhHHHHHHhccccCC-CCCCcccCCCCeeeeccccc---------------------------CCCCCCCHHHHHHHH
Q 048823 319 TTKRTHQLIKDNLHETP-TYGGWVEAKGPRYCPAIEDK---------------------------GFSTGLPERLQLPLL 370 (699)
Q Consensus 319 t~~~~~~ii~~~~~~s~-~~~g~i~~~g~ryc~siEdk---------------------------G~~tslp~~~q~~~l 370 (699)
|+.++|.++++|.+.+| +|.|.|++.|||||||||+| ||||+||+++|++++
T Consensus 239 t~~~~~~~i~~~~~~s~~~~~g~ie~~gpRycpsie~K~v~f~~~~~h~v~Lepe~~~~~~~y~~G~stslp~~~Q~~~~ 318 (392)
T PF01134_consen 239 TNEATHEIIRDNLHRSPDLFEGCIEGIGPRYCPSIEDKPVRFPDRPYHQVFLEPEGLNTNEYYPNGFSTSLPWDVQKRIF 318 (392)
T ss_dssp HHHHHHHHHHHTCCG-T-T-TT-CHHCHCCCTTCHHHHHTTSTSTSSEEEEEEESSTTS-EEEEETS-CSS-HHHHHHHH
T ss_pred hhHHHHHHHHhccccCcceecceeEEeccCCccchhcccccccCCCCEEEEEEecCCCCceEEecCCcCCCCHHHHHHHh
Confidence 99999999999999999 99999999999999999987 999999999999999
Q ss_pred hcccCCcCCccccccccccCCCcCccccCcccccCCCCCEEEecccCCCchHHHHHHHHHHHHHHHHHHhcCCC
Q 048823 371 RTLPGLENCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKS 444 (699)
Q Consensus 371 r~ipgLe~a~i~r~gy~~eyd~i~p~~l~~~letk~i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~~~~ 444 (699)
|+|||||||+|+||||+|+|||++|++|.++||+|.+||||||||++|++||+||+|||++||+||+++++|++
T Consensus 319 r~IpGLe~a~~~r~Gy~~ey~~v~~~~l~~~l~~k~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~~~~g~e 392 (392)
T PF01134_consen 319 RSIPGLENAEILRPGYAHEYDFVDPPQLLNTLETKKIPGLFFAGQINGTEGYEEAAAQGLIAGINAARRLQGKE 392 (392)
T ss_dssp TTSTTTTT--EEE--EEEEEEEE-GGGBBTTSBBSSSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred hcCCChhcChhhheEEeeeeeEEehhhcccceEECCCCCceECCCCcchhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999975
No 6
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=100.00 E-value=1.6e-63 Score=542.16 Aligned_cols=360 Identities=28% Similarity=0.381 Sum_probs=307.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee---------cccccCCCCCCCCCCC----ccchhhHHHHhhcCccchhh
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN---------IDKIAWQPCNPAVGGP----AKSQLVHEVDALGGEIGKVA 145 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---------~~~~g~~~c~~s~Gg~----~~~~l~~el~~lg~~~~~~~ 145 (699)
||+|||||++|+++|++||++|.+|+|+|+. .+.++.++|+++.|+. +.+.+.++++.+|+.+...+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~a 81 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITAA 81 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeehh
Confidence 7999999999999999999999999999964 3345678999999998 67888999999998776555
Q ss_pred chhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEE
Q 048823 146 DMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVL 225 (699)
Q Consensus 146 d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVl 225 (699)
+...+ ++.+.. ++|+..|.+.+.+.+++++++++++.+|+++.. .|.||+
T Consensus 82 d~~~I----------pagg~~--~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~------------------~d~VVi 131 (433)
T TIGR00137 82 DRHAV----------PAGGAL--AVDRGIFSRSLTEQVASHPNVTLIREEVTEIPE------------------EGITVI 131 (433)
T ss_pred hhhCC----------CCCceE--EehHHHHHHHHHHHHHhCCCcEEEeeeeEEEcc------------------CCeEEE
Confidence 54433 233322 679999999999999999999999988988752 258999
Q ss_pred ecCCCCCCceeecccccCCCCcccccchhHHHHHHHc-CCcccccccCcccccCCcccccccccccCCCCCccccccCCC
Q 048823 226 TTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRL-GFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPD 304 (699)
Q Consensus 226 AtG~~~~~~~~~g~~~~~~gr~g~~~s~~L~~~L~~~-G~~~~r~ktgtppr~~~~sid~~~~~~q~~d~~~~~fs~~~~ 304 (699)
|||+.+ +..|++.|+.+ |+.+.++++++||+++++||||++++ |++...
T Consensus 132 ATG~~~--------------------s~~La~~L~~~~g~~~~~~~da~~p~i~~~sId~~~~~----------~~~r~~ 181 (433)
T TIGR00137 132 ATGPLT--------------------SPALSEDLKELTGMDYLYFYDAAAPIVEGDSIDKEKAF----------FASRYD 181 (433)
T ss_pred eCCCCc--------------------cHHHHHHHHHhhCCceEEEecCcCcEEecCCCCcceEE----------eeccCC
Confidence 999973 68999999995 99999999999999999999999976 333211
Q ss_pred ccCCccceeeeccCCCh--------hHHHHHHhccccCCCCCCcccCCCCeeeecccc------c---------------
Q 048823 305 FHIEREQMCCYLTRTTK--------RTHQLIKDNLHETPTYGGWVEAKGPRYCPAIED------K--------------- 355 (699)
Q Consensus 305 ~~~~~~~~~~~~~~t~~--------~~~~ii~~~~~~s~~~~g~i~~~g~ryc~siEd------k--------------- 355 (699)
....++++||+++++. ++|+++.++++++++|+| |||||+ |
T Consensus 182 -~~~~~yl~cplt~~e~~~f~~~l~~~~~~~~~~~~~~~~~~g---------C~~iE~~a~~g~k~~rf~~~kp~gl~~p 251 (433)
T TIGR00137 182 -KGEAAYLNCPFTEEEYFNFWEALCEAEQVPLKDFEKAKFFEG---------CLPIEEMAQRGEKTMLFGPMKPVGLFDP 251 (433)
T ss_pred -CCCcceeeCCcCcccHHHHHHHHHHHhhhhhhccccCcccCC---------CCCHHHHhhcCCceEecCCCCccCCCCC
Confidence 1224699999999998 888999999999999987 777777 2
Q ss_pred -------------------------CCCCCCCHHHHHHHHhcccCCcCCccccccccccCCCcCc-cccCcccccCCCCC
Q 048823 356 -------------------------GFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDYLPA-HQCYRSLMTKKVEG 409 (699)
Q Consensus 356 -------------------------G~~tslp~~~q~~~lr~ipgLe~a~i~r~gy~~eyd~i~p-~~l~~~letk~i~g 409 (699)
||||+|||++|++++|+|||||||+|+||||+|+|||+|| .+|+++||+|.++|
T Consensus 252 ~~~~~~~~~v~l~~e~~~~~~~~~~G~~t~l~~~~Q~~~~r~ipgle~a~~~r~g~~~~~~~i~~p~~L~~~l~~k~~~~ 331 (433)
T TIGR00137 252 RTGKKPYAVVQLRQEDKAGTLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFVRMGVMHRNTFINSPQLLTASLHFKDRQT 331 (433)
T ss_pred CCCCCCceEEEEeccccCCCEEecccccCCCCHHHHHHHHhcCcCccceEEeecceEEeeeeeCCHHHhhHHhccCCCCC
Confidence 9999999999999999999999999999999999999995 88999999999999
Q ss_pred EEEecccCCCchHHHHHHHHHHHHHHHHHHhcCCCCccCCccchhHHHHHhhhhcCCCCCCcccccChHHhhhhccCCCc
Q 048823 410 LFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNA 489 (699)
Q Consensus 410 Lf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~~~~~~~~~r~~~~igvl~~dl~~~~~~~pyrm~tsr~e~rl~lr~dna 489 (699)
||||||||||+||+||+|||++||+|||++++|++|++++ +++|||||+|||+|+..++..+|-.+ |.|
T Consensus 332 lf~AGQi~G~~GY~Eaaa~Gl~agina~~~~~~~~~~~~~-~~~~iG~l~~~l~~~~~~~~qp~~~n---~gl------- 400 (433)
T TIGR00137 332 LFFAGQLTGVEGYVASTAGGWLAGINAARLALGEPLLTLP-AETMMGALFNYISTASPKHFQPMNPN---FGL------- 400 (433)
T ss_pred EEECcccccchHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CcchHHHHHHHHhcCCCCCCCCCCCc---ccc-------
Confidence 9999999999999999999999999999999999999999 57799999999999999999999999 884
Q ss_pred cccCchhhHhhCCCcHHHHHHHHHHHHHHHHHH
Q 048823 490 DSRLTPLGRELGLIDDRRWKVYQDKLARVSEEK 522 (699)
Q Consensus 490 ~~rl~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 522 (699)
+.|++.++.-..+++....++..+.+++++
T Consensus 401 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (433)
T TIGR00137 401 ---LPELPQKIRNKKERYEQYADRALETLTTWQ 430 (433)
T ss_pred ---CCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 555654444444455556666666665544
No 7
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=100.00 E-value=1.6e-61 Score=522.66 Aligned_cols=359 Identities=26% Similarity=0.369 Sum_probs=305.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee---------cccccCCCCCCCCCCC----ccchhhHHHHhhcCccchh
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN---------IDKIAWQPCNPAVGGP----AKSQLVHEVDALGGEIGKV 144 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---------~~~~g~~~c~~s~Gg~----~~~~l~~el~~lg~~~~~~ 144 (699)
.||+|||||++|+++|++||++|++|+|+|+. .+.++.++|+++.++. ..+.+.++++.+|+.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~~a 82 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIMEA 82 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcchheec
Confidence 48999999999999999999999999999964 2336778999999886 5667778888888765544
Q ss_pred hchhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEE
Q 048823 145 ADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVV 224 (699)
Q Consensus 145 ~d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VV 224 (699)
.+...+ |+.+.+ .+|+..|.+.|.+.++++++++++..+|+++. + | .||
T Consensus 83 ad~~~v----------PA~gaL--vvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~-~------------~------~vi 131 (436)
T PRK05335 83 ADAHRV----------PAGGAL--AVDREGFSEYVTEALENHPLITVIREEVTEIP-E------------D------ITI 131 (436)
T ss_pred ccccCC----------CCccce--ecCHHHHHHHHHHHHHcCCCcEEEccchhccc-c------------C------CEE
Confidence 333222 333333 67999999999999999999999888888874 1 1 899
Q ss_pred EecCCCCCCceeecccccCCCCcccccchhHHHHHHHc-CCcccccccCcccccCCcccccccccccCCCCCccccccCC
Q 048823 225 LTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRL-GFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDP 303 (699)
Q Consensus 225 lAtG~~~~~~~~~g~~~~~~gr~g~~~s~~L~~~L~~~-G~~~~r~ktgtppr~~~~sid~~~~~~q~~d~~~~~fs~~~ 303 (699)
+|||+. ++..|++.|+++ |++..+|+||+||+++.+||||++++.|.+++...
T Consensus 132 iatG~~--------------------~s~~l~~~l~~~~g~~~~~f~~~~~p~v~~~sid~~~~~~~~~~~~~~------ 185 (436)
T PRK05335 132 IATGPL--------------------TSDALAEAIKALTGEDYLYFFDAAAPIVDKDSIDMDKVYLASRYDKGE------ 185 (436)
T ss_pred EeCCCC--------------------chHHHHHHHHHhcCCccceecCCCCceecCCccCHHHceeccCCCCCC------
Confidence 999997 489999999998 99999999999999999999999999999775322
Q ss_pred CccCCccceeeeccC----------CChhHHHHHHhccccCCCCCCcccCCCCeeeeccccc------------------
Q 048823 304 DFHIEREQMCCYLTR----------TTKRTHQLIKDNLHETPTYGGWVEAKGPRYCPAIEDK------------------ 355 (699)
Q Consensus 304 ~~~~~~~~~~~~~~~----------t~~~~~~ii~~~~~~s~~~~g~i~~~g~ryc~siEdk------------------ 355 (699)
.++++||+++ ++.+ .++.++++++++|+| ||+||++
T Consensus 186 -----~~~~~C~~~~~~y~~f~~~l~~~~--~~~~~~~~~~~~f~g---------C~~iE~~a~r~~~~~~~gp~kpvgl 249 (436)
T PRK05335 186 -----ADYLNCPMTKEEYEAFYEALIAAE--KAELKDFEKEKYFEG---------CMPIEVMAERGRETLRFGPMKPVGL 249 (436)
T ss_pred -----ccceeCCCChHHHhhhHHhhcCHh--HhhhcccccCcccCC---------CCCHHHHHhhcccccccCCCCcccc
Confidence 4699999999 4554 678899999999987 6666653
Q ss_pred ----------------------------CCCCCCCHHHHHHHHhcccCCcCCccccccccccCCCcC-ccccCcccccCC
Q 048823 356 ----------------------------GFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDYLP-AHQCYRSLMTKK 406 (699)
Q Consensus 356 ----------------------------G~~tslp~~~q~~~lr~ipgLe~a~i~r~gy~~eyd~i~-p~~l~~~letk~ 406 (699)
||||+|||++|++++|+||||++|+|+|+||+|+|||++ |..++++||+|.
T Consensus 250 ~~p~~~~~~~a~v~L~~e~~~~~~~~~~Gfqt~l~~~~Q~~~~r~Ipgle~a~~~r~G~~~~~~~i~~p~~l~~~l~~k~ 329 (436)
T PRK05335 250 TDPRTGKRPYAVVQLRQDNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKK 329 (436)
T ss_pred cCcccCCCcceEEEEecCCCCCCeEecccccCCCCHHHHHHHHhcccchhceEEEeceEEeeccccCChhhCchhccccC
Confidence 999999999999999999999999999999999999999 788999999999
Q ss_pred CCCEEEecccCCCchHHHHHHHHHHHHHHHHHHhcCCCCccCCccchhHHHHHhhhhcCCCCCCcccccChHHhhhhccC
Q 048823 407 VEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLIDDLVTKDLREPYRMLTSRSEHRLLLRS 486 (699)
Q Consensus 407 i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~~~~~~~~~r~~~~igvl~~dl~~~~~~~pyrm~tsr~e~rl~lr~ 486 (699)
+||||||||++|++||+||++||++||+||+++++|++|++++|+++ ||||+|||++...+...+|-.+ |.
T Consensus 330 ~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~~~~~-iG~l~~~l~~~~~~~~qpm~~n---~g----- 400 (436)
T PRK05335 330 RPNLFFAGQITGVEGYVESAASGLLAGINAARLALGKEPVIPPPTTA-LGALLNYITGANPKHFQPMNAN---FG----- 400 (436)
T ss_pred CCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCc-HHHHHHHHhcCCCCCCCCCCCc---cc-----
Confidence 99999999999999999999999999999999999999999999985 9999999998877889999999 98
Q ss_pred CCccccCchhhHhhCC--CcHHHHHHHHHHHHHHHHHHH
Q 048823 487 DNADSRLTPLGRELGL--IDDRRWKVYQDKLARVSEEKR 523 (699)
Q Consensus 487 dna~~rl~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~ 523 (699)
-+.|++.+++. ..+++....++..+.+++++.
T Consensus 401 -----l~~~~~~~~~~~~k~~~~~~~~~ra~~~~~~~~~ 434 (436)
T PRK05335 401 -----LFPPLGKRIRGEDKKERKEAYAERALADLKEWLK 434 (436)
T ss_pred -----cCCcchhhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 56677666663 444556666666666665543
No 8
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-49 Score=398.58 Aligned_cols=370 Identities=25% Similarity=0.353 Sum_probs=306.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee---------cccccCCCCCCCCCCC----ccchhhHHHHhhcCccchhh
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN---------IDKIAWQPCNPAVGGP----AKSQLVHEVDALGGEIGKVA 145 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---------~~~~g~~~c~~s~Gg~----~~~~l~~el~~lg~~~~~~~ 145 (699)
.|.|||||.||.+|||++|++|++|.|.|+. .+.++.+.|+.+.++. +.+-+..|++.+|+.+...+
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii~~A 84 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLIIEAA 84 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHHHHhhhHHhhhh
Confidence 4899999999999999999999999999986 5567889999999886 34567788999998888777
Q ss_pred chhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEE
Q 048823 146 DMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVL 225 (699)
Q Consensus 146 d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVl 225 (699)
|...+ |+..++ .+|+..|.+.+.+.++++|.|++++.+|++|..+ +.+|+
T Consensus 85 d~~~V----------PAGgAL--AVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~d------------------g~~vI 134 (439)
T COG1206 85 DKHRV----------PAGGAL--AVDRDGFSQAVTEKLENHPLIEVIREEVTEIPPD------------------GITVI 134 (439)
T ss_pred hhccC----------CCCcee--eecHhHHHHHHHHHHhcCCCEEEEccccccCCCC------------------CcEEE
Confidence 76543 555555 6899999999999999999999999999988532 26799
Q ss_pred ecCCCCCCceeecccccCCCCcccccchhHHHHHHHc-CCcccccccCcccccCCcccccccccccCCCCCccccccCCC
Q 048823 226 TTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRL-GFETDRLKTGTPSRVDLRTVDFSGLEPQHGDEEVSWFSFDPD 304 (699)
Q Consensus 226 AtG~~~~~~~~~g~~~~~~gr~g~~~s~~L~~~L~~~-G~~~~r~ktgtppr~~~~sid~~~~~~q~~d~~~~~fs~~~~ 304 (699)
|||+.. ++.|++.++++ |-+...|.....|.++.+|||+++++.+. .|++
T Consensus 135 ATGPLT--------------------s~~La~~i~~ltG~d~l~FyDAaAPIi~~dSIdmd~~~~~s--------RYdK- 185 (439)
T COG1206 135 ATGPLT--------------------SDALAEKIKELTGEDYLYFYDAAAPIIEFDSIDMDKAYLKS--------RYDK- 185 (439)
T ss_pred ecCCCC--------------------CHHHHHHHHHhhCCceEEeecccCceeeccccchHHHHhhh--------cccc-
Confidence 999984 79999999877 88877788888899999999999987665 2322
Q ss_pred ccCCccceeeeccCCChhH---------------------------HHHHHhccccCCCCC-----CcccC---CCC--e
Q 048823 305 FHIEREQMCCYLTRTTKRT---------------------------HQLIKDNLHETPTYG-----GWVEA---KGP--R 347 (699)
Q Consensus 305 ~~~~~~~~~~~~~~t~~~~---------------------------~~ii~~~~~~s~~~~-----g~i~~---~g~--r 347 (699)
....+++|.++...+.. -+.+++.+.++..|+ |+.+. .|+ .
T Consensus 186 --g~a~YiNCPmtkEey~~F~eaL~~ae~~~~k~fEk~~~FegCmPIE~mA~rG~~Tl~~GPmKPvGL~~p~~~tgk~pY 263 (439)
T COG1206 186 --GEADYINCPMTKEEYLAFYEALIEAEKAPLKDFEKEKYFEGCMPIEVMAERGRKTLRFGPMKPVGLEDPRDPTGKRPY 263 (439)
T ss_pred --ccchhhcCCCCHHHHHHHHHHHHhcccCChhhhcccccccccCcHHHHHhhCcchhccCCCCCcCCCCCCCCCCCCce
Confidence 22567777775543211 034677777777766 44443 343 3
Q ss_pred eeecc--ccc--------CCCCCCCHHHHHHHHhcccCCcCCccccccccccCCCcCcc-ccCcccccCCCCCEEEeccc
Q 048823 348 YCPAI--EDK--------GFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDYLPAH-QCYRSLMTKKVEGLFFSGQI 416 (699)
Q Consensus 348 yc~si--Edk--------G~~tslp~~~q~~~lr~ipgLe~a~i~r~gy~~eyd~i~p~-~l~~~letk~i~gLf~AGqi 416 (699)
.+.|+ +|+ ||+|.|.|.+|++++++|||||||+|+|+|++|.+.||+.+ .|+++|+.|+.|+||||||+
T Consensus 264 AVVQLRqdna~GtLynmVGFQT~LkwgeQkrVf~mIPgLeNAefvRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQi 343 (439)
T COG1206 264 AVVQLRQDNAAGTLYNMVGFQTHLKWGEQKRVFRMIPGLENAEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQI 343 (439)
T ss_pred EEEEeeccccccceeeeeeeeeccchhhhhhhhhhcCCcchhhhhhccceecccccCChhhhhHHhhcccCCCcEEeeee
Confidence 44555 444 99999999999999999999999999999999999999955 58999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCCCccCCccchhHHHHHhhhhcCCCCCCcccccChHHhhhhccCCCccccCchh
Q 048823 417 NGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYVGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPL 496 (699)
Q Consensus 417 ~G~~Gy~eA~a~G~~Ag~naa~~~~~~~~~~~~r~~~~igvl~~dl~~~~~~~pyrm~tsr~e~rl~lr~dna~~rl~~~ 496 (699)
+|++||.|++|+|++||+|||+..+|++|+++|.++ +||.|++++++.+-....+|-.+ |. -|.|+
T Consensus 344 tG~EGYveSaA~Gllag~naa~~~~g~~~~~~P~tT-~~Gal~~yIt~~~~k~FQPMn~N---FG----------l~p~L 409 (439)
T COG1206 344 TGVEGYVESAASGLLAGINAARLALGEEPLIPPPTT-ALGALVNYITGAGKKSFQPMNVN---FG----------LLPEL 409 (439)
T ss_pred ecchhhhHHhhhhHHHhhHHHHHhcCCCCCCCCchh-HHHHHHHHHhcCCccCcccCCCC---cc----------cCCcc
Confidence 999999999999999999999999999999999987 79999999999999999999999 99 67788
Q ss_pred hHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 048823 497 GRELGLIDDRRWKVYQDKLARVSEEKR 523 (699)
Q Consensus 497 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 523 (699)
-.+|....+++-+..++..+.+..++.
T Consensus 410 ~~rir~K~~r~~~~a~RAL~~~~~~~~ 436 (439)
T COG1206 410 EKRIRDKKERYEKLAERALEDLKNWLK 436 (439)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHh
Confidence 888888777666666666666655543
No 9
>PF13932 GIDA_assoc_3: GidA associated domain 3; PDB: 3CES_C 3CP2_A 3G05_A 3CP8_A 2ZXI_B 2ZXH_A.
Probab=99.95 E-value=2.7e-29 Score=206.52 Aligned_cols=72 Identities=51% Similarity=0.863 Sum_probs=62.7
Q ss_pred hcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccHHHHHHhhccCCCCHHHHhcCCCCCHHHHHHHHH
Q 048823 589 IKYEGFIVRQQSQLQQMVHQQHRPLPPDLDYYAMTTLSLESREKLSKVRPQTIGQASRVGGVSPADITALLI 660 (699)
Q Consensus 589 ~kY~gYi~rq~~~i~~~~~~e~~~IP~~~dY~~i~~LS~E~rekL~~~rP~TlgqAsRI~GVtPa~i~~L~~ 660 (699)
+||+|||+||+++|++++++|+++||+||||++|+|||+|++|||+++||.|||||+||+|||||||..||+
T Consensus 1 iKY~~Yi~rq~~~i~~~~~~e~~~iP~~~dy~~i~~LS~E~~ekL~~~rP~Ti~~A~rI~GvtPa~i~~Llv 72 (72)
T PF13932_consen 1 IKYEGYIERQQQEIERLRKDESLKIPEDFDYSKIPGLSNEAREKLEKIRPRTIGQASRIPGVTPAAISLLLV 72 (72)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHHHTTSTTS-HHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCCCChhhccccHHHHHHHHHhcCCCCHHHHHhCCCCCHHHHHHHhC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999984
No 10
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.88 E-value=2.5e-23 Score=228.64 Aligned_cols=327 Identities=19% Similarity=0.266 Sum_probs=163.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeec------ccccCCCCCCCCCCCcc----------chhhHH-HHhhcC-
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNI------DKIAWQPCNPAVGGPAK----------SQLVHE-VDALGG- 139 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~------~~~g~~~c~~s~Gg~~~----------~~l~~e-l~~lg~- 139 (699)
|||+|||||+||+.||+.|++.|++|+|+|++. -..|++.||.++..... ..+++. +..++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999971 12567889865522211 111111 221110
Q ss_pred ccchhhchhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEE
Q 048823 140 EIGKVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNF 218 (699)
Q Consensus 140 ~~~~~~d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i 218 (699)
.+..+....++.... ...+ .++ | .......+.+.|.+.+++. +++++ +++|.++..+ +++++.|.+.++..+
T Consensus 81 d~~~ff~~~Gv~~~~--~~~g-r~f-P-~s~~a~~Vv~~L~~~l~~~-gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~ 153 (409)
T PF03486_consen 81 DLIAFFEELGVPTKI--EEDG-RVF-P-KSDKASSVVDALLEELKRL-GVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEY 153 (409)
T ss_dssp HHHHHHHHTT--EEE---STT-EEE-E-TT--HHHHHHHHHHHHHHH-T-EEE-S--EEEEEEE-TTEEEEEEETTTEEE
T ss_pred HHHHHHHhcCCeEEE--cCCC-EEC-C-CCCcHHHHHHHHHHHHHHc-CCEEEeCCEeeeeeec-CCceeEeeccCcccc
Confidence 000111111111100 0011 111 1 1124567889999999887 88887 7999999886 677899999777799
Q ss_pred ecCeEEEecCCCCCCceeecccccCCCCcccccchhHHHHHHHcCCcccccccCccc-c----------cCCcc------
Q 048823 219 YAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRLGFETDRLKTGTPS-R----------VDLRT------ 281 (699)
Q Consensus 219 ~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~s~~L~~~L~~~G~~~~r~ktgtpp-r----------~~~~s------ 281 (699)
.||.||+|||+.+. ...|..|+. ..+ ++++|+.+..+....-| . +.+-+
T Consensus 154 ~a~~vILAtGG~S~---------p~~GS~G~g--y~~---a~~lGh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~~~ 219 (409)
T PF03486_consen 154 EADAVILATGGKSY---------PKTGSDGSG--YRI---AKKLGHTITPPYPALVPLKCDEPWLFFKELSGVRLKAVIS 219 (409)
T ss_dssp EESEEEE----SSS---------GGGT-SSHH--HHH---HHHTT--EEEEEEES--EE--HHHHHTGGGTT-EEEEEEE
T ss_pred cCCEEEEecCCCCc---------cccCCCcHH--HHH---HHHCCCcEecCCCccCCeeecchhhhhhhhCCCceeeEEE
Confidence 99999999998741 113444332 223 34556544322111100 0 00000
Q ss_pred -ccccccccc--------CCCCCccccccCCCcc-----CCccceeeec--cCCChhHHHHHHhccccCCC------CCC
Q 048823 282 -VDFSGLEPQ--------HGDEEVSWFSFDPDFH-----IEREQMCCYL--TRTTKRTHQLIKDNLHETPT------YGG 339 (699)
Q Consensus 282 -id~~~~~~q--------~~d~~~~~fs~~~~~~-----~~~~~~~~~~--~~t~~~~~~ii~~~~~~s~~------~~g 339 (699)
++-.....+ .|-+.|..|+.+.... .....+..-+ ..+.++..+.+.+.....+. +.|
T Consensus 220 ~~~~~~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~~~~~~~i~id~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~ 299 (409)
T PF03486_consen 220 LLDGKKKASETGELLFTHYGISGPAILQLSRFIARALNKKKKVEISIDFLPDLSEEELEELLQERKEKNPKRTLKNFLKG 299 (409)
T ss_dssp EE-ECTCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH--TTEEEEEESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTT
T ss_pred EeccCCccceeeeEEEECCccchHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 001111122 2224455554443320 1111121111 33334445554443322221 222
Q ss_pred cccCCCCeeeecc-cccCC------CCCCCHHHHHHHHhccc----------CCcCCccccccccccCCCcCccccC-cc
Q 048823 340 WVEAKGPRYCPAI-EDKGF------STGLPERLQLPLLRTLP----------GLENCSMLRPAYAVEYDYLPAHQCY-RS 401 (699)
Q Consensus 340 ~i~~~g~ryc~si-EdkG~------~tslp~~~q~~~lr~ip----------gLe~a~i~r~gy~~eyd~i~p~~l~-~~ 401 (699)
.+ ..++.+.+ +..|+ ...++.++..++.+.+. |+++|++++.|+. ..+++ .|
T Consensus 300 ~l---p~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g~~~~~~A~VT~GGV~-------~~eid~~T 369 (409)
T PF03486_consen 300 LL---PKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTGTGGFDKAQVTAGGVD-------LKEIDPKT 369 (409)
T ss_dssp TS----HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESEE--TTT-SEEEEEE--------GGGB-TTT
T ss_pred Hh---HHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecccCCCceEEEECCCcC-------HHHCCHhh
Confidence 22 22333221 22233 34678888887775553 8899999999864 56666 48
Q ss_pred cccCCCCCEEEecccCCC----chHH--HHHHHHHHHHHH
Q 048823 402 LMTKKVEGLFFSGQINGT----TGYE--EAAAQGIISGIN 435 (699)
Q Consensus 402 letk~i~gLf~AGqi~G~----~Gy~--eA~a~G~~Ag~n 435 (699)
||+|.+||||||||+.++ .||+ |||++|++||.|
T Consensus 370 meSk~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 370 MESKLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp -BBSSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH-
T ss_pred hcccCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhCC
Confidence 999999999999999988 6775 999999999975
No 11
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.88 E-value=4.8e-22 Score=210.06 Aligned_cols=332 Identities=19% Similarity=0.227 Sum_probs=179.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeec------ccccCCCCCCCCCCCccchhhHHHHh----hcCccchhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNI------DKIAWQPCNPAVGGPAKSQLVHEVDA----LGGEIGKVA 145 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~------~~~g~~~c~~s~Gg~~~~~l~~el~~----lg~~~~~~~ 145 (699)
+.+||+|||||+||++||..+++.|.+|+|+|++. -..|.+.||-.+-.. ..++....-. +.+.+.++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhCCCcchHHHHHHHhCC
Confidence 35899999999999999999999999999999871 124677898776544 2111111100 000111111
Q ss_pred chhhhhHH------hhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEE
Q 048823 146 DMCYLQKR------VLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNF 218 (699)
Q Consensus 146 d~~~i~~~------~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i 218 (699)
..+-+.+- +.....|.... .......+.+.|...+++. ||+++ +++|.++..+ +....+.+.+|.+|
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp---~sdkA~~Iv~~ll~~~~~~-gV~i~~~~~v~~v~~~--~~~f~l~t~~g~~i 154 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFP---DSDKASPIVDALLKELEAL-GVTIRTRSRVSSVEKD--DSGFRLDTSSGETV 154 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecC---CccchHHHHHHHHHHHHHc-CcEEEecceEEeEEec--CceEEEEcCCCCEE
Confidence 11111110 00111111110 0123456788889999987 99997 7999999875 46788999999899
Q ss_pred ecCeEEEecCCCCCCceeecccccCCCCcccccchhHHHHHHHcCCcccccccCcccccCCccccccc---cccc-----
Q 048823 219 YAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRLGFETDRLKTGTPSRVDLRTVDFSG---LEPQ----- 290 (699)
Q Consensus 219 ~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~s~~L~~~L~~~G~~~~r~ktgtppr~~~~sid~~~---~~~q----- 290 (699)
+||.+|+|||+.|- ...|..|.. ..+ ++++|+.+..+....-| -++|++. +.-.
T Consensus 155 ~~d~lilAtGG~S~---------P~lGstg~g--y~i---A~~~G~~I~~~rpalvp----ft~~~~~~~~l~gls~~~v 216 (408)
T COG2081 155 KCDSLILATGGKSW---------PKLGSTGFG--YPI---ARQFGHTITPLRPALVP----FTLDESFLERLAGLSLKSV 216 (408)
T ss_pred EccEEEEecCCcCC---------CCCCCCchh--hHH---HHHcCCccccCccccCC----ccCCHHHHHHhcCCcccce
Confidence 99999999998752 113333332 333 36677776444322211 1122211 1111
Q ss_pred --------------------CCCCCccccccCCCcc--CCccceeeec----cCCChhHH-HHHHhccccCCCCCCcccC
Q 048823 291 --------------------HGDEEVSWFSFDPDFH--IEREQMCCYL----TRTTKRTH-QLIKDNLHETPTYGGWVEA 343 (699)
Q Consensus 291 --------------------~~d~~~~~fs~~~~~~--~~~~~~~~~~----~~t~~~~~-~ii~~~~~~s~~~~g~i~~ 343 (699)
.|-+.|..+..+.... .........+ ..+.++.. ++.+++.+++. .+-+-..
T Consensus 217 ~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~~~~~~~~~~i~iDllP~~~~~~l~~~l~~~~~~ksl-kn~L~~~ 295 (408)
T COG2081 217 PLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWRLLEKKGGATLSIDLLPDVDAEELLRELRRANPKKSL-KNALAKL 295 (408)
T ss_pred EEEEecCCCceeecceEEEecCCcHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHhhChhhHH-HHHHHHH
Confidence 1111121111110000 0000011111 00111110 11222221110 0000001
Q ss_pred CCCeeeec-ccccCC----CCCCCHHHHHHHHhccc----------CCcCCccccccccccCCCcCccccC-cccccCCC
Q 048823 344 KGPRYCPA-IEDKGF----STGLPERLQLPLLRTLP----------GLENCSMLRPAYAVEYDYLPAHQCY-RSLMTKKV 407 (699)
Q Consensus 344 ~g~ryc~s-iEdkG~----~tslp~~~q~~~lr~ip----------gLe~a~i~r~gy~~eyd~i~p~~l~-~~letk~i 407 (699)
.+.|+.+- ++..|+ ...+++.+..++...|. ++++|.++..| |+..+++ .||++|.+
T Consensus 296 lp~rlv~~~l~~~~i~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~GG-------V~~~eid~kTmesk~v 368 (408)
T COG2081 296 LPKRLVEFLLERAGIPDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAGG-------VDTKEIDSKTMESKKV 368 (408)
T ss_pred hhhHHHHHHHHhccCCCcchhhcCHHHHHHHHHHHhcCeeeccCCcccceeEEecCc-------eehhhcCHHHHHhhcC
Confidence 12233322 122233 33567777777777666 45555555555 4567777 67999999
Q ss_pred CCEEEecccCCC----chHH--HHHHHHHHHHHHHHHHh
Q 048823 408 EGLFFSGQINGT----TGYE--EAAAQGIISGINAARHS 440 (699)
Q Consensus 408 ~gLf~AGqi~G~----~Gy~--eA~a~G~~Ag~naa~~~ 440 (699)
|||||||++.++ .||+ +||++|+.||..++.++
T Consensus 369 PGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 369 PGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred CCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 999999998887 5564 99999999999999864
No 12
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.71 E-value=4.2e-17 Score=180.39 Aligned_cols=318 Identities=20% Similarity=0.277 Sum_probs=160.6
Q ss_pred EEECCChHHHHHHHHHHHcCCceeEEeeecc------cccCCCCCCCCCCCccchhhHHHHhhcCc-------cchhhch
Q 048823 81 IVVGGGHAGCEAALASARLGAKTLLLTLNID------KIAWQPCNPAVGGPAKSQLVHEVDALGGE-------IGKVADM 147 (699)
Q Consensus 81 vVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~------~~g~~~c~~s~Gg~~~~~l~~el~~lg~~-------~~~~~d~ 147 (699)
+|||||++|++||+.|++.|++|+|+|++.. ..|...||........ .+ .+..+.. ...+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~-~~---~~~~~~~~~~~~~~l~~~~~~ 76 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTP-EF---VAYYPRNGKFLRSALSRFSNK 76 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcch-hH---HHhcCCCcHHHHHHHHhCCHH
Confidence 5999999999999999999999999999621 1234456544322110 00 0111100 0000000
Q ss_pred hhhhHHhhccCCCccc------cccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEec
Q 048823 148 CYLQKRVLNTSRGPAV------WALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYA 220 (699)
Q Consensus 148 ~~i~~~~~~~s~g~~~------~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~A 220 (699)
. ...++.. .|-.+ +..........+...+.+.+++. +++++ ++.|+++..+ +..+.|++ ++.++.|
T Consensus 77 d--~~~~~~~-~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~-gv~i~~~~~V~~i~~~--~~~~~v~~-~~~~i~a 149 (400)
T TIGR00275 77 D--LIDFFES-LGLELKVEEDGRVFPCSDSAADVLDALLNELKEL-GVEILTNSKVKSIKKD--DNGFGVET-SGGEYEA 149 (400)
T ss_pred H--HHHHHHH-cCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEec--CCeEEEEE-CCcEEEc
Confidence 0 0111110 11000 00001123456788888888876 78876 6899999754 34566777 4558999
Q ss_pred CeEEEecCCCCCCceeecccccCCCCcccccchhHHHHHHHcCCcccccccCc-c--------cccCCccc----c-c--
Q 048823 221 PSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRLGFETDRLKTGT-P--------SRVDLRTV----D-F-- 284 (699)
Q Consensus 221 d~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~s~~L~~~L~~~G~~~~r~ktgt-p--------pr~~~~si----d-~-- 284 (699)
|.||+|+|+++.. ..|..|+. ..+ ++.+|..+..+.... | ..+.+-++ . +
T Consensus 150 d~VIlAtG~~s~p---------~~gs~G~g--~~l---a~~lG~~i~~~~P~l~~l~~~~~~~~~l~Gv~~~~~~~~~~~ 215 (400)
T TIGR00275 150 DKVILATGGLSYP---------QLGSTGDG--YEI---AESLGHTIVPPVPALVPLTLDESFLKELSGISLDGVVLSLVN 215 (400)
T ss_pred CEEEECCCCcccC---------CCCCCcHH--HHH---HHHCCCCEecccceEeEEEeCCcccccCCCCcCccEEEEecC
Confidence 9999999998521 12333332 222 244555432111000 0 00100000 0 0
Q ss_pred -ccccccCCC--------CCccccccCCCccC---Cccc----eeeeccCCChhHHHHHHhccccCC------CCCCccc
Q 048823 285 -SGLEPQHGD--------EEVSWFSFDPDFHI---EREQ----MCCYLTRTTKRTHQLIKDNLHETP------TYGGWVE 342 (699)
Q Consensus 285 -~~~~~q~~d--------~~~~~fs~~~~~~~---~~~~----~~~~~~~t~~~~~~ii~~~~~~s~------~~~g~i~ 342 (699)
.....+.|| +.|..++.+..... .... +.+.-..+.++..+.+.......+ .+.|.+
T Consensus 216 ~~~~~~~~g~llft~~gisG~~vl~~s~~~~~~~~~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l- 294 (400)
T TIGR00275 216 GKKVLEEFGDLLFTHFGLSGPAILDLSAFAARALLKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKGLL- 294 (400)
T ss_pred CcEEEeecccEEEECCCcCHHHHHHHHHHHHHHhhcCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChhhhHHHHhhhhh-
Confidence 000111222 22333322111000 0001 111112223333333332111110 011111
Q ss_pred CCCCeeeecc-cccCCC-----CCCCHHHHHHHHhccc----------CCcCCccccccccccCCCcCccccC-cccccC
Q 048823 343 AKGPRYCPAI-EDKGFS-----TGLPERLQLPLLRTLP----------GLENCSMLRPAYAVEYDYLPAHQCY-RSLMTK 405 (699)
Q Consensus 343 ~~g~ryc~si-EdkG~~-----tslp~~~q~~~lr~ip----------gLe~a~i~r~gy~~eyd~i~p~~l~-~~letk 405 (699)
..++.+-+ +.-|+. ..++.++...++..+. |+++|++++.|+ +..+++ .|||+|
T Consensus 295 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt~GGv-------~~~ei~~~~m~~k 365 (400)
T TIGR00275 295 --PKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVTAGGV-------SLKEINPKTMESK 365 (400)
T ss_pred --hHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEecCcc-------cchhcChhhhhhc
Confidence 22333222 222432 3466666666655443 788888888885 466776 699999
Q ss_pred CCCCEEEecccCCC----chHH--HHHHHHHHHH
Q 048823 406 KVEGLFFSGQINGT----TGYE--EAAAQGIISG 433 (699)
Q Consensus 406 ~i~gLf~AGqi~G~----~Gy~--eA~a~G~~Ag 433 (699)
.+||||||||+.++ .||+ +||++|++||
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 99999999999887 6675 9999999998
No 13
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.65 E-value=2.1e-14 Score=165.58 Aligned_cols=168 Identities=20% Similarity=0.202 Sum_probs=94.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--------c----hhhHHHHhhcCcc--
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--------S----QLVHEVDALGGEI-- 141 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~----~l~~el~~lg~~~-- 141 (699)
.++||||||||.||++||+.+++.|.+|+||||.....+ .+..+.|+++. . .+..+....+...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g--~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d 81 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS--HSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVD 81 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC--cchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCC
Confidence 358999999999999999999999999999999622111 11122232210 0 0111111111110
Q ss_pred ----chhhchhhhhHHhhcc--------CCC------c-ccccccc----ccCHHHHHHHHHHHHHccCCeEEE-eeEEE
Q 048823 142 ----GKVADMCYLQKRVLNT--------SRG------P-AVWALRA----QTDKREYAMRMKNIVESTANLCIR-EAMVT 197 (699)
Q Consensus 142 ----~~~~d~~~i~~~~~~~--------s~g------~-~~~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~ 197 (699)
..+.+...-...|+.. ..+ . ....+|. ......+...|.+.+.+. +++++ ++.++
T Consensus 82 ~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~~~~ 160 (566)
T PRK06452 82 QDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGL-NVDFYNEWFSL 160 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhC-CCEEEeCcEEE
Confidence 0111111111111110 000 0 0000011 113456777888878775 89987 69999
Q ss_pred EEEecCCCCEEEEEEcC---cc--EEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 198 DILLGKNDNVEGVCTFF---GM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 198 ~l~~e~~g~v~gV~t~d---G~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
+|+.+ +|+|+||...+ |. .+.|+.||+|||+|.. ++ ...+.+.+..|+.
T Consensus 161 ~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~--l~-~~~~~~~~~tGDG 214 (566)
T PRK06452 161 DLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGM--LY-RHTTNSYINTGDG 214 (566)
T ss_pred EEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCcccc--cc-CCCCCCCCcChHH
Confidence 99987 78999998653 32 6789999999999952 22 2233444555554
No 14
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=1.2e-13 Score=160.19 Aligned_cols=154 Identities=23% Similarity=0.204 Sum_probs=88.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccc----------hhhHHHHhhcCcc----
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKS----------QLVHEVDALGGEI---- 141 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~----------~l~~el~~lg~~~---- 141 (699)
.++||||||||.||++||+.|++.|.+|+||||.... ...+..+.||++.. ....+....+...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~--~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 88 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT--RSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQD 88 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC--CcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHH
Confidence 4699999999999999999999999999999996221 11112223333210 0111111111110
Q ss_pred --chhhch----------hhhhHHhhcc------C-CCccc------ccccc----ccCHHHHHHHHHHHHHccCCeEEE
Q 048823 142 --GKVADM----------CYLQKRVLNT------S-RGPAV------WALRA----QTDKREYAMRMKNIVESTANLCIR 192 (699)
Q Consensus 142 --~~~~d~----------~~i~~~~~~~------s-~g~~~------~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~ 192 (699)
..+.+. .++.|..... . .+... ...|. ......+...|.+.+.+. +++++
T Consensus 89 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~-gi~i~ 167 (598)
T PRK09078 89 AIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKH-NAEFF 167 (598)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhc-CCEEE
Confidence 011111 1111111000 0 00000 00010 112446778888888775 88987
Q ss_pred -eeEEEEEEecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCC
Q 048823 193 -EAMVTDILLGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 193 -~~~V~~l~~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
++.|++|+.+++++|+||.. .+|. .|.|+.||+|||+|..
T Consensus 168 ~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 168 IEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred EeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 69999998863478999875 3554 7889999999999964
No 15
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.61 E-value=5.5e-14 Score=162.62 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCCCceeecccccCCC
Q 048823 172 KREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAG 245 (699)
Q Consensus 172 ~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~g 245 (699)
...+...|.+.+.+. |++++ ++.|++|..+ +++|.||.. .+|. .+.|+.||+|||++... + +....+.+
T Consensus 134 G~~i~~~L~~~~~~~-gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~--~-~~~~~~~~ 208 (575)
T PRK05945 134 GHAILHELVNNLRRY-GVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV--F-NTTSNDYA 208 (575)
T ss_pred hHHHHHHHHHHHhhC-CCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC--C-CCCCCCCC
Confidence 356788888888775 89987 6999999876 688888864 3554 68999999999999642 1 23344445
Q ss_pred Ccccc
Q 048823 246 RAGES 250 (699)
Q Consensus 246 r~g~~ 250 (699)
..|+.
T Consensus 209 ~tGdG 213 (575)
T PRK05945 209 STGDG 213 (575)
T ss_pred CccHH
Confidence 55544
No 16
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.61 E-value=1.2e-13 Score=159.73 Aligned_cols=168 Identities=21% Similarity=0.233 Sum_probs=94.2
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCceeEEeeecccccCCCCCCCCCCCcc--------chhhHHHHhhcCcc-----
Q 048823 77 RFDVIVVGGGHAGCEAALASARL--GAKTLLLTLNIDKIAWQPCNPAVGGPAK--------SQLVHEVDALGGEI----- 141 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~~l~~el~~lg~~~----- 141 (699)
++||||||||.||++||+.|++. |.+|+||||... ....+..+.||++. ..+..+....|...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~--~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP--MRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC--CCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 58999999999999999999987 479999999622 11122222233211 11112211112111
Q ss_pred -chhhchhhhhHHhhcc--------CCC-------cccccccc----ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEE
Q 048823 142 -GKVADMCYLQKRVLNT--------SRG-------PAVWALRA----QTDKREYAMRMKNIVESTANLCIR-EAMVTDIL 200 (699)
Q Consensus 142 -~~~~d~~~i~~~~~~~--------s~g-------~~~~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~ 200 (699)
..+.+...-...|+.. ..| ......|. ......+...|.+.+.+.++++++ ++.|++|.
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 0111111111111110 000 00000010 112456777888877776789987 69999998
Q ss_pred ecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 201 LGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 201 ~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
.+ ++++.||.. .+|. .+.|+.||+|||+++.. + ...+.+.+..|+.
T Consensus 162 ~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l--~-~~~t~~~~~tGdG 212 (582)
T PRK09231 162 VD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV--Y-RYNTNGGIVTGDG 212 (582)
T ss_pred Ee-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC--C-CCCCCCCCCccHH
Confidence 86 688988764 3563 78999999999998642 1 1233344455554
No 17
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.61 E-value=2.5e-13 Score=157.87 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=96.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc------c----hhhHHHHhhcCcc----
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK------S----QLVHEVDALGGEI---- 141 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~------~----~l~~el~~lg~~~---- 141 (699)
.++||||||||.||++||+.+++.|++|+||||... ....+..+.||++. . ....+....+...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~--~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~ 105 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP--TRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQD 105 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC--CCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 469999999999999999999999999999999622 11122223333321 0 0111111111110
Q ss_pred --chhhchhhhhHHhhcc--------CCC---------ccc------ccccc----ccCHHHHHHHHHHHHHccCCeEEE
Q 048823 142 --GKVADMCYLQKRVLNT--------SRG---------PAV------WALRA----QTDKREYAMRMKNIVESTANLCIR 192 (699)
Q Consensus 142 --~~~~d~~~i~~~~~~~--------s~g---------~~~------~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~ 192 (699)
..+.+...-...|+.. ..| ... ...|. ......+...|.+.+.+. |++++
T Consensus 106 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~-gv~i~ 184 (617)
T PTZ00139 106 AIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKY-DCNFF 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhC-CCEEE
Confidence 0111111111111100 000 000 00010 113457888888888875 89987
Q ss_pred -eeEEEEEEecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 193 -EAMVTDILLGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 193 -~~~V~~l~~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
++.|++|+.+++++|.||.. .+|. .+.|+.||+|||+|... + .....+.+..|+.
T Consensus 185 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~--~-~~~t~~~~~tGdG 245 (617)
T PTZ00139 185 IEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA--Y-FSCTSAHTCTGDG 245 (617)
T ss_pred eceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc--c-CCcCCCCCcccHH
Confidence 69999998743789999875 3554 68899999999999542 2 1233344445554
No 18
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.60 E-value=1.5e-14 Score=166.06 Aligned_cols=170 Identities=24% Similarity=0.257 Sum_probs=95.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--------chhhHHHHhhcCcc-----
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--------SQLVHEVDALGGEI----- 141 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~~l~~el~~lg~~~----- 141 (699)
+.++||||||+|.||++||+.+++ |.+|+||||.... ...+..+.|++.. ...+.++...+...
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~--gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~l 83 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK--TSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEA 83 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC--CCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 457999999999999999999974 9999999996221 1122222333321 11122221111110
Q ss_pred -chhhchhhhhHHhhcc-------CCC-------cccccccc----ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEe
Q 048823 142 -GKVADMCYLQKRVLNT-------SRG-------PAVWALRA----QTDKREYAMRMKNIVESTANLCIR-EAMVTDILL 201 (699)
Q Consensus 142 -~~~~d~~~i~~~~~~~-------s~g-------~~~~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~ 201 (699)
..+.+...-...|+.. ..+ .....++. ......+...|.+.+.+.++++++ ++.|++|+.
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~ 163 (553)
T PRK07395 84 VRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWL 163 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhee
Confidence 0111111111111110 000 00000110 112456778888888766689987 599999987
Q ss_pred cC-CCCEEEEEEc-Ccc--EEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 202 GK-NDNVEGVCTF-FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 202 e~-~g~v~gV~t~-dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
++ +++|+||.+. +|. .+.|+.||+|||++.. .+ .....+.+..|+.
T Consensus 164 ~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~--~~-~~~tn~~~~tGdG 213 (553)
T PRK07395 164 EPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ--VF-AQTTNPAVSTGDG 213 (553)
T ss_pred cCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc--cc-CCccCccchhhHH
Confidence 63 3789998754 454 4789999999999854 22 2234445555554
No 19
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.60 E-value=1.7e-13 Score=158.63 Aligned_cols=154 Identities=20% Similarity=0.187 Sum_probs=87.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC---CceeEEeeecccccCCCCCCCCCCCcc------c----hhhHHHHhhcCcc-
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLG---AKTLLLTLNIDKIAWQPCNPAVGGPAK------S----QLVHEVDALGGEI- 141 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G---~kV~LlE~~~~~~g~~~c~~s~Gg~~~------~----~l~~el~~lg~~~- 141 (699)
.++||+|||||.||++||+.|++.| .+|+||||... ....+..+.||++. + ....+....+...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~--~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP--MRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC--CCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 3589999999999999999999998 89999999621 11112222233211 0 0111111111110
Q ss_pred -----chhhchhhhhHHhhcc--------CCCcc-------cccccc----ccCHHHHHHHHHHHHHccCCeEEE-eeEE
Q 048823 142 -----GKVADMCYLQKRVLNT--------SRGPA-------VWALRA----QTDKREYAMRMKNIVESTANLCIR-EAMV 196 (699)
Q Consensus 142 -----~~~~d~~~i~~~~~~~--------s~g~~-------~~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~-~~~V 196 (699)
..+.+...-...|+.. ..|.. ...++. ......+...|.+.+.+.++++++ ++.|
T Consensus 82 d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v 161 (577)
T PRK06069 82 DQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFV 161 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEE
Confidence 1111111111112110 00000 000010 112345777788877765689987 5899
Q ss_pred EEEEecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCC
Q 048823 197 TDILLGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 197 ~~l~~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
++|..+ +++++||.. .+|. .|.|+.||+|||++..
T Consensus 162 ~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 162 TSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred EEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 999876 688988864 3554 5899999999999854
No 20
>PLN02815 L-aspartate oxidase
Probab=99.58 E-value=6.6e-14 Score=161.53 Aligned_cols=171 Identities=20% Similarity=0.234 Sum_probs=96.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCc--------cchhhHHHHhhcCcc-----
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPA--------KSQLVHEVDALGGEI----- 141 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~--------~~~l~~el~~lg~~~----- 141 (699)
..++||||||+|.||++||+.+++.| +|+|||+.....+ .+..+.||++ ...++.++...+...
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg--~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~l 103 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES--NTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEET 103 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC--cHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHH
Confidence 34689999999999999999999999 9999999622111 1111223221 111222222212110
Q ss_pred -chhhch----------hhhhHHhhcc------CCCccccccc----cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEE
Q 048823 142 -GKVADM----------CYLQKRVLNT------SRGPAVWALR----AQTDKREYAMRMKNIVESTANLCIR-EAMVTDI 199 (699)
Q Consensus 142 -~~~~d~----------~~i~~~~~~~------s~g~~~~~~r----~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l 199 (699)
..+.+. .++.|..... ..+. ....| .......+...|.+.+.+.++++++ ++.+++|
T Consensus 104 v~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg-~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~L 182 (594)
T PLN02815 104 VRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGG-HSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDL 182 (594)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCC-CccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhee
Confidence 011111 1122210000 0000 00001 1124556788888888777789987 5999999
Q ss_pred EecCCC---CEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecccccCCCCcccccc
Q 048823 200 LLGKND---NVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESAS 252 (699)
Q Consensus 200 ~~e~~g---~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~s 252 (699)
+.++++ +|+||... +|. .|.|+.||+|||+|.. +......+.+..|+...
T Consensus 183 i~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~---~~~~ttn~~~~tGDGi~ 240 (594)
T PLN02815 183 LTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH---IYPSTTNPLVATGDGIA 240 (594)
T ss_pred eeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee---eCCCCCCCCCcccHHHH
Confidence 875334 28898753 454 6789999999999953 22334445556666533
No 21
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.58 E-value=2.9e-13 Score=157.44 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=96.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc------c----hhhHHHHhhcCcc----
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK------S----QLVHEVDALGGEI---- 141 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~------~----~l~~el~~lg~~~---- 141 (699)
.++||||||||.||++||+.+++.|++|+||||.... ...+..+.||++. . ....+....+...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~--~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~ 126 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT--RSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 126 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC--CCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHH
Confidence 4689999999999999999999999999999996211 1111222233211 0 0111111111110
Q ss_pred --chhhchhhhhHHhhcc--------CCCc------ccc---------ccc----cccCHHHHHHHHHHHHHccCCeEEE
Q 048823 142 --GKVADMCYLQKRVLNT--------SRGP------AVW---------ALR----AQTDKREYAMRMKNIVESTANLCIR 192 (699)
Q Consensus 142 --~~~~d~~~i~~~~~~~--------s~g~------~~~---------~~r----~~~d~~~~~~~L~~~l~~~~gv~i~ 192 (699)
..+.+...-...++.. ..|. ..+ ..+ .......+...|.+.+.+. +++++
T Consensus 127 lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~-gv~i~ 205 (635)
T PLN00128 127 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKH-NTQFF 205 (635)
T ss_pred HHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhC-CCEEE
Confidence 0111111111111100 0000 000 001 0113456788888888775 89887
Q ss_pred -eeEEEEEEecCCCCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecccccCCCCcccccc
Q 048823 193 -EAMVTDILLGKNDNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESAS 252 (699)
Q Consensus 193 -~~~V~~l~~e~~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~s 252 (699)
++.+++|+.+++++|.||... +|. .|.|+.||+|||+|... +. ....+.+..|+...
T Consensus 206 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~--~~-~tt~~~~~tGDG~~ 268 (635)
T PLN00128 206 VEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA--YF-SATSAHTCTGDGNA 268 (635)
T ss_pred EeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc--cc-cccCCCCCCCHHHH
Confidence 699999887645789998763 454 68899999999999642 21 23444555666533
No 22
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.57 E-value=8e-14 Score=160.03 Aligned_cols=171 Identities=29% Similarity=0.316 Sum_probs=97.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--------chhhHHHHhhcCcc----
Q 048823 74 IDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--------SQLVHEVDALGGEI---- 141 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~~l~~el~~lg~~~---- 141 (699)
++.++||||||+|.||++||+.+++.|.+|+||||.....+ .+..+.||++. ...++++...+...
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~ 90 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG--STRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPD 90 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC--chhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHH
Confidence 45679999999999999999999999999999999632111 11122233211 11222222222110
Q ss_pred --chhhchhhhhHHhhcc--------CCCc-------cccccc-----cccCHHHHHHHHHHHHHccCCeEEE-eeEEEE
Q 048823 142 --GKVADMCYLQKRVLNT--------SRGP-------AVWALR-----AQTDKREYAMRMKNIVESTANLCIR-EAMVTD 198 (699)
Q Consensus 142 --~~~~d~~~i~~~~~~~--------s~g~-------~~~~~r-----~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~ 198 (699)
..+.+...-...|+.. ..|. .....+ .......+...|.+.+++. +++++ ++.|++
T Consensus 91 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~-gV~i~~~~~v~~ 169 (541)
T PRK07804 91 AVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRAD-PLDIREHALALD 169 (541)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhC-CCEEEECeEeee
Confidence 0111111111111100 0000 000001 1123567888898888887 68887 699999
Q ss_pred EEecCCCCEEEEEEc-------Cc-cEEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 199 ILLGKNDNVEGVCTF-------FG-MNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 199 l~~e~~g~v~gV~t~-------dG-~~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
|..+++++|+||.+. ++ ..+.|+.||+|||+++... .....+.+..|+.
T Consensus 170 Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~---~~~~~~~~~tGdG 226 (541)
T PRK07804 170 LLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLY---AATTNPAGSTGDG 226 (541)
T ss_pred eEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCC---CCccCCCCcchHH
Confidence 987634689998764 22 3689999999999986422 1233444555544
No 23
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.57 E-value=3e-13 Score=156.63 Aligned_cols=171 Identities=21% Similarity=0.189 Sum_probs=95.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc-----------chhhHHHHhhcCcc----
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK-----------SQLVHEVDALGGEI---- 141 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~-----------~~l~~el~~lg~~~---- 141 (699)
.+||||||+|.||++||+.+++.|++|+||||.... ...+..+.|+++. ...+.+....+...
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~--~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 80 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK--RSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQP 80 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC--CCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHH
Confidence 479999999999999999999999999999986221 1112222233211 01111111111110
Q ss_pred --chhhchhhhhHHhhcc--------CCCc-------ccccccc----ccCHHHHHHHHHHHHHccC---CeEEE-eeEE
Q 048823 142 --GKVADMCYLQKRVLNT--------SRGP-------AVWALRA----QTDKREYAMRMKNIVESTA---NLCIR-EAMV 196 (699)
Q Consensus 142 --~~~~d~~~i~~~~~~~--------s~g~-------~~~~~r~----~~d~~~~~~~L~~~l~~~~---gv~i~-~~~V 196 (699)
..+.+...-...++.. ..|. .....|. ......+...|.+.+.+.+ ++.++ ++.+
T Consensus 81 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~ 160 (589)
T PRK08641 81 PVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEF 160 (589)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEE
Confidence 0011111101111100 0000 0000011 1235567778887776542 37776 6899
Q ss_pred EEEEecCCCCEEEEEEcC---cc--EEecCeEEEecCCCCCCceeecccccCCCCcccccc
Q 048823 197 TDILLGKNDNVEGVCTFF---GM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESAS 252 (699)
Q Consensus 197 ~~l~~e~~g~v~gV~t~d---G~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~s 252 (699)
++++.+++++|+||...+ |. .+.|+.||+|||+|.. ++ ...+.+.+..|+...
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~--~y-~~tt~~~~~tGdG~~ 218 (589)
T PRK08641 161 LGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI--IF-GKSTNSTINTGSAAS 218 (589)
T ss_pred EEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC--CC-CCCCCCCCCchHHHH
Confidence 999875468999998653 33 5789999999999964 22 234555666666543
No 24
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=4e-13 Score=154.58 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=87.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCC-CCCCcc--------chhhHHHHhhcCcc-----
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPA-VGGPAK--------SQLVHEVDALGGEI----- 141 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s-~Gg~~~--------~~l~~el~~lg~~~----- 141 (699)
.++||||||||.||++||+.+ +.|.+|+||||... +...|+.. .|+++. ...+.++...+...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~--~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~l 82 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF--GKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKL 82 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC--CCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHH
Confidence 358999999999999999999 99999999999522 22223322 222211 11122221112110
Q ss_pred -chhhchhhhhHHhhcc--------CCC------cc-cccccc----ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEE
Q 048823 142 -GKVADMCYLQKRVLNT--------SRG------PA-VWALRA----QTDKREYAMRMKNIVESTANLCIR-EAMVTDIL 200 (699)
Q Consensus 142 -~~~~d~~~i~~~~~~~--------s~g------~~-~~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~ 200 (699)
..+.+...-...|+.. ..| .. ...++. ......+...|.+.+.+ .+++++ ++.|++|.
T Consensus 83 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~t~v~~Li 161 (543)
T PRK06263 83 VEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIK-ERIKILEEVMAIKLI 161 (543)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhc-CCCEEEeCeEeeeeE
Confidence 1111111111112110 000 00 000110 11245677788888877 489987 69999998
Q ss_pred ecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCC
Q 048823 201 LGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 201 ~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
.+++++++||.. .+|. .+.|+.||+|||++..
T Consensus 162 ~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 162 VDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred EeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 763334999864 3554 6899999999999964
No 25
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.56 E-value=1.5e-13 Score=158.58 Aligned_cols=168 Identities=21% Similarity=0.194 Sum_probs=95.4
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCceeEEeeecccccCCCCCCCCCCCc--------cchhhHHHHhhcCcc-----
Q 048823 77 RFDVIVVGGGHAGCEAALASARL--GAKTLLLTLNIDKIAWQPCNPAVGGPA--------KSQLVHEVDALGGEI----- 141 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~~~~~g~~~c~~s~Gg~~--------~~~l~~el~~lg~~~----- 141 (699)
++||+|||||.||+.||+.+++. |.+|+||||....-+ .+..+.|+++ ...+..+....|...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~--~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~l 80 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS--HTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDV 80 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--CchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHH
Confidence 58999999999999999999987 589999999622111 1111223221 011122221112111
Q ss_pred -chhhchhhhhHHhhcc--------CCC-------cccccccc----ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEE
Q 048823 142 -GKVADMCYLQKRVLNT--------SRG-------PAVWALRA----QTDKREYAMRMKNIVESTANLCIR-EAMVTDIL 200 (699)
Q Consensus 142 -~~~~d~~~i~~~~~~~--------s~g-------~~~~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~ 200 (699)
..+.+...-...++.. ..| ......|. ......+...|.+.+.+.+++.++ ++.|++|+
T Consensus 81 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 160 (580)
T TIGR01176 81 VEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLL 160 (580)
T ss_pred HHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEE
Confidence 0111111111111100 000 00000010 113567888888888776789987 59999999
Q ss_pred ecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 201 LGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 201 ~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
.+ +++|.||.. .+|. .+.|+.||+|||+++.. + ...+.+.+..|+.
T Consensus 161 ~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~--~-~~~t~~~~~tGdG 211 (580)
T TIGR01176 161 VD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV--Y-PFNTNGGIVTGDG 211 (580)
T ss_pred ee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc--c-cCCCCCCCcCcHH
Confidence 86 789999874 3563 68899999999998642 1 2233444555554
No 26
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=5.6e-13 Score=155.37 Aligned_cols=154 Identities=23% Similarity=0.231 Sum_probs=87.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc-----------chhhHHHHhhcCccc--
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK-----------SQLVHEVDALGGEIG-- 142 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~-----------~~l~~el~~lg~~~~-- 142 (699)
.++||||||||.||++||+.|++.|++|+|||+... +...+..+.||+.. .....+....+....
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~--~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~ 84 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF--GKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNW 84 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC--CCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcH
Confidence 358999999999999999999999999999999621 11111112222210 011111111111100
Q ss_pred ----hhhchhhhhHHhhcc--------CCC-------cccccccc----ccCHHHHHHHHHHHHHccC-------C----
Q 048823 143 ----KVADMCYLQKRVLNT--------SRG-------PAVWALRA----QTDKREYAMRMKNIVESTA-------N---- 188 (699)
Q Consensus 143 ----~~~d~~~i~~~~~~~--------s~g-------~~~~~~r~----~~d~~~~~~~L~~~l~~~~-------g---- 188 (699)
.+.+...-...++.. ..+ .....+|. ......+...|.+.+.+.+ |
T Consensus 85 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~ 164 (626)
T PRK07803 85 RMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEA 164 (626)
T ss_pred HHHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcC
Confidence 011111111111110 000 00001111 1134567778888777652 3
Q ss_pred -eEEE-eeEEEEEEecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCC
Q 048823 189 -LCIR-EAMVTDILLGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 189 -v~i~-~~~V~~l~~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
++++ ++.|++|..+ ++++.||.. .+|. .|.|+.||+|||++..
T Consensus 165 ~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence 8887 6999999876 688988864 3454 6899999999999854
No 27
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.55 E-value=2.2e-13 Score=146.10 Aligned_cols=242 Identities=23% Similarity=0.247 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCCCceeecccccCCCCccccc
Q 048823 173 REYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESA 251 (699)
Q Consensus 173 ~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~ 251 (699)
......+++.+++. |++++ +++|.+++.+ ++.+.+|.+.+|.+|.+|.||+|.|.-.
T Consensus 173 ~~vvkni~~~l~~~-G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg-------------------- 230 (486)
T COG2509 173 PKVVKNIREYLESL-GGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSG-------------------- 230 (486)
T ss_pred HHHHHHHHHHHHhc-CcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcch--------------------
Confidence 46778899999998 67775 8999999987 6778999999999999999999999752
Q ss_pred chhHHHHHHHcCCcccccccCcccccCCcccccccccccCCC-----------CCccccccCCC---------c------
Q 048823 252 SHGLTENLQRLGFETDRLKTGTPSRVDLRTVDFSGLEPQHGD-----------EEVSWFSFDPD---------F------ 305 (699)
Q Consensus 252 s~~L~~~L~~~G~~~~r~ktgtppr~~~~sid~~~~~~q~~d-----------~~~~~fs~~~~---------~------ 305 (699)
+..+....+++|+.+..-......|+......++......-+ .....|+.... .
T Consensus 231 ~dw~~~l~~K~Gv~~~~~p~dIGVRvE~p~~vmd~~~~~~~~~k~~~~t~k~~~~VrtFCmcP~G~VV~e~~e~g~~~vN 310 (486)
T COG2509 231 RDWFEMLHKKLGVKMRAKPFDIGVRVEHPQSVMDPHTRLGAAPKFLYYTKKYGDGVRTFCMCPGGEVVAENYEDGFVVVN 310 (486)
T ss_pred HHHHHHHHHhcCcccccCCeeEEEEEecchHhhCccccccccceeEEEeccCCCeEEEEEECCCCeEEeeeccCceEEEc
Confidence 456666667777754222112223443333333322111111 11111111000 0
Q ss_pred -----cCCccceeeeccCCC------hhHHHH---HHhcc----ccCCCCCCccc-CCCCe----------eeeccccc-
Q 048823 306 -----HIEREQMCCYLTRTT------KRTHQL---IKDNL----HETPTYGGWVE-AKGPR----------YCPAIEDK- 355 (699)
Q Consensus 306 -----~~~~~~~~~~~~~t~------~~~~~i---i~~~~----~~s~~~~g~i~-~~g~r----------yc~siEdk- 355 (699)
....++.+.-+-.+. ..+-++ +++.- -..+...-..| ..|.| .-|++.+.
T Consensus 311 G~S~~~r~s~NtNfAllV~i~~tep~~~~~ey~r~ia~lA~~lgGg~~i~Q~~gDf~~gRrSt~~ri~~~~v~PTlk~v~ 390 (486)
T COG2509 311 GHSYYARKSENTNFALLVTIEFTEPFEDGIEYGRSIARLATTLGGGKAIIQRVGDFLKGRRSTWSRIGRVFVEPTLKPVT 390 (486)
T ss_pred ccchhcccccCcceEEEEeccccCCCCchHHHHHHHHHHHHHhcCCcchHHHhhHHHcCCcChHHHhhcccccccccccc
Confidence 000111121111100 111111 11100 00011110000 01111 12444432
Q ss_pred --CCCCCCCHHHHHHHHhcccCCcCCcccccc--------ccccCCCcCcc-ccCcccccCCCCCEEEecccCCC-chHH
Q 048823 356 --GFSTGLPERLQLPLLRTLPGLENCSMLRPA--------YAVEYDYLPAH-QCYRSLMTKKVEGLFFSGQINGT-TGYE 423 (699)
Q Consensus 356 --G~~tslp~~~q~~~lr~ipgLe~a~i~r~g--------y~~eyd~i~p~-~l~~~letk~i~gLf~AGqi~G~-~Gy~ 423 (699)
.++..||..+...++..++.|.+.- || |++|..|...+ ..+..+++. ++|||.|||..|. .|..
T Consensus 391 pgDls~~lP~~v~~~iiE~le~ldk~i---pG~as~dtlLygvE~k~ys~ri~~d~~~~t~-i~gLy~aGdGAG~argI~ 466 (486)
T COG2509 391 PGDLSLALPDRVVEDLIEALENLDKVI---PGVASDDTLLYGVETKFYSVRIKVDEDLSTS-IKGLYPAGDGAGLARGIV 466 (486)
T ss_pred cCchhhhCCHHHHHHHHHHHHHhhccC---CCcccccceeeeeeeeeeeeeEeecccceee-ecceEEccccccccchhH
Confidence 5778899999988887777776553 44 57888888743 467777774 9999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048823 424 EAAAQGIISGINAARHS 440 (699)
Q Consensus 424 eA~a~G~~Ag~naa~~~ 440 (699)
.|+++|++||..++++.
T Consensus 467 ~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 467 SAAADGIKAAEGIARKY 483 (486)
T ss_pred HHhhhhHHHHHHHHHHh
Confidence 99999999999998864
No 28
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.55 E-value=1.6e-13 Score=155.87 Aligned_cols=152 Identities=28% Similarity=0.251 Sum_probs=89.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--------chhhHHHHhhcCcc------c
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--------SQLVHEVDALGGEI------G 142 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~~l~~el~~lg~~~------~ 142 (699)
++||||||||.||+.||+.+++.|. |+||||.....+ .+..+.|++.. ...+++....+... .
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g--~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~ 78 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG--NSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVE 78 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC--cchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHH
Confidence 4899999999999999999999998 999999622111 11122233211 11122211111110 0
Q ss_pred hhhchhhhhHHhhcc--------CCCc-------cccccc----cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEec
Q 048823 143 KVADMCYLQKRVLNT--------SRGP-------AVWALR----AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLG 202 (699)
Q Consensus 143 ~~~d~~~i~~~~~~~--------s~g~-------~~~~~r----~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e 202 (699)
.+.+...-...|+.. ..|. ....++ ...+...+...|.+.+++.++++++ ++.|++|..+
T Consensus 79 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~ 158 (488)
T TIGR00551 79 FVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE 158 (488)
T ss_pred HHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc
Confidence 111111111111100 0000 000011 1224567888899988876689987 5999999876
Q ss_pred CCCCEEEEEEcC-c--cEEecCeEEEecCCCCC
Q 048823 203 KNDNVEGVCTFF-G--MNFYAPSVVLTTGTFMS 232 (699)
Q Consensus 203 ~~g~v~gV~t~d-G--~~i~Ad~VVlAtG~~~~ 232 (699)
++++.||.+.+ + ..+.|+.||+|||+++.
T Consensus 159 -~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 159 -TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred -CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 67888887654 3 36899999999999975
No 29
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.55 E-value=5.5e-13 Score=154.94 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=88.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCceeEEeeecccccCC------CCCCCCCCC-ccchhhHHHHhhcCcc-----
Q 048823 76 ERFDVIVVGGGHAGCEAALASARL--GAKTLLLTLNIDKIAWQ------PCNPAVGGP-AKSQLVHEVDALGGEI----- 141 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~~~~~g~~------~c~~s~Gg~-~~~~l~~el~~lg~~~----- 141 (699)
.++||||||||.||++||+.|++. |.+|+||||.....+.. .++...+-. ......+++...+...
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 358999999999999999999998 99999999962211100 011101000 0111222222111110
Q ss_pred -chhhchhhhhHHhhcc--------CCCccccc--cccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEE
Q 048823 142 -GKVADMCYLQKRVLNT--------SRGPAVWA--LRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEG 209 (699)
Q Consensus 142 -~~~~d~~~i~~~~~~~--------s~g~~~~~--~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~g 209 (699)
..+.+...-...++.. ..|..... .+...+...+...|.+.+++.++++++ ++.|++|..+ +++++|
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~G 168 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAG 168 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEE
Confidence 0011111111111110 00110000 001235667888888888877669987 6999999876 678888
Q ss_pred EEE---cCcc--EEecCeEEEecCCCCC
Q 048823 210 VCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 210 V~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
|.. .+|+ .+.|+.||+|||++..
T Consensus 169 v~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 169 AVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEEccCCcEEEEECCEEEECCCchhh
Confidence 853 3453 6899999999999853
No 30
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.55 E-value=2.8e-13 Score=156.91 Aligned_cols=76 Identities=22% Similarity=0.177 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCC---CCEEEEEE---cCcc--EEecCeEEEecCCCCCCceeecccc
Q 048823 171 DKREYAMRMKNIVESTANLCIR-EAMVTDILLGKN---DNVEGVCT---FFGM--NFYAPSVVLTTGTFMSGKIWVGRTS 241 (699)
Q Consensus 171 d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~---g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~ 241 (699)
....+...|.+.+.+. |++++ ++.|++|+.+++ ++|+||.. .+|. .|.|+.||+|||++... + ....
T Consensus 138 tG~~i~~~L~~~~~~~-gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~--~-~~~~ 213 (583)
T PRK08205 138 TGHMILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV--Y-KTTS 213 (583)
T ss_pred CHHHHHHHHHHHHHhc-CCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc--C-CCcC
Confidence 3467788888888775 89987 699999987632 78999875 3454 68899999999998642 1 1233
Q ss_pred cCCCCcccc
Q 048823 242 MPAGRAGES 250 (699)
Q Consensus 242 ~~~gr~g~~ 250 (699)
.+.+..|+.
T Consensus 214 ~~~~~tGdG 222 (583)
T PRK08205 214 NAHTLTGDG 222 (583)
T ss_pred CCCCCCcHH
Confidence 444555554
No 31
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.55 E-value=2.2e-13 Score=157.72 Aligned_cols=170 Identities=22% Similarity=0.213 Sum_probs=94.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc----------chhhHHHHhhcCc-----
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK----------SQLVHEVDALGGE----- 140 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~----------~~l~~el~~lg~~----- 140 (699)
.++||||||||.||++||+.+++.|.+|+||||.... ...+..+.||++. ..+..+....+..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~--~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~ 83 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT--RSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQD 83 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC--CCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 3589999999999999999999999999999996221 1112222233210 0111111111111
Q ss_pred -cchhh----------chhhhhHHhh------ccCCC-ccc-----ccccc----ccCHHHHHHHHHHHHHccCCeEEE-
Q 048823 141 -IGKVA----------DMCYLQKRVL------NTSRG-PAV-----WALRA----QTDKREYAMRMKNIVESTANLCIR- 192 (699)
Q Consensus 141 -~~~~~----------d~~~i~~~~~------~~s~g-~~~-----~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~- 192 (699)
...+. +..++.|.-. ....+ ... ...|. ......+...|.+.+.+. +++++
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gi~i~~ 162 (588)
T PRK08958 84 AIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFS 162 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhc-CCEEEe
Confidence 00011 1111222100 00000 000 00010 113456778888877764 88887
Q ss_pred eeEEEEEEecCCCCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecccccCCCCccccc
Q 048823 193 EAMVTDILLGKNDNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESA 251 (699)
Q Consensus 193 ~~~V~~l~~e~~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~ 251 (699)
++.|++|+.+++++|+||... +|. .|.|+.||+|||++.. ++. ....+.+..|+..
T Consensus 163 ~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~--~~~-~~~~~~~~tGdG~ 223 (588)
T PRK08958 163 EWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR--IYQ-STTNAHINTGDGV 223 (588)
T ss_pred CcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc--ccc-cccCCCCCCcHHH
Confidence 699999987546899999752 554 6789999999999964 221 2333445555543
No 32
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.55 E-value=3e-13 Score=156.50 Aligned_cols=150 Identities=23% Similarity=0.243 Sum_probs=86.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc-------ch----hhHHHHhhcCcc------
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK-------SQ----LVHEVDALGGEI------ 141 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~-------~~----l~~el~~lg~~~------ 141 (699)
||||||||.||++||+.|++.|++|+||||.....+ .+..+.|++.. .. ...+....+...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g--~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v 78 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS--HTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAV 78 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--cchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHH
Confidence 899999999999999999999999999999622111 11112222210 00 111111111110
Q ss_pred chhhchhhhhHHhhcc--------CCC-----c-c-ccccc----cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEe
Q 048823 142 GKVADMCYLQKRVLNT--------SRG-----P-A-VWALR----AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILL 201 (699)
Q Consensus 142 ~~~~d~~~i~~~~~~~--------s~g-----~-~-~~~~r----~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~ 201 (699)
..+.+...-...|+.. ..+ + . ....+ .......+...|.+.+.+. |++++ ++.|++|..
T Consensus 79 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~~v~~L~~ 157 (566)
T TIGR01812 79 EYMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKL-GVSFFNEYFALDLIH 157 (566)
T ss_pred HHHHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHc-CCEEEeccEEEEEEE
Confidence 0111111111111110 000 0 0 00001 0113446777888888776 88887 699999988
Q ss_pred cCCCCEEEEEE---cCcc--EEecCeEEEecCCCCC
Q 048823 202 GKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 202 e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
+ ++++.||.. .+|. .+.|+.||+|||+++.
T Consensus 158 ~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 158 D-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred e-CCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 6 688999875 3554 6899999999999964
No 33
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.54 E-value=2.5e-13 Score=154.78 Aligned_cols=172 Identities=27% Similarity=0.318 Sum_probs=98.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeeccccc-----CCCCCCCCCCC------ccc---------------
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIA-----WQPCNPAVGGP------AKS--------------- 128 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g-----~~~c~~s~Gg~------~~~--------------- 128 (699)
..+|||||||||.|||.||+.++..|.+|+|+||....-+ ...+|...+.. ...
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 3569999999999999999999999999999999622111 11111111100 000
Q ss_pred ------------hhhHHHHhhcCccchhhchhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeE
Q 048823 129 ------------QLVHEVDALGGEIGKVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAM 195 (699)
Q Consensus 129 ------------~l~~el~~lg~~~~~~~d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~ 195 (699)
..+.+++.+|..+.+..+..-.+.++...+.....+. +......+...|.+.+.+..+++++ +..
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~--~~~tG~~ll~~L~~~~~~~~~~~~~~~~~ 161 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFA--ADKTGHELLHTLYEQLLKFSGIEIFDEYF 161 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceec--CCCCcHHHHHHHHHHHHHhhcchhhhhhh
Confidence 1122333333333332222111111212221111110 1123456778888888886677777 589
Q ss_pred EEEEEecCCCCEEEEE---EcCcc--EEecCeEEEecCCCCCCceeecccccCCCCccccc
Q 048823 196 VTDILLGKNDNVEGVC---TFFGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESA 251 (699)
Q Consensus 196 V~~l~~e~~g~v~gV~---t~dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~ 251 (699)
++++..++++.+.||. ..+|+ .++++.||+|||++. +.....+......|+..
T Consensus 162 ~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g---~~~~~~t~~~~~tGdG~ 219 (562)
T COG1053 162 VLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG---RLYPYTTNAHIGTGDGV 219 (562)
T ss_pred hhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce---EEEeccCCccccCCcHH
Confidence 9999877444477776 34554 678999999999984 33344444444455543
No 34
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.54 E-value=7.7e-13 Score=150.85 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=91.0
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc---------------chhhHHHHhh
Q 048823 73 NIDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK---------------SQLVHEVDAL 137 (699)
Q Consensus 73 ~~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~---------------~~l~~el~~l 137 (699)
.++.++||||||||.+|++||+.+++.|.+|+|||+... .+. .+..+.|+... ..+.+++...
T Consensus 57 ~~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~-~GG-~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~ 134 (506)
T PRK06481 57 ELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV-AGG-NTMKASSGMNASETKFQKAQGIADSNDKFYEETLKG 134 (506)
T ss_pred cccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC-CCC-cccccCCccccCChHHHHhcCCCCCHHHHHHHHHHh
Confidence 345689999999999999999999999999999999632 111 11111222210 1122222111
Q ss_pred cCc------cchhhchhhhhHHhhcc----------CCCc---ccccc-ccccCHHHHHHHHHHHHHccCCeEEE-eeEE
Q 048823 138 GGE------IGKVADMCYLQKRVLNT----------SRGP---AVWAL-RAQTDKREYAMRMKNIVESTANLCIR-EAMV 196 (699)
Q Consensus 138 g~~------~~~~~d~~~i~~~~~~~----------s~g~---~~~~~-r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V 196 (699)
+.. ...+.+.......|+.. ..+. ..+.+ ........+...|.+.+++. +++++ ++.|
T Consensus 135 ~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~-gv~i~~~t~v 213 (506)
T PRK06481 135 GGGTNDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVNADV 213 (506)
T ss_pred cCCCCCHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHc-CCeEEeCCee
Confidence 110 00111111111222211 0010 00111 01123345778888888876 78886 6999
Q ss_pred EEEEecCCCCEEEEEEc--Ccc--EEecCeEEEecCCCCCC
Q 048823 197 TDILLGKNDNVEGVCTF--FGM--NFYAPSVVLTTGTFMSG 233 (699)
Q Consensus 197 ~~l~~e~~g~v~gV~t~--dG~--~i~Ad~VVlAtG~~~~~ 233 (699)
++|..+ ++++.||.+. +|. ++.|+.||+|||+|..+
T Consensus 214 ~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 214 TKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred EEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 999865 6888888763 332 68999999999999765
No 35
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.53 E-value=3e-13 Score=151.19 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=86.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCC--CCCCCc-------cchhhHHHHhhcCc------
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNP--AVGGPA-------KSQLVHEVDALGGE------ 140 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~--s~Gg~~-------~~~l~~el~~lg~~------ 140 (699)
.++||||||+|.||++||+.++ .|.+|+||||.... .|+. +.|++. ...++++....+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~----gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~l 77 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN----ECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEA 77 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC----CCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 4589999999999999999985 79999999996221 1111 122221 01111111111111
Q ss_pred cchhhchhhhhHHhhcc---------------CCCccccccc----cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEE
Q 048823 141 IGKVADMCYLQKRVLNT---------------SRGPAVWALR----AQTDKREYAMRMKNIVESTANLCIR-EAMVTDIL 200 (699)
Q Consensus 141 ~~~~~d~~~i~~~~~~~---------------s~g~~~~~~r----~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~ 200 (699)
...+.+...-...|+.. ..+ .....| .......+...|.+.+.+..|++++ ++.|++|.
T Consensus 78 v~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g-~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li 156 (433)
T PRK06175 78 VKILANESIENINKLIDMGLNFDKDEKELSYTKEG-AHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDII 156 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCceeeeccC-ccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeE
Confidence 00111111111111100 000 000001 1123456778888888765689987 69999998
Q ss_pred ecCCCCEEEEE-EcCcc--EEecCeEEEecCCCCC
Q 048823 201 LGKNDNVEGVC-TFFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 201 ~e~~g~v~gV~-t~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
.+ +++++||. +.++. .+.|+.||+|||++..
T Consensus 157 ~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 157 EN-DNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred ec-CCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 76 67888876 33454 6899999999999854
No 36
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.52 E-value=6e-13 Score=150.26 Aligned_cols=150 Identities=19% Similarity=0.142 Sum_probs=88.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--------chhhHH-HHhhcCc-----cch
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--------SQLVHE-VDALGGE-----IGK 143 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~~l~~e-l~~lg~~-----~~~ 143 (699)
+||||||||.||++||+.|++.|.+|+|||+... .+ ......||+.. .....+ +..-.+. ...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~-~~--~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 78 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK-KS--NSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWN 78 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC-CC--CcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 6999999999999999999999999999999621 11 11112233311 011111 1111111 001
Q ss_pred hhchhhhhHHhhcc-----C---CCccccccc----cccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEE
Q 048823 144 VADMCYLQKRVLNT-----S---RGPAVWALR----AQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVC 211 (699)
Q Consensus 144 ~~d~~~i~~~~~~~-----s---~g~~~~~~r----~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~ 211 (699)
+.+...-...|+.. . .......++ .......+...|.+.+++. +++++...++++..+ +++++||.
T Consensus 79 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~v~~l~~~-~g~v~Gv~ 156 (466)
T PRK08401 79 VISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHAREL-GVNFIRGFAEELAIK-NGKAYGVF 156 (466)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhc-CCEEEEeEeEEEEee-CCEEEEEE
Confidence 11111111122110 0 000000111 0123456888888888875 888887789888765 68888888
Q ss_pred EcCccEEecCeEEEecCCCCCC
Q 048823 212 TFFGMNFYAPSVVLTTGTFMSG 233 (699)
Q Consensus 212 t~dG~~i~Ad~VVlAtG~~~~~ 233 (699)
+ +|..+.|+.||+|||+|+..
T Consensus 157 ~-~g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 157 L-DGELLKFDATVIATGGFSGL 177 (466)
T ss_pred E-CCEEEEeCeEEECCCcCcCC
Confidence 7 45589999999999999754
No 37
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.52 E-value=3.6e-13 Score=157.46 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecccccCCCC
Q 048823 173 REYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGR 246 (699)
Q Consensus 173 ~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr 246 (699)
..+...|.+.+.+. |+.++ ++.|++|+.+ +++|.||... +|+ .|.|+.||+|||+|... + ...+.+.+.
T Consensus 158 ~~l~~~L~~~~~~~-gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~--y-~~ttn~~~~ 232 (657)
T PRK08626 158 HTMLYAVDNEAIKL-GVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI--Y-KVTTNAVIC 232 (657)
T ss_pred HHHHHHHHHHHHhC-CCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC--C-CCCCCCCCc
Confidence 44566777777765 89987 6999999976 6889998764 464 56899999999999642 2 224445555
Q ss_pred cccccc
Q 048823 247 AGESAS 252 (699)
Q Consensus 247 ~g~~~s 252 (699)
.|+..+
T Consensus 233 tGdG~~ 238 (657)
T PRK08626 233 EGIGAA 238 (657)
T ss_pred ChHHHH
Confidence 565533
No 38
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.52 E-value=5.9e-13 Score=152.77 Aligned_cols=170 Identities=19% Similarity=0.181 Sum_probs=94.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--------chhhHHHHhhcCcc-----
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--------SQLVHEVDALGGEI----- 141 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~~l~~el~~lg~~~----- 141 (699)
+.++||||||+|.||++||+.|++. .+|+||||.....+ .+..+.|+++. ...+++....+...
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g--~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 82 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG--STFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDA 82 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC--ChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHH
Confidence 3468999999999999999999986 89999999622111 11122233210 11112221111110
Q ss_pred -c----------hhhchhhhhHHhhccCCC--------ccccc-cc----cccCHHHHHHHHHHHHHccCCeEEE-eeEE
Q 048823 142 -G----------KVADMCYLQKRVLNTSRG--------PAVWA-LR----AQTDKREYAMRMKNIVESTANLCIR-EAMV 196 (699)
Q Consensus 142 -~----------~~~d~~~i~~~~~~~s~g--------~~~~~-~r----~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V 196 (699)
. .+....++.|.......+ ...+. .| .......+...|.+.+.+.++++++ ++.|
T Consensus 83 v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v 162 (536)
T PRK09077 83 VRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNA 162 (536)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEe
Confidence 0 011111222211000000 00000 00 0113456778888888877899998 6899
Q ss_pred EEEEecC-----CCCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 197 TDILLGK-----NDNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 197 ~~l~~e~-----~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
++++.++ +++++||... +|. .+.|+.||+|||++..... ....+.+..|+.
T Consensus 163 ~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~---~~~~~~~~tGdG 223 (536)
T PRK09077 163 IDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL---YTTNPDIASGDG 223 (536)
T ss_pred eeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC---CCcCCCCCCcHH
Confidence 9998652 2789998763 354 6889999999999964221 223344555554
No 39
>PRK08275 putative oxidoreductase; Provisional
Probab=99.50 E-value=1.3e-11 Score=142.46 Aligned_cols=155 Identities=20% Similarity=0.236 Sum_probs=87.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCceeEEeeecccccCCCCCCCCCCCc---------cchhhHHHHhhcCc----
Q 048823 76 ERFDVIVVGGGHAGCEAALASARL--GAKTLLLTLNIDKIAWQPCNPAVGGPA---------KSQLVHEVDALGGE---- 140 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~~~~~g~~~c~~s~Gg~~---------~~~l~~el~~lg~~---- 140 (699)
.++||||||||.||++||+.+++. |.+|+||||.....+...| ...+++. ....+.++...+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~-~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAIS-MGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchh-hhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 458999999999999999999987 7899999996321111101 1111111 11111111111111
Q ss_pred --cchhhchhhhhHHhhcc--------CCCcc----cccccc----ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEe
Q 048823 141 --IGKVADMCYLQKRVLNT--------SRGPA----VWALRA----QTDKREYAMRMKNIVESTANLCIR-EAMVTDILL 201 (699)
Q Consensus 141 --~~~~~d~~~i~~~~~~~--------s~g~~----~~~~r~----~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~ 201 (699)
...+.+...-...++.. ..+.. .+.... ......+...|.+.+.+. +++++ ++.|++|..
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~~v~~Li~ 165 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRA-RVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHC-CCEEEcceEEEEEEE
Confidence 00111111111111110 00100 000000 012346778888888775 89987 699999987
Q ss_pred cCCCCEEEEEE---cCcc--EEecCeEEEecCCCCC
Q 048823 202 GKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 202 e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
++++++.||.. .+|. .+.|+.||+|||++..
T Consensus 166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 53578999874 3554 5889999999999853
No 40
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.50 E-value=1.6e-12 Score=141.15 Aligned_cols=168 Identities=26% Similarity=0.328 Sum_probs=103.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccc---------hhhHHHHhhcCccch-----h
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKS---------QLVHEVDALGGEIGK-----V 144 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~---------~l~~el~~lg~~~~~-----~ 144 (699)
||+|||+|.|||++|+.|++. .+|+||.|+ ..+..+...+.||++.. ++...+.+=.+.... +
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~--~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~i 85 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKG--PLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFI 85 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCC--CCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 899999999999999999998 999999995 22222223455666421 111112111111100 0
Q ss_pred hchhhhhHHhh---------------------ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEec
Q 048823 145 ADMCYLQKRVL---------------------NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIRE-AMVTDILLG 202 (699)
Q Consensus 145 ~d~~~i~~~~~---------------------~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e 202 (699)
.........++ .+++...++. +......++..|.+.+++.|+|++++ +.+.+|..+
T Consensus 86 v~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~--~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~ 163 (518)
T COG0029 86 VSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHA--ADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE 163 (518)
T ss_pred HHhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEe--cCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc
Confidence 00000000111 0111111111 12456788999999999999999996 799999887
Q ss_pred CCC-CEEEEEEcCc----cEEecCeEEEecCCCCCCceeecccccCCCCcccccchhH
Q 048823 203 KND-NVEGVCTFFG----MNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASHGL 255 (699)
Q Consensus 203 ~~g-~v~gV~t~dG----~~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~~s~~L 255 (699)
++ .+.||.+.+. ..|.|+.||+|||+.. .+| ..+++|.+..|+..+..+
T Consensus 164 -~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g--~ly-~~TTNp~~~~GdGIamA~ 217 (518)
T COG0029 164 -DGIGVAGVLVLNRNGELGTFRAKAVVLATGGLG--GLY-AYTTNPKGSTGDGIAMAW 217 (518)
T ss_pred -CCceEeEEEEecCCCeEEEEecCeEEEecCCCc--ccc-cccCCCccccccHHHHHH
Confidence 55 5559887533 4789999999999973 233 357778888888755443
No 41
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.50 E-value=1.6e-12 Score=150.78 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecccccCCC
Q 048823 172 KREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAG 245 (699)
Q Consensus 172 ~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~g 245 (699)
...+...|.+.+.+. +++++ ++.+++|+.+++++|.||... +|. .+.|+.||+|||++... + ...+.+.+
T Consensus 147 G~~l~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~--~-~~~t~~~~ 222 (591)
T PRK07057 147 GHALLHTLYQQNVAA-KTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI--F-AASTNAFI 222 (591)
T ss_pred hHHHHHHHHHHHHhc-CCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc--c-CCcCCCCC
Confidence 356778888877764 88887 699999987645789998763 454 67899999999998642 2 12233445
Q ss_pred Ccccc
Q 048823 246 RAGES 250 (699)
Q Consensus 246 r~g~~ 250 (699)
..|+.
T Consensus 223 ~tGdG 227 (591)
T PRK07057 223 NTGDG 227 (591)
T ss_pred cCcHH
Confidence 55554
No 42
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.50 E-value=3.5e-13 Score=153.83 Aligned_cols=166 Identities=23% Similarity=0.200 Sum_probs=92.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--------chhhHHHHhhcCcc------
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--------SQLVHEVDALGGEI------ 141 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~~l~~el~~lg~~~------ 141 (699)
.++||||||+|.||++||+.++ |.+|+||||.....+ .++..+.|+++. ...+.+....+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~g-g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v 84 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEG-ASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA 84 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCC-cchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 4689999999999999999997 679999999632111 111122333311 11122221111110
Q ss_pred chhhc----------hhhhhHHhhccCCCcc------cc-ccc-----cccCHHHHHHHHHHHHHccCCeEEE-eeEEEE
Q 048823 142 GKVAD----------MCYLQKRVLNTSRGPA------VW-ALR-----AQTDKREYAMRMKNIVESTANLCIR-EAMVTD 198 (699)
Q Consensus 142 ~~~~d----------~~~i~~~~~~~s~g~~------~~-~~r-----~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~ 198 (699)
..+.+ ..++.|... ..|.. .+ ..+ .......+...|.+.+.+.++++++ ++.|++
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~--~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~ 162 (513)
T PRK07512 85 ALITAEAPAAIEDLLRLGVPFDRD--ADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARR 162 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCccccC--CCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhh
Confidence 00111 112222110 00100 00 000 1123456788888888776689987 588999
Q ss_pred EEecCCCCEEEEEEcC-cc--EEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 199 ILLGKNDNVEGVCTFF-GM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 199 l~~e~~g~v~gV~t~d-G~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
|..+ +++|+||.+.+ +. .+.|+.||+|||++... + .....+.+..|+.
T Consensus 163 Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~~--~-~~~~~~~~~tGDG 213 (513)
T PRK07512 163 LLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGIGGL--Y-AVTTNPAGAFGQG 213 (513)
T ss_pred eeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCCcCC--C-CCCCCCCCCchHH
Confidence 9876 68899988653 32 68999999999998542 1 1233344555554
No 43
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.49 E-value=2.3e-13 Score=158.73 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=49.3
Q ss_pred HHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecccccCCCCcccc
Q 048823 177 MRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGES 250 (699)
Q Consensus 177 ~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~gr~g~~ 250 (699)
+.|.+.+++ .+++++ ++.|++|+.+ +++|+||.+. +|. .|.|+.||+|||+|.+. +. ..+.+.+..|+.
T Consensus 174 ~~L~~~~~~-~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~--~~-~tt~~~~~tGdG 248 (640)
T PRK07573 174 QALSRQIAA-GTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGYGNV--FY-LSTNAMGSNATA 248 (640)
T ss_pred HHHHHHHHh-cCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC--CC-CCCCCCCcCcHH
Confidence 455556665 489987 6999999886 6899999865 453 68899999999999652 21 234445555554
No 44
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.49 E-value=1.6e-12 Score=150.90 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHc---cCCeEEE-eeEEEEEEecCCCCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeeccccc
Q 048823 172 KREYAMRMKNIVES---TANLCIR-EAMVTDILLGKNDNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSM 242 (699)
Q Consensus 172 ~~~~~~~L~~~l~~---~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~ 242 (699)
...+...|.+.+.+ .++++++ ++.|++|+.+++++|+||.+. +|. .+.|+.||+|||+|.+. + ...+.
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~--~-~~~t~ 204 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV--F-GKSTN 204 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc--C-CccCC
Confidence 34455555555533 2579987 699999987645689999864 343 68899999999999653 2 22344
Q ss_pred CCCCcccc
Q 048823 243 PAGRAGES 250 (699)
Q Consensus 243 ~~gr~g~~ 250 (699)
+.+..|+.
T Consensus 205 ~~~~tGdG 212 (603)
T TIGR01811 205 AMNSNASA 212 (603)
T ss_pred CCCcCcHH
Confidence 55666665
No 45
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.48 E-value=7.6e-13 Score=150.90 Aligned_cols=148 Identities=21% Similarity=0.252 Sum_probs=86.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--------chhhHHHHhhcCcc------c
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--------SQLVHEVDALGGEI------G 142 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------~~l~~el~~lg~~~------~ 142 (699)
++||||||+|.||+.||+.+++ |.+|+|||+... ....+..+.|+++. ...+.++...+... .
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~--~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 79 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK--RNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVR 79 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC--CCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHH
Confidence 5899999999999999999987 999999999632 11122223333321 11122221111110 0
Q ss_pred hhhch----------hhhhHHhhccCCCc-------cccccc-----cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEE
Q 048823 143 KVADM----------CYLQKRVLNTSRGP-------AVWALR-----AQTDKREYAMRMKNIVESTANLCIR-EAMVTDI 199 (699)
Q Consensus 143 ~~~d~----------~~i~~~~~~~s~g~-------~~~~~r-----~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l 199 (699)
.+.+. .++.|.. ...+. .....+ .......+...|.+.+. .+++++ ++.|++|
T Consensus 80 ~~~~~s~~~i~~L~~~Gv~f~~--~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~L 155 (510)
T PRK08071 80 YLVEEGPKEIQELIENGMPFDG--DETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDL 155 (510)
T ss_pred HHHHHHHHHHHHHHHcCCcccc--CCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhhe
Confidence 01111 1121210 00000 000001 12235567788888775 389987 5999999
Q ss_pred EecCCCCEEEEEEcC--cc--EEecCeEEEecCCCCC
Q 048823 200 LLGKNDNVEGVCTFF--GM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 200 ~~e~~g~v~gV~t~d--G~--~i~Ad~VVlAtG~~~~ 232 (699)
..+ ++++.||.+.+ |+ .+.|+.||+|||++..
T Consensus 156 i~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 156 IIE-NGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred eec-CCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 876 68899988654 33 6889999999999864
No 46
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.47 E-value=4.4e-12 Score=153.74 Aligned_cols=154 Identities=23% Similarity=0.286 Sum_probs=84.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCC--CCCCc---------cchhhHHHHhhcCcc--
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPA--VGGPA---------KSQLVHEVDALGGEI-- 141 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s--~Gg~~---------~~~l~~el~~lg~~~-- 141 (699)
..++||||||||.||+.||+.+++.|.+|+||||.... .+++.. .+|+. ....+.+....+...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~---~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d 87 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVR---HSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVN 87 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccccc---CCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCC
Confidence 34699999999999999999999999999999996321 111111 11211 011112211111111
Q ss_pred ----chhhchhhhhHHhhcc--------CCCcc----cccc--c--cccCHHHHHHHHHHHHHcc---CCeEEE-eeEEE
Q 048823 142 ----GKVADMCYLQKRVLNT--------SRGPA----VWAL--R--AQTDKREYAMRMKNIVEST---ANLCIR-EAMVT 197 (699)
Q Consensus 142 ----~~~~d~~~i~~~~~~~--------s~g~~----~~~~--r--~~~d~~~~~~~L~~~l~~~---~gv~i~-~~~V~ 197 (699)
..+.+...-...++.. ..|.. .+.. . .......+...|.+.+.+. .++.++ +..++
T Consensus 88 ~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~ 167 (897)
T PRK13800 88 QRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPV 167 (897)
T ss_pred HHHHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeE
Confidence 0011111111111110 01100 0000 0 0113445666666666554 267777 47788
Q ss_pred EEEecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCC
Q 048823 198 DILLGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 198 ~l~~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
+|+.+ +|+++||.. .+|+ .|.|+.||+|||+|.+
T Consensus 168 ~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 168 RVLTE-GGRAVGAAALNTRTGEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred EEEee-CCEEEEEEEEecCCCcEEEEECCEEEECCCcccc
Confidence 88876 789999875 3564 5889999999999854
No 47
>PRK07121 hypothetical protein; Validated
Probab=99.47 E-value=2.3e-12 Score=146.63 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC-cc--EEec-CeEEEecCCCCCC
Q 048823 171 DKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF-GM--NFYA-PSVVLTTGTFMSG 233 (699)
Q Consensus 171 d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d-G~--~i~A-d~VVlAtG~~~~~ 233 (699)
+...+...|.+.+++. +++++ ++.|++|..+++++++||+..+ +. .+.| +.||+|||+|.++
T Consensus 175 ~g~~~~~~L~~~~~~~-gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N 241 (492)
T PRK07121 175 GGAMLMDPLAKRAAAL-GVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMN 241 (492)
T ss_pred chHHHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcC
Confidence 3556788888888886 78876 7999999876457899998653 32 6889 9999999999764
No 48
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.44 E-value=4.9e-13 Score=148.57 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=81.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee---cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN---IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQK 152 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~ 152 (699)
.+||+||||||++|..||+.|++.|.+|+|+|+. .++|-+.+|-|+..-....++...+.......+...+...+.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 4699999999999999999999999999999997 3445556666665444333444443332211111111101111
Q ss_pred HhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 153 RVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 153 ~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..+...+ .---......+...+++ .+|+++.+.+.-+. .+.+.|...+.++++|+.+|+|||+.
T Consensus 83 ~~~~~~k---------~~v~~~~~~~~~~l~~~-~~V~vi~G~a~f~~----~~~v~V~~~~~~~~~a~~iiIATGS~ 146 (454)
T COG1249 83 EKLLARK---------DKVVRLLTGGVEGLLKK-NGVDVIRGEARFVD----PHTVEVTGEDKETITADNIIIATGSR 146 (454)
T ss_pred HHHHHHH---------HHHHHHHhhhHHHHHhh-CCCEEEEEEEEECC----CCEEEEcCCCceEEEeCEEEEcCCCC
Confidence 1111000 00011223333344444 49999987776442 23333433334689999999999986
No 49
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.1e-13 Score=141.00 Aligned_cols=112 Identities=31% Similarity=0.359 Sum_probs=79.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCc-eeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAK-TLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~k-V~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
+.|||+||||||||++||+++++.|++ ++|+|+. ..||... ...++..+.++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-----------~~gg~~~--~~~~venypg~-------------- 54 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-----------EPGGQLT--KTTDVENYPGF-------------- 54 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-----------CcCCccc--cceeecCCCCC--------------
Confidence 469999999999999999999999999 7777752 1221110 00011111111
Q ss_pred hccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 155 LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
........+.+.+.+.+... ++++....|..+... +..+.|.+.+|. ++||.||+|||..
T Consensus 55 ------------~~~~~g~~L~~~~~~~a~~~-~~~~~~~~v~~v~~~--~~~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 55 ------------PGGILGPELMEQMKEQAEKF-GVEIVEDEVEKVELE--GGPFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred ------------ccCCchHHHHHHHHHHHhhc-CeEEEEEEEEEEeec--CceEEEEECCCe-EEEeEEEECcCCc
Confidence 11245567888888888765 888888888888754 227889999996 9999999999986
No 50
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.40 E-value=1.7e-12 Score=145.92 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=77.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
+|||+|||||+||++||+.|+++|++|+|+|++ .+.+.+..|.|+..-.....+.+++.....+-.. .....+.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~-~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWT-VGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcC-CCCCCcCHHH
Confidence 599999999999999999999999999999984 2233334444443222112222222211100000 0000000000
Q ss_pred hccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 155 LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+... ..-....+...+...+.+. +++++..+++.+.. .. ..| ..+|..+.+|.||+|||+.
T Consensus 81 ~~~~---------~~~~~~~~~~~~~~~l~~~-gV~~~~g~~~~v~~---~~-v~v-~~~g~~~~~d~lIiATGs~ 141 (446)
T TIGR01424 81 LLQK---------KDDEIARLSGLYKRLLANA-GVELLEGRARLVGP---NT-VEV-LQDGTTYTAKKILIAVGGR 141 (446)
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHhC-CcEEEEEEEEEecC---CE-EEE-ecCCeEEEcCEEEEecCCc
Confidence 0000 0001123344555666665 89998888876642 22 223 2456789999999999975
No 51
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.40 E-value=1.6e-11 Score=141.99 Aligned_cols=149 Identities=21% Similarity=0.225 Sum_probs=82.0
Q ss_pred cEEEECCChHHHHHHHHHH----HcCCceeEEeeecccccCCCCCCCCC--CCc-----------cchhhHHHHhhcCc-
Q 048823 79 DVIVVGGGHAGCEAALASA----RLGAKTLLLTLNIDKIAWQPCNPAVG--GPA-----------KSQLVHEVDALGGE- 140 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LA----r~G~kV~LlE~~~~~~g~~~c~~s~G--g~~-----------~~~l~~el~~lg~~- 140 (699)
||||||||.||+.||+.++ +.|++|+||||... +...+ .+.| +++ ....++.....+..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~--~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl 77 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL--ERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGL 77 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC--CCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCC
Confidence 8999999999999999998 67999999999622 11111 1222 111 11112221111111
Q ss_pred -----cchhhchhhhhHHhhccC---------CCcccccc--ccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecC
Q 048823 141 -----IGKVADMCYLQKRVLNTS---------RGPAVWAL--RAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGK 203 (699)
Q Consensus 141 -----~~~~~d~~~i~~~~~~~s---------~g~~~~~~--r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~ 203 (699)
...+.+...-...++..- .|...... ...+....+...+...+.+. +++++ ++.|++|+.++
T Consensus 78 ~d~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~-~~~i~~~~~v~~Ll~d~ 156 (614)
T TIGR02061 78 VREDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNA-LGDIFERIFIVKLLLDK 156 (614)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhC-CCeEEcccEEEEEEecC
Confidence 001112221122222110 11100000 00012345555566666654 56777 59999999763
Q ss_pred C--CCEEEEEE---cCcc--EEecCeEEEecCCCC
Q 048823 204 N--DNVEGVCT---FFGM--NFYAPSVVLTTGTFM 231 (699)
Q Consensus 204 ~--g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~ 231 (699)
+ |+|+||.. .+|. .+.|+.||+|||+|.
T Consensus 157 ~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 157 NTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred CCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 2 68999875 3454 688999999999994
No 52
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.38 E-value=3e-12 Score=139.12 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=50.8
Q ss_pred CCcCCccccccccccCCCcCccccCcccccCCCCCEEEecccCCC----chHH--HHHHHHHHHHHHHHHHh
Q 048823 375 GLENCSMLRPAYAVEYDYLPAHQCYRSLMTKKVEGLFFSGQINGT----TGYE--EAAAQGIISGINAARHS 440 (699)
Q Consensus 375 gLe~a~i~r~gy~~eyd~i~p~~l~~~letk~i~gLf~AGqi~G~----~Gy~--eA~a~G~~Ag~naa~~~ 440 (699)
|+++|++++.|+ +..+++++|++|.+|||||||++.++ .||+ |||++|++||.+++.++
T Consensus 311 ~~~~A~VT~GGV-------~~~EI~~~~~Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 311 PIDEAISTAGGV-------RQDALDESLMLKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred CcceEEEeCCcc-------cHHHcChhhhcccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 777888888875 46778888999999999999999887 6675 99999999999998764
No 53
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.38 E-value=6.4e-12 Score=142.37 Aligned_cols=33 Identities=39% Similarity=0.688 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
.+|||+|||||+||++||+.|++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999997
No 54
>PRK06116 glutathione reductase; Validated
Probab=99.38 E-value=2e-12 Score=145.64 Aligned_cols=138 Identities=19% Similarity=0.176 Sum_probs=73.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKR 153 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~ 153 (699)
.+|||+|||||++|++||+.|+++|++|+|+|++ .+.+.+..|-|+.--....++.+.+......++.......+.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 4699999999999999999999999999999985 22233334433321111111222221100000000000000000
Q ss_pred hhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 154 VLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 154 ~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.+... .......+...+.+.+.+. +++++..+++.+. .. .|.+ +|.++.+|.||+|||+.
T Consensus 83 ~~~~~---------~~~~~~~~~~~~~~~l~~~-gv~~~~g~~~~v~---~~---~v~~-~g~~~~~d~lViATGs~ 142 (450)
T PRK06116 83 KLIAN---------RDAYIDRLHGSYRNGLENN-GVDLIEGFARFVD---AH---TVEV-NGERYTADHILIATGGR 142 (450)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEcc---CC---EEEE-CCEEEEeCEEEEecCCC
Confidence 00000 0000112233444555554 8999887777653 22 2444 67789999999999975
No 55
>PLN02507 glutathione reductase
Probab=99.36 E-value=4e-12 Score=144.63 Aligned_cols=142 Identities=19% Similarity=0.160 Sum_probs=76.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee------------cccccCCCCCCCCCCCccchhhHHHHhhcCccc
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN------------IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIG 142 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~------------~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~ 142 (699)
..+|||+|||||++|+.||..|++.|.+|+|||+. .++|.+..|.|+..-+....+.+++.....+-.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 34699999999999999999999999999999962 122222233332211111122222211100000
Q ss_pred hhhchhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEec
Q 048823 143 KVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFYA 220 (699)
Q Consensus 143 ~~~d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~A 220 (699)
.......+.+.-+.. ..... ...+...+...+.+ .+++++..+++.+. ...+.|.+.+|+ ++.+
T Consensus 103 ~~~~~~~id~~~~~~-------~~~~~--~~~~~~~~~~~l~~-~gV~~i~g~a~~vd----~~~v~V~~~~g~~~~~~~ 168 (499)
T PLN02507 103 EINEKVDFNWKKLLQ-------KKTDE--ILRLNGIYKRLLAN-AGVKLYEGEGKIVG----PNEVEVTQLDGTKLRYTA 168 (499)
T ss_pred ccCCCCccCHHHHHH-------HHHHH--HHHHHHHHHHHHHh-CCcEEEEEEEEEec----CCEEEEEeCCCcEEEEEc
Confidence 000000000000000 00000 11122334444554 48999998888764 234556677775 5899
Q ss_pred CeEEEecCCC
Q 048823 221 PSVVLTTGTF 230 (699)
Q Consensus 221 d~VVlAtG~~ 230 (699)
|.||+|||+.
T Consensus 169 d~LIIATGs~ 178 (499)
T PLN02507 169 KHILIATGSR 178 (499)
T ss_pred CEEEEecCCC
Confidence 9999999985
No 56
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.36 E-value=4.7e-12 Score=143.29 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=74.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee---cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhh
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN---IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQ 151 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~ 151 (699)
+.+|||+|||||++|+.||..|++.|++|+|+|+. .++|.+..|-|+..-.......+.+..+.. .++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~--------~g~~ 73 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAE--------HGIV 73 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhh--------cCcc
Confidence 34699999999999999999999999999999984 222333334333211111111111111100 0000
Q ss_pred HHhhccCCCccccccccccCHHH-----------HHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCc--cEE
Q 048823 152 KRVLNTSRGPAVWALRAQTDKRE-----------YAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFG--MNF 218 (699)
Q Consensus 152 ~~~~~~s~g~~~~~~r~~~d~~~-----------~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG--~~i 218 (699)
+ . .+ ..|... +...+...+++ .||+++...+..+ +.+.+.|...+| .++
T Consensus 74 ~-----~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~~~~g~a~~~----~~~~v~v~~~~g~~~~~ 135 (471)
T PRK06467 74 F-----G-EP-------KIDIDKMRARKEKVVKQLTGGLAGMAKG-RKVTVVNGLGKFT----GGNTLEVTGEDGKTTVI 135 (471)
T ss_pred c-----C-CC-------CcCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEEEEEEc----cCCEEEEecCCCceEEE
Confidence 0 0 00 111111 12223344445 4899998777644 234445666666 479
Q ss_pred ecCeEEEecCCC
Q 048823 219 YAPSVVLTTGTF 230 (699)
Q Consensus 219 ~Ad~VVlAtG~~ 230 (699)
.+|.||+|||+.
T Consensus 136 ~~d~lViATGs~ 147 (471)
T PRK06467 136 EFDNAIIAAGSR 147 (471)
T ss_pred EcCEEEEeCCCC
Confidence 999999999985
No 57
>PRK14694 putative mercuric reductase; Provisional
Probab=99.35 E-value=3.2e-12 Score=144.64 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=75.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHh
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
..+|||+|||||++|+.||..|++.|.+|+|+|++ .+|. .|. ..|++....+.+...... .........++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~--~~GG-tc~-n~GciPsk~l~~~a~~~~-~~~~~~~~~g~~--- 75 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG--TIGG-TCV-NIGCVPSKIMIRAAHIAH-LRRESPFDDGLS--- 75 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc--cccc-cee-cCCccccHHHHHHHHHHH-HHhhccccCCcc---
Confidence 35799999999999999999999999999999985 2221 132 233332222222111000 000000000000
Q ss_pred hccCCCccccccccccCHHHHH-------HH-----HHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEec
Q 048823 155 LNTSRGPAVWALRAQTDKREYA-------MR-----MKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFYA 220 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~-------~~-----L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~A 220 (699)
... ...|...+. .. ....+.+..+++++..+|+.+.. .-+.|.+.+|. ++++
T Consensus 76 --------~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~----~~~~V~~~~g~~~~~~~ 141 (468)
T PRK14694 76 --------AQA--PVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE----RTLTVTLNDGGEQTVHF 141 (468)
T ss_pred --------cCC--CccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecC----CEEEEEecCCCeEEEEC
Confidence 000 011222121 11 22334445689999988888742 23567777763 7999
Q ss_pred CeEEEecCCC
Q 048823 221 PSVVLTTGTF 230 (699)
Q Consensus 221 d~VVlAtG~~ 230 (699)
|.||+|||+.
T Consensus 142 d~lViATGs~ 151 (468)
T PRK14694 142 DRAFIGTGAR 151 (468)
T ss_pred CEEEEeCCCC
Confidence 9999999985
No 58
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.34 E-value=5.3e-12 Score=142.05 Aligned_cols=46 Identities=33% Similarity=0.542 Sum_probs=37.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCC
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPA 121 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s 121 (699)
++|||+|||||++|++||+.|++.|++|+|+|++ .+.+.+..|.|+
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPs 48 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPK 48 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCcc
Confidence 3599999999999999999999999999999985 233334455544
No 59
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.33 E-value=1.3e-11 Score=139.51 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=75.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeec--ccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNI--DKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKR 153 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~--~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~ 153 (699)
..|||+|||||+||++||..|+++|.+|+|+|++. +.+.+.+|.|+..........+.+.....+-.. .....+.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIK-AENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcc-cCCCccCHH
Confidence 46999999999999999999999999999999852 333344555443222111222211111000000 000000000
Q ss_pred hhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcC-ccEEecCeEEEecCCCC
Q 048823 154 VLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFF-GMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 154 ~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~d-G~~i~Ad~VVlAtG~~~ 231 (699)
.+... .+.. ...+...+...+++. +++++..+++.+. .+.+.|...+ +..+.+|.||+|||+..
T Consensus 82 ~~~~~-------~~~~--~~~~~~~~~~~~~~~-gv~~~~g~~~~~~----~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 82 KVQEW-------KNGV--VNRLTGGVEGLLKKN-KVDIIRGEAKLVD----PNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred HHHHH-------HHHH--HHHHHHHHHHHHHhC-CCEEEEEEEEEcc----CCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 00000 0000 011122344455554 8999887776543 2233444333 45899999999999863
No 60
>PRK06370 mercuric reductase; Validated
Probab=99.33 E-value=1.6e-11 Score=138.65 Aligned_cols=47 Identities=34% Similarity=0.515 Sum_probs=37.6
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCC
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPA 121 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s 121 (699)
+.+|||+|||||++|++||+.|++.|++|+|+|+. .+.+.+..|.|+
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPs 51 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPT 51 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcH
Confidence 45699999999999999999999999999999985 233334444443
No 61
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.33 E-value=2.4e-11 Score=137.36 Aligned_cols=45 Identities=33% Similarity=0.509 Sum_probs=37.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCC
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNP 120 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~ 120 (699)
.+|||+|||||+||++||+.|++.|++|+|||++ .+++.+.+|-|
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciP 49 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIP 49 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccc
Confidence 3599999999999999999999999999999985 33344444544
No 62
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.32 E-value=4.6e-11 Score=137.69 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc-Ccc--EEec-CeEEEecCCCCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF-FGM--NFYA-PSVVLTTGTFMSG 233 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~-dG~--~i~A-d~VVlAtG~~~~~ 233 (699)
.+...|.+.+++. +++++ ++.|++|+.+ +++|+||... +|+ .+.| +.||+|||+|..+
T Consensus 209 ~l~~~l~~~~~~~-gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 209 ALIGRMLEAALAA-GVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccCC
Confidence 4566677777776 88887 6999999987 7899998764 443 5778 4899999999875
No 63
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.31 E-value=1.1e-11 Score=140.31 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=77.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CCceeEEeee-----------cccccCCCCCCCCCCCccchhhHHHHhhcCccch
Q 048823 76 ERFDVIVVGGGHAGCEAALASARL-GAKTLLLTLN-----------IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGK 143 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~-G~kV~LlE~~-----------~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~ 143 (699)
++|||+|||||++|..||+.+++. |.+|+|||++ .++|.+..|.|+..-....++.+.+.....+ +.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~-gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF-GW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc-Ce
Confidence 469999999999999999999997 9999999972 3344455555554333222333333221110 00
Q ss_pred hhc--hhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEc---C---c
Q 048823 144 VAD--MCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTF---F---G 215 (699)
Q Consensus 144 ~~d--~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~---d---G 215 (699)
..+ ...+.+..+...+ ..-...+...+.+.+++..++++++++...+ +.+.+.|... + +
T Consensus 81 ~~~~~~~~~d~~~~~~~~---------~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~----~~~~v~V~~~~~~~~~~~ 147 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAK---------NKAVLDINKSYEGMFADTEGLTFFLGWGALE----DKNVVLVRESADPKSAVK 147 (486)
T ss_pred eccCCccccCHHHHHHHH---------HHHHHHHHHHHHHHhhcCCCeEEEEEEEEEc----cCCEEEEeeccCCCCCcc
Confidence 000 0001111100000 0000122334444555545899998776533 2333444421 1 2
Q ss_pred cEEecCeEEEecCCC
Q 048823 216 MNFYAPSVVLTTGTF 230 (699)
Q Consensus 216 ~~i~Ad~VVlAtG~~ 230 (699)
+.+.+|.||+|||+.
T Consensus 148 ~~~~~d~lIIATGs~ 162 (486)
T TIGR01423 148 ERLQAEHILLATGSW 162 (486)
T ss_pred eEEECCEEEEecCCC
Confidence 479999999999986
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.30 E-value=3.2e-11 Score=125.47 Aligned_cols=131 Identities=24% Similarity=0.256 Sum_probs=86.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCc------cchhhHHHHhhcCccchhhchhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPA------KSQLVHEVDALGGEIGKVADMCY 149 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~------~~~l~~el~~lg~~~~~~~d~~~ 149 (699)
.++||+|||||+||++||+.|++.|++|+|+|+.....+.. +.|+.. .......++.+|-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~----~~gg~~~~~~~v~~~~~~~l~~~gv---------- 89 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM----WGGGMLFNKIVVQEEADEILDEFGI---------- 89 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc----ccCccccccccchHHHHHHHHHCCC----------
Confidence 35899999999999999999999999999999952211111 111110 0011112222221
Q ss_pred hhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC-----------ccE
Q 048823 150 LQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF-----------GMN 217 (699)
Q Consensus 150 i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d-----------G~~ 217 (699)
.+... ..+ . ...|+..+...|.+.+.+. |++++ ++.|+++..++++++.||.+.+ ..+
T Consensus 90 -~~~~~--~~g--~----~~vd~~~l~~~L~~~A~~~-Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~ 159 (257)
T PRK04176 90 -RYKEV--EDG--L----YVADSVEAAAKLAAAAIDA-GAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT 159 (257)
T ss_pred -Cceee--cCc--c----eeccHHHHHHHHHHHHHHc-CCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE
Confidence 11100 011 1 1357888999999998886 88987 5899999876344888887642 237
Q ss_pred EecCeEEEecCCC
Q 048823 218 FYAPSVVLTTGTF 230 (699)
Q Consensus 218 i~Ad~VVlAtG~~ 230 (699)
++|+.||+|||.+
T Consensus 160 i~Ak~VI~ATG~~ 172 (257)
T PRK04176 160 IEAKAVVDATGHD 172 (257)
T ss_pred EEcCEEEEEeCCC
Confidence 9999999999987
No 65
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.30 E-value=4e-10 Score=127.29 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=49.7
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMS 232 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~ 232 (699)
+.+++..+...|.+.+++. |++++ ++.|+++.. +..+.|.+.+| ++.|+.||+|+|+|+.
T Consensus 178 g~i~P~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~---~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALEL-GVEIHENTPMTGLEE---GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHc-CCEEECCCeEEEEee---CCceEEEeCCc-EEECCEEEEccccccc
Confidence 4678999999999999887 88888 589999863 34466888888 6999999999999953
No 66
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.30 E-value=7.5e-11 Score=136.04 Aligned_cols=112 Identities=25% Similarity=0.413 Sum_probs=78.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..|||+|||||+||++||..|++.|++|+|+|++ ..||.... ...+ .+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-----------~~GG~~~~--~~~i----------~~--------- 50 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-----------DFGGQITI--TSEV----------VN--------- 50 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-----------CCCceEEe--cccc----------cc---------
Confidence 4599999999999999999999999999999983 12221100 0000 00
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
-+.. .......+...+.+.++.. ++++++++|+.+..+ +..+.|.+.+| .+.++.||+|||++.
T Consensus 51 ----~pg~----~~~~~~~l~~~l~~~~~~~-gv~~~~~~V~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p 114 (555)
T TIGR03143 51 ----YPGI----LNTTGPELMQEMRQQAQDF-GVKFLQAEVLDVDFD--GDIKTIKTARG-DYKTLAVLIATGASP 114 (555)
T ss_pred ----CCCC----cCCCHHHHHHHHHHHHHHc-CCEEeccEEEEEEec--CCEEEEEecCC-EEEEeEEEECCCCcc
Confidence 0000 0123446777777777776 888888889988754 45566777666 689999999999864
No 67
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.29 E-value=2.3e-10 Score=120.48 Aligned_cols=142 Identities=24% Similarity=0.300 Sum_probs=83.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
|||+|||||++|+++|+.|++.|.+|+|+|++.. .+...|...+ .......+...+........ ...+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~-~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~----~~~~~~~ 71 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF-PRYKPCGGAL----SPRVLEELDLPLELIVNLVR----GARFFSP 71 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC-CCcccccCcc----CHhHHHHhcCCchhhhhhee----eEEEEcC
Confidence 7999999999999999999999999999999622 1111221111 11112222111100000000 0000000
Q ss_pred CCC----ccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc-CccEEecCeEEEecCCCC
Q 048823 158 SRG----PAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF-FGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 158 s~g----~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~-dG~~i~Ad~VVlAtG~~~ 231 (699)
... +........+++..+.+.|.+.+.+. |++++ +++|+++..+ ++.+ .+.+. ++.+++||.||+|+|.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~-gv~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 72 NGDSVEIPIETELAYVIDRDAFDEQLAERAQEA-GAELRLGTTVLDVEIH-DDRV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHc-CCEEEeCcEEeeEEEe-CCEE-EEEEcCccEEEEeCEEEECCCcch
Confidence 000 00001112468888999999999876 78885 7999998775 3443 34333 345899999999999873
No 68
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.29 E-value=7.5e-11 Score=124.72 Aligned_cols=111 Identities=30% Similarity=0.339 Sum_probs=77.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
|||+|||||++|+++|..|++.|++|+|+|++. .||.... ...+..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-----------~gg~~~~--~~~~~~~-------------------- 47 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-----------PGGQLTT--TTEVENY-------------------- 47 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-----------CCcceee--ccccccc--------------------
Confidence 699999999999999999999999999999841 1221100 0000000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
|.. ........+...+.+.+++. +++++.+.|+++..+ +..+.|.+.+|.++.+|.||+|||..
T Consensus 48 ---~~~---~~~~~~~~~~~~l~~~~~~~-gv~~~~~~v~~v~~~--~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 48 ---PGF---PEGISGPELMEKMKEQAVKF-GAEIIYEEVIKVDLS--DRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred ---CCC---CCCCChHHHHHHHHHHHHHc-CCeEEEEEEEEEEec--CCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 000 00123346677788888876 788877889988764 34456777788899999999999986
No 69
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.28 E-value=4.7e-11 Score=117.81 Aligned_cols=131 Identities=24% Similarity=0.297 Sum_probs=80.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccc------hhhHHHHhhcCccchhhchhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKS------QLVHEVDALGGEIGKVADMCY 149 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~------~l~~el~~lg~~~~~~~d~~~ 149 (699)
.++||+|||||++|++||+.|++.|+||+++|++..-.|. ...||.... ....-++.+ +
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg----~~~Gg~lf~~iVVq~~a~~iL~el-----------g 80 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG----MWGGGMLFNKIVVQEEADEILDEL-----------G 80 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT----TTS-CTT---EEEETTTHHHHHHH-----------T
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc----ccccccccchhhhhhhHHHHHHhC-----------C
Confidence 3699999999999999999999999999999995211111 111221110 111112222 2
Q ss_pred hhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEecCCCCEEEEEEcC------c-----cE
Q 048823 150 LQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIRE-AMVTDILLGKNDNVEGVCTFF------G-----MN 217 (699)
Q Consensus 150 i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e~~g~v~gV~t~d------G-----~~ 217 (699)
+.++.. +...+ ..|...+...|...+.+ +|+++++ ..|+++...+++++.||.++- | -.
T Consensus 81 i~y~~~----~~g~~----v~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~ 151 (230)
T PF01946_consen 81 IPYEEY----GDGYY----VADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLT 151 (230)
T ss_dssp ---EE-----SSEEE----ES-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EE
T ss_pred ceeEEe----CCeEE----EEcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcce
Confidence 222111 11111 35788888888888877 6999997 899999887448999998752 2 28
Q ss_pred EecCeEEEecCCC
Q 048823 218 FYAPSVVLTTGTF 230 (699)
Q Consensus 218 i~Ad~VVlAtG~~ 230 (699)
++|+.||.|||.-
T Consensus 152 i~ak~ViDaTGHd 164 (230)
T PF01946_consen 152 IRAKVVIDATGHD 164 (230)
T ss_dssp EEESEEEE---SS
T ss_pred EEEeEEEeCCCCc
Confidence 9999999999974
No 70
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.28 E-value=2.6e-11 Score=137.10 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=74.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee---cccccCCCCCCCCCCCccchhhHHHHhhc-CccchhhchhhhhH
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN---IDKIAWQPCNPAVGGPAKSQLVHEVDALG-GEIGKVADMCYLQK 152 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---~~~~g~~~c~~s~Gg~~~~~l~~el~~lg-~~~~~~~d~~~i~~ 152 (699)
+|||+|||||+||++||..|++.|++|+|||++ .+.|.+..|.|+..-.......+.+.... ..++... ...+.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~~~~~ 81 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTLNL 81 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-cCccCH
Confidence 599999999999999999999999999999973 34455566666543222222222111000 0000000 000000
Q ss_pred HhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEecCeEEEecCCC
Q 048823 153 RVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFYAPSVVLTTGTF 230 (699)
Q Consensus 153 ~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~VVlAtG~~ 230 (699)
.-... +.......+...+...+++ .+++++...+ .+.. ..+ +.|.+.+|. ++.+|.||+|||+.
T Consensus 82 ~~~~~---------~~~~~~~~~~~~~~~~~~~-~~v~~~~g~a-~~~~--~~~-v~v~~~~g~~~~~~~d~lVIATGs~ 147 (466)
T PRK06115 82 AQMMK---------QKDESVEALTKGVEFLFRK-NKVDWIKGWG-RLDG--VGK-VVVKAEDGSETQLEAKDIVIATGSE 147 (466)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHHh-CCCEEEEEEE-EEcc--CCE-EEEEcCCCceEEEEeCEEEEeCCCC
Confidence 00000 0000001112333344444 4899887665 3431 233 345556664 69999999999985
Q ss_pred C
Q 048823 231 M 231 (699)
Q Consensus 231 ~ 231 (699)
.
T Consensus 148 p 148 (466)
T PRK06115 148 P 148 (466)
T ss_pred C
Confidence 3
No 71
>PTZ00058 glutathione reductase; Provisional
Probab=99.28 E-value=4.7e-11 Score=136.98 Aligned_cols=57 Identities=28% Similarity=0.311 Sum_probs=45.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVH 132 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~ 132 (699)
.+|||+|||||++|..||+.|++.|.+|+|||++ .++|.+.+|.|+..-.......+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~ 105 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHD 105 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHH
Confidence 4699999999999999999999999999999986 45566677777765444333333
No 72
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.27 E-value=1.1e-09 Score=121.75 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=50.3
Q ss_pred ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 169 QTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 169 ~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.+++..+...|.+.+.+. |++++ +++|+++...+++++++|.+.+| .+.|+.||+|+|+|+
T Consensus 179 ~v~p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 179 TARHDAVAWGYARGADRR-GVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred cCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 567888888888888887 78887 58999997543567888999888 699999999999984
No 73
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.26 E-value=3e-11 Score=136.49 Aligned_cols=132 Identities=18% Similarity=0.167 Sum_probs=72.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
.+|||+|||||++|+++|+.|++.|++|+|+|++. .+| +.|. ..|++....+......+... .... .+ .
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~-~~G-G~~~-~~gcipsk~l~~~~~~~~~~----~~~~--~~--~ 72 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR-NVG-GGCT-HTGTIPSKALREAVLRLIGF----NQNP--LY--S 72 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc-ccc-cccc-ccCCCCHHHHHHHHHHHHHH----hhhh--hh--c
Confidence 46999999999999999999999999999999841 111 1121 11222211221111111000 0000 00 0
Q ss_pred ccCCCccccccccccCHH-----------HHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEecCe
Q 048823 156 NTSRGPAVWALRAQTDKR-----------EYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFYAPS 222 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~-----------~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~ 222 (699)
... .+ ...+.. .+...+.+.+.+. +++++...+..+. .+.+.|...+|. .+.+|.
T Consensus 73 ~~~-~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~~~~~----~~~~~v~~~~g~~~~~~~d~ 140 (461)
T PRK05249 73 SYR-VK------LRITFADLLARADHVINKQVEVRRGQYERN-RVDLIQGRARFVD----PHTVEVECPDGEVETLTADK 140 (461)
T ss_pred ccC-Cc------CccCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEec----CCEEEEEeCCCceEEEEcCE
Confidence 000 00 011111 1223344555554 8999887776553 233446666664 789999
Q ss_pred EEEecCCC
Q 048823 223 VVLTTGTF 230 (699)
Q Consensus 223 VVlAtG~~ 230 (699)
||+|||+.
T Consensus 141 lviATGs~ 148 (461)
T PRK05249 141 IVIATGSR 148 (461)
T ss_pred EEEcCCCC
Confidence 99999975
No 74
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.26 E-value=2.8e-11 Score=134.00 Aligned_cols=145 Identities=21% Similarity=0.225 Sum_probs=92.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCc-cchhhchhhhhHHh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGE-IGKVADMCYLQKRV 154 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~-~~~~~d~~~i~~~~ 154 (699)
.+|||+|||||+||++||+.|++.|++|+|+|++ ...|...|+ ++....+...++...... +........+ .
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~-~~~G~k~~~---~~~~~~~~l~~l~~~~~~~i~~~v~~~~~---~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKG-SEPGAKPCC---GGGLSPRALEELIPDFDEEIERKVTGARI---Y 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecC-CCCCCCccc---cceechhhHHHhCCCcchhhheeeeeeEE---E
Confidence 3599999999999999999999999999999995 344444443 333322333332211110 0000000000 0
Q ss_pred hccCCCcccc---ccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 155 LNTSRGPAVW---ALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 155 ~~~s~g~~~~---~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.. ....... .....+++..|.++|.+.+++. |++++ .+.|+++..+ ++.++.++..++.+++|+.||+|+|..
T Consensus 75 ~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 75 FP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAEEA-GAELYPGTRVTGVIRE-DDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred ec-CCceEEecCCCceEEEEhHHhhHHHHHHHHHc-CCEEEeceEEEEEEEe-CCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 00 0000000 1122568999999999999997 88887 5999999887 555555555555789999999999976
No 75
>PRK13748 putative mercuric reductase; Provisional
Probab=99.25 E-value=2.2e-11 Score=140.96 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=74.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKR 153 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~ 153 (699)
.+|||+|||||++|+.||+.|++.|.+|+|||++ .+.|.+..|.|+..-....++........ + + .++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~-~-----~-~g~~-- 167 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESP-F-----D-GGIA-- 167 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhccc-c-----c-CCcc--
Confidence 3699999999999999999999999999999985 23333444444332111111111111000 0 0 0000
Q ss_pred hhccCCCccccccccccCHHHHHHH------------HHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEe
Q 048823 154 VLNTSRGPAVWALRAQTDKREYAMR------------MKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFY 219 (699)
Q Consensus 154 ~~~~s~g~~~~~~r~~~d~~~~~~~------------L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~ 219 (699)
...+ ..+...+.+. ....+.+.++++++..+++.+. .+.+.|.+.+|. ++.
T Consensus 168 ----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~----~~~~~v~~~~g~~~~~~ 232 (561)
T PRK13748 168 ----ATVP-------TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKD----DQTLIVRLNDGGERVVA 232 (561)
T ss_pred ----CCCC-------ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEec----CCEEEEEeCCCceEEEE
Confidence 0000 1122222111 2233445458999988887553 334556666663 699
Q ss_pred cCeEEEecCCC
Q 048823 220 APSVVLTTGTF 230 (699)
Q Consensus 220 Ad~VVlAtG~~ 230 (699)
+|.||+|||+.
T Consensus 233 ~d~lviAtGs~ 243 (561)
T PRK13748 233 FDRCLIATGAS 243 (561)
T ss_pred cCEEEEcCCCC
Confidence 99999999985
No 76
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.24 E-value=9.7e-11 Score=114.78 Aligned_cols=134 Identities=23% Similarity=0.299 Sum_probs=86.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc-c-hhhHHHHhhcCccchhhchhhhhHHh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK-S-QLVHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~-~-~l~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
+.||+|||||++|++||+.||+.|+||+++|++ .++||..+ + .+...+- .-..-..+.++.++.++.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~----------ls~GGG~w~GGmlf~~iV-v~~~a~~iL~e~gI~ye~ 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK----------LSFGGGIWGGGMLFNKIV-VREEADEILDEFGIRYEE 98 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEee----------cccCCcccccccccceee-ecchHHHHHHHhCCccee
Confidence 479999999999999999999999999999995 33333211 0 0000000 000000011111111111
Q ss_pred hccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEecCCCCEEEEEEcCc-----------cEEecCe
Q 048823 155 LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIRE-AMVTDILLGKNDNVEGVCTFFG-----------MNFYAPS 222 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e~~g~v~gV~t~dG-----------~~i~Ad~ 222 (699)
. +..++ ..|...+...|...+.+. |+.+++ ..|+++...++.+|.||.++-. -.++|+.
T Consensus 99 ~----e~g~~----v~ds~e~~skl~~~a~~a-Gaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~ 169 (262)
T COG1635 99 E----EDGYY----VADSAEFASKLAARALDA-GAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKA 169 (262)
T ss_pred c----CCceE----EecHHHHHHHHHHHHHhc-CceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEE
Confidence 1 11111 357778888888888887 689886 9999998873338999987532 2789999
Q ss_pred EEEecCCC
Q 048823 223 VVLTTGTF 230 (699)
Q Consensus 223 VVlAtG~~ 230 (699)
||.|||.-
T Consensus 170 VvDaTGHd 177 (262)
T COG1635 170 VVDATGHD 177 (262)
T ss_pred EEeCCCCc
Confidence 99999964
No 77
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.22 E-value=9.6e-11 Score=132.42 Aligned_cols=44 Identities=27% Similarity=0.512 Sum_probs=35.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCC
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPA 121 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s 121 (699)
|||+|||||++|++||..|++.|++|+|+|++ .+++.+..|.|+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPs 46 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPS 46 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEcc
Confidence 79999999999999999999999999999985 233334444443
No 78
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.21 E-value=1.1e-10 Score=131.86 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=78.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhc---hhhhhH
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVAD---MCYLQK 152 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d---~~~i~~ 152 (699)
.||+|||||++|+.+|..|+++|.+|+|+|++ .+.+-+..|.|+..-....++.+.+...... +...+ ...+.+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~-g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAEL-GIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhC-CcccccCcccccCH
Confidence 37999999999999999999999999999985 2333344454443222222222222211100 00000 000111
Q ss_pred HhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEecCeEEEecCCC
Q 048823 153 RVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFYAPSVVLTTGTF 230 (699)
Q Consensus 153 ~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~VVlAtG~~ 230 (699)
..+.... ... ...+...+.+.+++. +++++..+++.+..+.+.+.+.|.+.+|. ++.+|.||+|||+.
T Consensus 81 ~~~~~~~--------~~~-~~~~~~~~~~~l~~~-gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~ 150 (466)
T PRK07845 81 PAVNARV--------KAL-AAAQSADIRARLERE-GVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGAS 150 (466)
T ss_pred HHHHHHH--------HHH-HHHHHHHHHHHHHHC-CCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCC
Confidence 1100000 000 011233455556665 89999888876541112344556666775 79999999999985
Q ss_pred C
Q 048823 231 M 231 (699)
Q Consensus 231 ~ 231 (699)
.
T Consensus 151 p 151 (466)
T PRK07845 151 P 151 (466)
T ss_pred C
Confidence 3
No 79
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.21 E-value=2e-10 Score=119.24 Aligned_cols=130 Identities=25% Similarity=0.270 Sum_probs=84.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccch------hhHHHHhhcCccchhhchhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQ------LVHEVDALGGEIGKVADMCY 149 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~------l~~el~~lg~~~~~~~d~~~ 149 (699)
.+|||+|||||++|++||+.|++.|.+|+|+|++.. +|.. .+.++..... ....++.+|
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~-~Ggg---~~~gg~~~~~~~~~~~~~~~l~~~g----------- 84 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA-FGGG---SWGGGMLFSKIVVEKPAHEILDEFG----------- 84 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCcc---ccCCCcceecccccchHHHHHHHCC-----------
Confidence 359999999999999999999999999999999622 1111 0111110000 011111111
Q ss_pred hhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCC--CEEEEEEcC-----------c
Q 048823 150 LQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKND--NVEGVCTFF-----------G 215 (699)
Q Consensus 150 i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g--~v~gV~t~d-----------G 215 (699)
+.+.. .+...+ ..++..+...|.+.+.+. +++++ ++.|+++..+ ++ ++.||.+.. .
T Consensus 85 i~~~~----~~~g~~----~~~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~-~~~~~V~GVv~~~~~v~~~g~~~d~ 154 (254)
T TIGR00292 85 IRYED----EGDGYV----VADSAEFISTLASKALQA-GAKIFNGTSVEDLITR-DDTVGVAGVVINWSAIELAGLHVDP 154 (254)
T ss_pred CCeee----ccCceE----EeeHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEe-CCCCceEEEEeCCccccccCCCCCC
Confidence 11100 011111 236678888888888887 78887 6899999876 44 689988752 2
Q ss_pred cEEecCeEEEecCCC
Q 048823 216 MNFYAPSVVLTTGTF 230 (699)
Q Consensus 216 ~~i~Ad~VVlAtG~~ 230 (699)
..++|+.||.|||..
T Consensus 155 ~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 155 LTQRSRVVVDATGHD 169 (254)
T ss_pred EEEEcCEEEEeecCC
Confidence 378999999999976
No 80
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.20 E-value=8e-11 Score=127.04 Aligned_cols=59 Identities=29% Similarity=0.319 Sum_probs=50.6
Q ss_pred ccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 169 QTDKREYAMRMKNIVESTANLCIRE-AMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 169 ~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.+++..+...|.+.+++. |++++. ++|++|..+ ++++.+|.+.+|. +.||.||+|+|.|
T Consensus 143 ~i~~~~l~~~l~~~~~~~-Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 143 VIDPRRLIQALAAEAQRA-GVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAW 202 (358)
T ss_dssp EEEHHHHHHHHHHHHHHT-T-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGG
T ss_pred cccccchhhhhHHHHHHh-hhhccccccccchhhc-ccccccccccccc-cccceeEeccccc
Confidence 478999999999999998 899885 799999987 7888899999997 9999999999998
No 81
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.20 E-value=9.7e-10 Score=120.84 Aligned_cols=62 Identities=26% Similarity=0.232 Sum_probs=51.6
Q ss_pred ccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 167 RAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 167 r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.+.+++..|...+.+.+.+.+...+. ++.|+.+..+ . ++++|.+.+|. ++|+.||+|+|.|+
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 34678999999999999998546666 5888888753 3 78999999996 99999999999984
No 82
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.20 E-value=2.7e-10 Score=128.70 Aligned_cols=34 Identities=47% Similarity=0.731 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.+|||+|||||++|++||..|++.|.+|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3599999999999999999999999999999983
No 83
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.20 E-value=1.9e-10 Score=130.52 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=74.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee-----------cccccCCCCCCCCCCCccchhhHHHHhhcCccchhh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN-----------IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVA 145 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~-----------~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~ 145 (699)
+|||||||||++|+.+|+.|++.|.+|+|||+. .+.|.+..|.|+..-....++.+.+.....+ +...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-GWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-Cccc
Confidence 589999999999999999999999999999973 2233444555544222222222222211100 0000
Q ss_pred ch-hhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCc--cEEecCe
Q 048823 146 DM-CYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFG--MNFYAPS 222 (699)
Q Consensus 146 d~-~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG--~~i~Ad~ 222 (699)
+. ..+.+..+...+ +.. ...+.......++.. +++++++...-+. .+.+.|...+| .++.+|.
T Consensus 81 ~~~~~~d~~~~~~~~-------~~~--v~~~~~~~~~~~~~~-~v~~i~G~a~f~~----~~~v~v~~~~g~~~~~~~d~ 146 (484)
T TIGR01438 81 EETVKHDWNRLSEAV-------QNH--IGSLNWGYRVALREK-KVNYENAYAEFVD----KHRIKATNKKGKEKIYSAER 146 (484)
T ss_pred CCCcccCHHHHHHHH-------HHH--HHHHHHHHHHHHhhC-CcEEEEEEEEEcC----CCEEEEeccCCCceEEEeCE
Confidence 00 000010000000 000 011223344445554 8999987776442 23334443344 3799999
Q ss_pred EEEecCCC
Q 048823 223 VVLTTGTF 230 (699)
Q Consensus 223 VVlAtG~~ 230 (699)
||+|||+.
T Consensus 147 lVIATGs~ 154 (484)
T TIGR01438 147 FLIATGER 154 (484)
T ss_pred EEEecCCC
Confidence 99999985
No 84
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.19 E-value=1.1e-09 Score=113.04 Aligned_cols=155 Identities=16% Similarity=0.187 Sum_probs=96.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHc----CCceeEEeeecccccCCCCCCCCCCCcc--------------chhhHHH-
Q 048823 74 IDERFDVIVVGGGHAGCEAALASARL----GAKTLLLTLNIDKIAWQPCNPAVGGPAK--------------SQLVHEV- 134 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LAr~----G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--------------~~l~~el- 134 (699)
.+.++||+|||||..|.+.|+.|.++ |++|+|+|++ ++....+...+.||+.. ..+++..
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd-dtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ 161 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD-DTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAR 161 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc-CcccccceeeeecceeeecccchhhhhhhHHHHHHHHHH
Confidence 45679999999999999999999763 7999999996 44444455566777631 1111111
Q ss_pred HhhcC--------------ccchh--------------------------hchhhhhHHhhccCCCccccc----ccccc
Q 048823 135 DALGG--------------EIGKV--------------------------ADMCYLQKRVLNTSRGPAVWA----LRAQT 170 (699)
Q Consensus 135 ~~lg~--------------~~~~~--------------------------~d~~~i~~~~~~~s~g~~~~~----~r~~~ 170 (699)
+.++- +..-. .|...-.|.|+|... -+... -...+
T Consensus 162 ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlnteg-VaLa~lG~e~EGwf 240 (509)
T KOG2853|consen 162 EHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEG-VALASLGVEKEGWF 240 (509)
T ss_pred HhhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccc-eeeeeccccccccc
Confidence 11221 00000 011112333444322 11111 12457
Q ss_pred CHHHHHHHHHHHHHccCCeEEEeeEEEEEEec---------CCC-------CEEEEEE--cCc--cEEecCeEEEecCCC
Q 048823 171 DKREYAMRMKNIVESTANLCIREAMVTDILLG---------KND-------NVEGVCT--FFG--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 171 d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e---------~~g-------~v~gV~t--~dG--~~i~Ad~VVlAtG~~ 230 (699)
|+..+...+++.+..+ |+.+.+++|+++..+ +++ ++.+|.+ .|+ +.+++..+|+|+|+|
T Consensus 241 dpw~LLs~~rrk~~~l-Gv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~ 319 (509)
T KOG2853|consen 241 DPWALLSGIRRKAITL-GVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW 319 (509)
T ss_pred CHHHHHHHHHHHhhhh-cceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence 9999999999999988 999999999998775 122 2333332 333 368899999999999
Q ss_pred C
Q 048823 231 M 231 (699)
Q Consensus 231 ~ 231 (699)
+
T Consensus 320 s 320 (509)
T KOG2853|consen 320 S 320 (509)
T ss_pred H
Confidence 4
No 85
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.18 E-value=1.7e-10 Score=129.00 Aligned_cols=146 Identities=20% Similarity=0.249 Sum_probs=87.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHH-Hhhc--Cccchhhc-------
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEV-DALG--GEIGKVAD------- 146 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el-~~lg--~~~~~~~d------- 146 (699)
+|||||||||+||++||+.|++.|++|+|||++. ..+...| .|+....+..+++ ..+. ........
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~-~~g~k~~---~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~ 80 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGN-SAGAKNV---TGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFM 80 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC-CCCCccc---ccceechhhHHHHhhhhhhcCcccceeeeeeEEEE
Confidence 5999999999999999999999999999999952 1221111 2332222222221 1000 00000000
Q ss_pred --hhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeE
Q 048823 147 --MCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSV 223 (699)
Q Consensus 147 --~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~V 223 (699)
...+.+.+.+... .........+++..|.+.|.+.+++. |++++ ++.|+++..+ ++++++|.+ +|.++.|+.|
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~v~R~~fD~~L~~~a~~~-Gv~i~~~~~V~~i~~~-~g~v~~v~~-~g~~i~A~~V 156 (428)
T PRK10157 81 TEKSAMTMDYCNGDE-TSPSQRSYSVLRSKFDAWLMEQAEEA-GAQLITGIRVDNLVQR-DGKVVGVEA-DGDVIEAKTV 156 (428)
T ss_pred cCCCceeeccccccc-cCCCCCceeeEHHHHHHHHHHHHHHC-CCEEECCCEEEEEEEe-CCEEEEEEc-CCcEEECCEE
Confidence 0000001110000 00011112457888999999999886 88887 5899999865 566666654 5668999999
Q ss_pred EEecCCC
Q 048823 224 VLTTGTF 230 (699)
Q Consensus 224 VlAtG~~ 230 (699)
|+|+|..
T Consensus 157 I~A~G~~ 163 (428)
T PRK10157 157 ILADGVN 163 (428)
T ss_pred EEEeCCC
Confidence 9999976
No 86
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.18 E-value=2.5e-11 Score=127.08 Aligned_cols=152 Identities=25% Similarity=0.287 Sum_probs=95.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCC-CCCCCCCc------cchhhHHHHhhc--Cccchhh
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPC-NPAVGGPA------KSQLVHEVDALG--GEIGKVA 145 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c-~~s~Gg~~------~~~l~~el~~lg--~~~~~~~ 145 (699)
+..+||||||||.+|++.|+.|+|.|.+|.||||+......... --..||.. -.+.++.+|+.. |+. .+.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~-ifk 121 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYA-IFK 121 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeE-EEe
Confidence 34689999999999999999999999999999997221100000 01223321 112222222211 110 011
Q ss_pred chh--hhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcC--cc--EEe
Q 048823 146 DMC--YLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFF--GM--NFY 219 (699)
Q Consensus 146 d~~--~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~d--G~--~i~ 219 (699)
+.. .+.+..-+....+.. ..++..+|.+.|++.+...|||++.++.|.++..| +|-+.||+..+ |+ +..
T Consensus 122 ~gk~v~~pyP~~~f~~d~~G----rsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee-~gvvkGV~yk~k~gee~~~~ 196 (509)
T KOG1298|consen 122 DGKEVDLPYPLKNFPSDPSG----RSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEE-EGVVKGVTYKNKEGEEVEAF 196 (509)
T ss_pred CCceeeccCCCcCCCCCccc----ceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhc-cCeEEeEEEecCCCceEEEe
Confidence 111 111211111111111 13456689999999999999999999999999876 68899998764 33 677
Q ss_pred cCeEEEecCCCCC
Q 048823 220 APSVVLTTGTFMS 232 (699)
Q Consensus 220 Ad~VVlAtG~~~~ 232 (699)
|...|+|+|.|++
T Consensus 197 ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 197 APLTVVCDGCFSN 209 (509)
T ss_pred cceEEEecchhHH
Confidence 8999999999953
No 87
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.17 E-value=1.2e-10 Score=128.70 Aligned_cols=150 Identities=23% Similarity=0.179 Sum_probs=97.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcC-c--------cch--hh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGG-E--------IGK--VA 145 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~-~--------~~~--~~ 145 (699)
.+||+|||||++|+++|+.|++.|++|+|||+......... -+.......++-++.+|- . +.. ..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~----r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~ 77 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG----RGIALSPNALRALERLGLWDRLEALGVPPLHVMVV 77 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc----eeeeecHhHHHHHHHcCChhhhhhccCCceeeEEE
Confidence 47999999999999999999999999999999511111100 111112233444455552 1 000 00
Q ss_pred chhh---hhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc-CccEEec
Q 048823 146 DMCY---LQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF-FGMNFYA 220 (699)
Q Consensus 146 d~~~---i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~-dG~~i~A 220 (699)
+..+ +.+.....+. ..+...+.+..+...|.+.+.+.++++++ .++|+.+..+ ++.+. |++. ||+++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~-v~l~~dG~~~~a 151 (387)
T COG0654 78 DDGGRRLLIFDAAELGR----GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVT-VTLSFDGETLDA 151 (387)
T ss_pred ecCCceeEEecccccCC----CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceE-EEEcCCCcEEec
Confidence 0000 1111111111 22233567889999999999999889998 5999999876 45666 7777 9999999
Q ss_pred CeEEEecCCCCCCcee
Q 048823 221 PSVVLTTGTFMSGKIW 236 (699)
Q Consensus 221 d~VVlAtG~~~~~~~~ 236 (699)
|.||.|+|.+|..+-.
T Consensus 152 ~llVgADG~~S~vR~~ 167 (387)
T COG0654 152 DLLVGADGANSAVRRA 167 (387)
T ss_pred CEEEECCCCchHHHHh
Confidence 9999999998754433
No 88
>PLN02661 Putative thiazole synthesis
Probab=99.17 E-value=7.3e-10 Score=118.53 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=83.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CCceeEEeeecccccCCCCCCCCCCCc------cchhhHHHHhhcCccchhhchh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARL-GAKTLLLTLNIDKIAWQPCNPAVGGPA------KSQLVHEVDALGGEIGKVADMC 148 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~-G~kV~LlE~~~~~~g~~~c~~s~Gg~~------~~~l~~el~~lg~~~~~~~d~~ 148 (699)
.++||+|||||++|+.+|+.|++. |++|+|||++.. .|...| .|+.. .....+.++.+|-.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~-~GGG~~---~gg~l~~~~vv~~~a~e~LeElGV~-------- 158 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS-PGGGAW---LGGQLFSAMVVRKPAHLFLDELGVP-------- 158 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc-ccccee---eCcccccccccccHHHHHHHHcCCC--------
Confidence 368999999999999999999986 899999998521 111111 11110 01111223333321
Q ss_pred hhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEecCCCCEEEEEEc------C--c----
Q 048823 149 YLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIRE-AMVTDILLGKNDNVEGVCTF------F--G---- 215 (699)
Q Consensus 149 ~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e~~g~v~gV~t~------d--G---- 215 (699)
+.. ..+ ... ..+...+...|.+.+.+.+|+++++ +.|+++..+ ++++.||.+. + +
T Consensus 159 ---fd~---~dg-y~v----v~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~ 226 (357)
T PLN02661 159 ---YDE---QEN-YVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCM 226 (357)
T ss_pred ---ccc---CCC-eeE----ecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCcc
Confidence 100 001 000 1133456677777776667999984 899999987 7889998852 1 1
Q ss_pred --cEEecCeEEEecCCC
Q 048823 216 --MNFYAPSVVLTTGTF 230 (699)
Q Consensus 216 --~~i~Ad~VVlAtG~~ 230 (699)
..|+|+.||+|||+.
T Consensus 227 dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 227 DPNVMEAKVVVSSCGHD 243 (357)
T ss_pred ceeEEECCEEEEcCCCC
Confidence 268999999999964
No 89
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.16 E-value=7.1e-09 Score=115.35 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=50.2
Q ss_pred ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 169 QTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 169 ~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.+|+..+...|.+.+.+. |++++ +++|+++..+ ++++++|.+.++ ++.||.||+|+|.|+
T Consensus 197 ~~~p~~~~~~l~~~~~~~-G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQL-GVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred cCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 568889999999988886 88887 5899999875 566777888766 799999999999983
No 90
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.16 E-value=4.9e-10 Score=126.75 Aligned_cols=157 Identities=22% Similarity=0.218 Sum_probs=90.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCc---------------cchhhHHHHhhcC
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPA---------------KSQLVHEVDALGG 139 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~---------------~~~l~~el~~lg~ 139 (699)
+.++||||||||++|++||+.|++.|.+|+||||.........+..+ +|.. ...+..++....+
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHT-RNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccC-CceeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 35699999999999999999999999999999996321111111111 1110 0112222222111
Q ss_pred cc------chhhchhhhhHHhhccC--------CCcccc-cccc--ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEe
Q 048823 140 EI------GKVADMCYLQKRVLNTS--------RGPAVW-ALRA--QTDKREYAMRMKNIVESTANLCIR-EAMVTDILL 201 (699)
Q Consensus 140 ~~------~~~~d~~~i~~~~~~~s--------~g~~~~-~~r~--~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~ 201 (699)
.. ..+.+...-...|+... .+...+ ..+. ......+...|.+.+++. +++++ +++|++|..
T Consensus 81 ~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~-gv~i~~~t~v~~l~~ 159 (466)
T PRK08274 81 GRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERL-GVEIRYDAPVTALEL 159 (466)
T ss_pred CCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEe
Confidence 10 00111111111122110 000000 0000 011356778888888876 78887 699999987
Q ss_pred cCCCCEEEEEEc--Cc--cEEecCeEEEecCCCCCCc
Q 048823 202 GKNDNVEGVCTF--FG--MNFYAPSVVLTTGTFMSGK 234 (699)
Q Consensus 202 e~~g~v~gV~t~--dG--~~i~Ad~VVlAtG~~~~~~ 234 (699)
+ ++++++|++. +| ..+.|+.||+|||+|....
T Consensus 160 ~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~ 195 (466)
T PRK08274 160 D-DGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNR 195 (466)
T ss_pred c-CCeEEEEEEEccCCceEEEECCEEEECCCCCCCCH
Confidence 6 6889998874 33 3689999999999997654
No 91
>PRK14727 putative mercuric reductase; Provisional
Probab=99.15 E-value=2.4e-10 Score=129.72 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=74.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee---cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN---IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQK 152 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~ 152 (699)
.+|||+|||||++|+++|+.|++.|.+|+|+|++ .+.|.+..|.|+..-.....+.+...... .+ ++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~-~~-------g~~- 85 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNP-FD-------GVE- 85 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcc-cc-------Ccc-
Confidence 4699999999999999999999999999999985 23344444544432111111111111100 00 000
Q ss_pred HhhccCCCccccccccccCHHHH-------HH-----HHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EE
Q 048823 153 RVLNTSRGPAVWALRAQTDKREY-------AM-----RMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NF 218 (699)
Q Consensus 153 ~~~~~s~g~~~~~~r~~~d~~~~-------~~-----~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i 218 (699)
...+ ..|...+ .. .+.+.++...+++++.+.+.-+ +.+.+.|.+.+|. ++
T Consensus 86 -----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~----~~~~v~v~~~~g~~~~~ 149 (479)
T PRK14727 86 -----AVAP-------SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFK----DGNTLVVRLHDGGERVL 149 (479)
T ss_pred -----cCCC-------ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEe----cCCEEEEEeCCCceEEE
Confidence 0000 1111111 11 1223343334799988776533 2345567777764 69
Q ss_pred ecCeEEEecCCC
Q 048823 219 YAPSVVLTTGTF 230 (699)
Q Consensus 219 ~Ad~VVlAtG~~ 230 (699)
.+|.||+|||+.
T Consensus 150 ~~d~lViATGs~ 161 (479)
T PRK14727 150 AADRCLIATGST 161 (479)
T ss_pred EeCEEEEecCCC
Confidence 999999999975
No 92
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.15 E-value=3.9e-10 Score=129.81 Aligned_cols=151 Identities=22% Similarity=0.201 Sum_probs=92.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCc--------cchh----hHH---HH------
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPA--------KSQL----VHE---VD------ 135 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~--------~~~l----~~e---l~------ 135 (699)
.|||+|||||+.|+++|+.|+++|++|+|||++ .++......+.|.+. .... .++ +.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~--d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~ 83 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERH--DIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHC 83 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECC--CCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHh
Confidence 599999999999999999999999999999995 222221111111110 0000 111 11
Q ss_pred --hhcCccchhhch--------------hhhhHHhh------------ccCCCccccccccccCHHHHHHHHHHHHHccC
Q 048823 136 --ALGGEIGKVADM--------------CYLQKRVL------------NTSRGPAVWALRAQTDKREYAMRMKNIVESTA 187 (699)
Q Consensus 136 --~lg~~~~~~~d~--------------~~i~~~~~------------~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~ 187 (699)
..++++....+. .++..+++ +..--.+.+.+.+++|+..+...+...+.++
T Consensus 84 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~- 162 (546)
T PRK11101 84 VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEH- 162 (546)
T ss_pred hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHhC-
Confidence 111111100000 00000000 0000112334456789999999998888887
Q ss_pred CeEEE-eeEEEEEEecCCCCEEEEEEcC---c--cEEecCeEEEecCCCC
Q 048823 188 NLCIR-EAMVTDILLGKNDNVEGVCTFF---G--MNFYAPSVVLTTGTFM 231 (699)
Q Consensus 188 gv~i~-~~~V~~l~~e~~g~v~gV~t~d---G--~~i~Ad~VVlAtG~~~ 231 (699)
|++++ +++|+++..+ ++++++|++.+ | .+|.|+.||+|+|.|+
T Consensus 163 Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 163 GAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 78876 6999999876 67888888643 3 3799999999999993
No 93
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.14 E-value=2.4e-10 Score=128.95 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=75.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHh---hcCccchhhchhhhhHH
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDA---LGGEIGKVADMCYLQKR 153 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~---lg~~~~~~~d~~~i~~~ 153 (699)
+|+|||||++|+.||..|++.|.+|+|||++ .++|-+..|.|+..-....++.+.+.. +|-... .+...+.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~--~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLP--NGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCcccc--CCCCccCHH
Confidence 6999999999999999999999999999986 344445556555432222222222211 110000 000000000
Q ss_pred hhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc-EEecCeEEEecCCCC
Q 048823 154 VLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM-NFYAPSVVLTTGTFM 231 (699)
Q Consensus 154 ~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~-~i~Ad~VVlAtG~~~ 231 (699)
.+... ..-....+...+...+.+ .++++++.++..+. .+.+.|...+|. ++.+|.||+|||+..
T Consensus 80 ~~~~~---------~~~~~~~~~~~~~~~~~~-~~v~~~~g~a~~~~----~~~v~v~~~~~~~~~~~d~lviATGs~p 144 (458)
T PRK06912 80 QMQAR---------KSQIVTQLVQGIQYLMKK-NKIKVIQGKASFET----DHRVRVEYGDKEEVVDAEQFIIAAGSEP 144 (458)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHhh-CCcEEEEEEEEEcc----CCEEEEeeCCCcEEEECCEEEEeCCCCC
Confidence 00000 000001112233333444 48999988886553 333445555553 799999999999863
No 94
>PRK10015 oxidoreductase; Provisional
Probab=99.13 E-value=2.3e-10 Score=127.89 Aligned_cols=148 Identities=19% Similarity=0.201 Sum_probs=88.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHH-hhc--Cccchhhc------
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVD-ALG--GEIGKVAD------ 146 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~-~lg--~~~~~~~d------ 146 (699)
.+|||||||||+||++||+.||+.|++|+|||++ ...+...| .|+....+...++. .+. ........
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~-~~~g~k~~---~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERG-DSAGCKNM---TGGRLYAHTLEAIIPGFAASAPVERKVTREKISF 79 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc---cCceeecccHHHHcccccccCCccccccceeEEE
Confidence 3599999999999999999999999999999995 22222211 13322222222221 000 00000000
Q ss_pred --h-hhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCe
Q 048823 147 --M-CYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPS 222 (699)
Q Consensus 147 --~-~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~ 222 (699)
. ......+.....+ ........+++..|.+.|.+.+++. |++++ ++.|+++..+ ++++.+|.+.+ .++.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~R~~fd~~L~~~a~~~-Gv~i~~~~~V~~i~~~-~~~v~~v~~~~-~~i~A~~ 155 (429)
T PRK10015 80 LTEESAVTLDFHREQPD-VPQHASYTVLRNRLDPWLMEQAEQA-GAQFIPGVRVDALVRE-GNKVTGVQAGD-DILEANV 155 (429)
T ss_pred EeCCCceEeecccCCCC-CCCcCceEeehhHHHHHHHHHHHHc-CCEEECCcEEEEEEEe-CCEEEEEEeCC-eEEECCE
Confidence 0 0000000000000 0000112467888999999988886 88887 5899998765 56777776544 4799999
Q ss_pred EEEecCCCC
Q 048823 223 VVLTTGTFM 231 (699)
Q Consensus 223 VVlAtG~~~ 231 (699)
||+|+|..+
T Consensus 156 VI~AdG~~s 164 (429)
T PRK10015 156 VILADGVNS 164 (429)
T ss_pred EEEccCcch
Confidence 999999863
No 95
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.13 E-value=4.5e-10 Score=123.69 Aligned_cols=152 Identities=20% Similarity=0.133 Sum_probs=89.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCC-ccchhhHHHHhhcCccchhhchh--hh-h
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGP-AKSQLVHEVDALGGEIGKVADMC--YL-Q 151 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~-~~~~l~~el~~lg~~~~~~~d~~--~i-~ 151 (699)
..+||+|||||++|+++|+.|++.|.+|+|+|++..... ..+....... ......+-++.+|-. ....... .+ .
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-~~~~~~~r~~~l~~~~~~~l~~~g~~-~~~~~~~~~~~~~ 81 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRP-ADDAWDSRVYAISPSSQAFLERLGVW-QALDAARLAPVYD 81 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccc-cCCCCCCceEeecHHHHHHHHHcCch-hhhhhhcCCcceE
Confidence 458999999999999999999999999999999632111 1111000101 111222333333311 1000000 00 0
Q ss_pred HHhhccCCC--------ccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeE
Q 048823 152 KRVLNTSRG--------PAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSV 223 (699)
Q Consensus 152 ~~~~~~s~g--------~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~V 223 (699)
..+.....+ .........+++..+.+.|.+.+++.+++++++++|+++..+ ++ .+.|++.+|.+++||.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~-~~-~~~v~~~~g~~~~a~~v 159 (388)
T PRK07608 82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVD-PD-AATLTLADGQVLRADLV 159 (388)
T ss_pred EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEec-CC-eEEEEECCCCEEEeeEE
Confidence 000000000 000001123567889999999998876688888889998754 33 35588888888999999
Q ss_pred EEecCCCC
Q 048823 224 VLTTGTFM 231 (699)
Q Consensus 224 VlAtG~~~ 231 (699)
|+|+|.++
T Consensus 160 I~adG~~S 167 (388)
T PRK07608 160 VGADGAHS 167 (388)
T ss_pred EEeCCCCc
Confidence 99999985
No 96
>PLN02697 lycopene epsilon cyclase
Probab=99.12 E-value=5e-10 Score=127.34 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=88.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCc--c-chhhchhhhhH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGE--I-GKVADMCYLQK 152 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~--~-~~~~d~~~i~~ 152 (699)
..|||+|||||+||+++|++|++.|++|+|||+.. ...|+ .|.+. .+++.++-. . ..+.+ ..
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~----p~~~n---~GvW~----~~l~~lgl~~~i~~~w~~-~~--- 171 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL----PFTNN---YGVWE----DEFKDLGLEDCIEHVWRD-TI--- 171 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc----cCCCc---cccch----hHHHhcCcHHHHHhhcCC-cE---
Confidence 45999999999999999999999999999999741 12222 22221 122222200 0 00000 00
Q ss_pred HhhccCCCcc-ccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 153 RVLNTSRGPA-VWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 153 ~~~~~s~g~~-~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.......+. ....-..+++..+.+.|.+.+.+. |++++++.|+++..+ ++.+..+.+.+|.++.|+.||+|+|.++
T Consensus 172 -v~~~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~-GV~~~~~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 172 -VYLDDDKPIMIGRAYGRVSRTLLHEELLRRCVES-GVSYLSSKVDRITEA-SDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred -EEecCCceeeccCcccEEcHHHHHHHHHHHHHhc-CCEEEeeEEEEEEEc-CCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000000000 001112478889999999998875 888888999999765 4555556677888999999999999985
No 97
>PLN02546 glutathione reductase
Probab=99.12 E-value=3e-10 Score=130.43 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=77.7
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee------------cccccCCCCCCCCCCCccchhhHHHHhhcCccc
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN------------IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIG 142 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~------------~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~ 142 (699)
..+|||+|||||++|..||..|+++|++|+|+|+. .++|.+.+|.|+.--.....+.+++.....+-.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34699999999999999999999999999999962 222333344333322222222232222110000
Q ss_pred hhhchhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCe
Q 048823 143 KVADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPS 222 (699)
Q Consensus 143 ~~~d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~ 222 (699)
.......++|..+...+ ......+...+.+.+++. |++++..+++.+. ... |.+ +|+.+.+|.
T Consensus 157 ~~~~~~~~d~~~~~~~k---------~~~~~~l~~~~~~~l~~~-gV~~i~G~a~~vd---~~~---V~v-~G~~~~~D~ 219 (558)
T PLN02546 157 KYETEPKHDWNTLIANK---------NAELQRLTGIYKNILKNA-GVTLIEGRGKIVD---PHT---VDV-DGKLYTARN 219 (558)
T ss_pred ccCCCCCCCHHHHHHHH---------HHHHHHHHHHHHHHHHhC-CcEEEEeEEEEcc---CCE---EEE-CCEEEECCE
Confidence 00000011111110000 001123345555666665 8999988887664 222 333 577899999
Q ss_pred EEEecCCC
Q 048823 223 VVLTTGTF 230 (699)
Q Consensus 223 VVlAtG~~ 230 (699)
||+|||+.
T Consensus 220 LVIATGs~ 227 (558)
T PLN02546 220 ILIAVGGR 227 (558)
T ss_pred EEEeCCCC
Confidence 99999975
No 98
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.12 E-value=2.4e-11 Score=135.78 Aligned_cols=142 Identities=23% Similarity=0.333 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc--chhhHHHHhhcCccchhhchhhhhHHhhc
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK--SQLVHEVDALGGEIGKVADMCYLQKRVLN 156 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~--~~l~~el~~lg~~~~~~~d~~~i~~~~~~ 156 (699)
||||||||++|++||+++|+.|++|+|||+. +.+|...+ .++... ...... ...++....+.+........ .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~-~~lGG~~t---~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~-~ 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKG-GFLGGMAT---SGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGY-P 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SS-SSSTGGGG---GSSS-EETTEEHHH-HHHHHHHHHHHHST--------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECC-ccCCCcce---ECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccc-c
Confidence 8999999999999999999999999999985 22222111 111110 000000 11111111111110000000 0
Q ss_pred cCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC---ccEEecCeEEEecCC
Q 048823 157 TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF---GMNFYAPSVVLTTGT 229 (699)
Q Consensus 157 ~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d---G~~i~Ad~VVlAtG~ 229 (699)
......|.....+++..+...+.+.+.+ .|++++ ++.|+++..+ ++++++|++.+ ..+|.|+.||.|||.
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 75 -QEDRYGWVSNVPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred -cccccccccccccccccccccccccccc-ccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 0000011111246778888888888876 489987 7999999987 78999999875 348999999999994
No 99
>PRK07045 putative monooxygenase; Reviewed
Probab=99.12 E-value=7.9e-10 Score=121.99 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=91.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCC-ccchhhHHHHhhcCccchhhchh-----h
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGP-AKSQLVHEVDALGGEIGKVADMC-----Y 149 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~-~~~~l~~el~~lg~~~~~~~d~~-----~ 149 (699)
..+||+|||||++|+++|+.|++.|++|+|+|+.... ....++. ......+-++.+|-. ..+.... .
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~------~~~~~~~~l~~~~~~~L~~lGl~-~~~~~~~~~~~~~ 76 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN------RAQNGADLLKPSGIGVVRAMGLL-DDVFAAGGLRRDA 76 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc------cCCCcccccCccHHHHHHHcCCH-HHHHhcccccccc
Confidence 4589999999999999999999999999999996321 1111111 111112223333311 0000000 0
Q ss_pred hh----HHhhc-cC-CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCe
Q 048823 150 LQ----KRVLN-TS-RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPS 222 (699)
Q Consensus 150 i~----~~~~~-~s-~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~ 222 (699)
+. .+... .. ...........+.+..+.+.|.+.+...+++++. +++|+++..++++.++.|++.+|+++.+|.
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~ 156 (388)
T PRK07045 77 MRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTV 156 (388)
T ss_pred eEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCE
Confidence 00 00000 00 0000001111346677888888888777889986 799999987645556778888999999999
Q ss_pred EEEecCCCCC
Q 048823 223 VVLTTGTFMS 232 (699)
Q Consensus 223 VVlAtG~~~~ 232 (699)
||.|+|.++.
T Consensus 157 vIgADG~~S~ 166 (388)
T PRK07045 157 LVGADGARSM 166 (388)
T ss_pred EEECCCCChH
Confidence 9999999863
No 100
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.12 E-value=4.3e-10 Score=123.97 Aligned_cols=148 Identities=22% Similarity=0.180 Sum_probs=90.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchh-hh-hH
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMC-YL-QK 152 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~-~i-~~ 152 (699)
+..+||+|||||++|+++|+.|++.|.+|+|+|+.... .. .-..+... ...+-++.+|-. ....+.. .+ ..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~-~~----~r~~~l~~-~s~~~l~~lgl~-~~~~~~~~~~~~~ 77 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY-AD----LRTTALLG-PSIRFLERLGLW-ARLAPHAAPLQSM 77 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC-CC----cchhhCcH-HHHHHHHHhCch-hhhHhhcceeeEE
Confidence 34689999999999999999999999999999995221 11 00111111 122334444311 1110000 00 00
Q ss_pred HhhccCC----Cc---------cccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEe
Q 048823 153 RVLNTSR----GP---------AVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFY 219 (699)
Q Consensus 153 ~~~~~s~----g~---------~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~ 219 (699)
++..... .+ ........+++..+.+.|.+.+.+.+++..++++|+++..+ ++. +.|++.+|.+++
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~-~~v~~~~g~~~~ 155 (388)
T PRK07494 78 RIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPR-EDE-VTVTLADGTTLS 155 (388)
T ss_pred EEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCe-EEEEECCCCEEE
Confidence 0000000 00 00001123567788999999998887788678999999765 344 447788888999
Q ss_pred cCeEEEecCCCC
Q 048823 220 APSVVLTTGTFM 231 (699)
Q Consensus 220 Ad~VVlAtG~~~ 231 (699)
||.||+|+|.++
T Consensus 156 a~~vI~AdG~~S 167 (388)
T PRK07494 156 ARLVVGADGRNS 167 (388)
T ss_pred EeEEEEecCCCc
Confidence 999999999985
No 101
>PRK08013 oxidoreductase; Provisional
Probab=99.11 E-value=5.5e-10 Score=123.87 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=91.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCc-cchhhHHHHhhcCccchhhch-----hhh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPA-KSQLVHEVDALGGEIGKVADM-----CYL 150 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~-~~~l~~el~~lg~~~~~~~d~-----~~i 150 (699)
++||+|||||++|+++|+.|++.|++|+|+|+.........+.....+.. .....+-++.+|-. ..+... ...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~-~~~~~~~~~~~~~~ 81 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW-QDILARRASCYHGM 81 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCc-hhhhhhcCccccEE
Confidence 48999999999999999999999999999999632110000000111100 11123334444311 110000 000
Q ss_pred h-------HHh-hc-cCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEec
Q 048823 151 Q-------KRV-LN-TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYA 220 (699)
Q Consensus 151 ~-------~~~-~~-~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~A 220 (699)
. .+. +. ...+. ......+++..+...|.+.+.+.++++++ .++|+++..+ ++ .+.|++.+|++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~-~v~v~~~~g~~i~a 157 (400)
T PRK08013 82 EVWDKDSFGRIAFDDQSMGY--SHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWG-EN-EAFLTLKDGSMLTA 157 (400)
T ss_pred EEEeCCCCceEEEcccccCC--CccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CC-eEEEEEcCCCEEEe
Confidence 0 000 00 00010 00112457778899999999888789987 6999999765 33 34567788989999
Q ss_pred CeEEEecCCCCCC
Q 048823 221 PSVVLTTGTFMSG 233 (699)
Q Consensus 221 d~VVlAtG~~~~~ 233 (699)
|.||.|+|.+|..
T Consensus 158 ~lvVgADG~~S~v 170 (400)
T PRK08013 158 RLVVGADGANSWL 170 (400)
T ss_pred eEEEEeCCCCcHH
Confidence 9999999998643
No 102
>PLN02985 squalene monooxygenase
Probab=99.11 E-value=6.5e-10 Score=126.80 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=91.9
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhch---hhhh
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADM---CYLQ 151 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~---~~i~ 151 (699)
+..+||+|||||++|+++|++|++.|.+|+|+|+..... ...| |-.....-.+-++.+|-. ..+.+. ....
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~-~~~~----g~~L~p~g~~~L~~LGl~-d~l~~~~~~~~~~ 114 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREP-ERMM----GEFMQPGGRFMLSKLGLE-DCLEGIDAQKATG 114 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCC-cccc----ccccCchHHHHHHHcCCc-chhhhccCccccc
Confidence 456899999999999999999999999999999952211 1111 111111112233333311 000000 0000
Q ss_pred HHhhcc----------CCCcc-ccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEc--Ccc--
Q 048823 152 KRVLNT----------SRGPA-VWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTF--FGM-- 216 (699)
Q Consensus 152 ~~~~~~----------s~g~~-~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~--dG~-- 216 (699)
+..... ..... .......+++..+.+.|.+.+.+.+++++..++|+++..+ ++.+.+|++. +|+
T Consensus 115 ~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~-~~~v~gV~~~~~dG~~~ 193 (514)
T PLN02985 115 MAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEE-KGVIKGVTYKNSAGEET 193 (514)
T ss_pred EEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEc-CCEEEEEEEEcCCCCEE
Confidence 000000 00000 0001123567789999999998888999988888888765 5667777753 564
Q ss_pred EEecCeEEEecCCCCCCce
Q 048823 217 NFYAPSVVLTTGTFMSGKI 235 (699)
Q Consensus 217 ~i~Ad~VVlAtG~~~~~~~ 235 (699)
++.||.||+|+|.+|..+-
T Consensus 194 ~~~AdLVVgADG~~S~vR~ 212 (514)
T PLN02985 194 TALAPLTVVCDGCYSNLRR 212 (514)
T ss_pred EEECCEEEECCCCchHHHH
Confidence 4679999999999975443
No 103
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.11 E-value=5.9e-10 Score=123.12 Aligned_cols=141 Identities=21% Similarity=0.278 Sum_probs=84.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
|||+|||||+||+++|+.|++.|++|+|+|++... ...|. +++.. ...+ .++- ...+....-....+...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~--~~~cg---~~i~~-~~l~---~l~i-~~~~~~~~~~~~~~~~~ 70 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSN--IKPCG---GAIPP-CLIE---EFDI-PDSLIDRRVTQMRMISP 70 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC--cCcCc---CCcCH-hhhh---hcCC-chHHHhhhcceeEEEcC
Confidence 79999999999999999999999999999996221 12342 22221 1122 2210 00000000000000000
Q ss_pred CC------CccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcC------c--cEEecCeE
Q 048823 158 SR------GPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFF------G--MNFYAPSV 223 (699)
Q Consensus 158 s~------g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~d------G--~~i~Ad~V 223 (699)
.. .+.....-..+++..|.+.|.+.+.+. |++++.+.|+++..+ ++ .+.|.+.+ | .+++|+.|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~-G~~v~~~~v~~v~~~-~~-~~~v~~~~~~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 71 SRVPIKVTIPSEDGYVGMVRREVFDSYLRERAQKA-GAELIHGLFLKLERD-RD-GVTLTYRTPKKGAGGEKGSVEADVV 147 (388)
T ss_pred CCceeeeccCCCCCceEeeeHHHHHHHHHHHHHhC-CCEEEeeEEEEEEEc-CC-eEEEEEEeccccCCCcceEEEeCEE
Confidence 00 000000011368899999999998886 889887779998765 33 34455542 2 37999999
Q ss_pred EEecCCCC
Q 048823 224 VLTTGTFM 231 (699)
Q Consensus 224 VlAtG~~~ 231 (699)
|.|+|.++
T Consensus 148 I~AdG~~S 155 (388)
T TIGR02023 148 IGADGANS 155 (388)
T ss_pred EECCCCCc
Confidence 99999874
No 104
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.10 E-value=3.3e-10 Score=126.14 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---Ccc--EEecCeEEEecCCCCC
Q 048823 171 DKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---FGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 171 d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~ 232 (699)
....+...|.+.+++. +++++ ++.|++|+.+ +++|+||... +|+ +|.|+.||+|||+|.+
T Consensus 139 ~g~~~~~~l~~~~~~~-gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEA-GVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHT-TEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhc-CeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3567888999999998 68887 6999999997 7899999876 454 6889999999999965
No 105
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.09 E-value=1.8e-09 Score=118.61 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=94.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC--CceeEEeeecccccCCCCCCCCCCC------ccchhhHHH------------H
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLG--AKTLLLTLNIDKIAWQPCNPAVGGP------AKSQLVHEV------------D 135 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~~~~~g~~~c~~s~Gg~------~~~~l~~el------------~ 135 (699)
.+|||+|||||+.|+++|++|++++ ++|+|+||. +..+..+.+...|-+ ..+.+...+ +
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~-~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKE-DGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEcc-CccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999 999999995 444443333222111 001111111 1
Q ss_pred hhc-------C-------------------------ccchhhchhhhhHHhhccCCC--cccccc-ccccCHHHHHHHHH
Q 048823 136 ALG-------G-------------------------EIGKVADMCYLQKRVLNTSRG--PAVWAL-RAQTDKREYAMRMK 180 (699)
Q Consensus 136 ~lg-------~-------------------------~~~~~~d~~~i~~~~~~~s~g--~~~~~~-r~~~d~~~~~~~L~ 180 (699)
.++ . .+....|...+.....+-..+ .+.+.+ ...+|...+...|.
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 111 0 001111111111111111111 122333 23568999999999
Q ss_pred HHHHccCCeEE-EeeEEEEEEecCCCCEEEEEEcCccE-EecCeEEEecCCC
Q 048823 181 NIVESTANLCI-REAMVTDILLGKNDNVEGVCTFFGMN-FYAPSVVLTTGTF 230 (699)
Q Consensus 181 ~~l~~~~gv~i-~~~~V~~l~~e~~g~v~gV~t~dG~~-i~Ad~VVlAtG~~ 230 (699)
+.+.++ |+.+ ++++|++|... ++.++.+.+.+|++ ++|+.||+|+|.+
T Consensus 161 e~a~~~-g~~i~ln~eV~~i~~~-~dg~~~~~~~~g~~~~~ak~Vin~AGl~ 210 (429)
T COG0579 161 EEAQAN-GVELRLNTEVTGIEKQ-SDGVFVLNTSNGEETLEAKFVINAAGLY 210 (429)
T ss_pred HHHHHc-CCEEEecCeeeEEEEe-CCceEEEEecCCcEEEEeeEEEECCchh
Confidence 999998 7776 58999999986 34477788889876 9999999999987
No 106
>PLN02463 lycopene beta cyclase
Probab=99.08 E-value=1.1e-09 Score=122.49 Aligned_cols=142 Identities=20% Similarity=0.205 Sum_probs=89.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..|||+|||||+||+++|+.|++.|++|+|+|+... ...++ ..+. ...+++.+|- ...+ +.........
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~--~~~p~---~~g~----w~~~l~~lgl-~~~l-~~~w~~~~v~ 95 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL--SIWPN---NYGV----WVDEFEALGL-LDCL-DTTWPGAVVY 95 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc--chhcc---ccch----HHHHHHHCCc-HHHH-HhhCCCcEEE
Confidence 459999999999999999999999999999998521 11111 1111 1223333321 0000 0000000000
Q ss_pred -ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 -NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 -~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
..........+-..+++..+.+.|.+.+.+. |++++.++|+++..+ +..+.|++.+|.++.|+.||+|+|..+
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~-GV~~~~~~V~~I~~~--~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIAN-GVQFHQAKVKKVVHE--ESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhc-CCEEEeeEEEEEEEc--CCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 0000000111122468889999999988775 899888899999865 334678889998999999999999763
No 107
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.08 E-value=1e-09 Score=121.96 Aligned_cols=150 Identities=18% Similarity=0.150 Sum_probs=88.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeeccc--ccCCCCCCCCCCC-ccchhhHHHHhhcCccchhhchhh--h-
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDK--IAWQPCNPAVGGP-AKSQLVHEVDALGGEIGKVADMCY--L- 150 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~--~g~~~c~~s~Gg~-~~~~l~~el~~lg~~~~~~~d~~~--i- 150 (699)
.+||+|||||++|+++|+.|++.|++|+|+|+.... .+.. +...+. ......+-++.+|-. ..+..... +
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~---~~~r~~~l~~~~~~~L~~lGl~-~~l~~~~~~~~~ 79 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNEL---PDVRVSALSRSSEHILRNLGAW-QGIEARRAAPYI 79 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCC---CCcceecccHHHHHHHHhCCch-hhhhhhhCCccc
Confidence 589999999999999999999999999999985111 1110 001111 111223334444411 11100000 0
Q ss_pred hHHhhcc---------CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEec
Q 048823 151 QKRVLNT---------SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYA 220 (699)
Q Consensus 151 ~~~~~~~---------s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~A 220 (699)
.+.+... ............+++..+...|.+.+.+.+++++. .++|+++..+ ++ .+.|.+.+|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~-~~~v~~~~g~~~~a 157 (405)
T PRK08850 80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVG-ES-EAWLTLDNGQALTA 157 (405)
T ss_pred EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEee-CC-eEEEEECCCCEEEe
Confidence 0000000 00000000111245566778888888887789987 6899999765 33 35678889989999
Q ss_pred CeEEEecCCCCC
Q 048823 221 PSVVLTTGTFMS 232 (699)
Q Consensus 221 d~VVlAtG~~~~ 232 (699)
|.||.|+|..+.
T Consensus 158 ~lvIgADG~~S~ 169 (405)
T PRK08850 158 KLVVGADGANSW 169 (405)
T ss_pred CEEEEeCCCCCh
Confidence 999999998753
No 108
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.07 E-value=9.5e-10 Score=121.41 Aligned_cols=151 Identities=20% Similarity=0.201 Sum_probs=89.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCC-CCCCC--CCccchhhHHHHhhcCccchhhchhhh--
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPC-NPAVG--GPAKSQLVHEVDALGGEIGKVADMCYL-- 150 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c-~~s~G--g~~~~~l~~el~~lg~~~~~~~d~~~i-- 150 (699)
.+|||+|||||++|+++|+.|++.|++|+|+|+.... ....+ .+... .+. ....+.++.+|-. ..+......
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~-~~~~~~~~~~r~~~l~-~~~~~~l~~lGl~-~~~~~~~~~~~ 80 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPA-PFDADSQPDVRISAIS-AASVALLKGLGVW-DAVQAMRSHPY 80 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCC-cccccCCCCceEEecc-HHHHHHHHHcCCh-hhhhhhhCccc
Confidence 4599999999999999999999999999999985211 00000 00000 111 1122333444311 100000000
Q ss_pred ---------hHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEec
Q 048823 151 ---------QKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYA 220 (699)
Q Consensus 151 ---------~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~A 220 (699)
...+...............+++..+...|.+.+.+.++++++ ++.|+++..+ ++ .+.|.+.+|.+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~-~~~v~~~~g~~~~a 158 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRD-DD-GWELTLADGEEIQA 158 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CC-eEEEEECCCCEEEe
Confidence 000000000000001112457778889999988887789987 6899998765 33 35677888889999
Q ss_pred CeEEEecCCCC
Q 048823 221 PSVVLTTGTFM 231 (699)
Q Consensus 221 d~VVlAtG~~~ 231 (699)
|.||.|+|.++
T Consensus 159 ~~vI~AdG~~S 169 (391)
T PRK08020 159 KLVIGADGANS 169 (391)
T ss_pred CEEEEeCCCCc
Confidence 99999999985
No 109
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.07 E-value=1.3e-09 Score=122.56 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=86.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..|||+|||||+||+++|+.|++.|++|+|+|+... ....|.. ++.. ... +.++- ........-...++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~--~~k~cgg---~i~~-~~l---~~lgl-~~~~~~~~i~~~~~~ 107 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD--NAKPCGG---AIPL-CMV---GEFDL-PLDIIDRKVTKMKMI 107 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC--CCCCccc---cccH-hHH---hhhcC-cHHHHHHHhhhheEe
Confidence 459999999999999999999999999999999632 1223432 2221 222 22221 111111000001111
Q ss_pred ccCCCccc--------cccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecC-CCCEEEEEEcC-------c--cE
Q 048823 156 NTSRGPAV--------WALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGK-NDNVEGVCTFF-------G--MN 217 (699)
Q Consensus 156 ~~s~g~~~--------~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~-~g~v~gV~t~d-------G--~~ 217 (699)
..+ +..+ ...-..+++..|.+.|.+.+.+. |++++.+.++++..+. ++..+.|.+.+ | .+
T Consensus 108 ~p~-~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~-Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~ 185 (450)
T PLN00093 108 SPS-NVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSN-GATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT 185 (450)
T ss_pred cCC-ceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHC-CCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence 100 0000 00111369999999999999886 8898877788876431 12334454422 3 47
Q ss_pred EecCeEEEecCCCC
Q 048823 218 FYAPSVVLTTGTFM 231 (699)
Q Consensus 218 i~Ad~VVlAtG~~~ 231 (699)
++||.||.|+|..+
T Consensus 186 v~a~~VIgADG~~S 199 (450)
T PLN00093 186 LEVDAVIGADGANS 199 (450)
T ss_pred EEeCEEEEcCCcch
Confidence 99999999999874
No 110
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.07 E-value=8.6e-10 Score=121.60 Aligned_cols=138 Identities=18% Similarity=0.126 Sum_probs=86.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhc--Ccc-chhhchhhhhHHhh
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALG--GEI-GKVADMCYLQKRVL 155 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg--~~~-~~~~d~~~i~~~~~ 155 (699)
||+|||||+||+++|+.|++.|++|+|||++.. .+... ..+... ..++.++ ... ..+.....+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~-~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--- 68 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP-IPGNH----TYGVWD----DDLSDLGLADCVEHVWPDVYEYRF--- 68 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC-CCCCc----cccccH----hhhhhhchhhHHhhcCCCceEEec---
Confidence 899999999999999999999999999998632 22110 011111 1111111 000 00000000000
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.............+++..+.+.+.+.+.+. +++++.+.|+++..+ ++..+.|.+.+|.+++|+.||+|+|.++
T Consensus 69 -~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~-gv~~~~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 69 -PKQPRKLGTAYGSVDSTRLHEELLQKCPEG-GVLWLERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred -CCcchhcCCceeEEcHHHHHHHHHHHHHhc-CcEEEccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 000000011112468889999999999887 888888889988754 3566778888888899999999999874
No 111
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.07 E-value=8.5e-10 Score=121.68 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=89.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecc-cccCCCCCCCCCCC-ccchhhHHHHhhcCccchhhchh--hh-h
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNID-KIAWQPCNPAVGGP-AKSQLVHEVDALGGEIGKVADMC--YL-Q 151 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~-~~g~~~c~~s~Gg~-~~~~l~~el~~lg~~~~~~~d~~--~i-~ 151 (699)
.+||+|||||++|+++|+.|++.|++|+|+|+... ......+ ...++. ......+-++.+|-. ..+.... .+ .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~-~~~r~~~l~~~~~~~L~~lG~~-~~~~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQP-MDIRVSAISQTSVDLLESLGAW-SSIVAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCC-CCccEEEecHHHHHHHHHCCCc-hhhhHhhCCccce
Confidence 48999999999999999999999999999998521 1110001 011111 112233444555421 1110000 00 0
Q ss_pred HHhhccCCC-------c-cccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCe
Q 048823 152 KRVLNTSRG-------P-AVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPS 222 (699)
Q Consensus 152 ~~~~~~s~g-------~-~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~ 222 (699)
......... . ........+.+..+...|.+.+...++++++ .++|+++..+ ++. +.|++.+|.+++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~-~~~-~~v~~~~g~~~~~~l 158 (384)
T PRK08849 81 LETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFS-AEG-NRVTLESGAEIEAKW 158 (384)
T ss_pred EEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEc-CCe-EEEEECCCCEEEeeE
Confidence 000000000 0 0000011233446777888888877889987 6999999875 333 458888999999999
Q ss_pred EEEecCCCCCCc
Q 048823 223 VVLTTGTFMSGK 234 (699)
Q Consensus 223 VVlAtG~~~~~~ 234 (699)
||.|+|..|..+
T Consensus 159 vIgADG~~S~vR 170 (384)
T PRK08849 159 VIGADGANSQVR 170 (384)
T ss_pred EEEecCCCchhH
Confidence 999999986443
No 112
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.07 E-value=9.5e-10 Score=122.08 Aligned_cols=153 Identities=19% Similarity=0.139 Sum_probs=89.5
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCC--C-CCCCCCCccchhhHHHHhhcCccc-----------
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQP--C-NPAVGGPAKSQLVHEVDALGGEIG----------- 142 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~--c-~~s~Gg~~~~~l~~el~~lg~~~~----------- 142 (699)
.+||+|||||++|+++|+.|++.|++|+|+|+......... + ....+........+-++.+|-...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 48999999999999999999999999999998631101000 0 000111111122333444431100
Q ss_pred -hhhchhhhhHHhhccCCCc-cccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEe
Q 048823 143 -KVADMCYLQKRVLNTSRGP-AVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFY 219 (699)
Q Consensus 143 -~~~d~~~i~~~~~~~s~g~-~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~ 219 (699)
.+.+..+. ......... ........+++..+.+.|.+.+.+. +++++ +++|+++..+ ++. +.|++.+|.++.
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~-~~~-v~v~~~~g~~~~ 156 (405)
T PRK05714 82 MQVWDGSGT--GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDS-DIGLLANARLEQMRRS-GDD-WLLTLADGRQLR 156 (405)
T ss_pred EEEEcCCCC--ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcC-CCEEEcCCEEEEEEEc-CCe-EEEEECCCCEEE
Confidence 00010000 000000000 0001112356677888888888876 78887 6899999765 333 457788888899
Q ss_pred cCeEEEecCCCCCCc
Q 048823 220 APSVVLTTGTFMSGK 234 (699)
Q Consensus 220 Ad~VVlAtG~~~~~~ 234 (699)
||.||.|+|.++..+
T Consensus 157 a~~vVgAdG~~S~vR 171 (405)
T PRK05714 157 APLVVAADGANSAVR 171 (405)
T ss_pred eCEEEEecCCCchhH
Confidence 999999999986433
No 113
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.07 E-value=1.5e-09 Score=121.94 Aligned_cols=152 Identities=25% Similarity=0.239 Sum_probs=87.5
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CceeEEeeecccccCCCCCCCCCCCcc---------------chhhHHHHhhcCc--
Q 048823 79 DVIVVGGGHAGCEAALASARLG-AKTLLLTLNIDKIAWQPCNPAVGGPAK---------------SQLVHEVDALGGE-- 140 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~~~~~~g~~~c~~s~Gg~~~---------------~~l~~el~~lg~~-- 140 (699)
||||||||.+|++||+.|++.| .+|+|||+.....+. +..+.|+... ..+.+.+...+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~--s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 78 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN--SAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIN 78 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc--ccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 8999999999999999999999 999999996221111 1111111110 0111111111100
Q ss_pred ----cchhhchhhhhHHhhccC-----------CCccc---ccc-ccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEE
Q 048823 141 ----IGKVADMCYLQKRVLNTS-----------RGPAV---WAL-RAQTDKREYAMRMKNIVESTANLCIR-EAMVTDIL 200 (699)
Q Consensus 141 ----~~~~~d~~~i~~~~~~~s-----------~g~~~---~~~-r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~ 200 (699)
...+.+.......|+... .+... ..+ ....+...+...|.+.+++. +++++ ++.|++|.
T Consensus 79 ~~~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-gv~i~~~~~v~~l~ 157 (439)
T TIGR01813 79 DPELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKE-GIDTRLNSKVEDLI 157 (439)
T ss_pred CHHHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHc-CCEEEeCCEeeEeE
Confidence 001111111112222200 00000 000 01124457888888888886 78887 69999998
Q ss_pred ecCCCCEEEEEEc--Ccc--EEecCeEEEecCCCCCC
Q 048823 201 LGKNDNVEGVCTF--FGM--NFYAPSVVLTTGTFMSG 233 (699)
Q Consensus 201 ~e~~g~v~gV~t~--dG~--~i~Ad~VVlAtG~~~~~ 233 (699)
.+++++++||++. ++. .+.+|.||+|||+|+.+
T Consensus 158 ~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n 194 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSN 194 (439)
T ss_pred ECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCC
Confidence 8646789888764 343 47899999999999764
No 114
>PRK09126 hypothetical protein; Provisional
Probab=99.07 E-value=1e-09 Score=121.20 Aligned_cols=152 Identities=22% Similarity=0.209 Sum_probs=89.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCC-CCC-C-ccchhhHHHHhhcCccchhhchhh--h-
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPA-VGG-P-AKSQLVHEVDALGGEIGKVADMCY--L- 150 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s-~Gg-~-~~~~l~~el~~lg~~~~~~~d~~~--i- 150 (699)
++||+|||||++|+++|+.|++.|++|+|+|+....- .+.+. .|. + ......+.++.+|- ...+.+... .
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~---~~~~~~~g~~i~l~~~~~~~L~~lGl-~~~~~~~~~~~~~ 78 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA---LADPAFDGREIALTHASREILQRLGA-WDRIPEDEISPLR 78 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc---ccCCCCchhHHHhhHHHHHHHHHCCC-hhhhccccCCccc
Confidence 5899999999999999999999999999999952210 00011 111 1 11123344455542 111100000 0
Q ss_pred hHHhhcc---------CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEec
Q 048823 151 QKRVLNT---------SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYA 220 (699)
Q Consensus 151 ~~~~~~~---------s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~A 220 (699)
...+... ............+.+..+.+.+.+.+.+.+|++++ +++|+++..+ ++ .+.|.+.+|.++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~-~~~v~~~~g~~~~a 156 (392)
T PRK09126 79 DAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DD-GAQVTLANGRRLTA 156 (392)
T ss_pred eEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CC-eEEEEEcCCCEEEe
Confidence 0000000 00000000111235566777777777666689987 6899999764 33 45678888889999
Q ss_pred CeEEEecCCCCCCc
Q 048823 221 PSVVLTTGTFMSGK 234 (699)
Q Consensus 221 d~VVlAtG~~~~~~ 234 (699)
|.||.|+|.++..+
T Consensus 157 ~~vI~AdG~~S~vr 170 (392)
T PRK09126 157 RLLVAADSRFSATR 170 (392)
T ss_pred CEEEEeCCCCchhh
Confidence 99999999876433
No 115
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.06 E-value=1.1e-09 Score=121.90 Aligned_cols=151 Identities=19% Similarity=0.150 Sum_probs=85.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCC-ccchhhHHHHhhcCccchh--------
Q 048823 74 IDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGP-AKSQLVHEVDALGGEIGKV-------- 144 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~-~~~~l~~el~~lg~~~~~~-------- 144 (699)
.+..+||+|||||++|+++|+.|++.|++|+|+|+.... ....+ -.+. ......+-++.+|- ...+
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~-~~~~~---g~~~~l~~~~~~~L~~lGl-~~~l~~~~~~~~ 89 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE-AAAAK---GQAYALSLLSARIFEGIGV-WEKILPQIGKFR 89 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc-ccCCC---CcEEEechHHHHHHHHCCh-hhhhHhhcCCcc
Confidence 345699999999999999999999999999999996221 10000 0011 11122233333331 1110
Q ss_pred ----hchhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC-c--c
Q 048823 145 ----ADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF-G--M 216 (699)
Q Consensus 145 ----~d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d-G--~ 216 (699)
.+..+.....+....... ........+..+.+.|.+.+.+.++++++ +++|+++..+ ++. +.|++.+ + .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~-~~~-~~v~~~~~~~~~ 166 (415)
T PRK07364 90 QIRLSDADYPGVVKFQPTDLGT-EALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQ-QDA-ATVTLEIEGKQQ 166 (415)
T ss_pred EEEEEeCCCCceeeeccccCCC-CccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCe-eEEEEccCCcce
Confidence 010000000000000000 00001123335777888888887789987 7999999765 333 3455543 2 3
Q ss_pred EEecCeEEEecCCCCC
Q 048823 217 NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 217 ~i~Ad~VVlAtG~~~~ 232 (699)
+++||.||.|+|.++.
T Consensus 167 ~i~adlvIgADG~~S~ 182 (415)
T PRK07364 167 TLQSKLVVAADGARSP 182 (415)
T ss_pred EEeeeEEEEeCCCCch
Confidence 6999999999999864
No 116
>PRK06185 hypothetical protein; Provisional
Probab=99.06 E-value=1.1e-09 Score=121.58 Aligned_cols=149 Identities=24% Similarity=0.254 Sum_probs=89.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhc-----hhhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVAD-----MCYL 150 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d-----~~~i 150 (699)
.++||+|||||++|+++|+.|++.|++|+|+|+.... ....+ +........+-++.+|-. ..+.. ...+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~-~~~~r----~~~l~~~s~~~L~~lG~~-~~~~~~~~~~~~~~ 78 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF-LRDFR----GDTVHPSTLELMDELGLL-ERFLELPHQKVRTL 78 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-Ccccc----CceeChhHHHHHHHcCCh-hHHhhcccceeeeE
Confidence 4599999999999999999999999999999985211 10011 111111122333333321 11100 0000
Q ss_pred hH-------HhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE--cCcc-EEe
Q 048823 151 QK-------RVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT--FFGM-NFY 219 (699)
Q Consensus 151 ~~-------~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t--~dG~-~i~ 219 (699)
++ .................+.+..+.+.|.+.+.+.++++++ ++.|+++..+ ++++.+|.+ .+|. +++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~ 157 (407)
T PRK06185 79 RFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIR 157 (407)
T ss_pred EEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEE
Confidence 00 0000000000001112346667888888888877789987 6999999876 567766664 3564 799
Q ss_pred cCeEEEecCCCC
Q 048823 220 APSVVLTTGTFM 231 (699)
Q Consensus 220 Ad~VVlAtG~~~ 231 (699)
||.||.|+|.++
T Consensus 158 a~~vI~AdG~~S 169 (407)
T PRK06185 158 ADLVVGADGRHS 169 (407)
T ss_pred eCEEEECCCCch
Confidence 999999999985
No 117
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.05 E-value=1.4e-09 Score=119.94 Aligned_cols=151 Identities=23% Similarity=0.234 Sum_probs=87.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHc---CCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhch-----
Q 048823 76 ERFDVIVVGGGHAGCEAALASARL---GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADM----- 147 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~---G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~----- 147 (699)
..+||+|||||++|+++|+.|++. |++|+|+|+........++....+........+.++.+|- +..+.+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl-~~~~~~~~~~~~ 80 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGV-WQALADCATPIT 80 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCC-hhhhHhhcCCcc
Confidence 358999999999999999999998 9999999994111000000000011111111233333331 1111100
Q ss_pred -------hhhhHHhhc-cCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEE
Q 048823 148 -------CYLQKRVLN-TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNF 218 (699)
Q Consensus 148 -------~~i~~~~~~-~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i 218 (699)
.......+. ...+ .......+++..+.+.|.+.+.+.++++++ +++|+++..+ ++ .+.|++.+|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~-~~~v~~~~g~~~ 156 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYG--VPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QG-SVRVTLDDGETL 156 (395)
T ss_pred EEEEecCCCCceEEeehhhcC--CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CC-eEEEEECCCCEE
Confidence 000000000 0000 000111346667788888888887789987 6999999754 33 345788888889
Q ss_pred ecCeEEEecCCCC
Q 048823 219 YAPSVVLTTGTFM 231 (699)
Q Consensus 219 ~Ad~VVlAtG~~~ 231 (699)
.||.||+|+|.++
T Consensus 157 ~a~~vI~AdG~~S 169 (395)
T PRK05732 157 TGRLLVAADGSHS 169 (395)
T ss_pred EeCEEEEecCCCh
Confidence 9999999999985
No 118
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.05 E-value=9.5e-10 Score=120.87 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=90.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCc-cchhhHHHHhhcCc---------cch--hh
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPA-KSQLVHEVDALGGE---------IGK--VA 145 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~-~~~l~~el~~lg~~---------~~~--~~ 145 (699)
+||+|||||++|+++|+.|++.|++|+|+|+....... ..+...+.. .....+-++.+|-. +.. +.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~--~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 79 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPE--FFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVV 79 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCc--cCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEE
Confidence 79999999999999999999999999999985211000 000111111 11222333333311 000 00
Q ss_pred chhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEE
Q 048823 146 DMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVV 224 (699)
Q Consensus 146 d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VV 224 (699)
+..+...-.+... . .......+++..+.+.|.+.+.+.++++++ .++|+++..+ ++. +.|.+.++ +++||.||
T Consensus 80 ~~~g~~~~~~~~~-~--~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~-v~v~~~~~-~~~adlvI 153 (374)
T PRK06617 80 DNKASEILDLRND-A--DAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISH-NDY-SIIKFDDK-QIKCNLLI 153 (374)
T ss_pred ECCCceEEEecCC-C--CCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCe-EEEEEcCC-EEeeCEEE
Confidence 1100000000000 0 001122467889999999999998788887 6999999765 343 44777776 89999999
Q ss_pred EecCCCCCCc
Q 048823 225 LTTGTFMSGK 234 (699)
Q Consensus 225 lAtG~~~~~~ 234 (699)
.|+|.+|..+
T Consensus 154 gADG~~S~vR 163 (374)
T PRK06617 154 ICDGANSKVR 163 (374)
T ss_pred EeCCCCchhH
Confidence 9999987544
No 119
>PRK06847 hypothetical protein; Provisional
Probab=99.04 E-value=2.3e-09 Score=117.57 Aligned_cols=150 Identities=19% Similarity=0.102 Sum_probs=89.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchh-----------
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKV----------- 144 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~----------- 144 (699)
+..||+|||||++|+++|+.|++.|++|+|+|+... .....+ |........+.++.+|-. ..+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~~g~----g~~l~~~~~~~l~~~gl~-~~~~~~~~~~~~~~ 76 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE-WRVYGA----GITLQGNALRALRELGVL-DECLEAGFGFDGVD 76 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC-CccCCc----eeeecHHHHHHHHHcCCH-HHHHHhCCCccceE
Confidence 357899999999999999999999999999998522 111000 101111222333333311 000
Q ss_pred -hchhhhhHHhhcc-CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecC
Q 048823 145 -ADMCYLQKRVLNT-SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAP 221 (699)
Q Consensus 145 -~d~~~i~~~~~~~-s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad 221 (699)
.+..+........ ............+++..+.+.|.+.+.+. +++++ ++.|+++..+ + ..+.|.+.+|+++.||
T Consensus 77 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~-~-~~~~v~~~~g~~~~ad 153 (375)
T PRK06847 77 LFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAA-GADVRLGTTVTAIEQD-D-DGVTVTFSDGTTGRYD 153 (375)
T ss_pred EECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHh-CCEEEeCCEEEEEEEc-C-CEEEEEEcCCCEEEcC
Confidence 0000000000000 00000000112457788889999988876 78876 6899999764 3 3356778889899999
Q ss_pred eEEEecCCCCCCc
Q 048823 222 SVVLTTGTFMSGK 234 (699)
Q Consensus 222 ~VVlAtG~~~~~~ 234 (699)
.||+|+|.++..+
T Consensus 154 ~vI~AdG~~s~~r 166 (375)
T PRK06847 154 LVVGADGLYSKVR 166 (375)
T ss_pred EEEECcCCCcchh
Confidence 9999999986544
No 120
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.04 E-value=1.7e-09 Score=124.78 Aligned_cols=35 Identities=46% Similarity=0.491 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeec
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNI 110 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~ 110 (699)
.++||||||+|.||++||+.+++.|++|+|||+..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999999999999999999999999999964
No 121
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.04 E-value=1.8e-09 Score=119.34 Aligned_cols=151 Identities=21% Similarity=0.178 Sum_probs=88.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCc-cchhhHHHHhhcCccchhhchhhhhH--
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPA-KSQLVHEVDALGGEIGKVADMCYLQK-- 152 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~-~~~l~~el~~lg~~~~~~~d~~~i~~-- 152 (699)
..+||+|||||++|+++|+.|++.|++|+|||+... .....+.+...... .....+-++.+|-. ..+.......+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~-~~~~~~~~~~r~~~l~~~~~~~l~~lGl~-~~~~~~~~~~~~~ 82 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREP-PRWQADQPDLRVYAFAADNAALLDRLGVW-PAVRAARAQPYRR 82 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC-cccccCCCCCEEEEecHHHHHHHHHCCch-hhhhHhhCCcccE
Confidence 458999999999999999999999999999999621 11111111100000 01112223334311 11100000000
Q ss_pred -HhhccCCC---------ccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecC
Q 048823 153 -RVLNTSRG---------PAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAP 221 (699)
Q Consensus 153 -~~~~~s~g---------~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad 221 (699)
.+.....+ .........+++..+.+.|.+.+.+. |++++ ++.|+++..+ ++. +.|++.+|.++.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~a~ 159 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAA-GVQLHCPARVVALEQD-ADR-VRLRLDDGRRLEAA 159 (392)
T ss_pred EEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeEEEEEec-CCe-EEEEECCCCEEEeC
Confidence 00000000 00001112457788899999988886 88887 6899999865 343 45778888889999
Q ss_pred eEEEecCCCC
Q 048823 222 SVVLTTGTFM 231 (699)
Q Consensus 222 ~VVlAtG~~~ 231 (699)
.||+|+|.++
T Consensus 160 ~vV~AdG~~S 169 (392)
T PRK08773 160 LAIAADGAAS 169 (392)
T ss_pred EEEEecCCCc
Confidence 9999999984
No 122
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.4e-09 Score=106.51 Aligned_cols=122 Identities=23% Similarity=0.232 Sum_probs=86.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhc
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLN 156 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~ 156 (699)
.-.|+|||.|+|+-.||+.+++.-++.+|+|- +|-.+...||... ...+++++.++..
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG------~~~~~i~pGGQLt--TTT~veNfPGFPd-------------- 65 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEG------MMANGIAPGGQLT--TTTDVENFPGFPD-------------- 65 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEee------eeccCcCCCceee--eeeccccCCCCCc--------------
Confidence 34799999999999999999999999999995 2222222233210 1122333322211
Q ss_pred cCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCCCcee
Q 048823 157 TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIW 236 (699)
Q Consensus 157 ~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~~~~~ 236 (699)
.+....+++.|++...+. |.+++...|.++... ++.+.|.++.+ .+.||.||+|||+- +.+++
T Consensus 66 ------------gi~G~~l~d~mrkqs~r~-Gt~i~tEtVskv~~s--skpF~l~td~~-~v~~~avI~atGAs-AkRl~ 128 (322)
T KOG0404|consen 66 ------------GITGPELMDKMRKQSERF-GTEIITETVSKVDLS--SKPFKLWTDAR-PVTADAVILATGAS-AKRLH 128 (322)
T ss_pred ------------ccccHHHHHHHHHHHHhh-cceeeeeehhhcccc--CCCeEEEecCC-ceeeeeEEEecccc-eeeee
Confidence 234457889999999998 999999899999874 67777777544 79999999999985 45555
Q ss_pred e
Q 048823 237 V 237 (699)
Q Consensus 237 ~ 237 (699)
+
T Consensus 129 ~ 129 (322)
T KOG0404|consen 129 L 129 (322)
T ss_pred c
Confidence 3
No 123
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.03 E-value=2.8e-09 Score=121.83 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=48.0
Q ss_pred ccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC---cc--EEecCeEEEecCCCC
Q 048823 167 RAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF---GM--NFYAPSVVLTTGTFM 231 (699)
Q Consensus 167 r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d---G~--~i~Ad~VVlAtG~~~ 231 (699)
.+++|+..+...+...+.+. |++++ +++|+++..+ +..++|.+.+ |+ +++|+.||+|+|.|+
T Consensus 149 dg~vd~~rl~~~l~~~A~~~-Ga~i~~~~~V~~i~~~--~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 149 DCWVDDARLVVLNARDAAER-GAEILTRTRVVSARRE--NGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred CcccCHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEe--CCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 34678888888888888776 78887 5899999764 4456777654 43 789999999999994
No 124
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.03 E-value=2.8e-09 Score=109.88 Aligned_cols=34 Identities=44% Similarity=0.515 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..+||||||+|.||+.||..||..|.+|+++|+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQE 37 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQE 37 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence 3589999999999999999999999999999986
No 125
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.03 E-value=2e-09 Score=124.73 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=43.8
Q ss_pred HHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC-cc--EEecC-eEEEecCCCCCCc
Q 048823 176 AMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF-GM--NFYAP-SVVLTTGTFMSGK 234 (699)
Q Consensus 176 ~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d-G~--~i~Ad-~VVlAtG~~~~~~ 234 (699)
...|.+.+++ .+++++ ++.|++|+.+++|+|+||.... |. .+.|+ .||+|||+|.++.
T Consensus 216 ~~~l~~~~~~-~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~ 278 (584)
T PRK12835 216 VARLRLALKD-AGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDM 278 (584)
T ss_pred HHHHHHHHHh-CCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCH
Confidence 3445566655 489987 7999999987568999987643 33 57887 6999999998654
No 126
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.03 E-value=1.7e-09 Score=118.82 Aligned_cols=148 Identities=25% Similarity=0.236 Sum_probs=88.3
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CceeEEeeecccccCCCCCCCC-CCCccchhhHHHHhhcCccchhhchhh-h-hHHh
Q 048823 79 DVIVVGGGHAGCEAALASARLG-AKTLLLTLNIDKIAWQPCNPAV-GGPAKSQLVHEVDALGGEIGKVADMCY-L-QKRV 154 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~~~~~~g~~~c~~s~-Gg~~~~~l~~el~~lg~~~~~~~d~~~-i-~~~~ 154 (699)
||+|||||++|+++|+.|++.| ++|+|+|+...... ..|.... .++.. ...+.++.+|-. ..+..... . ...+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~-~~~~~~~~~~l~~-~~~~~l~~lgl~-~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAA-QPGFDARSLALSY-GSKQILEKLGLW-PKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcccc-CCCCCCeeEeccH-HHHHHHHHCCCh-hhhHhhcCccceEEE
Confidence 7999999999999999999999 99999999622111 1110000 01111 122334444311 11100000 0 0000
Q ss_pred hcc-CCCc--------cccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEE
Q 048823 155 LNT-SRGP--------AVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVV 224 (699)
Q Consensus 155 ~~~-s~g~--------~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VV 224 (699)
... ..+. ........+++..+.+.|.+.+.+.+|++++ +++|+++..+ ++. +.|.+.+|.++.||.||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~-~~v~~~~g~~~~ad~vV 155 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDY-VRVTLDNGQQLRAKLLI 155 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCe-EEEEECCCCEEEeeEEE
Confidence 000 0000 0000112367888999999999876689987 7999999765 333 45777888889999999
Q ss_pred EecCCCC
Q 048823 225 LTTGTFM 231 (699)
Q Consensus 225 lAtG~~~ 231 (699)
.|+|.++
T Consensus 156 ~AdG~~S 162 (382)
T TIGR01984 156 AADGANS 162 (382)
T ss_pred EecCCCh
Confidence 9999874
No 127
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.03 E-value=1.6e-09 Score=119.01 Aligned_cols=148 Identities=21% Similarity=0.150 Sum_probs=88.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCC-ccchhhHHHHhhcCccchhh------------
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGP-AKSQLVHEVDALGGEIGKVA------------ 145 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~-~~~~l~~el~~lg~~~~~~~------------ 145 (699)
||+|||||++|+++|+.|++.|++|+|+|+.... ....|.....+. ......+.++.+|-. ....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~-~~~~~~~~~~~~~l~~~~~~~l~~lGl~-~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE-AAATPGFDNRVSALSAASIRLLEKLGVW-DKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc-ccCCCCCCcceeecCHHHHHHHHHCCch-hhhhhhcCCCceEEEE
Confidence 7999999999999999999999999999996321 111110011111 111122333334311 0000
Q ss_pred -chhh-hhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCe
Q 048823 146 -DMCY-LQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPS 222 (699)
Q Consensus 146 -d~~~-i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~ 222 (699)
+..+ ....+.....+. ......+++..+.+.|.+.+.+.++++++ +++|+++..+ ++. +.|.+.+|.++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~~~ 154 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGL--EALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDH-VELTLDDGQQLRARL 154 (385)
T ss_pred EeCCCCceEEechhhcCC--CccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCe-eEEEECCCCEEEeeE
Confidence 0000 000000000000 00012356778899999999887668887 6899999865 343 457888998999999
Q ss_pred EEEecCCCCC
Q 048823 223 VVLTTGTFMS 232 (699)
Q Consensus 223 VVlAtG~~~~ 232 (699)
||.|+|.++.
T Consensus 155 vi~adG~~S~ 164 (385)
T TIGR01988 155 LVGADGANSK 164 (385)
T ss_pred EEEeCCCCCH
Confidence 9999999853
No 128
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.02 E-value=1.1e-09 Score=124.19 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=77.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKR 153 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~ 153 (699)
..|||+|||||+||++||+.|++.|++|+|+|++ .++|.+.+|.|+..-....+..+.+..... ++.......+++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~-~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASP-FGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHh-cCccCCCCccCHH
Confidence 4699999999999999999999999999999984 223333444443221111111111111000 0000000000000
Q ss_pred hhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEec---CCCCEEEEEEcCc--cEEecCeEEEecC
Q 048823 154 VLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLG---KNDNVEGVCTFFG--MNFYAPSVVLTTG 228 (699)
Q Consensus 154 ~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e---~~g~v~gV~t~dG--~~i~Ad~VVlAtG 228 (699)
-+... . ..-...+...+.+.+++ .+++++...++.+..+ +.++.+.|.+.+| .++.+|.||+|||
T Consensus 82 ~~~~~--------~-~~~~~~l~~~~~~~~~~-~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATG 151 (472)
T PRK05976 82 KVQER--------K-DGIVDRLTKGVAALLKK-GKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATG 151 (472)
T ss_pred HHHHH--------H-HHHHHHHHHHHHHHHHh-CCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCC
Confidence 00000 0 00001122233344444 4899998888876421 0122456777777 4799999999999
Q ss_pred CCC
Q 048823 229 TFM 231 (699)
Q Consensus 229 ~~~ 231 (699)
+..
T Consensus 152 s~p 154 (472)
T PRK05976 152 SRP 154 (472)
T ss_pred CCC
Confidence 863
No 129
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.02 E-value=1.9e-09 Score=121.04 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=91.3
Q ss_pred ccEEEECCChHHHHHHHHHHH----cCCceeEEeeec--cccc--C-CCCC-CCCCCCc-cchhhHHHHhhcCccchhh-
Q 048823 78 FDVIVVGGGHAGCEAALASAR----LGAKTLLLTLNI--DKIA--W-QPCN-PAVGGPA-KSQLVHEVDALGGEIGKVA- 145 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr----~G~kV~LlE~~~--~~~g--~-~~c~-~s~Gg~~-~~~l~~el~~lg~~~~~~~- 145 (699)
|||+|||||++|+++|+.|++ .|++|+|||+.. ...+ . ..|. ....+.+ .....+-++.+| .+..+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG-~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIG-AWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcC-chhhhhh
Confidence 799999999999999999999 899999999842 1110 0 0111 0011111 112223334433 111111
Q ss_pred ------------chhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccC--CeEEE-eeEEEEEEec-----CCC
Q 048823 146 ------------DMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTA--NLCIR-EAMVTDILLG-----KND 205 (699)
Q Consensus 146 ------------d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~--gv~i~-~~~V~~l~~e-----~~g 205 (699)
+.... .................+++..+...|.+.+.+.+ +++++ .++|+++..+ +++
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~ 157 (437)
T TIGR01989 80 DRIQPFGRMQVWDGCSL--ALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS 157 (437)
T ss_pred hcCCceeeEEEecCCCC--ceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC
Confidence 10000 00000000000111124567788899999888876 68887 6999999742 123
Q ss_pred CEEEEEEcCccEEecCeEEEecCCCCCCce
Q 048823 206 NVEGVCTFFGMNFYAPSVVLTTGTFMSGKI 235 (699)
Q Consensus 206 ~v~gV~t~dG~~i~Ad~VVlAtG~~~~~~~ 235 (699)
..+.|++.+|++++||.||.|+|.+|..+-
T Consensus 158 ~~v~v~~~~g~~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 158 NWVHITLSDGQVLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred CceEEEEcCCCEEEeeEEEEecCCCChhHH
Confidence 446688889999999999999999875443
No 130
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.02 E-value=1.9e-09 Score=125.78 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=51.5
Q ss_pred ccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecC-CCCEEEEEEc---Ccc--EEecCeEEEecCCCC
Q 048823 167 RAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGK-NDNVEGVCTF---FGM--NFYAPSVVLTTGTFM 231 (699)
Q Consensus 167 r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~-~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~ 231 (699)
.+++|+..+...+.+.+.+. |++++ +++|+++..++ ++++++|++. +|. ++.||.||+|+|+|+
T Consensus 226 Dg~vdp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 226 DGQMNDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred CcEEcHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 45679999999999999887 78887 58999998753 3678888763 343 689999999999994
No 131
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.02 E-value=5.4e-09 Score=118.34 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=51.7
Q ss_pred cccCHHHHHHHHHHHHHc----cC-CeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVES----TA-NLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~----~~-gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
..+|+..+...+.+.+++ .+ +++++ +++|++|..+ ++.++.|.+.+| ++.||.||+|+|+|+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 357999999999999988 53 27776 6999999875 467788999888 699999999999995
No 132
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.01 E-value=3.9e-09 Score=115.70 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=48.3
Q ss_pred ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 169 QTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 169 ~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.+++..+...+.+.+.+. |++++ +++|+++..+ ++ .+.|.+.+| .+.||.||+|+|+|+
T Consensus 145 ~v~p~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~-~~-~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 145 FLRPELAIKAHLRLAREA-GAELLFNEPVTAIEAD-GD-GVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred EEcHHHHHHHHHHHHHHC-CCEEECCCEEEEEEee-CC-eEEEEeCCC-EEEeeEEEEecCcch
Confidence 568888888888888775 88887 6899999875 34 456888888 799999999999984
No 133
>PRK06834 hypothetical protein; Provisional
Probab=99.01 E-value=2.9e-09 Score=121.02 Aligned_cols=148 Identities=16% Similarity=0.079 Sum_probs=88.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchh-h---hhH
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMC-Y---LQK 152 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~-~---i~~ 152 (699)
++||+|||||++|+++|+.|++.|++|+|||+....... .+-.+++. ....+-++.+|- ...+.+.. . ..+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~---~~Ra~~l~-~~s~~~L~~lGl-~~~l~~~~~~~~~~~~ 77 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV---GSRAGGLH-ARTLEVLDQRGI-ADRFLAQGQVAQVTGF 77 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC---CcceeeEC-HHHHHHHHHcCc-HHHHHhcCCcccccee
Confidence 489999999999999999999999999999985321100 01111221 222333444431 11111100 0 000
Q ss_pred H--hhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCC
Q 048823 153 R--VLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGT 229 (699)
Q Consensus 153 ~--~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~ 229 (699)
. .+.....+..+.....+....+.+.|.+.+++. +++++ +++|+++..+ ++. +.|++.+|.+++||.||.|+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~-~~~-v~v~~~~g~~i~a~~vVgADG~ 154 (488)
T PRK06834 78 AATRLDISDFPTRHNYGLALWQNHIERILAEWVGEL-GVPIYRGREVTGFAQD-DTG-VDVELSDGRTLRAQYLVGCDGG 154 (488)
T ss_pred eeEecccccCCCCCCccccccHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEc-CCe-EEEEECCCCEEEeCEEEEecCC
Confidence 0 000000010011111345567788888888886 78886 7999999875 333 4567778888999999999999
Q ss_pred CCC
Q 048823 230 FMS 232 (699)
Q Consensus 230 ~~~ 232 (699)
++.
T Consensus 155 ~S~ 157 (488)
T PRK06834 155 RSL 157 (488)
T ss_pred CCC
Confidence 853
No 134
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.01 E-value=7.6e-10 Score=119.31 Aligned_cols=147 Identities=22% Similarity=0.206 Sum_probs=82.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchh---h-hhH
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMC---Y-LQK 152 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~---~-i~~ 152 (699)
+|||+|||||++|+++|+.|++.|++|+|+|+.... ...+| |........+.++.+| ....+.+.. . ...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~-~~~~~----~~~l~~~~~~~l~~lg-l~~~~~~~~~~~~~~~~ 74 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP-RPKGR----GIGLSPNSLRILQRLG-LLDEILARGSPHEVMRI 74 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC-CCSSS----SEEEEHHHHHHHHHTT-EHHHHHHHSEEECEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc-ccccc----cccccccccccccccc-chhhhhhhcccccceee
Confidence 489999999999999999999999999999995221 11111 1111122233344333 111100000 0 000
Q ss_pred Hhhcc---------------CCC-ccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc--
Q 048823 153 RVLNT---------------SRG-PAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF-- 213 (699)
Q Consensus 153 ~~~~~---------------s~g-~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~-- 213 (699)
.+... ... .........+++..+.+.|.+.+++. ++++. .++|+++..+ .+.+..+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d-~~~~~~~~~~~~ 152 (356)
T PF01494_consen 75 FFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEER-GVDIRFGTRVVSIEQD-DDGVTVVVRDGE 152 (356)
T ss_dssp EEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHH-TEEEEESEEEEEEEEE-TTEEEEEEEETC
T ss_pred EeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhh-hhhheeeeeccccccc-cccccccccccc
Confidence 00000 000 00001112357788999999999988 58886 6999998876 4444433322
Q ss_pred Ccc--EEecCeEEEecCCCC
Q 048823 214 FGM--NFYAPSVVLTTGTFM 231 (699)
Q Consensus 214 dG~--~i~Ad~VVlAtG~~~ 231 (699)
+|. +++||.||.|+|.+|
T Consensus 153 ~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 153 DGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp TCEEEEEEESEEEE-SGTT-
T ss_pred CCceeEEEEeeeecccCccc
Confidence 332 799999999999985
No 135
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.01 E-value=4e-09 Score=121.65 Aligned_cols=59 Identities=22% Similarity=0.168 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc-Ccc--EEec-CeEEEecCCCCCCc
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF-FGM--NFYA-PSVVLTTGTFMSGK 234 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~-dG~--~i~A-d~VVlAtG~~~~~~ 234 (699)
.+...|.+.+++. |++++ ++.|++|+.+ +++|+||... +|. .+.| +.||+|||+|..+.
T Consensus 218 ~l~~~L~~~~~~~-Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 218 ALAAGLFAGVLRA-GIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHHHHHHHHC-CCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 3455677777775 88887 6999999875 6899998654 343 4566 68999999998763
No 136
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.00 E-value=4e-09 Score=131.07 Aligned_cols=158 Identities=25% Similarity=0.314 Sum_probs=88.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCcc-c--------------hhhHHHHhhc-
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAK-S--------------QLVHEVDALG- 138 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~-~--------------~l~~el~~lg- 138 (699)
..++||||||+|.||++||+.+++.|++|+||||... .|. .+..+.|++.. + .+.++....+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~-~GG-~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~ 484 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK-LGG-NSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGK 484 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC-CCC-chhhcccccccCCchhhhhhcccccHHHHHHHHHHhcc
Confidence 3469999999999999999999999999999999632 221 11111222210 0 0111111111
Q ss_pred -Cc-----cchhhchhhhhHHhhcc----------CCCccc-cccc--ccc------CHHHHHHHHHHHHHcc--CCeEE
Q 048823 139 -GE-----IGKVADMCYLQKRVLNT----------SRGPAV-WALR--AQT------DKREYAMRMKNIVEST--ANLCI 191 (699)
Q Consensus 139 -~~-----~~~~~d~~~i~~~~~~~----------s~g~~~-~~~r--~~~------d~~~~~~~L~~~l~~~--~gv~i 191 (699)
+. ...+.+...-...|+.. ..+... +... ... ....+...|.+.+++. .++++
T Consensus 485 ~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i 564 (1167)
T PTZ00306 485 GGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTI 564 (1167)
T ss_pred CCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEE
Confidence 10 01111222212222211 001000 0000 000 1244666777776653 58898
Q ss_pred E-eeEEEEEEecCC--------CCEEEEEEc-----Ccc--EEecCeEEEecCCCCCCc
Q 048823 192 R-EAMVTDILLGKN--------DNVEGVCTF-----FGM--NFYAPSVVLTTGTFMSGK 234 (699)
Q Consensus 192 ~-~~~V~~l~~e~~--------g~v~gV~t~-----dG~--~i~Ad~VVlAtG~~~~~~ 234 (699)
+ ++.|++|+.+++ ++|+||... +|+ .+.|+.||+|||+|.++.
T Consensus 565 ~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 565 MTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDH 623 (1167)
T ss_pred EECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCc
Confidence 7 699999997631 279999875 454 688999999999998764
No 137
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.99 E-value=4.5e-09 Score=116.27 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=48.8
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
+++|+..+...|.+.+++. |++++ +++|+++..+ ++. +.|.+.+| ++.||.||+|+|.|+
T Consensus 144 g~vd~~~l~~aL~~~~~~~-Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQAR-GGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred eEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcch
Confidence 4568899999999999886 77876 6899998765 343 46778777 799999999999984
No 138
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.99 E-value=5.6e-09 Score=114.64 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=48.3
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
..+++..+...|.+.+++. |++++ +++|+++..+ ++. +.|.+.+| ++.||.||+|+|+|.
T Consensus 140 g~i~p~~~~~~l~~~~~~~-g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAH-GATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred cEEcHHHHHHHHHHHHHHc-CCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcch
Confidence 3568889999999988886 78887 5899999865 343 45777777 799999999999983
No 139
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.98 E-value=2.7e-09 Score=122.93 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=89.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhc----hhhhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVAD----MCYLQ 151 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d----~~~i~ 151 (699)
..+||+|||||++|+++|+.|++.|++|+|+|+...... .+. +........+-++.+|-. ..+.. .....
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~-~~r----a~~l~~~~~~~L~~lGl~-~~l~~~~~~~~~~~ 82 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD-LPR----AVGIDDEALRVLQAIGLA-DEVLPHTTPNHGMR 82 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC-CCc----eeeeCHHHHHHHHHcCCh-hHHHhhcccCCceE
Confidence 458999999999999999999999999999999622111 000 001111223333333311 00000 00000
Q ss_pred H-----Hhh---c-cCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc--Cc--cE
Q 048823 152 K-----RVL---N-TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF--FG--MN 217 (699)
Q Consensus 152 ~-----~~~---~-~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~--dG--~~ 217 (699)
+ ..+ . ...+...+.....+++..+.+.|.+.+.+.++++++ +++|+++..+ ++.+ .|++. +| .+
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~-~~~v-~v~~~~~~G~~~~ 160 (538)
T PRK06183 83 FLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQD-DDGV-TVTLTDADGQRET 160 (538)
T ss_pred EEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEc-CCeE-EEEEEcCCCCEEE
Confidence 0 000 0 001111122223456677888888888887889987 7999999876 3443 35544 56 47
Q ss_pred EecCeEEEecCCCCCCc
Q 048823 218 FYAPSVVLTTGTFMSGK 234 (699)
Q Consensus 218 i~Ad~VVlAtG~~~~~~ 234 (699)
++||.||.|+|.+|..+
T Consensus 161 i~ad~vVgADG~~S~vR 177 (538)
T PRK06183 161 VRARYVVGCDGANSFVR 177 (538)
T ss_pred EEEEEEEecCCCchhHH
Confidence 99999999999986444
No 140
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.98 E-value=5e-09 Score=119.92 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc-Ccc--EEecC-eEEEecCCCCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF-FGM--NFYAP-SVVLTTGTFMSG 233 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~-dG~--~i~Ad-~VVlAtG~~~~~ 233 (699)
.+...+.+.+.+.++++++ ++.|++|+.+ +++|+||... +|. .+.|+ .||+|||+|.++
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCC
Confidence 3555666666666689987 6999999886 7899998753 343 68885 899999999765
No 141
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.97 E-value=9.2e-10 Score=109.82 Aligned_cols=131 Identities=23% Similarity=0.202 Sum_probs=71.8
Q ss_pred EEECCChHHHHHHHHHHHcCCc-eeEEeeecccccCCCCCCCCCCCccchhhHHHHhhc--Cccc---hhhchhhhhHHh
Q 048823 81 IVVGGGHAGCEAALASARLGAK-TLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALG--GEIG---KVADMCYLQKRV 154 (699)
Q Consensus 81 vVIGgG~AGl~AA~~LAr~G~k-V~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg--~~~~---~~~d~~~i~~~~ 154 (699)
+|||||++|+++|+.|.+.|.+ |+|+|++ ...||..... .....+. .... ...+.....+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~----------~~~Gg~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN----------DRPGGVWRRY--YSYTRLHSPSFFSSDFGLPDFESFSFDD 68 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESS----------SSSTTHHHCH---TTTT-BSSSCCTGGSS--CCCHSCHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCC----------CCCCCeeEEe--CCCCccccCccccccccCCccccccccc
Confidence 6999999999999999999999 9999995 2333332100 0000000 0000 000000000000
Q ss_pred hccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 155 LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
. +.............+.+++...++++ ++.+. +++|+++..+ +++ +.|++.++.+++|+.||+|||.++
T Consensus 69 ~-----~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~i~~~~~V~~v~~~-~~~-w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 69 S-----PEWRWPHDFPSGEEVLDYLQEYAERF-GLEIRFNTRVESVRRD-GDG-WTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp H-----HHHHHSBSSEBHHHHHHHHHHHHHHT-TGGEETS--EEEEEEE-TTT-EEEEETTS-EEEEEEEEE---SSC
T ss_pred C-----CCCCCCcccCCHHHHHHHHHHHHhhc-CcccccCCEEEEEEEe-ccE-EEEEEEecceeeeeeEEEeeeccC
Confidence 0 00000111245667888888888887 77775 7999999987 444 889999998899999999999874
No 142
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.97 E-value=3.1e-08 Score=112.94 Aligned_cols=57 Identities=28% Similarity=0.266 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 173 REYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 173 ~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
..+.+.|.+.++++ |++++ ++.|++|..+ ++++.+|++.+|+++.||.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKH-GGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence 35678888888887 77776 7999999876 6889999999998899999999999874
No 143
>PRK11445 putative oxidoreductase; Provisional
Probab=98.97 E-value=7e-09 Score=113.06 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=87.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccc-hhh-chhhhhHHh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIG-KVA-DMCYLQKRV 154 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~-~~~-d~~~i~~~~ 154 (699)
+|||+|||||+||+++|+.|++. .+|+|+|+... ....+.....|+.......+.++.+|-... ... +......+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~-~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~ 78 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ-CGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKT 78 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc-cccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeE
Confidence 38999999999999999999999 99999998632 110110011233333445556666653211 110 000000000
Q ss_pred hccCC-Ccccc-ccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE-cCcc--EEecCeEEEecC
Q 048823 155 LNTSR-GPAVW-ALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT-FFGM--NFYAPSVVLTTG 228 (699)
Q Consensus 155 ~~~s~-g~~~~-~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t-~dG~--~i~Ad~VVlAtG 228 (699)
..... ....+ .....+++..|...|.+.+ . .+++++ ++.|+++..+ ++. +.|.+ .+|. +++||.||.|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~-~gv~v~~~~~v~~i~~~-~~~-~~v~~~~~g~~~~i~a~~vV~AdG 154 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKSLI-P-ASVEVYHNSLCRKIWRE-DDG-YHVIFRADGWEQHITARYLVGADG 154 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHHHH-h-cCCEEEcCCEEEEEEEc-CCE-EEEEEecCCcEEEEEeCEEEECCC
Confidence 00000 00001 0112478888988888754 3 368876 6889998765 333 44554 5664 689999999999
Q ss_pred CCCC
Q 048823 229 TFMS 232 (699)
Q Consensus 229 ~~~~ 232 (699)
..+.
T Consensus 155 ~~S~ 158 (351)
T PRK11445 155 ANSM 158 (351)
T ss_pred CCcH
Confidence 9853
No 144
>PRK06184 hypothetical protein; Provisional
Probab=98.96 E-value=4.2e-09 Score=120.31 Aligned_cols=146 Identities=15% Similarity=0.093 Sum_probs=85.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhh-----------
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVA----------- 145 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~----------- 145 (699)
++||+|||||++|+++|+.|++.|++|+|||+.... ...++. .++ .....+-++.+|-. ..+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~-~~~~ra---~~l-~~~~~e~l~~lGl~-~~l~~~~~~~~~~~~ 76 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP-FPGSRG---KGI-QPRTQEVFDDLGVL-DRVVAAGGLYPPMRI 76 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC-CcCccc---eee-cHHHHHHHHHcCcH-HHHHhcCccccceeE
Confidence 589999999999999999999999999999995221 111110 111 11222333333311 0000
Q ss_pred -chhh-h-hHHhhccCC--CccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE---cCcc
Q 048823 146 -DMCY-L-QKRVLNTSR--GPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT---FFGM 216 (699)
Q Consensus 146 -d~~~-i-~~~~~~~s~--g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t---~dG~ 216 (699)
+..+ + ...+..... ....+.....+.+..+.+.|.+.+.+. ++++. +++|+++..+ ++.+. |.+ .++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~-gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~~~ 153 (502)
T PRK06184 77 YRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAEL-GHRVEFGCELVGFEQD-ADGVT-ARVAGPAGEE 153 (502)
T ss_pred EeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHC-CCEEEeCcEEEEEEEc-CCcEE-EEEEeCCCeE
Confidence 0000 0 000000000 000001112345667888888888887 78876 6899999865 34443 333 4566
Q ss_pred EEecCeEEEecCCCC
Q 048823 217 NFYAPSVVLTTGTFM 231 (699)
Q Consensus 217 ~i~Ad~VVlAtG~~~ 231 (699)
+++||.||.|+|.++
T Consensus 154 ~i~a~~vVgADG~~S 168 (502)
T PRK06184 154 TVRARYLVGADGGRS 168 (502)
T ss_pred EEEeCEEEECCCCch
Confidence 899999999999985
No 145
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.96 E-value=5.4e-09 Score=114.32 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=46.0
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
..+|+..+...|.+.+.+..|++++ +++|+++. .+ .|.+.+| .++|+.||+|+|.|+
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~---~~---~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVE---TG---TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEe---cC---eEEeCCC-cEEeCEEEECCCCCh
Confidence 4578999999999888765588887 58999985 23 5778777 478999999999985
No 146
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=2.3e-08 Score=115.69 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE---cCcc--EEecCeEEEecCCCCCCceeecccccCC
Q 048823 171 DKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPA 244 (699)
Q Consensus 171 d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~ 244 (699)
....+...|.+.+.+. +++++ ++.+++|+.+++|+|+||.. .+|. .|.|+.||+|||++.. ++ .....+.
T Consensus 124 tG~~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~--~~-~~~~~~~ 199 (570)
T PRK05675 124 TGHALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR--IY-ASTTNAL 199 (570)
T ss_pred CHHHHHHHHHHHHhcc-CCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc--cc-CCCCCCC
Confidence 3567888888888765 89988 59999999754689999976 3554 6789999999999964 22 2234455
Q ss_pred CCcccccc
Q 048823 245 GRAGESAS 252 (699)
Q Consensus 245 gr~g~~~s 252 (699)
+..|+...
T Consensus 200 ~~tGDG~~ 207 (570)
T PRK05675 200 INTGDGVG 207 (570)
T ss_pred CcCcHHHH
Confidence 66666533
No 147
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.96 E-value=5.7e-09 Score=115.34 Aligned_cols=150 Identities=21% Similarity=0.198 Sum_probs=90.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchh-hh-hHHh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMC-YL-QKRV 154 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~-~i-~~~~ 154 (699)
..||+|||||++|+++|+.|++.|++|+|+|+... ....++ |-.......+-++.+|-.. ...... .. .+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~-~~~~g~----gi~l~~~~~~~l~~lg~~~-~~~~~~~~~~~~~~ 77 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE-IGEIGA----GIQLGPNAFSALDALGVGE-AARQRAVFTDHLTM 77 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc-cccccc----eeeeCchHHHHHHHcCChH-HHHhhccCCcceEE
Confidence 47899999999999999999999999999999621 111111 0011122233344443110 000000 00 0000
Q ss_pred hccCCCc-------------cccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEec
Q 048823 155 LNTSRGP-------------AVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYA 220 (699)
Q Consensus 155 ~~~s~g~-------------~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~A 220 (699)
.+...+. ....+...+++..+.+.|.+.+.+.++++++ .+.|+++..+ ++. +.|.+.+|.++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~-v~v~~~~g~~~~a 155 (396)
T PRK08163 78 MDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDG-VTVFDQQGNRWTG 155 (396)
T ss_pred EeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCc-eEEEEcCCCEEec
Confidence 0000000 0000111357778888999988877778887 6899999764 343 4477788888999
Q ss_pred CeEEEecCCCCCCc
Q 048823 221 PSVVLTTGTFMSGK 234 (699)
Q Consensus 221 d~VVlAtG~~~~~~ 234 (699)
|.||.|+|.++..+
T Consensus 156 d~vV~AdG~~S~~r 169 (396)
T PRK08163 156 DALIGCDGVKSVVR 169 (396)
T ss_pred CEEEECCCcChHHH
Confidence 99999999986543
No 148
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.96 E-value=6.6e-09 Score=115.18 Aligned_cols=143 Identities=21% Similarity=0.236 Sum_probs=83.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
+||+|||||+||++||+.|++.|++|+|+|+... . ...|. +++.. ... +.++- ...+....-...++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~-~-~~~cg---~~i~~-~~l---~~~g~-~~~~~~~~i~~~~~~~p 70 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD-N-AKPCG---GAIPL-CMV---DEFAL-PRDIIDRRVTKMKMISP 70 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC-C-CCCcc---ccccH-hhH---hhccC-chhHHHhhhceeEEecC
Confidence 5899999999999999999999999999999632 1 13353 22221 122 22221 11111000000000000
Q ss_pred CC-------CccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEec-CCCCEEEEEE--cC-----c--cEEec
Q 048823 158 SR-------GPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLG-KNDNVEGVCT--FF-----G--MNFYA 220 (699)
Q Consensus 158 s~-------g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e-~~g~v~gV~t--~d-----G--~~i~A 220 (699)
+. .......-..+++..|.+.|.+.+.+. |++++..+++++... ..+..++|++ .+ | .+++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~-G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a 149 (398)
T TIGR02028 71 SNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADA-GATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV 149 (398)
T ss_pred CceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHC-CcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEe
Confidence 00 000000112478899999999998886 899987678777532 1234455553 22 3 37999
Q ss_pred CeEEEecCCCC
Q 048823 221 PSVVLTTGTFM 231 (699)
Q Consensus 221 d~VVlAtG~~~ 231 (699)
+.||.|+|..+
T Consensus 150 ~~VIgADG~~S 160 (398)
T TIGR02028 150 DAVIGADGANS 160 (398)
T ss_pred CEEEECCCcch
Confidence 99999999874
No 149
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.95 E-value=5.6e-09 Score=115.67 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=87.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCc---------cc--hh
Q 048823 78 FDVIVVGGGHAGCEAALASARLG--AKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGE---------IG--KV 144 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~---------~~--~~ 144 (699)
|||+|||||++|+++|+.|++.| ++|+|+|+.... .. .....+........+-++.+|-. .. .+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~-~~--~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 78 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAG-AW--SRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVI 78 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cC--CCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEE
Confidence 89999999999999999999996 999999996321 00 00000111111222334444311 00 00
Q ss_pred hchhh--hhHH-hhccCC-CccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEe
Q 048823 145 ADMCY--LQKR-VLNTSR-GPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFY 219 (699)
Q Consensus 145 ~d~~~--i~~~-~~~~s~-g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~ 219 (699)
.+..+ .... ...... ..........+++..+...|.+.+.+. |++++ +++|+++..+ ++ .+.|++.+|.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~-~~-~v~v~~~~g~~~~ 155 (403)
T PRK07333 79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEAL-GIDLREATSVTDFETR-DE-GVTVTLSDGSVLE 155 (403)
T ss_pred EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEc-CC-EEEEEECCCCEEE
Confidence 00000 0000 000000 000000112457888999999998886 88887 7999999765 33 4557788888999
Q ss_pred cCeEEEecCCCC
Q 048823 220 APSVVLTTGTFM 231 (699)
Q Consensus 220 Ad~VVlAtG~~~ 231 (699)
||.||.|+|.++
T Consensus 156 ad~vI~AdG~~S 167 (403)
T PRK07333 156 ARLLVAADGARS 167 (403)
T ss_pred eCEEEEcCCCCh
Confidence 999999999874
No 150
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.94 E-value=5.5e-08 Score=119.29 Aligned_cols=110 Identities=26% Similarity=0.344 Sum_probs=71.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..+||+|||||+||++||+.|++.|++|+|+|++ +..||..... .. .
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~----------~~~GG~~~~~--------~~------~--------- 208 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQ----------PEAGGSLLSE--------AE------T--------- 208 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecC----------CCCCCeeecc--------cc------c---------
Confidence 4689999999999999999999999999999984 2333322100 00 0
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc--------C----c--cEEec
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF--------F----G--MNFYA 220 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~--------d----G--~~i~A 220 (699)
.. ..+...+...+.+.+...++++++ +++|..+.. ++.+..+... + + ..+.+
T Consensus 209 --~~---------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a 275 (985)
T TIGR01372 209 --ID---------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYD--HNTVGALERVTDHLDAPPKGVPRERLWRIRA 275 (985)
T ss_pred --cC---------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEec--CCeEEEEEEeeeccccccCCccccceEEEEc
Confidence 00 123334555566677777678887 588887742 2222222100 1 1 16899
Q ss_pred CeEEEecCCCC
Q 048823 221 PSVVLTTGTFM 231 (699)
Q Consensus 221 d~VVlAtG~~~ 231 (699)
+.||+|||+..
T Consensus 276 ~~VILATGa~~ 286 (985)
T TIGR01372 276 KRVVLATGAHE 286 (985)
T ss_pred CEEEEcCCCCC
Confidence 99999999863
No 151
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.94 E-value=4.9e-09 Score=119.70 Aligned_cols=61 Identities=11% Similarity=-0.025 Sum_probs=48.4
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc----cEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG----MNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG----~~i~Ad~VVlAtG~~~ 231 (699)
+++|+..+...+...+.+. |++++ +++|+++..+ +..++|.+.++ .+++|+.||+|+|.|+
T Consensus 150 g~vd~~rl~~~l~~~a~~~-Ga~i~~~~~V~~i~~~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 150 CWVDDARLVVLNALDAAER-GATILTRTRCVSARRE--GGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred eeecHHHHHHHHHHHHHHC-CCEEecCcEEEEEEEc--CCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 4578888888888888886 78887 5899999864 45567777665 3689999999999994
No 152
>PTZ00367 squalene epoxidase; Provisional
Probab=98.94 E-value=5.1e-09 Score=120.40 Aligned_cols=155 Identities=25% Similarity=0.250 Sum_probs=89.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeec-ccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhh-h-hH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNI-DKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCY-L-QK 152 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~-~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~-i-~~ 152 (699)
.++||+|||||++|+++|+.|++.|++|+|+|+.. .... ...|-.......+-++.+|-. ........ + .+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~-----r~~G~~L~p~g~~~L~~LGL~-d~l~~i~~~~~~~ 105 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPD-----RIVGELLQPGGVNALKELGME-ECAEGIGMPCFGY 105 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccc-----hhhhhhcCHHHHHHHHHCCCh-hhHhhcCcceeee
Confidence 45999999999999999999999999999999953 1100 111211122233445555411 11100000 0 00
Q ss_pred HhhccCCCccc-----c-ccccccCHHHHHHHHHHHH--HccCCeEEEeeEEEEEEecCC---CCEEEEEEc--C-----
Q 048823 153 RVLNTSRGPAV-----W-ALRAQTDKREYAMRMKNIV--ESTANLCIREAMVTDILLGKN---DNVEGVCTF--F----- 214 (699)
Q Consensus 153 ~~~~~s~g~~~-----~-~~r~~~d~~~~~~~L~~~l--~~~~gv~i~~~~V~~l~~e~~---g~v~gV~t~--d----- 214 (699)
.+... .|... . .....+.+..+.+.|.+.+ ...+++++++++|+++..++. +++.+|++. +
T Consensus 106 ~v~~~-~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~ 184 (567)
T PTZ00367 106 VVFDH-KGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLEEGPGFSERAYGVEYTEAEKYDVP 184 (567)
T ss_pred EEEEC-CCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEeccccCccCCeeEEEEEecCCccccc
Confidence 00010 01000 0 0011234566777888877 445789998888999875422 236677643 2
Q ss_pred ------------------ccEEecCeEEEecCCCCCCceee
Q 048823 215 ------------------GMNFYAPSVVLTTGTFMSGKIWV 237 (699)
Q Consensus 215 ------------------G~~i~Ad~VVlAtG~~~~~~~~~ 237 (699)
|.+++||.||.|+|.+|..+-.+
T Consensus 185 ~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l 225 (567)
T PTZ00367 185 ENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY 225 (567)
T ss_pred ccccccccccccccccccceEEEeCEEEECCCcchHHHHHc
Confidence 45899999999999997554443
No 153
>PRK12839 hypothetical protein; Provisional
Probab=98.94 E-value=9.8e-09 Score=118.69 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc--Ccc-EEe-cCeEEEecCCCCCC
Q 048823 171 DKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF--FGM-NFY-APSVVLTTGTFMSG 233 (699)
Q Consensus 171 d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~--dG~-~i~-Ad~VVlAtG~~~~~ 233 (699)
+...+...|.+.+.+. |++++ ++.|++|+.+++++|+||... +|. .+. ++.||+|||+|..+
T Consensus 212 ~g~~l~~~L~~~a~~~-Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n 278 (572)
T PRK12839 212 NGTALTGRLLRSADDL-GVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPND 278 (572)
T ss_pred cHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccC
Confidence 3456677788888776 88987 699999987646899999754 343 344 58999999999764
No 154
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.93 E-value=7.3e-09 Score=116.01 Aligned_cols=66 Identities=15% Similarity=0.007 Sum_probs=51.5
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc-----EEecCeEEEecCCCC
Q 048823 163 VWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM-----NFYAPSVVLTTGTFM 231 (699)
Q Consensus 163 ~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~-----~i~Ad~VVlAtG~~~ 231 (699)
.+.+...+|...+...+...+..+ |..++ .++|+.+..+ ++ ++||.+.|.. .++|+.||.|||+|.
T Consensus 154 ~~y~D~~vddaRLv~~~a~~A~~~-Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 154 FRYPDGVVDDARLVAANARDAAEH-GAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred EEEccceechHHHHHHHHHHHHhc-ccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 344455677777777777777776 77777 5999999987 55 9999987643 689999999999994
No 155
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.92 E-value=3.5e-08 Score=105.84 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.+..++.+.++++ |.+++ +..|.+|..| +|+++||.+.||.+++++.||-.++.|
T Consensus 265 avs~aia~~~~~~-GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 265 AVSFAIAEGAKRA-GAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred HHHHHHHHHHHhc-cceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchH
Confidence 4567888888888 55555 7999999998 699999999999999999999999988
No 156
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.91 E-value=5.4e-09 Score=117.61 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=52.7
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.++|+..|.+.|.+.+.+. |+++++..|+++..+++|.+.+|++.+|.++.||.||.|||..
T Consensus 149 yhlDR~~fd~~L~~~A~~~-Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 149 YHLDRAKFDQFLRRHAEER-GVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp EEEEHHHHHHHHHHHHHHT-T-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred EEEeHHHHHHHHHHHHhcC-CCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 3689999999999999998 9999988899888876788999999999999999999999975
No 157
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.91 E-value=1.3e-08 Score=105.62 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=49.5
Q ss_pred ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEe-cCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 169 QTDKREYAMRMKNIVESTANLCIR-EAMVTDILL-GKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 169 ~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~-e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.+.......+++..++++ |+.++ ...|+.+.. ++++..++|.|.+|..+.|+.+|+|+|+|.
T Consensus 149 vi~a~kslk~~~~~~~~~-G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 149 VINAAKSLKALQDKAREL-GVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred EeeHHHHHHHHHHHHHHc-CeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 456677788999999998 66666 566666643 235778899999999999999999999995
No 158
>PRK08244 hypothetical protein; Provisional
Probab=98.91 E-value=8.5e-09 Score=117.57 Aligned_cols=146 Identities=18% Similarity=0.116 Sum_probs=83.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchh----hhhH
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMC----YLQK 152 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~----~i~~ 152 (699)
++||+|||||++|+++|+.|++.|++|+|||+..... ....+........+-++.+|- ...+.... ...+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~-----~~~ra~~l~~~~~e~l~~lGl-~~~l~~~~~~~~~~~~ 75 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETV-----PYSKALTLHPRTLEILDMRGL-LERFLEKGRKLPSGHF 75 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC-----CCcceeEecHHHHHHHHhcCc-HHHHHhhcccccceEE
Confidence 3899999999999999999999999999999962210 000111111122233333331 11110000 0000
Q ss_pred Hh----hccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE--cCc-cEEecCeEE
Q 048823 153 RV----LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT--FFG-MNFYAPSVV 224 (699)
Q Consensus 153 ~~----~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t--~dG-~~i~Ad~VV 224 (699)
.. ...............+.+..+.+.|.+.+++. +++++ +++|+++..+ ++.+ .|.+ .+| .+++||.||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~-~~~v-~v~~~~~~g~~~i~a~~vV 152 (493)
T PRK08244 76 AGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSL-GVEIFRGAEVLAVRQD-GDGV-EVVVRGPDGLRTLTSSYVV 152 (493)
T ss_pred ecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHc-CCeEEeCCEEEEEEEc-CCeE-EEEEEeCCccEEEEeCEEE
Confidence 00 00000000001111356677888888888776 78886 6899999765 3443 3443 356 479999999
Q ss_pred EecCCCC
Q 048823 225 LTTGTFM 231 (699)
Q Consensus 225 lAtG~~~ 231 (699)
.|+|.++
T Consensus 153 gADG~~S 159 (493)
T PRK08244 153 GADGAGS 159 (493)
T ss_pred ECCCCCh
Confidence 9999985
No 159
>PRK07236 hypothetical protein; Provisional
Probab=98.90 E-value=1e-08 Score=113.11 Aligned_cols=149 Identities=15% Similarity=0.057 Sum_probs=85.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCC-ccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGP-AKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~-~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..||+|||||++|+++|+.|++.|++|+|+|+..... ...-+|+ ......+.++.+|-.... ..........+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-----~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~ 79 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTEL-----DGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIY 79 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCc-----CCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEE
Confidence 4789999999999999999999999999999852210 0111122 123344555555422110 00000000000
Q ss_pred ccCCCcccc---ccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 NTSRGPAVW---ALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 ~~s~g~~~~---~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
....|.... .......+..+.+.|.+. .+++.+. +++|+++..+ ++. +.|++.+|++++||.||.|+|.++
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRAA---FPAERYHLGETLVGFEQD-GDR-VTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHHh---CCCcEEEcCCEEEEEEec-CCe-EEEEECCCCEEEeCEEEECCCCCc
Confidence 001111000 000112344455555443 3566665 6999999865 333 457888999999999999999987
Q ss_pred CCcee
Q 048823 232 SGKIW 236 (699)
Q Consensus 232 ~~~~~ 236 (699)
..+-.
T Consensus 155 ~vR~~ 159 (386)
T PRK07236 155 TVRAQ 159 (386)
T ss_pred hHHHH
Confidence 65433
No 160
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.90 E-value=2e-08 Score=116.49 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc-c--EEec-CeEEEecCCCCCC
Q 048823 172 KREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG-M--NFYA-PSVVLTTGTFMSG 233 (699)
Q Consensus 172 ~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG-~--~i~A-d~VVlAtG~~~~~ 233 (699)
...+...|.+.+++. +++++ ++.|++|..+ +++|+||.+.++ + .+.| +.||+|||+|..+
T Consensus 220 G~~l~~aL~~~~~~~-Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 220 GNALIGRLLYSLRAR-GVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cHHHHHHHHHHHHhC-CCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 345677788888876 88887 6999999876 689999987543 3 5776 7899999999775
No 161
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.89 E-value=1.5e-08 Score=112.60 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=45.7
Q ss_pred ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc-----cEEecCeEEEecCCCC
Q 048823 169 QTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG-----MNFYAPSVVLTTGTFM 231 (699)
Q Consensus 169 ~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG-----~~i~Ad~VVlAtG~~~ 231 (699)
.++...+...|.+.+++. |++++ +++|+++..+ ++.+ .+.+.++ .+++|+.||+|+|.|+
T Consensus 193 ~~~~~~~~~~l~~~a~~~-G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 193 TGDIHKFTTGLAAACARL-GVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred ccCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 467888899999999887 88887 5899999865 3443 3443332 3799999999999994
No 162
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.87 E-value=1e-08 Score=112.75 Aligned_cols=136 Identities=21% Similarity=0.085 Sum_probs=85.2
Q ss_pred cEEEECCChHHHHHHHHH--HHcCCceeEEeeecccccCCCCCCCCCCCccchh--hHHHHhhcCccchhhchhhhhHHh
Q 048823 79 DVIVVGGGHAGCEAALAS--ARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQL--VHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~L--Ar~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l--~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
||||||||+||+++|++| ++.|.+|+|||++....-...| ..+.....+ .+++-.. .+ +.. .+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~---tW~~~~~~~~~~~~~v~~-----~w-~~~----~v 67 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR---TWCFWEKDLGPLDSLVSH-----RW-SGW----RV 67 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc---ccccccccccchHHHHhe-----ec-Cce----EE
Confidence 899999999999999999 8889999999986332101111 111111000 1111000 00 000 00
Q ss_pred hccCCCcccc-ccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 155 LNTSRGPAVW-ALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 155 ~~~s~g~~~~-~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.......... .+-..+++..|.+.+.+.+. .+++.++++.|+++... +..+.|++.+|.+++|+.||.|+|..
T Consensus 68 ~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~--~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 68 YFPDGSRILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEET--GDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred EeCCCceEEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEec--CceEEEEECCCCEEEeeEEEECCCcc
Confidence 0000010000 11125688999999999998 55888889999999864 34567889999999999999999954
No 163
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.87 E-value=3.8e-08 Score=114.28 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc--Ccc-EEec-CeEEEecCCCCCC
Q 048823 171 DKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF--FGM-NFYA-PSVVLTTGTFMSG 233 (699)
Q Consensus 171 d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~--dG~-~i~A-d~VVlAtG~~~~~ 233 (699)
+...+...|.+.+++. |++++ ++.|++|+.+ +++++||.+. ++. .+.| +.||+|||+|.+.
T Consensus 215 ~g~~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 215 NGNALVARLLKSAEDL-GVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred CHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccC
Confidence 3445677888888887 88887 6999999876 6889998764 333 5789 9999999999764
No 164
>PRK07190 hypothetical protein; Provisional
Probab=98.87 E-value=1.1e-08 Score=116.27 Aligned_cols=145 Identities=11% Similarity=0.118 Sum_probs=83.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhc----------
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVAD---------- 146 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d---------- 146 (699)
.+||+|||||++|+++|+.|++.|++|+|||+.........|. +.. ....+-++.+| ....+..
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~----~l~-~~tle~L~~lG-l~~~l~~~~~~~~~~~~ 78 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRAD----ALN-ARTLQLLELVD-LFDELYPLGKPCNTSSV 78 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccce----EeC-HHHHHHHHhcC-hHHHHHhhCccceeEEE
Confidence 4899999999999999999999999999999963211111110 011 11111122222 1000000
Q ss_pred --hhh-h--hHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEec
Q 048823 147 --MCY-L--QKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYA 220 (699)
Q Consensus 147 --~~~-i--~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~A 220 (699)
... + ...+.....+ ........+....+...|.+.+.+. |+++. +++|+++..+ ++.+ .|.+.+|++++|
T Consensus 79 ~~~g~~i~~~~~~~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~-~~~v-~v~~~~g~~v~a 154 (487)
T PRK07190 79 WANGKFISRQSSWWEELEG-CLHKHFLMLGQSYVEKLLDDKLKEA-GAAVKRNTSVVNIELN-QAGC-LTTLSNGERIQS 154 (487)
T ss_pred ecCCceEeeccccCccCCc-CCCCceEecCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEc-CCee-EEEECCCcEEEe
Confidence 000 0 0000000000 0000001234556777888888876 88886 6999999876 3433 355677878999
Q ss_pred CeEEEecCCCC
Q 048823 221 PSVVLTTGTFM 231 (699)
Q Consensus 221 d~VVlAtG~~~ 231 (699)
+.||.|+|..+
T Consensus 155 ~~vVgADG~~S 165 (487)
T PRK07190 155 RYVIGADGSRS 165 (487)
T ss_pred CEEEECCCCCH
Confidence 99999999874
No 165
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.87 E-value=1e-08 Score=108.61 Aligned_cols=149 Identities=18% Similarity=0.263 Sum_probs=90.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHc------CCceeEEeeecccccCCCCCCCCCCCccchhhHHH----HhhcCccchh
Q 048823 75 DERFDVIVVGGGHAGCEAALASARL------GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEV----DALGGEIGKV 144 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~------G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el----~~lg~~~~~~ 144 (699)
..++||+|||||+||++||+.|.+. -++|+|+|+... +|.. ...|.........|+ ...+.....
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~-~Ggh---tlSGaviep~aldEL~P~wke~~apl~t- 148 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE-VGGH---TLSGAVIEPGALDELLPDWKEDGAPLNT- 148 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc-cCCc---eecceeeccchhhhhCcchhhcCCcccc-
Confidence 4579999999999999999998764 368999999521 1111 111222111122221 111111110
Q ss_pred hchhhhhHHhhccCCCccccc---c----ccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC--
Q 048823 145 ADMCYLQKRVLNTSRGPAVWA---L----RAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF-- 214 (699)
Q Consensus 145 ~d~~~i~~~~~~~s~g~~~~~---~----r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d-- 214 (699)
..+...+.++..+....+.. . ...+.-..+.++|-+.+++. ||+++ ...+.+++.+++|.|.||.|.|
T Consensus 149 -~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~-GvEiyPg~aaSevly~edgsVkGiaT~D~G 226 (621)
T KOG2415|consen 149 -PVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEEL-GVEIYPGFAASEVLYDEDGSVKGIATNDVG 226 (621)
T ss_pred -cccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhh-CceeccccchhheeEcCCCcEeeEeecccc
Confidence 00111222222211100000 0 11234567889999999998 99999 5778888888899999998865
Q ss_pred -------------ccEEecCeEEEecCCC
Q 048823 215 -------------GMNFYAPSVVLTTGTF 230 (699)
Q Consensus 215 -------------G~~i~Ad~VVlAtG~~ 230 (699)
|..|+|+..|.|-|..
T Consensus 227 I~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 227 ISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred ccCCCCccccccccceecceeEEEecccc
Confidence 3489999999999986
No 166
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.86 E-value=1.4e-08 Score=117.23 Aligned_cols=150 Identities=20% Similarity=0.156 Sum_probs=85.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchh------h
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMC------Y 149 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~------~ 149 (699)
..+||+|||||++|+++|+.|++.|++|+|+|+.... ...+ .+........+-++.+|-. ..+.+.. .
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~-~~~~----ra~~l~~~~~~~l~~lGl~-~~l~~~~~~~~~~~ 95 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL-STGS----RAICFAKRSLEIFDRLGCG-ERMVDKGVSWNVGK 95 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC-CCCC----eEEEEcHHHHHHHHHcCCc-HHHHhhCceeecee
Confidence 4589999999999999999999999999999996211 1000 0000111222223333311 0000000 0
Q ss_pred h---hHHhh--ccCCCc-cccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEE-EEEEcCcc-EEec
Q 048823 150 L---QKRVL--NTSRGP-AVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVE-GVCTFFGM-NFYA 220 (699)
Q Consensus 150 i---~~~~~--~~s~g~-~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~-gV~t~dG~-~i~A 220 (699)
. ..... ...... ..+.....+.+..+...|.+.+.+.++++++ +++|+++..+ ++.+. .+...+|. +++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~-~~~v~v~~~~~~g~~~i~a 174 (547)
T PRK08132 96 VFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQH-DDGVTLTVETPDGPYTLEA 174 (547)
T ss_pred EEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEc-CCEEEEEEECCCCcEEEEe
Confidence 0 00000 000000 0000011245667788889988888788886 7999999865 33332 23333554 6999
Q ss_pred CeEEEecCCCCC
Q 048823 221 PSVVLTTGTFMS 232 (699)
Q Consensus 221 d~VVlAtG~~~~ 232 (699)
|.||.|+|.++.
T Consensus 175 d~vVgADG~~S~ 186 (547)
T PRK08132 175 DWVIACDGARSP 186 (547)
T ss_pred CEEEECCCCCcH
Confidence 999999999853
No 167
>PRK06126 hypothetical protein; Provisional
Probab=98.86 E-value=1.6e-08 Score=116.76 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=85.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhc---------Cccc---h
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALG---------GEIG---K 143 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg---------~~~~---~ 143 (699)
..+||+|||||++|+++|+.|+++|++|+|+|+.... ...+.. .++. ...++-++.+| .... .
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~-~~~~ra---~~l~-~r~~e~L~~lGl~~~l~~~g~~~~~~~~ 80 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT-AFNPKA---NTTS-ARSMEHFRRLGIADEVRSAGLPVDYPTD 80 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC-CCCCcc---ccCC-HHHHHHHHhcChHHHHHhhcCCccccCC
Confidence 4589999999999999999999999999999986321 111110 0111 11112222222 1000 0
Q ss_pred ---hhchhhhhH-HhhccCCC-c-----------cccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCC
Q 048823 144 ---VADMCYLQK-RVLNTSRG-P-----------AVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDN 206 (699)
Q Consensus 144 ---~~d~~~i~~-~~~~~s~g-~-----------~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~ 206 (699)
.....+... ++...... . ........+++..+...|.+.+.+.++++++ +++|+++..+ ++.
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~ 159 (545)
T PRK06126 81 IAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD-ADG 159 (545)
T ss_pred ceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC-CCe
Confidence 000000000 00000000 0 0000112456777888999988877788986 7999999876 444
Q ss_pred EEEEEE---cCcc--EEecCeEEEecCCCCC
Q 048823 207 VEGVCT---FFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 207 v~gV~t---~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
+. +++ .+|+ ++.||.||.|+|.++.
T Consensus 160 v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 160 VT-ATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EE-EEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 44 333 3453 7899999999999853
No 168
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.85 E-value=2.8e-08 Score=117.32 Aligned_cols=60 Identities=20% Similarity=0.091 Sum_probs=48.8
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
+.+++..+...|.+.+.+ |++++ +++|+++..+ ++.+ .|.+.+|..+.|+.||+|+|.++
T Consensus 403 G~v~p~~l~~aL~~~a~~--Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 403 GWLCPAELCRALLALAGQ--QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred CeeCHHHHHHHHHHhccc--CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCc
Confidence 356889999999998877 77876 6899999865 4444 48888887788999999999985
No 169
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.84 E-value=2.4e-08 Score=110.50 Aligned_cols=150 Identities=15% Similarity=0.038 Sum_probs=84.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhch----hhhhH
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADM----CYLQK 152 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~----~~i~~ 152 (699)
.+||+|||||++|+++|+.|++.|++|+|+|+..... .....-++.......+-++.+|- ...+... ....+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~---~~~~~~a~~l~~~~~~~l~~lGl-~~~l~~~~~~~~~~~~ 77 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREY---VEGRIRAGVLEQGTVDLLREAGV-GERMDREGLVHDGIEL 77 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccc---cccccceeEECHhHHHHHHHcCC-hHHHHhcCCccCcEEE
Confidence 4799999999999999999999999999999963210 00011111112223334444441 1111000 00000
Q ss_pred ---------HhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE-cCcc--EEe
Q 048823 153 ---------RVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT-FFGM--NFY 219 (699)
Q Consensus 153 ---------~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t-~dG~--~i~ 219 (699)
.+.....++.. ..+.+..+.+.|.+.+.+. |++++ +++|+++... ++....|++ .+|+ +++
T Consensus 78 ~~~g~~~~~~~~~~~~~~~~----~~~~~~~l~~~Ll~~a~~~-gv~v~~~~~v~~i~~~-~~~~~~V~~~~~G~~~~i~ 151 (392)
T PRK08243 78 RFDGRRHRIDLTELTGGRAV----TVYGQTEVTRDLMAARLAA-GGPIRFEASDVALHDF-DSDRPYVTYEKDGEEHRLD 151 (392)
T ss_pred EECCEEEEeccccccCCceE----EEeCcHHHHHHHHHHHHhC-CCeEEEeeeEEEEEec-CCCceEEEEEcCCeEEEEE
Confidence 00000001100 1223456666777666664 77775 7889988752 233345665 4664 789
Q ss_pred cCeEEEecCCCCCCcee
Q 048823 220 APSVVLTTGTFMSGKIW 236 (699)
Q Consensus 220 Ad~VVlAtG~~~~~~~~ 236 (699)
||.||.|+|..+..+-.
T Consensus 152 ad~vVgADG~~S~vR~~ 168 (392)
T PRK08243 152 CDFIAGCDGFHGVSRAS 168 (392)
T ss_pred eCEEEECCCCCCchhhh
Confidence 99999999998755443
No 170
>PRK07588 hypothetical protein; Provisional
Probab=98.83 E-value=2.6e-08 Score=110.06 Aligned_cols=143 Identities=15% Similarity=0.043 Sum_probs=83.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcC---------ccch--hhch
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGG---------EIGK--VADM 147 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~---------~~~~--~~d~ 147 (699)
||+|||||++|+++|+.|++.|++|+|+|+.... ...+ .... . ...-.+.++.+|- .... +.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~-~~~g--~~~~-l-~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 76 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL-RTGG--YMVD-F-WGVGYEVAKRMGITDQLREAGYQIEHVRSVDP 76 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc-cCCC--eEEe-c-cCcHHHHHHHcCCHHHHHhccCCccceEEEcC
Confidence 7999999999999999999999999999996221 1000 0000 0 0111222333331 0000 0000
Q ss_pred hh-----hhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecC
Q 048823 148 CY-----LQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAP 221 (699)
Q Consensus 148 ~~-----i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad 221 (699)
.+ +.+..+....+. .-..+.+..+...|.+.+. ++++++ +++|+++..+ ++. +.|.+.+|+++.+|
T Consensus 77 ~g~~~~~~~~~~~~~~~g~----~~~~i~r~~l~~~L~~~~~--~~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~d 148 (391)
T PRK07588 77 TGRRKADLNVDSFRRMVGD----DFTSLPRGDLAAAIYTAID--GQVETIFDDSIATIDEH-RDG-VRVTFERGTPRDFD 148 (391)
T ss_pred CCCEEEEecHHHccccCCC----ceEEEEHHHHHHHHHHhhh--cCeEEEeCCEEeEEEEC-CCe-EEEEECCCCEEEeC
Confidence 00 000000000010 0013456677777777553 368876 6999999865 344 44788899889999
Q ss_pred eEEEecCCCCCCc
Q 048823 222 SVVLTTGTFMSGK 234 (699)
Q Consensus 222 ~VVlAtG~~~~~~ 234 (699)
.||.|+|.+|..+
T Consensus 149 ~vIgADG~~S~vR 161 (391)
T PRK07588 149 LVIGADGLHSHVR 161 (391)
T ss_pred EEEECCCCCccch
Confidence 9999999987544
No 171
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.83 E-value=9.6e-09 Score=115.45 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=71.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhc
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLN 156 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~ 156 (699)
+|||+|||||++|++||+.|+++|++|+|+|++...+| +.| ...|++....+.+.... ...+...
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~G-G~~-~~~gcip~k~l~~~~~~------------~~~~~~~- 67 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYG-GTC-INIGCIPTKTLVHDAQQ------------HTDFVRA- 67 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccc-eeE-eeccccchHHHHHHhcc------------CCCHHHH-
Confidence 59999999999999999999999999999998421111 112 11222221112221110 0000000
Q ss_pred cCCCccccccccccCHHH----HHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc-EEecCeEEEecCCC
Q 048823 157 TSRGPAVWALRAQTDKRE----YAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM-NFYAPSVVLTTGTF 230 (699)
Q Consensus 157 ~s~g~~~~~~r~~~d~~~----~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~-~i~Ad~VVlAtG~~ 230 (699)
...... +.....+.+.+.++++++..+++.+. .+...|.+.+|. ++.+|.||+|||+.
T Consensus 68 ------------~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~----~~~~~v~~~~g~~~~~~d~lviATGs~ 130 (441)
T PRK08010 68 ------------IQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFIN----NHSLRVHRPEGNLEIHGEKIFINTGAQ 130 (441)
T ss_pred ------------HHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEec----CCEEEEEeCCCeEEEEeCEEEEcCCCc
Confidence 000001 11112233444468999988887663 234556667775 69999999999985
No 172
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.82 E-value=5.5e-08 Score=112.92 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC--cc-EEecC-eEEEecCCCCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF--GM-NFYAP-SVVLTTGTFMSG 233 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d--G~-~i~Ad-~VVlAtG~~~~~ 233 (699)
.+...|.+.+++. |++++ ++.|++|..+ +++|+||++.+ +. .+.++ .||+|||+|...
T Consensus 215 ~l~~~L~~~~~~~-Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 215 ALAARLAKSALDL-GIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence 4556677777775 88887 6999999886 68899988754 32 47785 899999999743
No 173
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.82 E-value=5.3e-08 Score=111.32 Aligned_cols=56 Identities=20% Similarity=0.111 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 173 REYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 173 ~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..+.+.|.+.+++. |++++ ++.|++|..+ ++++++|++.+|+++.||.||+|++..
T Consensus 219 ~~l~~al~~~~~~~-G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDL-GGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHC-CCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence 45678888888887 67776 7999999876 678899999999889999999998864
No 174
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.82 E-value=1.6e-08 Score=113.60 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+|||+|||||+||++||..|++.|++|+|+|++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~ 35 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEES 35 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecC
Confidence 599999999999999999999999999999985
No 175
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.81 E-value=3.1e-08 Score=114.43 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc-Ccc--EEecC-eEEEecCCCCCCc
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF-FGM--NFYAP-SVVLTTGTFMSGK 234 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~-dG~--~i~Ad-~VVlAtG~~~~~~ 234 (699)
.+...|.+.+++. +++++ ++.|++|+.+ +++|+||... +|+ .+.|+ .||+|||+|..+.
T Consensus 209 ~~~~~L~~~~~~~-gv~v~~~t~v~~l~~~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~ 272 (557)
T PRK07843 209 ALAAGLRIGLQRA-GVPVLLNTPLTDLYVE-DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNE 272 (557)
T ss_pred HHHHHHHHHHHcC-CCEEEeCCEEEEEEEe-CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCH
Confidence 3556666777775 88887 6999999876 6889998764 443 57886 6999999997643
No 176
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.81 E-value=9.1e-09 Score=111.05 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=46.4
Q ss_pred HHHHhcccCCcCCccccccccccCCCcCccccC-cccccCCCCCEEEecccCCCchHHHHHHHHHHHHHHHHHHhc
Q 048823 367 LPLLRTLPGLENCSMLRPAYAVEYDYLPAHQCY-RSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSD 441 (699)
Q Consensus 367 ~~~lr~ipgLe~a~i~r~gy~~eyd~i~p~~l~-~~letk~i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~ 441 (699)
.+-+..+.||+.- ++.|+-+.+-+ ...++ .++|+|+||-+.|+.-...+.+||..||..|+..+.
T Consensus 480 ~~kia~iLgL~~~---------~~gF~k~~hPkl~pv~s-~~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 480 AKKIAKILGLSQD---------EDGFLKEAHPKLRPVDS-NRDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred hHHHHHhcCcccC---------CCCccccCCCCcccccc-cCCcEEEeecccCCccHHHHHHHhHHHHHHHHHHhh
Confidence 3455566666633 24455444322 23445 389999999999999999999999999999988654
No 177
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.80 E-value=1.6e-08 Score=114.24 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=71.8
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
.|||+|||||++|+.||+.|++.|++|+|||++ .+++.+.+|.|+..-....++.+.+......-.. .+...+++..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~ 79 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIE-VENVSVDWEK 79 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCC-CCCCcCCHHH
Confidence 389999999999999999999999999999983 2223333444432111111111111110000000 0000000000
Q ss_pred hccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCc-cEEecCeEEEecCCC
Q 048823 155 LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFG-MNFYAPSVVLTTGTF 230 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG-~~i~Ad~VVlAtG~~ 230 (699)
+.. +...-...+...+...+++ .+++++..++..+. .+.+.|...+| .++.+|.||+|||+.
T Consensus 80 ~~~---------~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~~~----~~~~~v~~~~g~~~~~~d~lVlAtG~~ 142 (461)
T TIGR01350 80 MQK---------RKNKVVKKLVGGVKGLLKK-NKVTVIKGEAKFLD----PGTVLVTGENGEETLTAKNIIIATGSR 142 (461)
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHh-CCCEEEEEEEEEcc----CCEEEEecCCCcEEEEeCEEEEcCCCC
Confidence 000 0000001112223334444 48999887776542 23344555555 479999999999975
No 178
>PRK06753 hypothetical protein; Provisional
Probab=98.79 E-value=3e-08 Score=108.71 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=83.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCc---------cc--hhhch
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGE---------IG--KVADM 147 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~---------~~--~~~d~ 147 (699)
||+|||||++|+++|+.|++.|++|+|+|+.... ....+... ......+.++.+|-. .. .+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~g~gi~----l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~ 76 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV-KEVGAGIG----IGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDD 76 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-ccccccee----eChHHHHHHHhcChHHHHHhcCCcccceeEEcC
Confidence 7999999999999999999999999999996321 11111101 111223333333210 00 00010
Q ss_pred hhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEe
Q 048823 148 CYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLT 226 (699)
Q Consensus 148 ~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlA 226 (699)
.+......+...+ .....+++..+...|.+.+. +..++ +++|+++..+ ++ .+.|++.+|.++.+|.||.|
T Consensus 77 ~g~~~~~~~~~~~----~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~-~~-~v~v~~~~g~~~~~~~viga 147 (373)
T PRK06753 77 KGTLLNKVKLKSN----TLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENE-TD-KVTIHFADGESEAFDLCIGA 147 (373)
T ss_pred CCCEEeecccccC----CccccccHHHHHHHHHHhCC---CceEEECCEEEEEEec-CC-cEEEEECCCCEEecCEEEEC
Confidence 0000000000001 11124577778777777653 34554 7999999754 33 35677889989999999999
Q ss_pred cCCCCCCc
Q 048823 227 TGTFMSGK 234 (699)
Q Consensus 227 tG~~~~~~ 234 (699)
+|.++..+
T Consensus 148 dG~~S~vR 155 (373)
T PRK06753 148 DGIHSKVR 155 (373)
T ss_pred CCcchHHH
Confidence 99886443
No 179
>PRK12831 putative oxidoreductase; Provisional
Probab=98.79 E-value=6.1e-08 Score=109.55 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=36.5
Q ss_pred cCcc-cccCCCCCEEEecccCC-CchHHHHHHHHHHHHHHHHHHhcCC
Q 048823 398 CYRS-LMTKKVEGLFFSGQING-TTGYEEAAAQGIISGINAARHSDGK 443 (699)
Q Consensus 398 l~~~-letk~i~gLf~AGqi~G-~~Gy~eA~a~G~~Ag~naa~~~~~~ 443 (699)
.+.. ++| ++||+|.|||+.+ ......|+++|..||.++.+++.++
T Consensus 417 vd~~~~~T-s~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~~ 463 (464)
T PRK12831 417 ADEETGLT-SKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred ECCCCCcc-CCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3443 777 4899999999864 4556799999999999999998763
No 180
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.79 E-value=4.3e-08 Score=108.42 Aligned_cols=152 Identities=11% Similarity=0.007 Sum_probs=80.7
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhch----hhhhH
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADM----CYLQK 152 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~----~~i~~ 152 (699)
.+||+|||||++|+++|+.|++.|++|+|+|+........ ..-.+.+ .....+-++.+|-. ..+... ....+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~--~~~a~~l-~~~~~~~L~~lGl~-~~l~~~~~~~~~~~~ 77 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLG--RIRAGVL-EQGTVDLLREAGVD-ERMDREGLVHEGTEI 77 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCC--ceeEeeE-CHHHHHHHHHCCCh-HHHHhcCceecceEE
Confidence 3799999999999999999999999999999963210000 0001111 11223334444311 111000 00000
Q ss_pred Hh------hccCCCccccccccccCHHHHHHHHHHHHHccCCeEE-EeeEEEEEEecCCCCEEEEEEc-Ccc--EEecCe
Q 048823 153 RV------LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCI-REAMVTDILLGKNDNVEGVCTF-FGM--NFYAPS 222 (699)
Q Consensus 153 ~~------~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i-~~~~V~~l~~e~~g~v~gV~t~-dG~--~i~Ad~ 222 (699)
.. .......... .........+...|.+.+... ++.+ +..+++.+... ++....|++. +|. +++||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~-~~~~~~V~~~~~g~~~~i~adl 154 (390)
T TIGR02360 78 AFDGQRFRIDLKALTGGK-TVMVYGQTEVTRDLMEAREAA-GLTTVYDADDVRLHDL-AGDRPYVTFERDGERHRLDCDF 154 (390)
T ss_pred eeCCEEEEEeccccCCCc-eEEEeCHHHHHHHHHHHHHhc-CCeEEEeeeeEEEEec-CCCccEEEEEECCeEEEEEeCE
Confidence 00 0000000000 000112345667777777776 4444 56777666532 2333456664 775 789999
Q ss_pred EEEecCCCCCCce
Q 048823 223 VVLTTGTFMSGKI 235 (699)
Q Consensus 223 VVlAtG~~~~~~~ 235 (699)
||.|+|.+|..+-
T Consensus 155 vIGADG~~S~VR~ 167 (390)
T TIGR02360 155 IAGCDGFHGVSRA 167 (390)
T ss_pred EEECCCCchhhHH
Confidence 9999999875443
No 181
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.79 E-value=3.7e-08 Score=114.94 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=48.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee----cccccCCCCCCCCCCCccchhhHHHHh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN----IDKIAWQPCNPAVGGPAKSQLVHEVDA 136 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~----~~~~g~~~c~~s~Gg~~~~~l~~el~~ 136 (699)
.+|||+|||+|++|..||+.|++.|.+|+|||++ .++|.+.+|.|+..-.......+++..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~ 179 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKN 179 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHh
Confidence 4699999999999999999999999999999964 455667777777655544455555543
No 182
>PRK05868 hypothetical protein; Validated
Probab=98.78 E-value=3.8e-08 Score=108.18 Aligned_cols=148 Identities=11% Similarity=-0.015 Sum_probs=83.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchh------------h
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKV------------A 145 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~------------~ 145 (699)
.||+|||||++|+++|+.|++.|++|+|+|+.... ...+.... .....++-++.+|-. ..+ .
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~-~~~g~~i~----~~~~a~~~L~~lGl~-~~~~~~~~~~~~~~~~ 75 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL-RPGGQAID----VRGPALDVLERMGLL-AAAQEHKTRIRGASFV 75 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCceeee----eCchHHHHHHhcCCH-HHHHhhccCccceEEE
Confidence 37999999999999999999999999999996221 11110001 111223344444311 100 0
Q ss_pred chhhhhHHh--hccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCe
Q 048823 146 DMCYLQKRV--LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPS 222 (699)
Q Consensus 146 d~~~i~~~~--~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~ 222 (699)
+..+..... .....+.........+.+..+.+.|.+.+ .++++++ .++|+++..+ +..+.|.+.+|.+++||.
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~--~~~v~i~~~~~v~~i~~~--~~~v~v~~~dg~~~~adl 151 (372)
T PRK05868 76 DRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT--QPSVEYLFDDSISTLQDD--GDSVRVTFERAAAREFDL 151 (372)
T ss_pred eCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc--cCCcEEEeCCEEEEEEec--CCeEEEEECCCCeEEeCE
Confidence 000000000 00000000001111234555666555433 2478876 6899999754 344568888999999999
Q ss_pred EEEecCCCCCCce
Q 048823 223 VVLTTGTFMSGKI 235 (699)
Q Consensus 223 VVlAtG~~~~~~~ 235 (699)
||.|+|..|..+-
T Consensus 152 vIgADG~~S~vR~ 164 (372)
T PRK05868 152 VIGADGLHSNVRR 164 (372)
T ss_pred EEECCCCCchHHH
Confidence 9999999875443
No 183
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.78 E-value=1.9e-08 Score=111.67 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=87.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhc----------hh
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVAD----------MC 148 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d----------~~ 148 (699)
+|+|||||++|+++|+.|++.|++|+|+|+... ....+. |........+.++.+|- ...+.. ..
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~-~~~~g~----gi~l~~~~~~~L~~~Gl-~~~l~~~~~~~~~~~~~~ 77 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE-LSEVGA----GLQLAPNAMRHLERLGV-ADRLSGTGVTPKALYLMD 77 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc-cCcCCc----cceeChhHHHHHHHCCC-hHHHhhcccCcceEEEec
Confidence 699999999999999999999999999998521 111110 11111223333333331 110000 00
Q ss_pred hhhHHhh-ccCC----CccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE---cCccEEe
Q 048823 149 YLQKRVL-NTSR----GPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT---FFGMNFY 219 (699)
Q Consensus 149 ~i~~~~~-~~s~----g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t---~dG~~i~ 219 (699)
+...... .... ......+-..+++..+.+.|.+.+.+.++++++ .++|+++..+ ++.+ .|++ .+++++.
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v-~v~~~~~~~~~~~~ 155 (400)
T PRK06475 78 GRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSI-TATIIRTNSVETVS 155 (400)
T ss_pred CCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCce-EEEEEeCCCCcEEe
Confidence 0000000 0000 000000111357888999999988876788886 7899999764 3443 3433 3345799
Q ss_pred cCeEEEecCCCCCCceee
Q 048823 220 APSVVLTTGTFMSGKIWV 237 (699)
Q Consensus 220 Ad~VVlAtG~~~~~~~~~ 237 (699)
||.||.|+|.+|..+-.+
T Consensus 156 adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 156 AAYLIACDGVWSMLRAKA 173 (400)
T ss_pred cCEEEECCCccHhHHhhc
Confidence 999999999997655443
No 184
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.78 E-value=5.3e-08 Score=111.70 Aligned_cols=111 Identities=27% Similarity=0.341 Sum_probs=79.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..|||+|||||+||++||.+|++.|++|+|++.. .||.... ...+.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~------------~GG~~~~------------------~~~~~---- 255 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER------------FGGQVLD------------------TMGIE---- 255 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC------------CCCeeec------------------cCccc----
Confidence 4699999999999999999999999999999862 2221100 00000
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+. .+ . + ......+...+.+.++++ +++++ +++|+++..+ +..+.|.+.+|.++.++.||+|||+.
T Consensus 256 ~~-~~--~--~--~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~--~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 256 NF-IS--V--P--ETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPA--AGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred cc-CC--C--C--CCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEec--CCeEEEEECCCCEEEcCEEEECCCCC
Confidence 00 00 0 0 134557888888888887 78887 6899999764 34566778888889999999999985
No 185
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.77 E-value=2.6e-08 Score=111.06 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=53.8
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
..+|+..+.++|...+++. |+.++ ++.|++|..+ +++..+|.|..| .|++.+||.|+|-|.
T Consensus 182 G~~DP~~lC~ala~~A~~~-GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASAL-GALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred cccCHHHHHHHHHHHHHhc-CcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhHHH
Confidence 3579999999999999998 77776 6999999987 677789999999 599999999999984
No 186
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.77 E-value=3.1e-08 Score=104.23 Aligned_cols=130 Identities=24% Similarity=0.313 Sum_probs=84.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee---cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN---IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQK 152 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~ 152 (699)
.+|||+|||+|++|..||+.+++.|++++.+|++ .+++-+..|-|+..-...+++++++..- .+. .
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~--~~~----~----- 106 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHE--DFA----S----- 106 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhh--HHH----h-----
Confidence 4699999999999999999999999999999996 5566677888888777777777776431 000 0
Q ss_pred HhhccCCCccccccccccCHH-----------HHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEe
Q 048823 153 RVLNTSRGPAVWALRAQTDKR-----------EYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFY 219 (699)
Q Consensus 153 ~~~~~s~g~~~~~~r~~~d~~-----------~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~ 219 (699)
+|-.+. ...+|.. .+...+...+++. +|+++.+...-+. -.-+.|...||. .+.
T Consensus 107 ------rGi~vs--~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkkn-kV~~~kG~gsf~~----p~~V~v~k~dg~~~ii~ 173 (506)
T KOG1335|consen 107 ------RGIDVS--SVSLDLQAMMKAKDNAVKQLTGGIENLFKKN-KVTYVKGFGSFLD----PNKVSVKKIDGEDQIIK 173 (506)
T ss_pred ------cCcccc--ceecCHHHHHHHHHHHHHHHhhHHHHHhhhc-CeEEEeeeEeecC----CceEEEeccCCCceEEe
Confidence 010000 0012222 2333444444443 7777765444331 223445556664 789
Q ss_pred cCeEEEecCC
Q 048823 220 APSVVLTTGT 229 (699)
Q Consensus 220 Ad~VVlAtG~ 229 (699)
++.+|+|||+
T Consensus 174 aKnIiiATGS 183 (506)
T KOG1335|consen 174 AKNIIIATGS 183 (506)
T ss_pred eeeEEEEeCC
Confidence 9999999997
No 187
>PRK07538 hypothetical protein; Provisional
Probab=98.77 E-value=4.6e-08 Score=109.00 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=84.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCC-ccchhhHHHHhhcCccchhhchhhh---hHHh
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGP-AKSQLVHEVDALGGEIGKVADMCYL---QKRV 154 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~-~~~~l~~el~~lg~~~~~~~d~~~i---~~~~ 154 (699)
||+|||||++|+++|+.|++.|++|+|+|+... .. +.-.++ ......+.++.+|-. ..+.. .+. .+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~-~~-----~~g~gi~l~p~~~~~L~~lgl~-~~l~~-~~~~~~~~~~ 73 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE-LR-----PLGVGINLLPHAVRELAELGLL-DALDA-IGIRTRELAY 73 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc-cc-----ccCcceeeCchHHHHHHHCCCH-HHHHh-hCCCCcceEE
Confidence 799999999999999999999999999999621 11 111111 111233434444311 10000 000 0000
Q ss_pred hcc--------CCCc--cccccccccCHHHHHHHHHHHHHcc-CCeEEE-eeEEEEEEecCCCCEEEEEEc-Cc--cEEe
Q 048823 155 LNT--------SRGP--AVWALRAQTDKREYAMRMKNIVEST-ANLCIR-EAMVTDILLGKNDNVEGVCTF-FG--MNFY 219 (699)
Q Consensus 155 ~~~--------s~g~--~~~~~r~~~d~~~~~~~L~~~l~~~-~gv~i~-~~~V~~l~~e~~g~v~gV~t~-dG--~~i~ 219 (699)
.+. ..+. ....+...+++..+...|.+.+.+. +...+. +++|+++..++++.++.+... +| .+++
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 153 (413)
T PRK07538 74 FNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVR 153 (413)
T ss_pred EcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEE
Confidence 000 0000 0011112367888888888887653 445565 799999976533322222211 22 4899
Q ss_pred cCeEEEecCCCCCCcee
Q 048823 220 APSVVLTTGTFMSGKIW 236 (699)
Q Consensus 220 Ad~VVlAtG~~~~~~~~ 236 (699)
||.||.|+|.+|..+-.
T Consensus 154 adlvIgADG~~S~vR~~ 170 (413)
T PRK07538 154 GDVLIGADGIHSAVRAQ 170 (413)
T ss_pred eeEEEECCCCCHHHhhh
Confidence 99999999998754433
No 188
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.76 E-value=5.7e-08 Score=108.94 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHccCCeEEE-eeEEEEEEecC-CCCEEEEEEcCc-cEEecCeEEEecCCCCCCc
Q 048823 172 KREYAMRMKNIVESTANLCIR-EAMVTDILLGK-NDNVEGVCTFFG-MNFYAPSVVLTTGTFMSGK 234 (699)
Q Consensus 172 ~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~-~g~v~gV~t~dG-~~i~Ad~VVlAtG~~~~~~ 234 (699)
...+...|.+.+++. +++++ ++.|++|..++ ++++++|...++ ..+.|+.||+|||+|..+.
T Consensus 122 g~~l~~~L~~~a~~~-Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~ 186 (432)
T TIGR02485 122 GKALTNALYSSAERL-GVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANR 186 (432)
T ss_pred HHHHHHHHHHHHHHc-CCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCH
Confidence 456788888888886 88886 69999998753 467888876543 4899999999999997765
No 189
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.76 E-value=1.4e-07 Score=105.42 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=69.1
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhc
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLN 156 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~ 156 (699)
+.+|||||||+||+.+|..|.+.+++|+|||+. +..- .. .+..+ ..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~----------~~~~--~~-~~l~~----------~~----------- 55 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPR----------NHML--FT-PLLPQ----------TT----------- 55 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCC----------CCcc--hh-hhHHH----------hc-----------
Confidence 468999999999999999998778999999983 1000 00 00000 00
Q ss_pred cCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEE--------cCccEEecCeEEEecC
Q 048823 157 TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCT--------FFGMNFYAPSVVLTTG 228 (699)
Q Consensus 157 ~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t--------~dG~~i~Ad~VVlAtG 228 (699)
.| ..+...+...+...+... ++.++..+|++|..+ .+.+.+.+ .+|.++.+|.+|+|||
T Consensus 56 --~g--------~~~~~~~~~~~~~~~~~~-~~~~i~~~V~~Id~~--~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG 122 (424)
T PTZ00318 56 --TG--------TLEFRSICEPVRPALAKL-PNRYLRAVVYDVDFE--EKRVKCGVVSKSNNANVNTFSVPYDKLVVAHG 122 (424)
T ss_pred --cc--------CCChHHhHHHHHHHhccC-CeEEEEEEEEEEEcC--CCEEEEecccccccccCCceEecCCEEEECCC
Confidence 00 122233444455555554 788899999999865 33333321 4566899999999999
Q ss_pred CC
Q 048823 229 TF 230 (699)
Q Consensus 229 ~~ 230 (699)
+.
T Consensus 123 s~ 124 (424)
T PTZ00318 123 AR 124 (424)
T ss_pred cc
Confidence 86
No 190
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.76 E-value=1.1e-07 Score=107.74 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=46.8
Q ss_pred ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE---cCc--cEEecCeEEEecCCCC
Q 048823 169 QTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT---FFG--MNFYAPSVVLTTGTFM 231 (699)
Q Consensus 169 ~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t---~dG--~~i~Ad~VVlAtG~~~ 231 (699)
.+|+..+..+|.+.+++. |++++ +++|+++..+ ++..+.|.+ .+| .+++|+.||+|+|+|+
T Consensus 174 ~Vdp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~-~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQ-SDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EECHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEc-CCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 579999999999999887 78886 6899999865 333333443 334 2689999999999994
No 191
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.76 E-value=1e-07 Score=108.20 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=47.9
Q ss_pred ccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE---cCcc--EEecCeEEEecCCCC
Q 048823 169 QTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT---FFGM--NFYAPSVVLTTGTFM 231 (699)
Q Consensus 169 ~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t---~dG~--~i~Ad~VVlAtG~~~ 231 (699)
.+|...+.+.|.+.+++.++++++ +++|+++..++++. +.|.+ .+|. ++.|+.||+|+|+|+
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGS-WTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCC-EEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 578889999999999887668886 69999998753333 33443 3353 699999999999995
No 192
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.75 E-value=6.6e-08 Score=110.81 Aligned_cols=111 Identities=28% Similarity=0.388 Sum_probs=78.2
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..|||+|||||+||++||..|++.|++|+|++.. .||..... .+ +.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~------------~GG~~~~~-------~~-----~~---------- 256 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER------------IGGQVKDT-------VG-----IE---------- 256 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC------------CCCccccC-------cC-----cc----------
Confidence 4699999999999999999999999999999752 22211000 00 00
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+. .+. + ......+...+.+.+++. ++.++ +++|+++..+ +..+.|.+.+|..+.+|.+|+|||+.
T Consensus 257 ~~-~~~----~--~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~--~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 257 NL-ISV----P--YTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETE--DGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred cc-ccc----C--CCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEec--CCeEEEEECCCCEEEeCEEEECCCCC
Confidence 00 000 0 123446777888888886 88887 5899999764 33456777888889999999999985
No 193
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.75 E-value=2.1e-07 Score=107.73 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecccccCCC
Q 048823 172 KREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGRTSMPAG 245 (699)
Q Consensus 172 ~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~~~~~~g 245 (699)
...+...|.+.+.+. +++++ ++.|++|+.+ +|+|+||... +|. .|.|+.||+|||+|... + ...+.+.+
T Consensus 118 G~~i~~~L~~~~~~~-gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~--~-~~~~~~~~ 192 (565)
T TIGR01816 118 GHAILHTLYQQNLKA-DTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI--Y-FSTTNAHT 192 (565)
T ss_pred hHHHHHHHHHHHHhC-CCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc--C-CCcCCCCC
Confidence 456888888888775 88887 6999999986 7899998752 454 68899999999999642 2 12344455
Q ss_pred Ccccc
Q 048823 246 RAGES 250 (699)
Q Consensus 246 r~g~~ 250 (699)
..|+.
T Consensus 193 ~tGdG 197 (565)
T TIGR01816 193 LTGDG 197 (565)
T ss_pred CccHH
Confidence 55554
No 194
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.75 E-value=7.7e-08 Score=112.66 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=86.3
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHc-CCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhh-------
Q 048823 74 IDERFDVIVVGGGHAGCEAALASARL-GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVA------- 145 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LAr~-G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~------- 145 (699)
++.++||+|||||++|+++|+.|++. |++|+|||+..+.... + ... ++ ....++-++.+|-. ..+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~-g--rA~-gl-~prtleiL~~lGl~-d~l~~~g~~~~ 102 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLEL-G--QAD-GI-ACRTMEMFQAFGFA-ERILKEAYWIN 102 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCC-C--eee-EE-ChHHHHHHHhccch-HHHHhhccccc
Confidence 34579999999999999999999995 9999999985221100 0 000 11 11222333333311 0000
Q ss_pred -----chh-----hhh--HHhhccCCCccccccccccCHHHHHHHHHHHHHccCC-eEEE-eeEEEEEEecCC-CCEEEE
Q 048823 146 -----DMC-----YLQ--KRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTAN-LCIR-EAMVTDILLGKN-DNVEGV 210 (699)
Q Consensus 146 -----d~~-----~i~--~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~g-v~i~-~~~V~~l~~e~~-g~v~gV 210 (699)
+.. .+. .+......+.. ..+....++..+.+.|.+.+.+.++ +.+. .++++++..+++ +..+.|
T Consensus 103 ~~~~~~~~~~~~~~i~r~~~~~~~~~~~~-~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v 181 (634)
T PRK08294 103 ETAFWKPDPADPSTIVRTGRVQDTEDGLS-EFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTV 181 (634)
T ss_pred ceEEEcCCCccccceeccccccccCCCCC-CCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEE
Confidence 000 000 00000000000 0011234666788888888877643 5654 689999976522 223445
Q ss_pred EEc------Cc--cEEecCeEEEecCCCCCCc
Q 048823 211 CTF------FG--MNFYAPSVVLTTGTFMSGK 234 (699)
Q Consensus 211 ~t~------dG--~~i~Ad~VVlAtG~~~~~~ 234 (699)
++. +| ++++||.||.|+|+.|..+
T Consensus 182 ~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR 213 (634)
T PRK08294 182 TLRRTDGEHEGEEETVRAKYVVGCDGARSRVR 213 (634)
T ss_pred EEEECCCCCCCceEEEEeCEEEECCCCchHHH
Confidence 543 35 5899999999999986444
No 195
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.73 E-value=1.8e-07 Score=105.85 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=47.5
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEE---EcCcc--EEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVC---TFFGM--NFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~---t~dG~--~i~Ad~VVlAtG~~~ 231 (699)
..+|...+.+.|.+.+.+.+|++++ +++|+++..++++. +.|. +.+|. +++||.||+|+|+|+
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 3578899999999988766688886 69999997642333 3343 34453 689999999999995
No 196
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.73 E-value=4.4e-08 Score=111.74 Aligned_cols=33 Identities=36% Similarity=0.599 Sum_probs=31.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
..|||+|||||+||++||+.|+++|++|+|||+
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 359999999999999999999999999999996
No 197
>PRK10262 thioredoxin reductase; Provisional
Probab=98.72 E-value=1.3e-07 Score=101.61 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=72.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
+.+||+|||||+||++||..|+++|++|+++|+. . .||... ....... +
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~----------~gg~~~---------------~~~~~~~----~- 53 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-E----------KGGQLT---------------TTTEVEN----W- 53 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-c----------CCCcee---------------cCceECC----C-
Confidence 4689999999999999999999999999999963 1 111100 0000000 0
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
|. .....+...+...+.+.+..+ ++.+...+|+.+... ++.+.+...++ .+.+|.||+|||+..
T Consensus 54 -----~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~~--~~~~~v~~~~~-~~~~d~vilAtG~~~ 117 (321)
T PRK10262 54 -----PG---DPNDLTGPLLMERMHEHATKF-ETEIIFDHINKVDLQ--NRPFRLTGDSG-EYTCDALIIATGASA 117 (321)
T ss_pred -----CC---CCCCCCHHHHHHHHHHHHHHC-CCEEEeeEEEEEEec--CCeEEEEecCC-EEEECEEEECCCCCC
Confidence 00 001234456677777777766 566665667777654 33344544444 689999999999863
No 198
>PRK06996 hypothetical protein; Provisional
Probab=98.71 E-value=7.5e-08 Score=106.75 Aligned_cols=149 Identities=17% Similarity=0.070 Sum_probs=85.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcC----CceeEEeeecccccCCCCCCCCCCCc-cchhhHHHHhhcCccchhhchhh
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLG----AKTLLLTLNIDKIAWQPCNPAVGGPA-KSQLVHEVDALGGEIGKVADMCY 149 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G----~kV~LlE~~~~~~g~~~c~~s~Gg~~-~~~l~~el~~lg~~~~~~~d~~~ 149 (699)
+..+||+|||||++|+++|+.|++.| ++|+|+|+... .. .++ ...+.. .....+-++.+|-..........
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~-~~--~~~-~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~ 84 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP-AA--SAN-DPRAIALSHGSRVLLETLGAWPADATPIEH 84 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC-Cc--CCC-CceEEEecHHHHHHHHhCCCchhcCCcccE
Confidence 34689999999999999999999987 47999998521 00 010 111111 11223334455421110000000
Q ss_pred hhH-------HhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc---cEE
Q 048823 150 LQK-------RVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG---MNF 218 (699)
Q Consensus 150 i~~-------~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG---~~i 218 (699)
+.. +................+++..+.+.|.+.+.+. ++.+. .++++++..+ +..+.|.+.+| +++
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~--~~~v~v~~~~~~g~~~i 161 (398)
T PRK06996 85 IHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGT-PVRWLTSTTAHAPAQD--ADGVTLALGTPQGARTL 161 (398)
T ss_pred EEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhC-CCEEEcCCeeeeeeec--CCeEEEEECCCCcceEE
Confidence 000 0000000000011122467788999999999887 67776 6889888654 33344566544 589
Q ss_pred ecCeEEEecCCC
Q 048823 219 YAPSVVLTTGTF 230 (699)
Q Consensus 219 ~Ad~VVlAtG~~ 230 (699)
+||.||.|+|..
T Consensus 162 ~a~lvIgADG~~ 173 (398)
T PRK06996 162 RARIAVQAEGGL 173 (398)
T ss_pred eeeEEEECCCCC
Confidence 999999999963
No 199
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.71 E-value=1.2e-07 Score=113.90 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=36.3
Q ss_pred cCcccccCCCCCEEEecccC-CCchHHHHHHHHHHHHHHHHHHhc
Q 048823 398 CYRSLMTKKVEGLFFSGQIN-GTTGYEEAAAQGIISGINAARHSD 441 (699)
Q Consensus 398 l~~~letk~i~gLf~AGqi~-G~~Gy~eA~a~G~~Ag~naa~~~~ 441 (699)
++.+++| .+||+|++||+. |......|.++|..||.|++....
T Consensus 799 VDetlqT-s~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 799 VDANGET-SLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred eCCCccc-CCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 4678888 489999999986 667778999999999999987654
No 200
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.69 E-value=1.8e-07 Score=96.47 Aligned_cols=151 Identities=24% Similarity=0.245 Sum_probs=81.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccc--------------hhhHH-HHhhc-----
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKS--------------QLVHE-VDALG----- 138 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~--------------~l~~e-l~~lg----- 138 (699)
.|||||+|.||++|+..+-..|-.|+|+|+.. .+|.-+...+.|-.+.. .++.+ +....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~-s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~ 89 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAG-SIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP 89 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccC-CcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence 49999999999999999999988899999962 22222222222221110 00110 00000
Q ss_pred CccchhhchhhhhHHhh-----------ccCCCccc----cccccccCHHHHHHHHH----HHHHccCC-eEEE-eeEEE
Q 048823 139 GEIGKVADMCYLQKRVL-----------NTSRGPAV----WALRAQTDKREYAMRMK----NIVESTAN-LCIR-EAMVT 197 (699)
Q Consensus 139 ~~~~~~~d~~~i~~~~~-----------~~s~g~~~----~~~r~~~d~~~~~~~L~----~~l~~~~g-v~i~-~~~V~ 197 (699)
..+...+..+....+|+ +.-.|..+ +..+.......+..+|. +...++|. +.+. +++|+
T Consensus 90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 01111111111122222 22112111 11111112223444444 44444554 4454 79999
Q ss_pred EEEecCCCCEEEEEEcC--cc--EEecCeEEEecCCCC
Q 048823 198 DILLGKNDNVEGVCTFF--GM--NFYAPSVVLTTGTFM 231 (699)
Q Consensus 198 ~l~~e~~g~v~gV~t~d--G~--~i~Ad~VVlAtG~~~ 231 (699)
+|..+ +|+|.||+..| |+ .+.++.||+|||+|.
T Consensus 170 ~il~n-~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 170 DILRN-NGKVSGVEYMDASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred eeecC-CCeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence 99965 89999998654 33 678999999999994
No 201
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.68 E-value=1.6e-06 Score=96.26 Aligned_cols=57 Identities=23% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc--EEecCeEEEecCCCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM--NFYAPSVVLTTGTFMS 232 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~VVlAtG~~~~ 232 (699)
.+.+.|.+.+++. |++++ ++.|+++..+ ++++..+.+.+|. .+.||.||+|+|.|.+
T Consensus 260 rL~~aL~~~l~~~-Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 260 RLQNALRRAFERL-GGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHHHHHhC-CCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCccc
Confidence 4567788888776 77876 6999999876 5667776665553 6899999999999853
No 202
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.68 E-value=2.3e-07 Score=104.54 Aligned_cols=146 Identities=16% Similarity=0.100 Sum_probs=79.6
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCC----Cc------cchhhHHHHhh-cCccchhh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGG----PA------KSQLVHEVDAL-GGEIGKVA 145 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg----~~------~~~l~~el~~l-g~~~~~~~ 145 (699)
..+|+|||||++|++||.+|.+.|++|+|+|++..-.|.+..++.... .. .+.+...+... ......+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 478999999999999999999999999999996222122111111100 00 00011111000 00000000
Q ss_pred chhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeE--E-EeeEEEEEEecCCCCEEEEEEcCc--c--EE
Q 048823 146 DMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLC--I-REAMVTDILLGKNDNVEGVCTFFG--M--NF 218 (699)
Q Consensus 146 d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~--i-~~~~V~~l~~e~~g~v~gV~t~dG--~--~i 218 (699)
| +.+..... ......+.......+.++|.+.++.. ++. + ++++|+.+... ++.+.|.+.++ . +.
T Consensus 90 d-----fp~~~~~~-~~~~~~~~fp~~~ev~~YL~~~a~~f-gl~~~I~~~t~V~~V~~~--~~~w~V~~~~~~~~~~~~ 160 (461)
T PLN02172 90 D-----FPFVPRFD-DESRDSRRYPSHREVLAYLQDFAREF-KIEEMVRFETEVVRVEPV--DGKWRVQSKNSGGFSKDE 160 (461)
T ss_pred C-----CCCCcccc-cccCcCCCCCCHHHHHHHHHHHHHHc-CCcceEEecCEEEEEeec--CCeEEEEEEcCCCceEEE
Confidence 0 00100000 00000011224567888899888887 555 4 47999999864 34566766543 2 45
Q ss_pred ecCeEEEecCCCC
Q 048823 219 YAPSVVLTTGTFM 231 (699)
Q Consensus 219 ~Ad~VVlAtG~~~ 231 (699)
.+|.||+|||.+.
T Consensus 161 ~~d~VIvAtG~~~ 173 (461)
T PLN02172 161 IFDAVVVCNGHYT 173 (461)
T ss_pred EcCEEEEeccCCC
Confidence 7899999999764
No 203
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.68 E-value=2.2e-07 Score=113.79 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=43.9
Q ss_pred CcccccCCCCCEEEecccC-CCchHHHHHHHHHHHHHHHHHHhcCCCCccCCccc
Q 048823 399 YRSLMTKKVEGLFFSGQIN-GTTGYEEAAAQGIISGINAARHSDGKSLIVLERES 452 (699)
Q Consensus 399 ~~~letk~i~gLf~AGqi~-G~~Gy~eA~a~G~~Ag~naa~~~~~~~~~~~~r~~ 452 (699)
+.+++| ++||+|++||+. |......|+++|..||.++..++.+..+...++++
T Consensus 713 ~~~~~T-s~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~~~~~~~ 766 (1006)
T PRK12775 713 ESTQST-NLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGKKWPITAEE 766 (1006)
T ss_pred ccCcCC-CCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccc
Confidence 346777 499999999975 55667899999999999999999988776666665
No 204
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.66 E-value=1.9e-07 Score=108.52 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=85.0
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCC-CCCc-cchhhHHHHhhcCc-cchhhch----
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAV-GGPA-KSQLVHEVDALGGE-IGKVADM---- 147 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~-Gg~~-~~~l~~el~~lg~~-~~~~~d~---- 147 (699)
...++|+|||||++|+++|+.|++.|++|+|+|+........ ... +++. .....+-++.+|-. ...+...
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~---G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~ 155 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGE---GKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCIT 155 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccc---cccCcccccCHHHHHHHHHcCcchHHHHHhhcCcc
Confidence 456899999999999999999999999999999953111000 000 1111 11223334444311 0000000
Q ss_pred --------hhhhHHhh-ccCC-Cccc-c--ccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcC
Q 048823 148 --------CYLQKRVL-NTSR-GPAV-W--ALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFF 214 (699)
Q Consensus 148 --------~~i~~~~~-~~s~-g~~~-~--~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~d 214 (699)
.+....+. .... .+.. . .....+.+..+.+.|.+.+.. .+....++|+++..+ ++.+ .|++.+
T Consensus 156 ~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~-~d~V-tV~~~d 231 (668)
T PLN02927 156 GDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDS-GDKV-TVVLEN 231 (668)
T ss_pred cceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEe-CCEE-EEEECC
Confidence 00000000 0000 0000 0 001135677777777654421 222235799999765 4444 488889
Q ss_pred ccEEecCeEEEecCCCCCCce
Q 048823 215 GMNFYAPSVVLTTGTFMSGKI 235 (699)
Q Consensus 215 G~~i~Ad~VVlAtG~~~~~~~ 235 (699)
|.++.||.||.|+|.++..+-
T Consensus 232 G~ti~aDlVVGADG~~S~vR~ 252 (668)
T PLN02927 232 GQRYEGDLLVGADGIWSKVRN 252 (668)
T ss_pred CCEEEcCEEEECCCCCcHHHH
Confidence 988999999999999975443
No 205
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.65 E-value=1.3e-07 Score=114.02 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..+||+|||||+||++||+.|++.|++|+|+|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3479999999999999999999999999999984
No 206
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.65 E-value=1.6e-07 Score=112.41 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=36.6
Q ss_pred cCcccccCCCCCEEEecccCC-CchHHHHHHHHHHHHHHHHHHhcCC
Q 048823 398 CYRSLMTKKVEGLFFSGQING-TTGYEEAAAQGIISGINAARHSDGK 443 (699)
Q Consensus 398 l~~~letk~i~gLf~AGqi~G-~~Gy~eA~a~G~~Ag~naa~~~~~~ 443 (699)
.++.++| ++||+|.+||+.+ .....+|+++|..||.++.+++.++
T Consensus 707 vd~~~~T-s~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~~ 752 (752)
T PRK12778 707 VDEEMQS-SIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSSK 752 (752)
T ss_pred eCCCCCC-CCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4455666 5899999999875 4456799999999999999998764
No 207
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=1.3e-07 Score=98.40 Aligned_cols=142 Identities=19% Similarity=0.162 Sum_probs=88.3
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee---cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhh
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN---IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQ 151 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~---~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~ 151 (699)
.++||.+|||||..|+.+|..++..|++|.|+|.. .++|.+..|.|..-.+..+....++.....+-........+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 35799999999999999999999999999999986 345556666665444433444444433322222221222334
Q ss_pred HHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEecCeEEEecCC
Q 048823 152 KRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFYAPSVVLTTGT 229 (699)
Q Consensus 152 ~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~VVlAtG~ 229 (699)
|+.+...+...+. ++...+++.+.+ .+|.++.++..-+. ++. +.|...||. .|+|+.+++|+|+
T Consensus 98 W~~ik~krdayi~---------RLngIY~~~L~k-~~V~~i~G~a~f~~---~~~-v~V~~~d~~~~~Ytak~iLIAtGg 163 (478)
T KOG0405|consen 98 WKVIKQKRDAYIL---------RLNGIYKRNLAK-AAVKLIEGRARFVS---PGE-VEVEVNDGTKIVYTAKHILIATGG 163 (478)
T ss_pred HHHHHhhhhHHHH---------HHHHHHHhhccc-cceeEEeeeEEEcC---CCc-eEEEecCCeeEEEecceEEEEeCC
Confidence 4444433322111 222233344444 48888877766442 333 457778884 4899999999998
Q ss_pred C
Q 048823 230 F 230 (699)
Q Consensus 230 ~ 230 (699)
.
T Consensus 164 ~ 164 (478)
T KOG0405|consen 164 R 164 (478)
T ss_pred c
Confidence 6
No 208
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.64 E-value=2.8e-07 Score=103.43 Aligned_cols=137 Identities=20% Similarity=0.117 Sum_probs=79.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCc-eeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHH
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAK-TLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKR 153 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~k-V~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~ 153 (699)
..++||+|||||.+|+++|++|.+.|.. ++++|++ ...||.+.-..... ..... .....++.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~----------~~~Gg~W~~~ry~~------l~~~~-p~~~~~~~ 68 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKR----------DDVGGTWRYNRYPG------LRLDS-PKWLLGFP 68 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEcc----------CCcCCcchhccCCc------eEECC-chheeccC
Confidence 4568999999999999999999999998 9999995 33343321110000 00000 00000111
Q ss_pred hhccCCCccccccccccCHHHHHHHHHHHHHccCCeE-E-EeeEEEEEEecCCCCEEEEEEcCccE--EecCeEEEecCC
Q 048823 154 VLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLC-I-REAMVTDILLGKNDNVEGVCTFFGMN--FYAPSVVLTTGT 229 (699)
Q Consensus 154 ~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~-i-~~~~V~~l~~e~~g~v~gV~t~dG~~--i~Ad~VVlAtG~ 229 (699)
.+... +...+ .+.......+...++.+.... + +++.|+.+..+++++.+.|++.+|.. +.||.||+|||.
T Consensus 69 ~~p~~-~~~~~-----~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 69 FLPFR-WDEAF-----APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred CCccC-CcccC-----CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 11110 01111 112225556666666652222 2 24555556666567789999998875 459999999998
Q ss_pred CCCCc
Q 048823 230 FMSGK 234 (699)
Q Consensus 230 ~~~~~ 234 (699)
++...
T Consensus 143 ~~~P~ 147 (443)
T COG2072 143 LSEPY 147 (443)
T ss_pred CCCCC
Confidence 75443
No 209
>PRK07846 mycothione reductase; Reviewed
Probab=98.64 E-value=1.3e-07 Score=106.49 Aligned_cols=131 Identities=12% Similarity=0.060 Sum_probs=71.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
+|||+|||||++|..||..+ .|.+|+|||++ .++|-+.+|.|+.--....++.+.+..... ++.......+.+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~-~g~~~~~~~~~~~~ 77 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAAR-LGVDAELDGVRWPD 77 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHh-CCccCCCCcCCHHH
Confidence 38999999999999988763 59999999985 445555666665432222223222221100 00000000000000
Q ss_pred hccCCCccccccccccCHHHHHHH-----HHHH-HHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecC
Q 048823 155 LNTSRGPAVWALRAQTDKREYAMR-----MKNI-VESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTG 228 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~~~-----L~~~-l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG 228 (699)
+.. ........ .... ++. .|++++..++..+. .. .|.+.+|+++.+|.+|+|||
T Consensus 78 ~~~-------------~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~a~~~~---~~---~V~v~~g~~~~~d~lViATG 137 (451)
T PRK07846 78 IVS-------------RVFGRIDPIAAGGEEYRGRDT-PNIDVYRGHARFIG---PK---TLRTGDGEEITADQVVIAAG 137 (451)
T ss_pred HHH-------------HHHHHHHHHhccchhhhhhhh-CCcEEEEEEEEEec---CC---EEEECCCCEEEeCEEEEcCC
Confidence 000 00011111 1111 333 48999887776552 22 25556777899999999999
Q ss_pred CC
Q 048823 229 TF 230 (699)
Q Consensus 229 ~~ 230 (699)
+.
T Consensus 138 s~ 139 (451)
T PRK07846 138 SR 139 (451)
T ss_pred CC
Confidence 75
No 210
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.64 E-value=3.1e-07 Score=111.53 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
...+|+|||||+||++||+.|++.|++|+|+|+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 3578999999999999999999999999999984
No 211
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.61 E-value=2.5e-07 Score=103.16 Aligned_cols=145 Identities=16% Similarity=0.107 Sum_probs=82.9
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CceeEEeeecccccCCCCCCCCCCC-ccchhhHHHHhhcCc--cchhhchh-----h
Q 048823 79 DVIVVGGGHAGCEAALASARLG-AKTLLLTLNIDKIAWQPCNPAVGGP-AKSQLVHEVDALGGE--IGKVADMC-----Y 149 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~~~~~~g~~~c~~s~Gg~-~~~~l~~el~~lg~~--~~~~~d~~-----~ 149 (699)
+|+|||||++|+++|+.|++.| .+|+|+|+... ... +. .++ ......+-++.+|-. +....+.. .
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~-~~~--~G---~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 75 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA-FGE--VG---AGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQD 75 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc-CCC--Cc---cceeeCccHHHHHHHcCChhHHHHHhcCCCccCcc
Confidence 5999999999999999999998 59999999622 111 00 111 112233444444311 00000000 0
Q ss_pred hhHHhhccCCCccc------cccccccCHHHHHHHHHHHHHccCCeEE-EeeEEEEEEecCCCCEEEEEEcCccEEecCe
Q 048823 150 LQKRVLNTSRGPAV------WALRAQTDKREYAMRMKNIVESTANLCI-REAMVTDILLGKNDNVEGVCTFFGMNFYAPS 222 (699)
Q Consensus 150 i~~~~~~~s~g~~~------~~~r~~~d~~~~~~~L~~~l~~~~gv~i-~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~ 222 (699)
..+.+.....+... ......+++..+...|.+.+. +..+ ++++|+++..+ ++. +.|.+.+|.++.||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~v~~~~~v~~i~~~-~~~-~~v~~~~g~~~~ad~ 150 (414)
T TIGR03219 76 IWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP---EGIASFGKRATQIEEQ-AEE-VQVLFTDGTEYRCDL 150 (414)
T ss_pred eeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC---CceEEcCCEEEEEEec-CCc-EEEEEcCCCEEEeeE
Confidence 00000000000000 001123577778877777653 3344 47999999765 333 567888898999999
Q ss_pred EEEecCCCCCCc
Q 048823 223 VVLTTGTFMSGK 234 (699)
Q Consensus 223 VVlAtG~~~~~~ 234 (699)
||+|+|.++..+
T Consensus 151 vVgADG~~S~vR 162 (414)
T TIGR03219 151 LIGADGIKSALR 162 (414)
T ss_pred EEECCCccHHHH
Confidence 999999987544
No 212
>PLN02612 phytoene desaturase
Probab=98.59 E-value=9.7e-06 Score=93.99 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.+.+.|.+.+++. |.++. ++.|++|..++++.+++|.+.+|+.+.||.||+|+...
T Consensus 309 ~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~ 365 (567)
T PLN02612 309 RLCMPIVDHFQSL-GGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVD 365 (567)
T ss_pred HHHHHHHHHHHhc-CCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHH
Confidence 3456666666666 66665 89999998865666788898889899999999998753
No 213
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.58 E-value=1.6e-07 Score=105.91 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=73.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee--cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN--IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~--~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
+|||+|||+|++|..||.. ..|.+|+|||++ .++|-+.+|.|+..-....+..+.+.....+ +.......+++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~-g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARL-GIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhcc-CeeCCCCccCHHH
Confidence 5999999999999998654 469999999986 4556667777776444333444444332111 0000000111111
Q ss_pred hccCCCccccccccccCHHHHHHH-HHHHHH-ccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 155 LNTSRGPAVWALRAQTDKREYAMR-MKNIVE-STANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~~~-L~~~l~-~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+...+.. .. ...+... ...... +..|++++.....-. + .+ .|.+.+|.++.+|.||+|||+.
T Consensus 79 ~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~--~~--~V~~~~g~~~~~d~lIiATGs~ 142 (452)
T TIGR03452 79 IVSRVFG-------DR-IDPIAAGGEDYRRGDETPNIDVYDGHARFV--G--PR--TLRTGDGEEITGDQIVIAAGSR 142 (452)
T ss_pred HHHHhhh-------hH-hHHHhccchHhhhhcccCCeEEEEEEEEEe--c--CC--EEEECCCcEEEeCEEEEEECCC
Confidence 1100000 00 0001000 111111 114899987655422 2 22 2455677789999999999986
No 214
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.54 E-value=1.3e-07 Score=100.43 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=41.5
Q ss_pred HHHHHHHHHccCCeEEE-eeEEEEEEec-CCCCEEEEEEcC--cc----EEecCeEEEecCCCCCCcee
Q 048823 176 AMRMKNIVESTANLCIR-EAMVTDILLG-KNDNVEGVCTFF--GM----NFYAPSVVLTTGTFMSGKIW 236 (699)
Q Consensus 176 ~~~L~~~l~~~~gv~i~-~~~V~~l~~e-~~g~v~gV~t~d--G~----~i~Ad~VVlAtG~~~~~~~~ 236 (699)
...|...+ +.+|++++ ++.|+.|..+ ++++++||++.+ +. .+.++.||+|+|++...+++
T Consensus 196 ~~~L~~a~-~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 196 TTYLPPAL-KRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHHHHT-TTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred hcccchhh-ccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 33444444 55799998 6999999764 367889998654 32 56789999999997544443
No 215
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.53 E-value=1.2e-06 Score=84.28 Aligned_cols=138 Identities=17% Similarity=0.146 Sum_probs=76.3
Q ss_pred EEECCChHHHHHHHHHHHc-----CCceeEEeeecccccCCCCCCCCCCCccch-hhHHHHhh-cCccchhhchh-hhhH
Q 048823 81 IVVGGGHAGCEAALASARL-----GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQ-LVHEVDAL-GGEIGKVADMC-YLQK 152 (699)
Q Consensus 81 vVIGgG~AGl~AA~~LAr~-----G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~-l~~el~~l-g~~~~~~~d~~-~i~~ 152 (699)
+|||||++|++++.+|.+. ..+|+|+|+..- |. |+..... ....+-+. ...|....+.. ..-.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~--G~-------G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~ 71 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF--GA-------GGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFV 71 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc--cc-------cccCCCCCChHHhhcccccccccccccCCCCHH
Confidence 4999999999999999987 468999998411 10 1111111 11111111 11222222222 2223
Q ss_pred HhhccCCC--ccccccccccCHHHHHHHHHHHHHc----c-CCeEE--EeeEEEEEEecCCCCEEEEEEcCccEEecCeE
Q 048823 153 RVLNTSRG--PAVWALRAQTDKREYAMRMKNIVES----T-ANLCI--REAMVTDILLGKNDNVEGVCTFFGMNFYAPSV 223 (699)
Q Consensus 153 ~~~~~s~g--~~~~~~r~~~d~~~~~~~L~~~l~~----~-~gv~i--~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~V 223 (699)
.|+..... ...........|..|-++|.+.+.. . .++.+ +..+|+++... ++. +.|.+.+|..+.+|.|
T Consensus 72 ~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~-~~~-~~v~~~~g~~~~~d~V 149 (156)
T PF13454_consen 72 DWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRD-DDG-YRVVTADGQSIRADAV 149 (156)
T ss_pred HHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEc-CCc-EEEEECCCCEEEeCEE
Confidence 33333221 0111112233455555555444332 1 24444 56899999876 333 6788899999999999
Q ss_pred EEecCC
Q 048823 224 VLTTGT 229 (699)
Q Consensus 224 VlAtG~ 229 (699)
|+|||.
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999994
No 216
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.52 E-value=2.1e-07 Score=105.17 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=35.9
Q ss_pred ccccCCCCCEEEecccCCC-chHHHHHHHHHHHHHHHHHHhcCCC
Q 048823 401 SLMTKKVEGLFFSGQINGT-TGYEEAAAQGIISGINAARHSDGKS 444 (699)
Q Consensus 401 ~letk~i~gLf~AGqi~G~-~Gy~eA~a~G~~Ag~naa~~~~~~~ 444 (699)
+++| .+||+|.+||+.+. .....|..+|..||.|+.+++.|+.
T Consensus 412 ~~~T-s~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 412 TGRT-SLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred CCcc-CCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5666 48999999998854 4567899999999999999988763
No 217
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.51 E-value=3.7e-06 Score=92.00 Aligned_cols=105 Identities=22% Similarity=0.194 Sum_probs=73.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 78 FDVIVVGGGHAGCEAALASARLG--AKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..|||||||.+|+.+|..|++.- .+|+|||++ +..- .. .+..++ +
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~----------~~hl--~~-plL~ev----------a---------- 50 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR----------DYHL--FT-PLLYEV----------A---------- 50 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC----------Cccc--cc-hhhhhh----------h----------
Confidence 35999999999999999999974 899999984 0000 00 000100 0
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
....+.......+++.+....++.++..+|++|..+ .. .|.+.++..+..|.+|+|+|+-
T Consensus 51 -----------~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~-~k---~V~~~~~~~i~YD~LVvalGs~ 110 (405)
T COG1252 51 -----------TGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRD-AK---KVTLADLGEISYDYLVVALGSE 110 (405)
T ss_pred -----------cCCCChhheeccHHHHhcccCceEEEEEEEEEEccc-CC---EEEeCCCccccccEEEEecCCc
Confidence 002334444555666677565799999999999875 32 3667776689999999999985
No 218
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.51 E-value=3.4e-08 Score=107.95 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=48.4
Q ss_pred ccccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEecCCCCEEEEEEcC---cc--EEecCeEEEecCCCCCC
Q 048823 167 RAQTDKREYAMRMKNIVESTANLCIRE-AMVTDILLGKNDNVEGVCTFF---GM--NFYAPSVVLTTGTFMSG 233 (699)
Q Consensus 167 r~~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e~~g~v~gV~t~d---G~--~i~Ad~VVlAtG~~~~~ 233 (699)
.+|.|-..+.-.+.-.+..+ |..+.+ .+|.++.+++++++.|+...| |+ .|+|+.||.|||+|+..
T Consensus 218 DGQ~nDaRmnl~vAlTA~r~-GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDs 289 (680)
T KOG0042|consen 218 DGQHNDARMNLAVALTAARN-GATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDS 289 (680)
T ss_pred cCCCchHHHHHHHHHHHHhc-chhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHH
Confidence 34555555555555555565 777775 899999988778898988765 43 78899999999999643
No 219
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.50 E-value=7.6e-07 Score=97.76 Aligned_cols=135 Identities=16% Similarity=0.057 Sum_probs=73.0
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCceeEEeeecccccCCCCCCCCCCCccchhhH-HHHhhcCccchhhchhhhhHHhh
Q 048823 79 DVIVVGGGHAGCEAALASARL--GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVH-EVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~-el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
||+|||||+||+++|+.|++. |++|+|+|+.....++..+...-.+. +.... .++.+-.. .+.+ ..+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~--~~~~~~~~~~~v~~--~W~~-~~v~~--- 72 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDL--SDAQHAWLADLVQT--DWPG-YEVRF--- 72 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceeccccc--chhhhhhhhhhheE--eCCC-CEEEC---
Confidence 899999999999999999987 99999999952111111100000000 00010 01111000 0000 00000
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.........+-..+++..|.+.+.+.+.. ++ .++++|+.+. .+. |++.+|.++.|+.||.|+|..+
T Consensus 73 -~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~--~i-~~~~~V~~v~---~~~---v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 73 -PKYRRKLKTAYRSMTSTRFHEGLLQAFPE--GV-ILGRKAVGLD---ADG---VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred -cchhhhcCCCceEEEHHHHHHHHHHhhcc--cE-EecCEEEEEe---CCE---EEECCCCEEEeeEEEECCCCCC
Confidence 00000000111245677788887766643 32 3378888883 232 5557888999999999999763
No 220
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.50 E-value=2e-07 Score=100.05 Aligned_cols=32 Identities=38% Similarity=0.559 Sum_probs=30.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
-+|+|||||++|+++|.+|.+.|.+|+|+|+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~ 34 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESR 34 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeec
Confidence 46999999999999999999999999999995
No 221
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.49 E-value=9.2e-06 Score=92.23 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHHHHHHHHccCCeEEE-eeEEEEEEecC--CC--CEEEEEEcCc---cEEecCeEEEecCCCCC
Q 048823 175 YAMRMKNIVESTANLCIR-EAMVTDILLGK--ND--NVEGVCTFFG---MNFYAPSVVLTTGTFMS 232 (699)
Q Consensus 175 ~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~--~g--~v~gV~t~dG---~~i~Ad~VVlAtG~~~~ 232 (699)
+.+.+.+.+++. |+++. ++.|++|..++ ++ ++++|++.+| +.+.||.||+|+..+..
T Consensus 221 l~~pl~~~L~~~-Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~ 285 (474)
T TIGR02732 221 LTKPILEYIEAR-GGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGI 285 (474)
T ss_pred HHHHHHHHHHHC-CCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHH
Confidence 456677888886 66775 89999998752 12 3778877654 46899999999998743
No 222
>PLN02487 zeta-carotene desaturase
Probab=98.48 E-value=1.5e-05 Score=91.78 Aligned_cols=57 Identities=12% Similarity=-0.027 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHccCCeEE-EeeEEEEEEecC--CC--CEEEEEE---cCccEEecCeEEEecCCCC
Q 048823 174 EYAMRMKNIVESTANLCI-REAMVTDILLGK--ND--NVEGVCT---FFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i-~~~~V~~l~~e~--~g--~v~gV~t---~dG~~i~Ad~VVlAtG~~~ 231 (699)
.+.+.+.+.+++. |.++ +.+.|..|..+. ++ ++++|.+ .+++.+.+|.||+|++.+.
T Consensus 296 ~l~~pl~~~L~~~-Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDR-GGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHH
Confidence 3667788888887 5565 479999998762 22 3788988 3445789999999999874
No 223
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.43 E-value=1.5e-06 Score=102.39 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=36.6
Q ss_pred ccccCCCCCEEEecccCC-CchHHHHHHHHHHHHHHHHHHhcCCCC
Q 048823 401 SLMTKKVEGLFFSGQING-TTGYEEAAAQGIISGINAARHSDGKSL 445 (699)
Q Consensus 401 ~letk~i~gLf~AGqi~G-~~Gy~eA~a~G~~Ag~naa~~~~~~~~ 445 (699)
+++| .+||+|++||+.+ ..-...|+++|..||.|+.+++.|+++
T Consensus 461 ~~~T-s~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g~~~ 505 (652)
T PRK12814 461 TLQT-SVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNGKPV 505 (652)
T ss_pred CCcC-CCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5666 4899999999874 344579999999999999999998764
No 224
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.2e-07 Score=94.59 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=80.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
..|||+|||||+||.+||+++||.|.++-|+--. +||. ..... ++.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer------------fGGQ---------------vldT~---~IE---- 255 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER------------FGGQ---------------VLDTM---GIE---- 255 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh------------hCCe---------------ecccc---chh----
Confidence 4599999999999999999999999998777421 2221 11000 000
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEec-CCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIRE-AMVTDILLG-KNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e-~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
|.-.-| ..+...+..+|.+.++++ .|++++ .+++++... ..+....|++.+|..+.++.||++||+.
T Consensus 256 NfIsv~-------~teGpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 256 NFISVP-------ETEGPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred heeccc-------cccchHHHHHHHHHHhhc-CchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 000001 234457888999999988 888886 777777652 2366788999999999999999999974
No 225
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.40 E-value=1.4e-06 Score=102.82 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..+|+|||||+||+++|..|++.|++|+|+|+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 468999999999999999999999999999984
No 226
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=1.7e-06 Score=98.58 Aligned_cols=55 Identities=25% Similarity=0.200 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCC
Q 048823 173 REYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGT 229 (699)
Q Consensus 173 ~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~ 229 (699)
..+.++|.+.++++ |++|. +++|++|..+ +|+.+++++.+|..+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~~-Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREH-GGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHc-CCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 35678889999988 77776 7999999997 77788888888877899999998886
No 227
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.40 E-value=4.8e-06 Score=93.88 Aligned_cols=31 Identities=35% Similarity=0.601 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|+|||||..|+.+|..|++.|.+|+|+++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 6999999999999999999999999999983
No 228
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.34 E-value=3e-06 Score=97.20 Aligned_cols=91 Identities=25% Similarity=0.315 Sum_probs=65.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-+|+|||||..|+++|..|++.|.+|+|+++. +...
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~----------~~l~---------------------------------- 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA----------DELK---------------------------------- 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC----------CcCC----------------------------------
Confidence 37999999999999999999999999999972 0000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc-----cEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG-----MNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG-----~~i~Ad~VVlAtG~~ 230 (699)
. ...+.+.+.+..|+.++ ++.|+++..+ ++++.+|.+.++ +++.+|.||+|+|..
T Consensus 389 ------------~-----~~~l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 389 ------------A-----DKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred ------------h-----hHHHHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 0 01133444443589987 5888888643 467777776542 368999999999964
No 229
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.34 E-value=5.9e-06 Score=92.49 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 174 EYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.+.+.+.+.++..++...++++|++|..++++++++|++.+|++++|+.||....-+
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence 566777777777755545689999998874578899999999999999998855544
No 230
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.34 E-value=1.4e-05 Score=91.05 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHccCCeEEE-eeEEEEEEec-CC--CCEEEEEEc-Ccc-----EEecCeEEEecCCCCCCc
Q 048823 173 REYAMRMKNIVESTANLCIR-EAMVTDILLG-KN--DNVEGVCTF-FGM-----NFYAPSVVLTTGTFMSGK 234 (699)
Q Consensus 173 ~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e-~~--g~v~gV~t~-dG~-----~i~Ad~VVlAtG~~~~~~ 234 (699)
..+...|.+.++++ ||++. ++.|++|..+ ++ ++|+||.+. +|. ...+|.||+|+|++..+.
T Consensus 226 eSLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 226 ESLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred hHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcccc
Confidence 45678888999998 88886 7999999874 23 568888875 332 345899999999996443
No 231
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=3.2e-06 Score=94.22 Aligned_cols=130 Identities=23% Similarity=0.205 Sum_probs=79.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccc---------hhhHHHHhhcCccchhhchh
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKS---------QLVHEVDALGGEIGKVADMC 148 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~---------~l~~el~~lg~~~~~~~d~~ 148 (699)
-+|+|||||+|||++|..|.+.|+.|+++||. ..+||.+.- .+++.+.-
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~----------~~iGGlW~y~~~~~~~~ss~Y~~l~t------------ 64 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREGHEVVVFERT----------DDIGGLWKYTENVEVVHSSVYKSLRT------------ 64 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCCCCceEEEec----------CCccceEeecCcccccccchhhhhhc------------
Confidence 57999999999999999999999999999995 444544321 11111110
Q ss_pred hhhHHhhccCCCcccc-ccccccCHHHHHHHHHHHHHccCCeE--E-EeeEEEEEEecCCCCEEEEEEcCc----cEEec
Q 048823 149 YLQKRVLNTSRGPAVW-ALRAQTDKREYAMRMKNIVESTANLC--I-REAMVTDILLGKNDNVEGVCTFFG----MNFYA 220 (699)
Q Consensus 149 ~i~~~~~~~s~g~~~~-~~r~~~d~~~~~~~L~~~l~~~~gv~--i-~~~~V~~l~~e~~g~v~gV~t~dG----~~i~A 220 (699)
.....+...+.-|... .++-..+...+.++|...++.. ++. + ++++|..+... +..-|.|.+.++ ...-+
T Consensus 65 n~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F-~l~~~i~f~~~v~~v~~~-~~gkW~V~~~~~~~~~~~~if 142 (448)
T KOG1399|consen 65 NLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHF-DLLKMINFNTEVVRVDSI-DKGKWRVTTKDNGTQIEEEIF 142 (448)
T ss_pred cCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhc-ChhhheEecccEEEEeec-cCCceeEEEecCCcceeEEEe
Confidence 0001111111111111 1111235568889999988887 432 3 35777777654 213566776544 36679
Q ss_pred CeEEEecCCCC
Q 048823 221 PSVVLTTGTFM 231 (699)
Q Consensus 221 d~VVlAtG~~~ 231 (699)
|.||+|||.+.
T Consensus 143 d~VvVctGh~~ 153 (448)
T KOG1399|consen 143 DAVVVCTGHYV 153 (448)
T ss_pred eEEEEcccCcC
Confidence 99999999883
No 232
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=89.62 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=52.6
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEc---C-ccEEecCeEEEecCCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTF---F-GMNFYAPSVVLTTGTFMS 232 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~---d-G~~i~Ad~VVlAtG~~~~ 232 (699)
+|+++..|.+.+...+++.++|+++-+.|.++..+ .+++.+|... + +....++.+|++.|+|+.
T Consensus 142 aqvhP~lFc~~i~sea~k~~~V~lv~Gkv~ev~dE-k~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 142 AQVHPYLFCHFILSEAEKRGGVKLVFGKVKEVSDE-KHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred ceeCHHHHHHHHHHHHHhhcCeEEEEeeeEEeecc-cccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 57899999999999999998999999999999743 6777776654 2 346678999999999963
No 233
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.32 E-value=1.7e-06 Score=87.79 Aligned_cols=139 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCc----------cchhhHHHHhhc--Cccchhhc
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPA----------KSQLVHEVDALG--GEIGKVAD 146 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~----------~~~l~~el~~lg--~~~~~~~d 146 (699)
+++|||+|++|++||+.|+..|..|+|+||+.+..|.+...-.-+|.. ...+.+.++.+. +....+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 599999999999999999999999999999755444443322223221 112333333332 12211111
Q ss_pred hhhhhHHh--hccC--CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc-EEec
Q 048823 147 MCYLQKRV--LNTS--RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM-NFYA 220 (699)
Q Consensus 147 ~~~i~~~~--~~~s--~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~-~i~A 220 (699)
.- ..++- .... ..|.++ . -=+.++.+.+.. ..++. +++|+.+... ++.+.+.+++|. ...+
T Consensus 83 ~~-~~~~~~~~~~~~d~~pyvg----~----pgmsalak~LAt--dL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~ 149 (331)
T COG3380 83 AV-WTFTGDGSPPRGDEDPYVG----E----PGMSALAKFLAT--DLTVVLETRVTEVART--DNDWTLHTDDGTRHTQF 149 (331)
T ss_pred cc-cccccCCCCCCCCCCcccc----C----cchHHHHHHHhc--cchhhhhhhhhhheec--CCeeEEEecCCCccccc
Confidence 00 00000 0000 001111 0 013445555544 45554 7999999864 567889997764 6789
Q ss_pred CeEEEecCCC
Q 048823 221 PSVVLTTGTF 230 (699)
Q Consensus 221 d~VVlAtG~~ 230 (699)
|.||+|.=.-
T Consensus 150 d~vvla~PAP 159 (331)
T COG3380 150 DDVVLAIPAP 159 (331)
T ss_pred ceEEEecCCC
Confidence 9999997653
No 234
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.31 E-value=8.7e-07 Score=88.01 Aligned_cols=30 Identities=53% Similarity=0.832 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
||+|||||+||+.||..|++.|.+|+|+|+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence 799999999999999999999999999987
No 235
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.29 E-value=3.4e-06 Score=96.56 Aligned_cols=143 Identities=19% Similarity=0.099 Sum_probs=76.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||++|+++|..|.+.|+.|+++|+. ..+||.+...-..+ +.......... ......+...+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~----------~~iGG~W~~~~~~~-~g~~~~y~sl~--~n~sk~~~~fs 69 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKS----------DDIGGLWRYTENPE-DGRSSVYDSLH--TNTSKEMMAFS 69 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESS----------SSSSGGGCHSTTCC-CSEGGGSTT-B---SS-GGGSCCT
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecC----------CCCCccCeeCCcCC-CCccccccceE--EeeCchHhcCC
Confidence 4999999999999999999999999999995 44555432100000 00000000000 00000011011
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeE-E-EeeEEEEEEecCCC---CEEEEEEcC-cc--EEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLC-I-REAMVTDILLGKND---NVEGVCTFF-GM--NFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~-i-~~~~V~~l~~e~~g---~v~gV~t~d-G~--~i~Ad~VVlAtG~~ 230 (699)
.-|.............+.++|...++.++-.. + ++++|+++...++. ..|.|++.+ |. +-..|.||+|||.+
T Consensus 70 dfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 70 DFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp TS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence 00100000012356788899999998872222 3 37999999875332 356677654 42 33579999999988
Q ss_pred CCCc
Q 048823 231 MSGK 234 (699)
Q Consensus 231 ~~~~ 234 (699)
....
T Consensus 150 ~~P~ 153 (531)
T PF00743_consen 150 SKPN 153 (531)
T ss_dssp SCES
T ss_pred CCCC
Confidence 6443
No 236
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.27 E-value=9.8e-06 Score=68.58 Aligned_cols=78 Identities=27% Similarity=0.327 Sum_probs=59.3
Q ss_pred EEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccCC
Q 048823 80 VIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTSR 159 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s~ 159 (699)
|+|||||..|++.|..+++.|.+|+|+++. +.+. .
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~----------~~~~-------------------~---------------- 36 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERS----------DRLL-------------------P---------------- 36 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESS----------SSSS-------------------T----------------
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEecc----------chhh-------------------h----------------
Confidence 899999999999999999999999999983 1110 0
Q ss_pred CccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc
Q 048823 160 GPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG 215 (699)
Q Consensus 160 g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG 215 (699)
..++ .....+.+.+++. |++++ ++.++++..++++ +. |++.||
T Consensus 37 ---------~~~~-~~~~~~~~~l~~~-gV~v~~~~~v~~i~~~~~~-~~-V~~~~g 80 (80)
T PF00070_consen 37 ---------GFDP-DAAKILEEYLRKR-GVEVHTNTKVKEIEKDGDG-VE-VTLEDG 80 (80)
T ss_dssp ---------TSSH-HHHHHHHHHHHHT-TEEEEESEEEEEEEEETTS-EE-EEEETS
T ss_pred ---------hcCH-HHHHHHHHHHHHC-CCEEEeCCEEEEEEEeCCE-EE-EEEecC
Confidence 1122 3555667777776 99997 6999999977434 66 888876
No 237
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.25 E-value=1.4e-06 Score=85.13 Aligned_cols=135 Identities=24% Similarity=0.263 Sum_probs=77.1
Q ss_pred cccEEEECCChHHHHHHHHHHHc--CCceeEEeeecccccCCCCCCCCCCCccchh-hHHHHhhcCccchhhchhhhhHH
Q 048823 77 RFDVIVVGGGHAGCEAALASARL--GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQL-VHEVDALGGEIGKVADMCYLQKR 153 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l-~~el~~lg~~~~~~~d~~~i~~~ 153 (699)
+.||+|||+|.+|++|||..++. .++|.+||....-.| ..+.||...+.+ ++.-.. -+.++.++.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG----GaWLGGQLFSAMvvRKPAh------LFL~Eigvp-- 143 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG----GAWLGGQLFSAMVVRKPAH------LFLQEIGVP-- 143 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC----cccccchhhhhhhhcChHH------HHHHHhCCC--
Confidence 46999999999999999999865 589999998411100 112222211110 000000 000111110
Q ss_pred hhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEecCCC----CEEEEEEc-------Cc------
Q 048823 154 VLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIRE-AMVTDILLGKND----NVEGVCTF-------FG------ 215 (699)
Q Consensus 154 ~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e~~g----~v~gV~t~-------dG------ 215 (699)
....|..+- .-+...|...+...+...||+.+++ +.|++++..++. ++.||+++ .|
T Consensus 144 --YedegdYVV----VKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMD 217 (328)
T KOG2960|consen 144 --YEDEGDYVV----VKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMD 217 (328)
T ss_pred --cccCCCEEE----EeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCC
Confidence 011111111 1244567777777777789999997 778888765322 56676653 22
Q ss_pred -cEEecCeEEEecCC
Q 048823 216 -MNFYAPSVVLTTGT 229 (699)
Q Consensus 216 -~~i~Ad~VVlAtG~ 229 (699)
..+++..||-+||.
T Consensus 218 PNviea~~vvS~tGH 232 (328)
T KOG2960|consen 218 PNVIEAAVVVSTTGH 232 (328)
T ss_pred CCeeeEEEEEEccCC
Confidence 27889999999885
No 238
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.24 E-value=6e-06 Score=95.20 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc-c---EEecCeEEEecCCCCCCcee
Q 048823 183 VESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG-M---NFYAPSVVLTTGTFMSGKIW 236 (699)
Q Consensus 183 l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG-~---~i~Ad~VVlAtG~~~~~~~~ 236 (699)
+.+.+|++++ ++.|+.|..+ +++++||++.++ . .+.++.||+|+|++...+++
T Consensus 203 a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 203 AMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred hccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 3345789998 6999999987 788999987543 2 35799999999998655554
No 239
>PRK02106 choline dehydrogenase; Validated
Probab=98.23 E-value=1.1e-05 Score=93.55 Aligned_cols=53 Identities=25% Similarity=0.239 Sum_probs=41.4
Q ss_pred HccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc--c--EEecCeEEEecCCCCCCceee
Q 048823 184 ESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG--M--NFYAPSVVLTTGTFMSGKIWV 237 (699)
Q Consensus 184 ~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG--~--~i~Ad~VVlAtG~~~~~~~~~ 237 (699)
.+.+|++++ ++.|+.|..+ +++++||++.+. . .+.++.||+|+|++...+++.
T Consensus 211 ~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl 268 (560)
T PRK02106 211 LKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQ 268 (560)
T ss_pred cCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHh
Confidence 345789998 7999999987 678999987543 2 467999999999997665553
No 240
>PRK07846 mycothione reductase; Reviewed
Probab=98.23 E-value=3.4e-05 Score=87.04 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=66.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-+|+|||||..|+++|..+++.|.+|+|+++. +... .
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~----------~~ll------------------~--------------- 203 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRS----------GRLL------------------R--------------- 203 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----------Cccc------------------c---------------
Confidence 36999999999999999999999999999983 0000 0
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..|+ .+...+.+.+ +. ++.++ ++.|+++..+ ++ ...|.+.+|+++.+|.||+|+|..
T Consensus 204 -----------~~d~-~~~~~l~~l~-~~-~v~i~~~~~v~~i~~~-~~-~v~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 204 -----------HLDD-DISERFTELA-SK-RWDVRLGRNVVGVSQD-GS-GVTLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred -----------ccCH-HHHHHHHHHH-hc-CeEEEeCCEEEEEEEc-CC-EEEEEECCCcEeecCEEEEEECCc
Confidence 0121 1223333333 33 68886 6889998754 33 344667788889999999999964
No 241
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.23 E-value=1.2e-05 Score=88.69 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=49.4
Q ss_pred cCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEecCCCCEEEEEEcCc--cEEecCeEEEecCCC
Q 048823 170 TDKREYAMRMKNIVESTANLCIRE-AMVTDILLGKNDNVEGVCTFFG--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 170 ~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e~~g~v~gV~t~dG--~~i~Ad~VVlAtG~~ 230 (699)
+-...+.+.|.+.+++. |++++. ++|+++..+ ++++.+|.+.++ ..++||.||+|+|+|
T Consensus 260 v~G~RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQL-GGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred CcHHHHHHHHHHHHHHC-CCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCC
Confidence 45668889999999988 667764 799999876 678888887776 489999999999999
No 242
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.21 E-value=1.3e-05 Score=92.01 Aligned_cols=91 Identities=26% Similarity=0.373 Sum_probs=66.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-+|+|||||..|+++|..|+..|.+|+|+++. +...
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~----------~~l~---------------------------------- 387 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFA----------PELK---------------------------------- 387 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEEC----------cccc----------------------------------
Confidence 37999999999999999999999999999973 0000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC---cc--EEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF---GM--NFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d---G~--~i~Ad~VVlAtG~~ 230 (699)
.+ ..+.+.+.+.+|+.++ ++.++++..+ ++++.+|.+.+ |. ++.+|.|++|+|..
T Consensus 388 ------------~~-----~~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 388 ------------AD-----QVLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred ------------cc-----HHHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 00 1123344554689987 6889999754 46777777643 32 68899999999964
No 243
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.19 E-value=7.5e-06 Score=93.52 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=42.5
Q ss_pred ccCCeEEE-eeEEEEEEecCC--CCEEEEEEc---Ccc--EEecCeEEEecCCCCCCceeecc
Q 048823 185 STANLCIR-EAMVTDILLGKN--DNVEGVCTF---FGM--NFYAPSVVLTTGTFMSGKIWVGR 239 (699)
Q Consensus 185 ~~~gv~i~-~~~V~~l~~e~~--g~v~gV~t~---dG~--~i~Ad~VVlAtG~~~~~~~~~g~ 239 (699)
+.++++++ ++.|++|..+++ +++.+|... +|+ +++|+.||+|+|+....++++..
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNS 287 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhC
Confidence 45789998 799999988743 368888654 343 68999999999999877777543
No 244
>PRK13984 putative oxidoreductase; Provisional
Probab=98.18 E-value=5.1e-06 Score=97.28 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=38.3
Q ss_pred cCcccccCCCCCEEEecccCCCchHHHHHHHHHHHHHHHHHHhcC
Q 048823 398 CYRSLMTKKVEGLFFSGQINGTTGYEEAAAQGIISGINAARHSDG 442 (699)
Q Consensus 398 l~~~letk~i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~~~~ 442 (699)
.+.+++|. +||+|+|||+.+......|+++|..||.++.+++.+
T Consensus 560 vd~~~~Ts-~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 560 TNEYGQTS-IPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred eCCCCccC-CCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678884 999999999988766789999999999999999865
No 245
>PRK09897 hypothetical protein; Provisional
Probab=98.17 E-value=2.3e-05 Score=89.55 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLG--AKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~ 109 (699)
.+|+|||||++|+++|..|.+.+ ++|+|+|++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~ 35 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA 35 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC
Confidence 47999999999999999999865 489999985
No 246
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.14 E-value=6.8e-05 Score=84.72 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=65.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.++|||||..|++.|..+++.|.+|+|+++. +... .
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~----------~~ll------------------~--------------- 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRS----------TKLL------------------R--------------- 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc----------Cccc------------------c---------------
Confidence 36999999999999999999999999999973 0000 0
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..|. .+...+.+.+ +. ++.++ ++.|+++..+ ++. ..|.+.+|+++.+|.||+|+|..
T Consensus 207 -----------~~d~-~~~~~l~~~~-~~-gI~i~~~~~V~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 207 -----------HLDE-DISDRFTEIA-KK-KWDIRLGRNVTAVEQD-GDG-VTLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred -----------ccCH-HHHHHHHHHH-hc-CCEEEeCCEEEEEEEc-CCe-EEEEEcCCCEEEcCEEEEeeccC
Confidence 0111 1222333333 33 68887 6889998754 333 44666778889999999999964
No 247
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.13 E-value=4.9e-06 Score=96.57 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=36.9
Q ss_pred ccccCCCCCEEEecccCC-CchHHHHHHHHHHHHHHHHHHhcCCCC
Q 048823 401 SLMTKKVEGLFFSGQING-TTGYEEAAAQGIISGINAARHSDGKSL 445 (699)
Q Consensus 401 ~letk~i~gLf~AGqi~G-~~Gy~eA~a~G~~Ag~naa~~~~~~~~ 445 (699)
+++| .+||+|.+||+.. ..-..+|.++|..||.++++++.|++.
T Consensus 404 ~~~t-s~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g~~~ 448 (564)
T PRK12771 404 FMMT-GRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGGEPY 448 (564)
T ss_pred CccC-CCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5555 5899999999864 556679999999999999999988753
No 248
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.13 E-value=5.6e-05 Score=85.82 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=36.3
Q ss_pred ccccCCCCCEEEecccCCC-chHHHHHHHHHHHHHHHHHHhcCCCC
Q 048823 401 SLMTKKVEGLFFSGQINGT-TGYEEAAAQGIISGINAARHSDGKSL 445 (699)
Q Consensus 401 ~letk~i~gLf~AGqi~G~-~Gy~eA~a~G~~Ag~naa~~~~~~~~ 445 (699)
+++| .+||+|.+||+.+. .-..+|+++|..||.|+.+++.|+.+
T Consensus 425 ~~~T-s~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~~~ 469 (471)
T PRK12810 425 AYQT-SNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMGSTA 469 (471)
T ss_pred cccC-CCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4565 48999999999864 33578999999999999999988654
No 249
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.7e-05 Score=81.23 Aligned_cols=141 Identities=25% Similarity=0.260 Sum_probs=76.1
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee-----cccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhh
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN-----IDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYL 150 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~-----~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i 150 (699)
.+||.||||||.+|+++|-.+|..|.+|.++|-- ...+|.++.....|++.+ .+++...-+|.... +....
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPK-KLMHQAallG~al~---da~ky 93 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPK-KLMHQAALLGEALH---DARKY 93 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccH-HHHHHHHHHHHHHH---HHHhh
Confidence 4699999999999999999999999999999953 112232222233444433 33343332332111 10000
Q ss_pred hHHhhccCCCccccccccccCHHHHHHHHHHHHHccCC---eEEEeeEEEEEEe----cCCCCEEEEEEcCc--cEEecC
Q 048823 151 QKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTAN---LCIREAMVTDILL----GKNDNVEGVCTFFG--MNFYAP 221 (699)
Q Consensus 151 ~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~g---v~i~~~~V~~l~~----e~~g~v~gV~t~dG--~~i~Ad 221 (699)
.+..... .-..|...+.+.+++.+....= +.+.+..|+=+.- -+..++ ..+...| +.+.|+
T Consensus 94 GW~~~e~---------~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I-~at~~~gk~~~~ta~ 163 (503)
T KOG4716|consen 94 GWNVDEQ---------KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKI-KATNKKGKERFLTAE 163 (503)
T ss_pred CCCCccc---------cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceE-EEecCCCceEEeecc
Confidence 0000000 0124677788888888876521 2222333332210 001222 2233344 378899
Q ss_pred eEEEecCCC
Q 048823 222 SVVLTTGTF 230 (699)
Q Consensus 222 ~VVlAtG~~ 230 (699)
.+|+|||..
T Consensus 164 ~fvIatG~R 172 (503)
T KOG4716|consen 164 NFVIATGLR 172 (503)
T ss_pred eEEEEecCC
Confidence 999999974
No 250
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.11 E-value=6.1e-05 Score=82.66 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=49.8
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc-----CccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF-----FGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~-----dG~~i~Ad~VVlAtG~~~ 231 (699)
..+|-..+.+.|.+.+.+.+++++. +++|++|... ++..|.|.+. +..+++|+.|++.+|+.+
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~-~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRN-GDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEEC-CCCCEEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 3567788899999999998899986 8999999987 4444666553 234899999999999873
No 251
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.10 E-value=7.4e-06 Score=88.85 Aligned_cols=144 Identities=21% Similarity=0.206 Sum_probs=72.9
Q ss_pred cccEEEECCChHHHHHHHHHHHcC-CceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCcc-----chhhchhhh
Q 048823 77 RFDVIVVGGGHAGCEAALASARLG-AKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEI-----GKVADMCYL 150 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~-----~~~~d~~~i 150 (699)
.||+|+||.|+++++.|..|...+ .+++.+|+. +.+.|.++-...|....-.+.+.+-.+.... ..+....+-
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~-~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERR-PSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES--SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecC-CCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 489999999999999999999887 899999985 2333332111111110000011000000000 000001111
Q ss_pred hHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCC--CEEEEEEc----CccEEecCeEE
Q 048823 151 QKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKND--NVEGVCTF----FGMNFYAPSVV 224 (699)
Q Consensus 151 ~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g--~v~gV~t~----dG~~i~Ad~VV 224 (699)
-+.+++... ....+..|.++++-.+.+.++...+.++|++|..++++ ..+.|.+. ++..+.|+.||
T Consensus 81 l~~f~~~~~--------~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vV 152 (341)
T PF13434_consen 81 LYEFYNRGY--------FFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVV 152 (341)
T ss_dssp HHHHHHH----------SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEE
T ss_pred hhhhhhcCC--------CCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEE
Confidence 111221111 12467788888888888876545568899999876333 36777773 45689999999
Q ss_pred EecCC
Q 048823 225 LTTGT 229 (699)
Q Consensus 225 lAtG~ 229 (699)
+|+|.
T Consensus 153 la~G~ 157 (341)
T PF13434_consen 153 LATGG 157 (341)
T ss_dssp E----
T ss_pred ECcCC
Confidence 99995
No 252
>PLN02785 Protein HOTHEAD
Probab=98.09 E-value=2.3e-05 Score=90.92 Aligned_cols=35 Identities=43% Similarity=0.650 Sum_probs=32.0
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeec
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNI 110 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~ 110 (699)
...||+||||||.|||.+|..|++ +.+|+|||++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 446999999999999999999999 68999999974
No 253
>PRK07233 hypothetical protein; Provisional
Probab=98.06 E-value=3.3e-05 Score=86.22 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.+.+.|.+.+.+. |+++. +++|++|..+ ++++.++. .+|.++.||.||+|+...
T Consensus 199 ~l~~~l~~~l~~~-g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 199 TLIDALAEAIEAR-GGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHhc-CceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCHH
Confidence 4567777777776 66665 7999999876 56665555 456689999999999864
No 254
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.06 E-value=2.7e-05 Score=81.18 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCcc--EEecCeEEEecCCC
Q 048823 173 REYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGM--NFYAPSVVLTTGTF 230 (699)
Q Consensus 173 ~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~VVlAtG~~ 230 (699)
-++.+.|...+++.+|+..-..+|.+.... +++|..|.+.++. .++|+..|+|+|+|
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASGSF 316 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeecccc
Confidence 356778888888885554446888888876 7899999998875 57899999999998
No 255
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.04 E-value=1.4e-05 Score=87.50 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=67.7
Q ss_pred cEEEECCChHHHHHHHHHHHc---CCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 79 DVIVVGGGHAGCEAALASARL---GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~---G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
.|||||||+||+.+|..+.++ +.+|+|||++.. . +... ....+ ..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~-~------~~~~------~~~~~--~~----------------- 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST-T------PYSG------MLPGM--IA----------------- 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC-C------cccc------hhhHH--Hh-----------------
Confidence 389999999999999999754 689999998411 0 0000 00000 00
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
| ..+...+...+.+.+.+. +++++..+|+.+..+ ++ .|.+.+|+++.+|.+|+|||+..
T Consensus 49 ----g--------~~~~~~~~~~~~~~~~~~-gv~~~~~~v~~id~~--~~--~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 49 ----G--------HYSLDEIRIDLRRLARQA-GARFVIAEATGIDPD--RR--KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred ----e--------eCCHHHhcccHHHHHHhc-CCEEEEEEEEEEecc--cC--EEEECCCCcccccEEEEccCCCC
Confidence 0 112222333344555554 899988899999764 33 47788888899999999999753
No 256
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.03 E-value=0.00023 Score=78.50 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=50.3
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
+.+|+..+...|.+.+.+ |++++ ++.|+++..+ ++ .++|++.+|..+.||.||+|+|.|+
T Consensus 130 g~idp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~-~~-~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI--RLTLHFNTEITSLERD-GE-GWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred cccChHHHHHHHHhccCC--CcEEEeCCEEEEEEEc-CC-eEEEEeCCCCEEEcCEEEEcCCccc
Confidence 467999999999998877 67776 6999999865 34 4678888887799999999999995
No 257
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.02 E-value=2.4e-05 Score=88.00 Aligned_cols=31 Identities=29% Similarity=0.480 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLG--AKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~ 109 (699)
+|||||||+||+++|..|++.| .+|+|||++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~ 34 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKT 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECC
Confidence 5999999999999999999986 589999984
No 258
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.02 E-value=0.00021 Score=78.15 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=36.4
Q ss_pred cccccCCCCCEEEecccCCCch------HHHHHHHHHHHHHHHHHHhcCCCC
Q 048823 400 RSLMTKKVEGLFFSGQINGTTG------YEEAAAQGIISGINAARHSDGKSL 445 (699)
Q Consensus 400 ~~letk~i~gLf~AGqi~G~~G------y~eA~a~G~~Ag~naa~~~~~~~~ 445 (699)
++++++++||+|++||+....+ -..|..||.+||.|.++.+.|+++
T Consensus 264 ~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~ 315 (364)
T TIGR03169 264 PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPL 315 (364)
T ss_pred CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCC
Confidence 4566656899999999986421 246889999999999999988753
No 259
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.01 E-value=8.6e-06 Score=97.68 Aligned_cols=133 Identities=16% Similarity=0.051 Sum_probs=73.9
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhh---HH
Q 048823 79 DVIVVGGGHAGCEAALASARL--GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQ---KR 153 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~---~~ 153 (699)
+|+|||||++|+++|+.|++. |++|+|+|++... ...++ |........+.++.++............. ..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~-~~~G~----Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 76 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY-DTFGW----GVVFSDATLGNLRAADPVSAAAIGDAFNHWDDID 76 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC-cccCc----ceEccHHHHHHHHhcCHHHHHHHHHhcccCCceE
Confidence 699999999999999999998 8999999996211 10011 10111122233332221100000000000 00
Q ss_pred hhccCCCccc--c-ccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCC
Q 048823 154 VLNTSRGPAV--W-ALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGT 229 (699)
Q Consensus 154 ~~~~s~g~~~--~-~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~ 229 (699)
+.. .+... . ..-..+++..+.+.|.+.+.+. |+++. +++|+++... .+.+|.||.|+|.
T Consensus 77 ~~~--~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~-GV~i~~g~~v~~i~~~--------------~~~~D~VVgADG~ 139 (765)
T PRK08255 77 VHF--KGRRIRSGGHGFAGIGRKRLLNILQARCEEL-GVKLVFETEVPDDQAL--------------AADADLVIASDGL 139 (765)
T ss_pred EEE--CCEEEEECCeeEecCCHHHHHHHHHHHHHHc-CCEEEeCCccCchhhh--------------hcCCCEEEEcCCC
Confidence 000 01000 0 0011467889999999999887 78875 6777655310 2478999999998
Q ss_pred CCCC
Q 048823 230 FMSG 233 (699)
Q Consensus 230 ~~~~ 233 (699)
++..
T Consensus 140 ~S~v 143 (765)
T PRK08255 140 NSRI 143 (765)
T ss_pred CHHH
Confidence 7643
No 260
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.00 E-value=0.0004 Score=74.66 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=53.0
Q ss_pred cccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 168 AQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 168 ~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
..+++..+...+.+.+.+. |++++ +++|+++..+ ++++++|.+.+| ++.||.||+|+|.|+
T Consensus 132 g~v~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKL-GVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred ceEChHHHHHHHHHHHHHc-CCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 4678999999999999887 78887 5899999875 677888998888 799999999999995
No 261
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.95 E-value=5.2e-06 Score=85.87 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=29.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHc-CC-ceeEEeee
Q 048823 75 DERFDVIVVGGGHAGCEAALASARL-GA-KTLLLTLN 109 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~-G~-kV~LlE~~ 109 (699)
..+|.|+|||||.+|+.+|..+.+. |. +|.+||..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 3579999999999999999998874 43 79999974
No 262
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=9.5e-05 Score=81.46 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=80.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcC---CceeEEeeecccccCCCCCCCCCCCccchh--hHHHHhhcCccchh-hchhhhh
Q 048823 78 FDVIVVGGGHAGCEAALASARLG---AKTLLLTLNIDKIAWQPCNPAVGGPAKSQL--VHEVDALGGEIGKV-ADMCYLQ 151 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G---~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l--~~el~~lg~~~~~~-~d~~~i~ 151 (699)
++|+|||||++|+++|.+|.+.- ..+.|+|+...- | | |++.+.- .+-+......|... .|....-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~-G---~-----GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F 72 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF-G---Q-----GIAYSTEEPEHLLNVPAARMSAFAPDIPQDF 72 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc-C---C-----CccCCCCCchhhhccccccccccCCCCchHH
Confidence 68999999999999999998852 239999985221 1 1 1111100 00111111122222 2222223
Q ss_pred HHhhccC----CCcc-c-cccccccCHHHHHHHHHHHHH----ccC--CeEEEeeEEEEEEecCCCCEEEEEEcCccEEe
Q 048823 152 KRVLNTS----RGPA-V-WALRAQTDKREYAMRMKNIVE----STA--NLCIREAMVTDILLGKNDNVEGVCTFFGMNFY 219 (699)
Q Consensus 152 ~~~~~~s----~g~~-~-~~~r~~~d~~~~~~~L~~~l~----~~~--gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~ 219 (699)
.+|+... ..+. . +.......+..|-.+|.+.+. ..+ .+.+++++++++..++++...-+.+.+|....
T Consensus 73 ~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ 152 (474)
T COG4529 73 VRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEI 152 (474)
T ss_pred HHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeee
Confidence 4444332 1110 0 000011234455555554432 222 25666888888887656777888899999999
Q ss_pred cCeEEEecCCC
Q 048823 220 APSVVLTTGTF 230 (699)
Q Consensus 220 Ad~VVlAtG~~ 230 (699)
||.+|+|||.-
T Consensus 153 ad~~Vlatgh~ 163 (474)
T COG4529 153 ADIIVLATGHS 163 (474)
T ss_pred eeEEEEeccCC
Confidence 99999999963
No 263
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.92 E-value=0.00013 Score=82.38 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc-----EEecCeEEEecCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM-----NFYAPSVVLTTGTF 230 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~-----~i~Ad~VVlAtG~~ 230 (699)
.+.+.+.+.+++. |+++. ++.|++|..++++++++|++.+|+ ++.||.||+|+...
T Consensus 214 ~l~~~l~~~l~~~-g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 214 RLCQPIVDYITSR-GGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHhc-CCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 3456666667665 66775 899999976546678899987765 79999999999864
No 264
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.90 E-value=0.00021 Score=77.94 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=33.7
Q ss_pred cccccCCCCCEEEecccCC-CchHHHHHHHHHHHHHHHHHHhcC
Q 048823 400 RSLMTKKVEGLFFSGQING-TTGYEEAAAQGIISGINAARHSDG 442 (699)
Q Consensus 400 ~~letk~i~gLf~AGqi~G-~~Gy~eA~a~G~~Ag~naa~~~~~ 442 (699)
..+++ ..||+|++||+.+ ..-...|..+|..||.|++.++..
T Consensus 309 ~~~~t-~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 309 EKHMT-SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred CCccc-CCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHhc
Confidence 34555 4799999999886 455578999999999999988754
No 265
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.89 E-value=0.00015 Score=81.37 Aligned_cols=94 Identities=26% Similarity=0.322 Sum_probs=72.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.++|||||+.|++.|..+++.|.+|+|||+. +.+ +
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~----------~~i------------------L----------------- 209 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERG----------DRI------------------L----------------- 209 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecC----------CCC------------------C-----------------
Confidence 3999999999999999999999999999983 000 0
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc--EEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM--NFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~VVlAtG~~ 230 (699)
| ..|+ .+.+.+.+.+++ .++.++ ++.|+.+... ++. ..|.+.+|. ++++|.|++|+|.-
T Consensus 210 --p-------~~D~-ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~-~~~-v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 210 --P-------GEDP-EISKELTKQLEK-GGVKILLNTKVTAVEKK-DDG-VLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred --C-------cCCH-HHHHHHHHHHHh-CCeEEEccceEEEEEec-CCe-EEEEEecCCCCEEEeeEEEEccCCc
Confidence 0 1233 467777888888 589887 5888888754 333 667777776 78899999999964
No 266
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.88 E-value=8.6e-05 Score=82.38 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=70.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-+|+|||||..|+++|..|++.|.+|+|+|+. +... .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~----------~~~l------------------~--------------- 181 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELA----------ATVM------------------G--------------- 181 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----------Ccch------------------h---------------
Confidence 36999999999999999999999999999973 0000 0
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
......+...+.+.+++. |++++ ++.|+++.. +....|.+.+|+++.||.||+|+|..
T Consensus 182 -----------~~~~~~~~~~l~~~l~~~-GV~i~~~~~V~~i~~---~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 182 -----------RNAPPPVQRYLLQRHQQA-GVRILLNNAIEHVVD---GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred -----------hhcCHHHHHHHHHHHHHC-CCEEEeCCeeEEEEc---CCEEEEEECCCCEEECCEEEECCCCC
Confidence 000113344556666665 89987 688988863 33345778889899999999999975
No 267
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.86 E-value=7.8e-05 Score=83.87 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARL--GAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~ 109 (699)
+|||||||+||+.||..|++. +++|+|+|++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC
Confidence 599999999999999999987 5789999984
No 268
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.85 E-value=0.00011 Score=81.06 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=71.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-+|+|||||..|+++|..|++.|.+|+|+++. +... ..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~----------~~~l------------------~~-------------- 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA----------ASLL------------------AS-------------- 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecC----------Cccc------------------ch--------------
Confidence 36999999999999999999999999999973 0000 00
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..+ ......+.+.+++. |++++ ++.|+++..+ +..+.|.+.+|.++.+|.||+|+|..
T Consensus 180 -----------~~~-~~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~--~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 180 -----------LMP-PEVSSRLQHRLTEM-GVHLLLKSQLQGLEKT--DSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred -----------hCC-HHHHHHHHHHHHhC-CCEEEECCeEEEEEcc--CCEEEEEEcCCcEEECCEEEECcCCC
Confidence 011 12334556667665 88887 6899998754 33456788899999999999999975
No 269
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.84 E-value=2e-05 Score=64.66 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=26.2
Q ss_pred EECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 82 VVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 82 VIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
|||||++|+++|+.|++.|.+|+|+|++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 8999999999999999999999999995
No 270
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.84 E-value=7.9e-05 Score=84.62 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=50.8
Q ss_pred HHHHHHHHc-cCCeEEE-eeEEEEEEecCC-CCEEEEEEc-C-ccEEecCe---EEEecCCCCCCceeecccccCCCCcc
Q 048823 177 MRMKNIVES-TANLCIR-EAMVTDILLGKN-DNVEGVCTF-F-GMNFYAPS---VVLTTGTFMSGKIWVGRTSMPAGRAG 248 (699)
Q Consensus 177 ~~L~~~l~~-~~gv~i~-~~~V~~l~~e~~-g~v~gV~t~-d-G~~i~Ad~---VVlAtG~~~~~~~~~g~~~~~~gr~g 248 (699)
.++.+.+.. .+|+.+. .+.|+.+..|+. .+..+|... + |.+.+.+. ||+++|+....+++.
T Consensus 256 ~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLM----------- 324 (623)
T KOG1238|consen 256 KAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLM----------- 324 (623)
T ss_pred hhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHH-----------
Confidence 344444444 4688876 588888887743 356777754 4 45555555 999999986554442
Q ss_pred cccchhHHHHHHHcCCcc
Q 048823 249 ESASHGLTENLQRLGFET 266 (699)
Q Consensus 249 ~~~s~~L~~~L~~~G~~~ 266 (699)
.+..+-++.|+++|+++
T Consensus 325 -LSGIGP~~~L~~~gIpv 341 (623)
T KOG1238|consen 325 -LSGIGPADHLKKLGIPV 341 (623)
T ss_pred -HcCCCcHHHHHhcCCCe
Confidence 23456667788998874
No 271
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.82 E-value=8.5e-05 Score=82.41 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=64.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC--ceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA--KTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~--kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
.+|||||||+||++||..|++.|. +|+|+++.... ....| .+.+.+ +.+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~-~y~r~----------~l~~~~--~~~~~-------------- 56 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL-PYERP----------PLSKSM--LLEDS-------------- 56 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC-CCCCC----------CCCHHH--HCCCC--------------
Confidence 469999999999999999999986 79999974110 00000 000000 00000
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
..+.. .... +.+.+ .+++++ .+.|+.+..+ .+ .|.+.+|.++.+|.+|+|||+..
T Consensus 57 ---~~~~~-----~~~~--------~~~~~-~~i~~~~g~~V~~id~~--~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 57 ---PQLQQ-----VLPA--------NWWQE-NNVHLHSGVTIKTLGRD--TR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred ---ccccc-----cCCH--------HHHHH-CCCEEEcCCEEEEEECC--CC--EEEECCCCEEEcCEEEEccCCCC
Confidence 00000 0011 11223 389987 5789888754 22 36677888899999999999863
No 272
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=0.00017 Score=81.99 Aligned_cols=97 Identities=23% Similarity=0.305 Sum_probs=69.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||.+|+++|..|++.|.+|+|+|+. +.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~----------~~il---------------------------------- 216 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAA----------DRIL---------------------------------- 216 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEec----------CccC----------------------------------
Confidence 36999999999999999999999999999983 0000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc--EEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM--NFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~VVlAtG~~ 230 (699)
+ ..+. .+...+.+.+++. |++++ ++.|+++..++++++..+.+.+|. ++.+|.||+|+|..
T Consensus 217 ---~-------~~~~-~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 217 ---P-------TEDA-ELSKEVARLLKKL-GVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred ---C-------cCCH-HHHHHHHHHHHhc-CCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 0 0111 2445556667675 89987 688999874113455555566663 69999999999974
No 273
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.76 E-value=0.00019 Score=81.18 Aligned_cols=95 Identities=22% Similarity=0.281 Sum_probs=69.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-+|+|||||.+|+++|..+++.|.+|+|+|+. +...
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~----------~~~l---------------------------------- 206 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEML----------DRIL---------------------------------- 206 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC----------CCCC----------------------------------
Confidence 46999999999999999999999999999983 1000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc--cEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG--~~i~Ad~VVlAtG~~ 230 (699)
+ ..+. .+...+.+.+++. |++++ ++.|+++..+ ++.+. +.+.+| .++.+|.||+|+|..
T Consensus 207 ---~-------~~~~-~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 207 ---P-------GEDA-EVSKVVAKALKKK-GVKILTNTKVTAVEKN-DDQVV-YENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred ---C-------CCCH-HHHHHHHHHHHHc-CCEEEeCCEEEEEEEe-CCEEE-EEEeCCcEEEEEeCEEEEecCCc
Confidence 0 0111 2334456667775 89887 6899998764 34443 555666 479999999999974
No 274
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.75 E-value=0.00019 Score=86.76 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=73.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.++|||||..|+++|..|++.|.+|+|+|+. +.+ +..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~----------~~l------------------l~~--------------- 183 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFA----------PML------------------MAE--------------- 183 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecc----------ccc------------------hhh---------------
Confidence 5899999999999999999999999999973 100 000
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
+.|. .....+.+.+++. ||+++ +..++++..+.++....|.+.+|+++.+|.||+|+|...
T Consensus 184 ----------~ld~-~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 184 ----------QLDQ-MGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred ----------hcCH-HHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 1122 2345566777776 89987 688988864322456678888999999999999999653
No 275
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.74 E-value=0.00022 Score=76.57 Aligned_cols=178 Identities=20% Similarity=0.180 Sum_probs=95.8
Q ss_pred CCcccEEEECCChHHHHHHHHHHHc----CCceeEEeee-cccccC-CC---CCCCCC--CCccchhhHHHHhhcCccc-
Q 048823 75 DERFDVIVVGGGHAGCEAALASARL----GAKTLLLTLN-IDKIAW-QP---CNPAVG--GPAKSQLVHEVDALGGEIG- 142 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~----G~kV~LlE~~-~~~~g~-~~---c~~s~G--g~~~~~l~~el~~lg~~~~- 142 (699)
...|||+|||||++|.+.|.++... -.||+|+|.+ ..+.+. .. .+.-+- .+...++.+.+.++...+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~ 113 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHD 113 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence 3479999999999999999988864 3689999985 111110 00 000000 0111122222211111100
Q ss_pred --------hhhc---hhhhhHHhhccCCCccccccccccCHHHHHHHHH--HHHHccCCeEEEe-eEEEEEEe------c
Q 048823 143 --------KVAD---MCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMK--NIVESTANLCIRE-AMVTDILL------G 202 (699)
Q Consensus 143 --------~~~d---~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~--~~l~~~~gv~i~~-~~V~~l~~------e 202 (699)
...| ...+++.--+..... ...++...+...|. ......+++++.+ +.+.++.. .
T Consensus 114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~-----a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~ 188 (481)
T KOG3855|consen 114 RYQKFSRMLVWDSCSAALILFDHDNVGIDM-----AFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKN 188 (481)
T ss_pred ccccccceeeecccchhhhhhccccccccc-----eeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCC
Confidence 0111 111222111111000 11234455555665 4445557899885 77766643 3
Q ss_pred CCCCEEEEEEcCccEEecCeEEEecCCCCCCceeecc--cccCCCCcccccchhHHH
Q 048823 203 KNDNVEGVCTFFGMNFYAPSVVLTTGTFMSGKIWVGR--TSMPAGRAGESASHGLTE 257 (699)
Q Consensus 203 ~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~~~~~~g~--~~~~~gr~g~~~s~~L~~ 257 (699)
+++-...+.+.||..|.+|.+|.|+|.-+.++-+.+. ..+...+.|..+...+..
T Consensus 189 ~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~ 245 (481)
T KOG3855|consen 189 DNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEE 245 (481)
T ss_pred CCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecc
Confidence 4667888999999999999999999988766655433 233345555555544443
No 276
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00021 Score=82.37 Aligned_cols=57 Identities=32% Similarity=0.310 Sum_probs=43.1
Q ss_pred HHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC--c---c-EEecCeEEEecCCCCCCceee
Q 048823 180 KNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF--G---M-NFYAPSVVLTTGTFMSGKIWV 237 (699)
Q Consensus 180 ~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d--G---~-~i~Ad~VVlAtG~~~~~~~~~ 237 (699)
...+.+.+|+++. ++.|+.|+.+ .+++++|.+.. + + .+.++.||+|+|++...+++.
T Consensus 209 l~~a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~ 272 (542)
T COG2303 209 LKPALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLL 272 (542)
T ss_pred chhHhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHH
Confidence 3335566899998 5999999998 78888887642 3 2 356899999999997666654
No 277
>PRK06116 glutathione reductase; Validated
Probab=97.72 E-value=0.00027 Score=79.77 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=70.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||..|++.|..+++.|.+|++++++ +... .
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~----------~~~l------------------~--------------- 204 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG----------DAPL------------------R--------------- 204 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----------CCCc------------------c---------------
Confidence 36999999999999999999999999999973 0000 0
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..++ .+...+.+.+++. |++++ ++.|+++..+ ++....|.+.+|.++.+|.||+|+|..
T Consensus 205 -----------~~~~-~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~-~~g~~~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 205 -----------GFDP-DIRETLVEEMEKK-GIRLHTNAVPKAVEKN-ADGSLTLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred -----------ccCH-HHHHHHHHHHHHC-CcEEECCCEEEEEEEc-CCceEEEEEcCCcEEEeCEEEEeeCCC
Confidence 0111 2344555666665 89987 6899999764 233245777788889999999999964
No 278
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.71 E-value=0.00028 Score=79.75 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=70.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|++.|..+++.|.+|+|+++. +.+. .
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~----------~~il------------------~---------------- 203 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRH----------ERVL------------------R---------------- 203 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecC----------CCCC------------------c----------------
Confidence 6999999999999999999999999999983 0000 0
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc-cEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG-MNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG-~~i~Ad~VVlAtG~~ 230 (699)
..|. .+...+.+.+++. |+.++ ++.|+++..+ ++....|.+.+| ..+.+|.||+|+|..
T Consensus 204 ----------~~d~-~~~~~~~~~l~~~-gI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 204 ----------SFDS-MISETITEEYEKE-GINVHKLSKPVKVEKT-VEGKLVIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred ----------ccCH-HHHHHHHHHHHHc-CCEEEcCCEEEEEEEe-CCceEEEEECCCcEEEEcCEEEEeeCCC
Confidence 1122 2445566667765 89987 6889998754 233345667777 579999999999964
No 279
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.70 E-value=0.0002 Score=86.20 Aligned_cols=95 Identities=23% Similarity=0.322 Sum_probs=71.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|+++|..|++.|.+|+|+|+. +.. +..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~----------~~l------------------l~~--------------- 178 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHA----------PGL------------------MAK--------------- 178 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccC----------Cch------------------hhh---------------
Confidence 5999999999999999999999999999972 000 000
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+.|. .....+.+.+++. ||.++ ++.++++.. ++++.+|.+.||+++.+|.||+|+|..
T Consensus 179 ----------~ld~-~~~~~l~~~l~~~-GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 179 ----------QLDQ-TAGRLLQRELEQK-GLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred ----------hcCH-HHHHHHHHHHHHc-CCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCC
Confidence 1121 2334456667676 89987 578888863 456788999999999999999999964
No 280
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.70 E-value=0.0019 Score=73.74 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=36.3
Q ss_pred ccccCCCCCEEEecccCCC-chHHHHHHHHHHHHHHHHHHhcCCCC
Q 048823 401 SLMTKKVEGLFFSGQINGT-TGYEEAAAQGIISGINAARHSDGKSL 445 (699)
Q Consensus 401 ~letk~i~gLf~AGqi~G~-~Gy~eA~a~G~~Ag~naa~~~~~~~~ 445 (699)
+++| .+||+|+|||+.+. ....+|+++|..||.++.+++.|..+
T Consensus 439 ~~~T-s~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~~~ 483 (485)
T TIGR01317 439 DYST-SIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMGSSV 483 (485)
T ss_pred CceE-CCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566 48999999998653 45578999999999999999988654
No 281
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.68 E-value=0.00059 Score=77.44 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=31.7
Q ss_pred ccccCCCCCEEEecccCCCc-hHHHHHHHHHHHHHHHHHHh
Q 048823 401 SLMTKKVEGLFFSGQINGTT-GYEEAAAQGIISGINAARHS 440 (699)
Q Consensus 401 ~letk~i~gLf~AGqi~G~~-Gy~eA~a~G~~Ag~naa~~~ 440 (699)
+++| .+||+|.+||+.+.. -..+|.++|..||.|+.+++
T Consensus 426 ~~~T-~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 426 PYQT-TNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CccC-CCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 4555 489999999987653 34689999999999998875
No 282
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.67 E-value=0.00033 Score=79.32 Aligned_cols=94 Identities=26% Similarity=0.321 Sum_probs=68.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|+++|..+++.|.+|+|+++. +...
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~----------~~~l----------------------------------- 208 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEAL----------PRIL----------------------------------- 208 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----------CCcC-----------------------------------
Confidence 6999999999999999999999999999983 1000
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc---cEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG---MNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG---~~i~Ad~VVlAtG~~ 230 (699)
+ ..+ ..+...+.+.+++. |+.++ ++.|+++..+ ++ .+.+.+.+| +++.+|.||+|+|..
T Consensus 209 --~-------~~~-~~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~-~~-~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 209 --P-------GED-KEISKLAERALKKR-GIKIKTGAKAKKVEQT-DD-GVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred --C-------cCC-HHHHHHHHHHHHHc-CCEEEeCCEEEEEEEe-CC-EEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 0 011 13444556667665 89987 6899999754 33 344555555 579999999999964
No 283
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.65 E-value=0.00016 Score=81.94 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHH--cCCceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASAR--LGAKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr--~G~kV~LlE~~ 109 (699)
..+|+|||||+||++||..|++ .|++|+|+|+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~ 60 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERL 60 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 3579999999999999999997 79999999984
No 284
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.64 E-value=0.00041 Score=78.51 Aligned_cols=95 Identities=24% Similarity=0.287 Sum_probs=70.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||..|++.|..+++.|.+|+|+++. +.+.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~----------~~~l---------------------------------- 211 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTR----------DRLL---------------------------------- 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----------CCcC----------------------------------
Confidence 36999999999999999999999999999983 1000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+ ..|. .+...+.+.+++. |+.++ ++.|+++..+ ++. +.+.+.+|.++.+|.||+|+|..
T Consensus 212 ---~-------~~d~-~~~~~l~~~l~~~-gI~v~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 212 ---S-------FLDD-EISDALSYHLRDS-GVTIRHNEEVEKVEGG-DDG-VIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred ---C-------cCCH-HHHHHHHHHHHHc-CCEEEECCEEEEEEEe-CCe-EEEEECCCCEEEeCEEEEeecCC
Confidence 0 0121 2445566667665 89887 6899998754 333 44667778889999999999975
No 285
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.63 E-value=8.7e-05 Score=83.74 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4579999999999999999999999999999984
No 286
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.61 E-value=0.00019 Score=78.36 Aligned_cols=32 Identities=31% Similarity=0.281 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 57999999999999999999999999999984
No 287
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.60 E-value=0.00016 Score=86.52 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=31.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
....|+|||||+||++||+.|++.|++|+|+|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 346799999999999999999999999999997
No 288
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.59 E-value=0.00047 Score=77.55 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=66.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||.+|+++|..+++.|.+|+|+|+. +... .
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~----------~~~l------------------~---------------- 194 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAA----------STIL------------------P---------------- 194 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecC----------CccC------------------C----------------
Confidence 6999999999999999999999999999983 0000 0
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..++ .+...+.+.+++. |++++ ++.|+++..+ ++.+ .+ +.+|.++.+|.||+|+|..
T Consensus 195 ----------~~~~-~~~~~~~~~l~~~-GI~i~~~~~V~~i~~~-~~~v-~v-~~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 195 ----------REEP-SVAALAKQYMEED-GITFLLNAHTTEVKND-GDQV-LV-VTEDETYRFDALLYATGRK 252 (438)
T ss_pred ----------CCCH-HHHHHHHHHHHHc-CCEEEcCCEEEEEEec-CCEE-EE-EECCeEEEcCEEEEeeCCC
Confidence 0011 2334455666665 89987 6889998754 3332 23 3456689999999999974
No 289
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.59 E-value=0.00029 Score=77.59 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=63.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 78 FDVIVVGGGHAGCEAALASARLG--AKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
.||||||||+||+.+|..+.+.+ .+|+||++.... +... +. +...+ .+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~-------~y~~-~~---l~~~~---~~---------------- 52 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD-------EYNK-PD---LSHVF---SQ---------------- 52 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC-------CcCc-Cc---CcHHH---hC----------------
Confidence 47999999999999999998864 579999974110 0000 00 00000 00
Q ss_pred ccCCCccccccccccCHHHHHH-HHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAM-RMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~-~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
......+.. ...+.+++. +++++ +++|+.+..+ .+ .|.+ +|..+.+|.+|+|||+.
T Consensus 53 -------------~~~~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~--~~--~v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 53 -------------GQRADDLTRQSAGEFAEQF-NLRLFPHTWVTDIDAE--AQ--VVKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred -------------CCCHHHhhcCCHHHHHHhC-CCEEECCCEEEEEECC--CC--EEEE-CCeEEeCCEEEECCCCC
Confidence 011112221 123334444 88887 6899998764 33 2333 56689999999999985
No 290
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.58 E-value=0.0005 Score=77.04 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=68.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||.+|+++|..|++.|.+|+++++. +... .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~----------~~~~------------------~--------------- 174 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRS----------ERIL------------------N--------------- 174 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC----------cccC------------------c---------------
Confidence 36999999999999999999999999999973 0000 0
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+ ..+ ..+...+.+.+++. |++++ ++.|+++.. ++.+ +.+.+|.++.+|.||+|+|..
T Consensus 175 ---~-------~~~-~~~~~~~~~~l~~~-gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 175 ---K-------LFD-EEMNQIVEEELKKH-EINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred ---c-------ccC-HHHHHHHHHHHHHc-CCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCcc
Confidence 0 011 12344556666665 89987 688999864 3433 566778899999999999975
No 291
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.57 E-value=0.00051 Score=75.40 Aligned_cols=100 Identities=19% Similarity=0.114 Sum_probs=77.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
--|+|||||..|+++|..|...+++|++|++. +.| +.+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e------~~~-----------~~~------------------------- 251 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPE------PWL-----------LPR------------------------- 251 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccC------ccc-----------hhh-------------------------
Confidence 34999999999999999999999999999973 000 000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMS 232 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~ 232 (699)
.-...+.+.+...+++. +|+++ .+.+.++....+|++..|.+.||.++.||.||+.+|...+
T Consensus 252 ------------lf~~~i~~~~~~y~e~k-gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 252 ------------LFGPSIGQFYEDYYENK-GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred ------------hhhHHHHHHHHHHHHhc-CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 00013445566667775 89987 6888999876678999999999999999999999998643
No 292
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.55 E-value=0.00064 Score=77.43 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=69.2
Q ss_pred cEEEECCChHHHHHHHHHHHc---CCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhh
Q 048823 79 DVIVVGGGHAGCEAALASARL---GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVL 155 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~---G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~ 155 (699)
.|+|||||..|++.|..++.. |.+|+|+|+. +.+.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~----------~~il-------------------------------- 226 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN----------NMIL-------------------------------- 226 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC----------Cccc--------------------------------
Confidence 599999999999999876654 9999999973 0000
Q ss_pred ccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 156 NTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 156 ~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+ ..|+ .+...+.+.+++. |+.++ ++.|+++..+ ++....|.+.+|.++.+|.||+|+|..
T Consensus 227 -----~-------~~d~-~~~~~l~~~L~~~-GI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 227 -----R-------GFDS-TLRKELTKQLRAN-GINIMTNENPAKVTLN-ADGSKHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred -----c-------ccCH-HHHHHHHHHHHHc-CCEEEcCCEEEEEEEc-CCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence 0 1121 3455666777775 89987 6889998754 334455667778889999999999964
No 293
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.54 E-value=0.0006 Score=77.24 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=67.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-+|+|||||..|+++|..+++.|.+|+|+++. +...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~----------~~~l---------------------------------- 202 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRS----------DRLL---------------------------------- 202 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC----------CcCC----------------------------------
Confidence 46999999999999999999999999999983 0000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---CccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---FGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG~~i~Ad~VVlAtG~~ 230 (699)
+ ..|+ .+...+.+.+++. |++++ ++.|+++..+ +....+.+. ++.++.+|.||+|+|..
T Consensus 203 ---~-------~~d~-~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~--~~~~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 203 ---P-------REEP-EISAAVEEALAEE-GIEVVTSAQVKAVSVR--GGGKIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred ---C-------ccCH-HHHHHHHHHHHHc-CCEEEcCcEEEEEEEc--CCEEEEEEEeCCCceEEEeCEEEEeECCC
Confidence 0 0111 2334556666665 89987 6889998754 233444443 23579999999999964
No 294
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.54 E-value=0.00063 Score=77.17 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=67.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|+++|..+++.|.+|+|+|+. +.. +
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~----------~~~------------------l----------------- 208 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL----------DRA------------------L----------------- 208 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecC----------CCc------------------C-----------------
Confidence 6999999999999999999999999999973 000 0
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc--Cc--cEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF--FG--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~--dG--~~i~Ad~VVlAtG~~ 230 (699)
+ ..|+ .+...+.+.+++. |++++ ++.|+++..+ +....+.+. +| .++.+|.||+|+|..
T Consensus 209 --~-------~~d~-~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~--~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 209 --P-------NEDA-EVSKEIAKQYKKL-GVKILTGTKVESIDDN--GSKVTVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred --C-------ccCH-HHHHHHHHHHHHC-CCEEEECCEEEEEEEe--CCeEEEEEEecCCCeEEEEeCEEEECcCcc
Confidence 0 0121 2445566677776 89987 6899999753 333334443 56 379999999999964
No 295
>PRK07208 hypothetical protein; Provisional
Probab=97.54 E-value=9.5e-05 Score=84.04 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=32.5
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
++..||+|||||++|++||+.|+++|++|+|+|+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~ 36 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEAD 36 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 34579999999999999999999999999999986
No 296
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.53 E-value=0.00064 Score=77.16 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=69.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|++.|..|++.|.+|+|+++. +.+. .
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~----------~~~l------------------~---------------- 214 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSR----------DRVL------------------P---------------- 214 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----------CcCC------------------C----------------
Confidence 6999999999999999999999999999973 0000 0
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..++ .+...+.+.+++. |+.++ ++.|+++..+ ++. ..|.+.+|+++.+|.||+|+|..
T Consensus 215 ----------~~d~-~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~-~~~-~~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 215 ----------GEDA-DAAEVLEEVFARR-GMTVLKRSRAESVERT-GDG-VVVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred ----------CCCH-HHHHHHHHHHHHC-CcEEEcCCEEEEEEEe-CCE-EEEEECCCcEEEecEEEEeecCC
Confidence 0111 2344566667775 89988 6889998754 333 34666788899999999999964
No 297
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.53 E-value=0.00019 Score=81.61 Aligned_cols=34 Identities=38% Similarity=0.382 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
...+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecC
Confidence 3479999999999999999999999999999984
No 298
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.52 E-value=0.0011 Score=78.31 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=34.4
Q ss_pred ccccCCCCCEEEecccCCC-chHHHHHHHHHHHHHHHHHHhcCC
Q 048823 401 SLMTKKVEGLFFSGQINGT-TGYEEAAAQGIISGINAARHSDGK 443 (699)
Q Consensus 401 ~letk~i~gLf~AGqi~G~-~Gy~eA~a~G~~Ag~naa~~~~~~ 443 (699)
+++| ++||+|.+||+.+. .-..+|+++|..||.++..++.++
T Consensus 595 ~~~T-s~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 595 PTQT-HLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred Cccc-CCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4666 48999999997754 445799999999999999988654
No 299
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.52 E-value=0.00075 Score=76.13 Aligned_cols=94 Identities=21% Similarity=0.280 Sum_probs=68.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|+++|..+++.|.+|+|+++. +.. +.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~----------~~~------------------l~---------------- 203 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRG----------ELI------------------LR---------------- 203 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeC----------CCC------------------Cc----------------
Confidence 5999999999999999999999999999973 000 00
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..+. .+...+.+.+++. |+.++ ++.|+++..+ ++. ..|.+.+|+++.+|.||+|+|..
T Consensus 204 ----------~~d~-~~~~~l~~~l~~~-gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 204 ----------GFDD-DMRALLARNMEGR-GIRIHPQTSLTSITKT-DDG-LKVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred ----------ccCH-HHHHHHHHHHHHC-CCEEEeCCEEEEEEEc-CCe-EEEEEcCCcEeecCEEEEeeCCC
Confidence 0111 2334455666665 89987 6889999754 222 44666778889999999999964
No 300
>PRK06370 mercuric reductase; Validated
Probab=97.52 E-value=0.00065 Score=76.98 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=66.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-+|+|||||..|+++|..+++.|.+|+|+++. +...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~----------~~~l---------------------------------- 207 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG----------PRLL---------------------------------- 207 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----------CCCC----------------------------------
Confidence 36999999999999999999999999999983 1000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEE--c-CccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCT--F-FGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t--~-dG~~i~Ad~VVlAtG~~ 230 (699)
+ ..+. .+...+.+.+++. |++++ ++.|+++..+ ++. ..|.+ . ++.++.+|.||+|+|..
T Consensus 208 ---~-------~~~~-~~~~~l~~~l~~~-GV~i~~~~~V~~i~~~-~~~-~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 208 ---P-------REDE-DVAAAVREILERE-GIDVRLNAECIRVERD-GDG-IAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred ---c-------ccCH-HHHHHHHHHHHhC-CCEEEeCCEEEEEEEc-CCE-EEEEEEeCCCceEEEeCEEEECcCCC
Confidence 0 0011 2334455666665 89987 6899999754 222 23332 2 34579999999999964
No 301
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.51 E-value=0.00067 Score=76.20 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=30.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..|.||||||||+++|..|++.|+.|+++|+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~ 155 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERV 155 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCc
Confidence 57999999999999999999999999999983
No 302
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.51 E-value=0.001 Score=73.99 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 174 EYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.+.+.+.+.+.=.+|+.+++..|.++..++++++.+|.. +|++++|+.||. +..+
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~-dpsy 287 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG-DPSY 287 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE-EGGG
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE-CCcc
Confidence 667888887777777777899999998866788999876 788999999994 4444
No 303
>PLN02507 glutathione reductase
Probab=97.50 E-value=0.00083 Score=76.85 Aligned_cols=94 Identities=22% Similarity=0.242 Sum_probs=69.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
+|+|||||..|++.|..+++.|.+|+|+++. +.. +.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~----------~~~------------------l~---------------- 240 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRK----------ELP------------------LR---------------- 240 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEec----------CCc------------------Cc----------------
Confidence 6999999999999999999999999999983 000 00
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..|. .+...+.+.+++. |++++ ++.|+++..+ ++. ..|.+.+|.++.+|.||+|+|..
T Consensus 241 ----------~~d~-~~~~~l~~~l~~~-GI~i~~~~~V~~i~~~-~~~-~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 241 ----------GFDD-EMRAVVARNLEGR-GINLHPRTNLTQLTKT-EGG-IKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred ----------ccCH-HHHHHHHHHHHhC-CCEEEeCCEEEEEEEe-CCe-EEEEECCCcEEEcCEEEEeecCC
Confidence 0121 2445556667665 89987 6889999754 333 44667788889999999999964
No 304
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.50 E-value=0.00066 Score=74.85 Aligned_cols=97 Identities=28% Similarity=0.329 Sum_probs=73.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
.+|+|||||.+|+++|..|+++|++|+++|.. +..++..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~----------~~~~~~~------------------------------- 175 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAA----------DRLGGQL------------------------------- 175 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcc----------cccchhh-------------------------------
Confidence 58999999999999999999999999999983 1111110
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEE--EEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEG--VCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~g--V~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.. ..+...+.+.++.. +++++ +..+.++... .+.... +...++..+.+|.+++++|..
T Consensus 176 ------------~~-~~~~~~~~~~l~~~-gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 176 ------------LD-PEVAEELAELLEKY-GVELLLGTKVVGVEGK-GNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred ------------hh-HHHHHHHHHHHHHC-CcEEEeCCceEEEEcc-cCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 00 24566677778887 68885 7888988764 333333 577788889999999999975
No 305
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.48 E-value=0.00068 Score=76.26 Aligned_cols=95 Identities=25% Similarity=0.433 Sum_probs=69.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||.+|+++|..+++.|.+|+++++. +.. +..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~----------~~~------------------l~~-------------- 187 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE----------DRI------------------LPD-------------- 187 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC----------ccc------------------Cch--------------
Confidence 36999999999999999999999999999973 000 000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..+ ..+...+.+.+++. |++++ ++.|+++.. ++++..+.+.++ ++.+|.||+|+|..
T Consensus 188 -----------~~~-~~~~~~l~~~l~~~-gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~d~vi~a~G~~ 245 (444)
T PRK09564 188 -----------SFD-KEITDVMEEELREN-GVELHLNEFVKSLIG--EDKVEGVVTDKG-EYEADVVIVATGVK 245 (444)
T ss_pred -----------hcC-HHHHHHHHHHHHHC-CCEEEcCCEEEEEec--CCcEEEEEeCCC-EEEcCEEEECcCCC
Confidence 011 13455666677776 88887 689999853 456666666555 79999999999975
No 306
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.00085 Score=75.97 Aligned_cols=93 Identities=25% Similarity=0.355 Sum_probs=66.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
+|+|||||.+|+++|..+++.|.+|+|+++. +...
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~----------~~ll----------------------------------- 206 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMA----------PQLL----------------------------------- 206 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecC----------CCcC-----------------------------------
Confidence 6999999999999999999999999999973 0000
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc--cEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG--~~i~Ad~VVlAtG~~ 230 (699)
+ ..+ ..+...+.+.+++. |++++ ++.|+++..+ +....+.. +| .++.+|.||+|+|..
T Consensus 207 --~-------~~d-~e~~~~l~~~L~~~-GI~i~~~~~V~~i~~~--~~~v~~~~-~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 207 --P-------GED-EDIAHILREKLEND-GVKIFTGAALKGLNSY--KKQALFEY-EGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred --c-------ccc-HHHHHHHHHHHHHC-CCEEEECCEEEEEEEc--CCEEEEEE-CCceEEEEeCEEEEecCCc
Confidence 0 011 13455566777775 89987 5889988643 33332332 34 368999999999964
No 307
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.47 E-value=0.00023 Score=80.67 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
...+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 3478999999999999999999999999999984
No 308
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.44 E-value=0.00068 Score=77.96 Aligned_cols=67 Identities=18% Similarity=0.077 Sum_probs=54.3
Q ss_pred ccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---Cc--cEEecCeEEEecCCCC
Q 048823 163 VWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---FG--MNFYAPSVVLTTGTFM 231 (699)
Q Consensus 163 ~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG--~~i~Ad~VVlAtG~~~ 231 (699)
.+.+.+++|+..+...+...+.++ |++++ +++|+++..+ ++++++|++. +| .+|.|+.||+|+|.|+
T Consensus 118 ~~~~dg~vdp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 118 VKVPDGTVDPFRLVAANVLDAQEH-GARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred EEeCCcEECHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 344456789999999999999887 78876 6999999876 6788888864 24 3799999999999994
No 309
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.44 E-value=0.0003 Score=84.77 Aligned_cols=103 Identities=19% Similarity=0.257 Sum_probs=63.6
Q ss_pred EEEECCChHHHHHHHHHHHc---CCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhc
Q 048823 80 VIVVGGGHAGCEAALASARL---GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLN 156 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~---G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~ 156 (699)
|||||||+||+.+|..|.+. +++|+|+++.. ..+...|. +... +.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~-~~~y~r~~----------L~~~---l~g----------------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEP-HPNYNRIL----------LSSV---LQG----------------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCC-CCCccccc----------ccHH---HCC-----------------
Confidence 68999999999999998875 46899999841 11110000 0000 000
Q ss_pred cCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 157 TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 157 ~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..+...+.....+.+++. +++++ ++.|+.+..+ .+ .|.+.+|.++.+|.+|+|||+.
T Consensus 50 ------------~~~~~~l~~~~~~~~~~~-gv~~~~g~~V~~Id~~--~k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 50 ------------EADLDDITLNSKDWYEKH-GITLYTGETVIQIDTD--QK--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred ------------CCCHHHccCCCHHHHHHC-CCEEEcCCeEEEEECC--CC--EEEECCCcEeeCCEEEECCCCC
Confidence 001111111112233444 89987 5789999754 22 4677888889999999999985
No 310
>PTZ00058 glutathione reductase; Provisional
Probab=97.44 E-value=0.00099 Score=77.06 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=67.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||..|++.|..+++.|.+|+|+++. +.+.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~----------~~il---------------------------------- 273 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARG----------NRLL---------------------------------- 273 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEec----------cccc----------------------------------
Confidence 35999999999999999999999999999983 0000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC-ccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF-GMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d-G~~i~Ad~VVlAtG~~ 230 (699)
+ ..|. .+...+.+.+++. |+.++ +..|.++..++++.+. +...+ ++++.+|.||+|+|..
T Consensus 274 ---~-------~~d~-~i~~~l~~~L~~~-GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 274 ---R-------KFDE-TIINELENDMKKN-NINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred ---c-------cCCH-HHHHHHHHHHHHC-CCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCC
Confidence 0 1122 2345556667765 89987 6889888754222333 33334 4579999999999964
No 311
>PLN02576 protoporphyrinogen oxidase
Probab=97.40 E-value=0.00017 Score=82.29 Aligned_cols=34 Identities=38% Similarity=0.441 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHHHc-CCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARL-GAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~-G~kV~LlE~~ 109 (699)
.++||+|||||++||+||+.|++. |.+|+|+|+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~ 45 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEAR 45 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 347899999999999999999999 9999999996
No 312
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.38 E-value=0.001 Score=74.91 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=67.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|++.|..+++.|.+|+|+++. +.+..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~----------~~l~~---------------------------------- 185 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRS----------DKINK---------------------------------- 185 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecc----------cccch----------------------------------
Confidence 6999999999999999999999999999973 00000
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..|. .+...+.+.+++. |+.++ ++.|+++. .. .|++.+|+.+.+|.||+|+|..
T Consensus 186 ----------~~d~-~~~~~l~~~l~~~-gI~i~~~~~v~~i~---~~---~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 186 ----------LMDA-DMNQPILDELDKR-EIPYRLNEEIDAIN---GN---EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred ----------hcCH-HHHHHHHHHHHhc-CCEEEECCeEEEEe---CC---EEEECCCCEEEeCEEEECcCCC
Confidence 0111 2344556667765 89987 68899885 22 3666778889999999999975
No 313
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=97.37 E-value=0.0018 Score=72.07 Aligned_cols=35 Identities=46% Similarity=0.627 Sum_probs=32.4
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+..||.+|||+|.||+.+|+.+++.|.+|.++.+-
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl 87 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKL 87 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhcCceEEEEecc
Confidence 45599999999999999999999999999999885
No 314
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.37 E-value=0.00019 Score=81.58 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+..+|||||||+||++||.+|.+.|.+|+|+|..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR 47 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR 47 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEecc
Confidence 4578999999999999999999999999999986
No 315
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.37 E-value=0.0013 Score=74.52 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=66.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||..|++.|..+++.|.+|+|+|+. +.+.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~----------~~il---------------------------------- 210 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL----------DRIC---------------------------------- 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC----------CCCC----------------------------------
Confidence 35999999999999999999999999999973 0000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---C--ccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---F--GMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---d--G~~i~Ad~VVlAtG~~ 230 (699)
+ ..|+ .+...+.+.+++. |++++ ++.|+++..+ ++.+ .+.+. + +..+.+|.||+|+|..
T Consensus 211 ---~-------~~d~-~~~~~l~~~l~~~-gV~i~~~~~V~~i~~~-~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 211 ---P-------GTDT-ETAKTLQKALTKQ-GMKFKLGSKVTGATAG-ADGV-SLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred ---C-------CCCH-HHHHHHHHHHHhc-CCEEEECcEEEEEEEc-CCeE-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 0 0121 2344556667765 89987 6899999754 2332 33322 2 3479999999999963
No 316
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.36 E-value=0.00019 Score=81.98 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc-----cEEecCeEEEecCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG-----MNFYAPSVVLTTGTF 230 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG-----~~i~Ad~VVlAtG~~ 230 (699)
.+.++|.+.+++. |+++. +++|++|..+ ++++.+|.+.+| +++.||.||.++...
T Consensus 233 ~l~~aL~~~~~~~-G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 233 TLSDRLVEALKRD-GGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHhc-CCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 4567777878776 66775 7999999887 577778877665 579999999999875
No 317
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.35 E-value=0.0015 Score=74.73 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=68.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
+++|||||..|++.|..|++.|.+|+|+++. . . +.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~---------~------------------l~---------------- 218 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS--I---------P------------------LR---------------- 218 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--c---------c------------------cc----------------
Confidence 6999999999999999999999999999862 0 0 00
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..|. .+.+.+.+.+++. |++++ ++.+..+... ++. ..|.+.+|+++.+|.||+|+|..
T Consensus 219 ----------~~d~-~~~~~l~~~l~~~-GV~i~~~~~v~~v~~~-~~~-~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 219 ----------GFDR-QCSEKVVEYMKEQ-GTLFLEGVVPINIEKM-DDK-IKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred ----------cCCH-HHHHHHHHHHHHc-CCEEEcCCeEEEEEEc-CCe-EEEEECCCCEEEcCEEEEeeCCC
Confidence 1121 2445566667776 89987 5788888653 233 45667788889999999999964
No 318
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.34 E-value=0.0016 Score=74.18 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=67.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|+++|..+++.|.+|+|+++. +.+.
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~----------~~~l----------------------------------- 219 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEAL----------PAFL----------------------------------- 219 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCC----------CccC-----------------------------------
Confidence 6999999999999999999999999999983 0000
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC--c--cEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF--G--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d--G--~~i~Ad~VVlAtG~~ 230 (699)
+ ..| ..+...+.+.+++. |+.++ ++.|+++..+ ++. ..|.+.+ | ..+.+|.||+|+|..
T Consensus 220 --~-------~~d-~~~~~~~~~~l~~~-gi~i~~~~~v~~i~~~-~~~-v~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 220 --A-------AAD-EQVAKEAAKAFTKQ-GLDIHLGVKIGEIKTG-GKG-VSVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred --C-------cCC-HHHHHHHHHHHHHc-CcEEEeCcEEEEEEEc-CCE-EEEEEEeCCCceeEEEcCEEEEccCCc
Confidence 0 012 13444555666665 89987 6899999754 333 3455443 3 479999999999964
No 319
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.34 E-value=0.00062 Score=74.78 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=68.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-------------CceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchh
Q 048823 78 FDVIVVGGGHAGCEAALASARLG-------------AKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKV 144 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G-------------~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~ 144 (699)
-+++|||||+.|++.|-+|+.+- .+|.|||++ |.+-
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~----------p~IL--------------------- 204 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAG----------PRIL--------------------- 204 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccC----------chhc---------------------
Confidence 46999999999999999987642 278888873 1110
Q ss_pred hchhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc-EEecCe
Q 048823 145 ADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM-NFYAPS 222 (699)
Q Consensus 145 ~d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~-~i~Ad~ 222 (699)
......+.....+.+++. ||++. ++.|+++..+ +|++.+|. +|.++.
T Consensus 205 ------------------------p~~~~~l~~~a~~~L~~~-GV~v~l~~~Vt~v~~~------~v~~~~g~~~I~~~t 253 (405)
T COG1252 205 ------------------------PMFPPKLSKYAERALEKL-GVEVLLGTPVTEVTPD------GVTLKDGEEEIPADT 253 (405)
T ss_pred ------------------------cCCCHHHHHHHHHHHHHC-CCEEEcCCceEEECCC------cEEEccCCeeEecCE
Confidence 011224566777788887 99997 7999999742 47888887 499999
Q ss_pred EEEecCCC
Q 048823 223 VVLTTGTF 230 (699)
Q Consensus 223 VVlAtG~~ 230 (699)
||=|+|..
T Consensus 254 vvWaaGv~ 261 (405)
T COG1252 254 VVWAAGVR 261 (405)
T ss_pred EEEcCCCc
Confidence 99999975
No 320
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.34 E-value=0.00022 Score=78.19 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+||+|||||++|+++|+.|++.|.+|+|+|++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~ 33 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKR 33 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 79999999999999999999999999999985
No 321
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.34 E-value=0.00071 Score=81.83 Aligned_cols=103 Identities=12% Similarity=0.194 Sum_probs=63.5
Q ss_pred cEEEECCChHHHHHHHHHHHc----CCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHh
Q 048823 79 DVIVVGGGHAGCEAALASARL----GAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRV 154 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~----G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~ 154 (699)
+|||||||+||+.+|..|.+. +++|+|+++.. .....+|. +... +++.
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~-~~~Y~r~~----------L~~~---~~~~-------------- 56 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP-RIAYDRVH----------LSSY---FSHH-------------- 56 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC-CCcccCCc----------chHh---HcCC--------------
Confidence 699999999999999999765 47899999841 11111110 0000 0000
Q ss_pred hccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 155 LNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 155 ~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
....+.....+.+.+ .+++++ .+.|+.+..+ . ..|.+.+|.++.+|.+|+|||+.
T Consensus 57 ----------------~~~~l~~~~~~~~~~-~gI~~~~g~~V~~Id~~--~--~~V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 57 ----------------TAEELSLVREGFYEK-HGIKVLVGERAITINRQ--E--KVIHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred ----------------CHHHccCCCHHHHHh-CCCEEEcCCEEEEEeCC--C--cEEEECCCcEEECCEEEECCCCC
Confidence 000111111222333 389987 5789888643 2 24667888889999999999986
No 322
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.33 E-value=0.00021 Score=80.31 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLG--AKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~ 109 (699)
+|+|||||++|++||+.|++.| ++|+|+|+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~ 34 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEAS 34 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcC
Confidence 5999999999999999999988 899999986
No 323
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.33 E-value=0.00098 Score=69.30 Aligned_cols=34 Identities=35% Similarity=0.532 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHc--CCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARL--GAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~ 109 (699)
..||.||||||++|++.|.+|.-+ +.+|.|+|+.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke 82 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKE 82 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehh
Confidence 469999999999999999999877 8999999986
No 324
>PRK14727 putative mercuric reductase; Provisional
Probab=97.30 E-value=0.0021 Score=73.24 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=67.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|++.|..+++.|.+|+|+++. . . +.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~---------~------------------l~---------------- 224 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS--T---------L------------------LF---------------- 224 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--C---------C------------------CC----------------
Confidence 6999999999999999999999999999862 0 0 00
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..|+ .+...+.+.+++. |+.++ ++.|+.+..+ ++ .+.|.+.++ ++.+|.||+|+|..
T Consensus 225 ----------~~d~-~~~~~l~~~L~~~-GV~i~~~~~V~~i~~~-~~-~~~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 225 ----------REDP-LLGETLTACFEKE-GIEVLNNTQASLVEHD-DN-GFVLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred ----------cchH-HHHHHHHHHHHhC-CCEEEcCcEEEEEEEe-CC-EEEEEEcCC-eEEeCEEEEccCCC
Confidence 0111 2444566667665 89987 6889988754 23 334555555 68999999999986
No 325
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.30 E-value=0.0022 Score=72.21 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=68.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|++.|..+++.|.+|+|+++. +...
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~----------~~~l----------------------------------- 194 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAA----------SLFL----------------------------------- 194 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecC----------CCCC-----------------------------------
Confidence 6999999999999999999999999999973 0000
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+ ..++ .+...+.+.+++. |++++ ++.|+++..+ ++. +.+.+.++ ++.+|.||+|+|..
T Consensus 195 --~-------~~~~-~~~~~l~~~l~~~-gV~v~~~~~v~~i~~~-~~~-v~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 195 --P-------REDR-DIADNIATILRDQ-GVDIILNAHVERISHH-ENQ-VQVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred --C-------CcCH-HHHHHHHHHHHhC-CCEEEeCCEEEEEEEc-CCE-EEEEEcCC-eEEeCEEEEeecCC
Confidence 0 0111 2445566677775 89987 6889999754 333 34555555 58999999999976
No 326
>PRK14694 putative mercuric reductase; Provisional
Probab=97.30 E-value=0.0022 Score=72.84 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=67.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||..|++.|..|++.|.+|+|+++. . .. .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~--------~l-------------------~--------------- 214 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS--R--------VL-------------------S--------------- 214 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--C--------CC-------------------C---------------
Confidence 36999999999999999999999999999862 0 00 0
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..++ .+...+.+.+++. |++++ ++.|+.+..+ +..+.+.+.++ ++.+|.||+|+|..
T Consensus 215 -----------~~~~-~~~~~l~~~l~~~-GI~v~~~~~v~~i~~~--~~~~~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 215 -----------QEDP-AVGEAIEAAFRRE-GIEVLKQTQASEVDYN--GREFILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred -----------CCCH-HHHHHHHHHHHhC-CCEEEeCCEEEEEEEc--CCEEEEEECCC-EEEeCEEEEccCCC
Confidence 0111 2345566667765 89987 5889988754 33344555555 69999999999976
No 327
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.29 E-value=0.00043 Score=81.58 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..+|+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~ 342 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRH 342 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCC
Confidence 468999999999999999999999999999984
No 328
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.27 E-value=0.0022 Score=73.12 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=66.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.++|||||..|+++|..+++.|.+|+|+++. . . +
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~---------~------------------l----------------- 215 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS--I---------L------------------L----------------- 215 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec--c---------c------------------c-----------------
Confidence 5999999999999999999999999999862 0 0 0
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc---cEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG---MNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG---~~i~Ad~VVlAtG~~ 230 (699)
+ ..|+ .+...+.+.+++. |++++ ++.++.+... ++. ..|++.+| .++.+|.||+|+|..
T Consensus 216 --~-------~~d~-~~~~~l~~~L~~~-gV~i~~~~~v~~v~~~-~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 216 --R-------GFDQ-DCANKVGEHMEEH-GVKFKRQFVPIKVEQI-EAK-VKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred --c-------ccCH-HHHHHHHHHHHHc-CCEEEeCceEEEEEEc-CCe-EEEEEecCCcceEEEeCEEEEEecCC
Confidence 0 1121 3445566677776 89987 5778888654 232 34555554 379999999999964
No 329
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.27 E-value=0.00027 Score=79.79 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHc----CCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARL----GAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~----G~kV~LlE~~ 109 (699)
.||+|||||++||+||+.|++. |++|+|+|+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~ 38 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEAS 38 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcC
Confidence 5899999999999999999999 9999999986
No 330
>PRK10262 thioredoxin reductase; Provisional
Probab=97.27 E-value=0.0019 Score=69.36 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=67.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||+|..|+++|..|++.|.+|+++++. +.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~----------~~~~---------------------------------- 182 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRR----------DGFR---------------------------------- 182 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEEC----------CccC----------------------------------
Confidence 36999999999999999999999999999983 0000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc------cEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG------MNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG------~~i~Ad~VVlAtG~~ 230 (699)
.+ ..+...+.+.+++. +++++ ++.++++..+ ++++.+|++.++ +++.+|.||+|+|..
T Consensus 183 ------------~~-~~~~~~~~~~l~~~-gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 183 ------------AE-KILIKRLMDKVENG-NIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred ------------CC-HHHHHHHHhhccCC-CeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 00 01223445556554 89987 5889998743 345667776532 379999999999964
No 331
>PLN02546 glutathione reductase
Probab=97.22 E-value=0.0027 Score=73.51 Aligned_cols=95 Identities=19% Similarity=0.105 Sum_probs=67.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
+|+|||||..|++.|..+++.|.+|+|+++. +.+. .
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~----------~~il------------------~---------------- 289 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQ----------KKVL------------------R---------------- 289 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEec----------cccc------------------c----------------
Confidence 6999999999999999999999999999973 0000 0
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..|. .+...+.+.+++. ||+++ ++.|+++..+ ++....|.+.++....+|.||+|+|..
T Consensus 290 ----------~~d~-~~~~~l~~~L~~~-GV~i~~~~~v~~i~~~-~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 290 ----------GFDE-EVRDFVAEQMSLR-GIEFHTEESPQAIIKS-ADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred ----------ccCH-HHHHHHHHHHHHC-CcEEEeCCEEEEEEEc-CCCEEEEEECCeEEEecCEEEEeeccc
Confidence 0111 2344556667665 89987 6888888754 233344556666444589999999964
No 332
>PLN02268 probable polyamine oxidase
Probab=97.21 E-value=0.00035 Score=78.39 Aligned_cols=31 Identities=45% Similarity=0.502 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+|+|||||++|++||+.|.+.|++|+|+|+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~ 32 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESR 32 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 6999999999999999999999999999986
No 333
>PRK13748 putative mercuric reductase; Provisional
Probab=97.19 E-value=0.0025 Score=73.98 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=67.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
.|+|||||..|++.|..+++.|.+|+|+++. .. +.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~----------~~-------------------l~---------------- 306 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARS----------TL-------------------FF---------------- 306 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecC----------cc-------------------cc----------------
Confidence 6999999999999999999999999999972 00 00
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
..|+ .+...+.+.+++. |++++ ++.|+++..+ ++ ...+.+.++ ++.+|.||+|+|..
T Consensus 307 ----------~~d~-~~~~~l~~~l~~~-gI~i~~~~~v~~i~~~-~~-~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 307 ----------REDP-AIGEAVTAAFRAE-GIEVLEHTQASQVAHV-DG-EFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred ----------ccCH-HHHHHHHHHHHHC-CCEEEcCCEEEEEEec-CC-EEEEEecCC-eEEeCEEEEccCCC
Confidence 0111 2344556667665 89987 6899998754 33 334555555 69999999999964
No 334
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.17 E-value=0.0023 Score=71.68 Aligned_cols=90 Identities=27% Similarity=0.274 Sum_probs=66.5
Q ss_pred cEEEECCChHHHHHHHHHHH--------------cCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchh
Q 048823 79 DVIVVGGGHAGCEAALASAR--------------LGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKV 144 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr--------------~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~ 144 (699)
.|+|||||++|++.|..|+. .|.+|+|+++. +.. +.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~----------~~l------------------l~-- 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG----------SEV------------------LG-- 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC----------Ccc------------------cc--
Confidence 69999999999999999886 37899999973 000 00
Q ss_pred hchhhhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeE
Q 048823 145 ADMCYLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSV 223 (699)
Q Consensus 145 ~d~~~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~V 223 (699)
..+. .+...+.+.+++. ||+++ ++.|+++.. + .|.+.+|+++.+|.|
T Consensus 225 ------------------------~~~~-~~~~~~~~~L~~~-gV~v~~~~~v~~v~~---~---~v~~~~g~~i~~d~v 272 (424)
T PTZ00318 225 ------------------------SFDQ-ALRKYGQRRLRRL-GVDIRTKTAVKEVLD---K---EVVLKDGEVIPTGLV 272 (424)
T ss_pred ------------------------cCCH-HHHHHHHHHHHHC-CCEEEeCCeEEEEeC---C---EEEECCCCEEEccEE
Confidence 0111 3445566777776 89998 789998852 2 367889999999999
Q ss_pred EEecCCC
Q 048823 224 VLTTGTF 230 (699)
Q Consensus 224 VlAtG~~ 230 (699)
|.|+|..
T Consensus 273 i~~~G~~ 279 (424)
T PTZ00318 273 VWSTGVG 279 (424)
T ss_pred EEccCCC
Confidence 9999953
No 335
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.17 E-value=0.0012 Score=74.20 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHH-HHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALAS-ARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~L-Ar~G~kV~LlE~~ 109 (699)
..|+|||||+||+.||..| ++.|++|.|+|+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~ 72 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKL 72 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecC
Confidence 4599999999999999976 4679999999994
No 336
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.17 E-value=0.0033 Score=67.98 Aligned_cols=145 Identities=23% Similarity=0.196 Sum_probs=84.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcC-CceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccch-----hhchh
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLG-AKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGK-----VADMC 148 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~-----~~d~~ 148 (699)
...+|+|.||-|++-++.|..+...+ .+++.+|+. ..+.|.+....-|....-.+++++-.+...... .....
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerk-p~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERK-PDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecC-CCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 35699999999999999999999876 789999996 333333322222222222233333222211100 00111
Q ss_pred hhhHHhhccCCCccccccccccCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEE--EEEcCccEEecCeEEEe
Q 048823 149 YLQKRVLNTSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEG--VCTFFGMNFYAPSVVLT 226 (699)
Q Consensus 149 ~i~~~~~~~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~g--V~t~dG~~i~Ad~VVlA 226 (699)
+--+++++...- .+.+.+|.++++-.+...+.+. ++++|++|..-+.+.... |++.++..++|+.+|++
T Consensus 82 ~RLy~Fl~~e~f--------~i~R~Ey~dY~~Waa~~l~~~r-fg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg 152 (436)
T COG3486 82 GRLYEFLNYETF--------HIPRREYNDYCQWAASQLPSLR-FGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLG 152 (436)
T ss_pred chHhhhhhhhcc--------cccHHHHHHHHHHHHhhCCccc-cCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEc
Confidence 111222222211 3467778887777777664443 467788663222333344 67778889999999999
Q ss_pred cCC
Q 048823 227 TGT 229 (699)
Q Consensus 227 tG~ 229 (699)
+|+
T Consensus 153 ~G~ 155 (436)
T COG3486 153 VGT 155 (436)
T ss_pred cCC
Confidence 997
No 337
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.00058 Score=71.37 Aligned_cols=33 Identities=33% Similarity=0.605 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.||.+|||+|.+|+..|..|++.|.+|+|||+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR 33 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKR 33 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEecc
Confidence 389999999999999999999999999999995
No 338
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.11 E-value=0.0039 Score=70.85 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=64.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
+|+|||||..|++.|..+++.|.+|+|||+. +.+ +
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~----------~~i------------------l----------------- 210 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF----------DQV------------------I----------------- 210 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecC----------CCC------------------C-----------------
Confidence 6999999999999999999999999999973 000 0
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC--c--cEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF--G--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d--G--~~i~Ad~VVlAtG~~ 230 (699)
+ ..|. .+...+.+.+++. +.++ ++.|+.+..+ ++. ..|.+.+ | .++.+|.||+|+|..
T Consensus 211 --~-------~~d~-~~~~~~~~~l~~~--v~i~~~~~v~~i~~~-~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 211 --P-------AADK-DIVKVFTKRIKKQ--FNIMLETKVTAVEAK-EDG-IYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred --C-------cCCH-HHHHHHHHHHhhc--eEEEcCCEEEEEEEc-CCE-EEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 0 1121 2344555556554 7776 6889888754 233 3454433 2 369999999999964
No 339
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0019 Score=66.95 Aligned_cols=48 Identities=13% Similarity=0.019 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHHccCCeEEEeeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCC
Q 048823 170 TDKREYAMRMKNIVESTANLCIREAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 170 ~d~~~~~~~L~~~l~~~~gv~i~~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~ 231 (699)
.+...|..+|.+.+.+. |+++++-+|+++..- . .=.+|.||.|||-++
T Consensus 148 sE~~~ylpyl~k~l~e~-Gvef~~r~v~~l~E~--~-----------~~~~DVivNCtGL~a 195 (342)
T KOG3923|consen 148 SEGPKYLPYLKKRLTEN-GVEFVQRRVESLEEV--A-----------RPEYDVIVNCTGLGA 195 (342)
T ss_pred ccchhhhHHHHHHHHhc-CcEEEEeeeccHHHh--c-----------cCCCcEEEECCcccc
Confidence 47778999999999997 999999999988521 0 014799999999874
No 340
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.08 E-value=0.0044 Score=72.93 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
.|+|||||..|++.|..+++.|.+|+|+|+
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~ 343 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEY 343 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 699999999999999999999999999998
No 341
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.06 E-value=0.0036 Score=65.98 Aligned_cols=90 Identities=24% Similarity=0.322 Sum_probs=64.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||+|..|+.+|..+++.|.+|+++++. +...
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~----------~~~~---------------------------------- 177 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR----------DKFR---------------------------------- 177 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeC----------cccC----------------------------------
Confidence 47999999999999999999999999999973 0000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc---Cc--cEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF---FG--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---dG--~~i~Ad~VVlAtG~~ 230 (699)
.+ ..+.+.+.+..++.++ ++.++++..+ +++.++.+. +| .++.+|.||+|+|..
T Consensus 178 ------------~~-----~~~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 178 ------------AE-----KILLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred ------------cC-----HHHHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 00 0122334444589887 6889998743 466666543 23 479999999999943
No 342
>PRK12831 putative oxidoreductase; Provisional
Probab=97.03 E-value=0.0027 Score=72.05 Aligned_cols=31 Identities=39% Similarity=0.545 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
-.|+|||||..|+.+|..|++.|.+|+|+.+
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r 312 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYR 312 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence 3699999999999999999999999999997
No 343
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.94 E-value=0.0075 Score=68.24 Aligned_cols=95 Identities=25% Similarity=0.266 Sum_probs=64.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.|+|||||..|++.|..+++.|.+|+|+++. +....
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~----------~~~l~--------------------------------- 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERG----------DRILP--------------------------------- 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecC----------CCcCc---------------------------------
Confidence 36999999999999999999999999999983 11000
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCc--cEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFG--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG--~~i~Ad~VVlAtG~~ 230 (699)
..|+ .+...+.+.+++. +.++ ++.|+++..+ ++..+.++..+| .++.+|.||+|+|..
T Consensus 207 -----------~~d~-~~~~~~~~~l~~~--I~i~~~~~v~~i~~~-~~~~v~~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 207 -----------LEDP-EVSKQAQKILSKE--FKIKLGAKVTSVEKS-GDEKVEELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred -----------chhH-HHHHHHHHHHhhc--cEEEcCCEEEEEEEc-CCceEEEEEcCCceEEEEeCEEEEccCCc
Confidence 0111 2344555666654 7776 6889998754 221122323333 479999999999964
No 344
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.00079 Score=73.80 Aligned_cols=34 Identities=35% Similarity=0.498 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+..||||||+|.+||.||+.|.+.|++|+|+|..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar 39 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEAR 39 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEecc
Confidence 4589999999999999999999999999999975
No 345
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.91 E-value=0.00089 Score=75.80 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=28.3
Q ss_pred CCCEEEecccCCCchHHHHHHHHHHHHHHHHHH
Q 048823 407 VEGLFFSGQINGTTGYEEAAAQGIISGINAARH 439 (699)
Q Consensus 407 i~gLf~AGqi~G~~Gy~eA~a~G~~Ag~naa~~ 439 (699)
.+|||+||+-....|.+-|+.+|.-||..++..
T Consensus 428 ~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~ 460 (463)
T PRK12416 428 YPNIYLAGASYYGVGIGACIGNGKNTANEIIAT 460 (463)
T ss_pred CCCeEEeccccccccHHHHHHHHHHHHHHHHHH
Confidence 589999999888889999999999888777654
No 346
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.00096 Score=74.33 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|+|+|||+||++||+.|+.+|+.|+|+|.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEecc
Confidence 4999999999999999999999999999996
No 347
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.89 E-value=0.0034 Score=68.17 Aligned_cols=138 Identities=20% Similarity=0.156 Sum_probs=64.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCC--ceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGA--KTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKR 153 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~--kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~ 153 (699)
....|+|||||-++.+.+..|.+.+. +|.++-|+........+ +..-.... ...++.+..... ....+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s-~f~ne~f~---P~~v~~f~~l~~------~~R~~ 258 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDS-PFVNEIFS---PEYVDYFYSLPD------EERRE 258 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB-----CCHHGGGS---HHHHHHHHTS-H------HHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccc-cchhhhcC---chhhhhhhcCCH------HHHHH
Confidence 34679999999999999999999875 79999885211110000 00000000 111111111111 01111
Q ss_pred hhccCCCccccccccccCHHH----HHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC-----ccEEecCeE
Q 048823 154 VLNTSRGPAVWALRAQTDKRE----YAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF-----GMNFYAPSV 223 (699)
Q Consensus 154 ~~~~s~g~~~~~~r~~~d~~~----~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d-----G~~i~Ad~V 223 (699)
++...+. .....+++.. |.....+.+.....+.++ +++|+++...++++ +.+.+.+ ..++.+|.|
T Consensus 259 ~l~~~~~----~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~D~V 333 (341)
T PF13434_consen 259 LLREQRH----TNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG-VRLTLRHRQTGEEETLEVDAV 333 (341)
T ss_dssp HHHHTGG----GTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS-EEEEEEETTT--EEEEEESEE
T ss_pred HHHHhHh----hcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE-EEEEEEECCCCCeEEEecCEE
Confidence 1111110 0011334432 334444455544567887 59999998763333 4455443 237899999
Q ss_pred EEecC
Q 048823 224 VLTTG 228 (699)
Q Consensus 224 VlAtG 228 (699)
|+|||
T Consensus 334 ilATG 338 (341)
T PF13434_consen 334 ILATG 338 (341)
T ss_dssp EE---
T ss_pred EEcCC
Confidence 99999
No 348
>PLN02568 polyamine oxidase
Probab=96.88 E-value=0.0012 Score=76.23 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=31.3
Q ss_pred CcccEEEECCChHHHHHHHHHHHcC-----CceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLG-----AKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G-----~kV~LlE~~ 109 (699)
+..||+|||||++|++||..|++.| .+|+|+|++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~ 42 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG 42 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCC
Confidence 3478999999999999999999988 899999986
No 349
>PLN02676 polyamine oxidase
Probab=96.78 E-value=0.0015 Score=74.47 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..+||+|||||++|++||+.|++.|. +|+|+|++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~ 59 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEAT 59 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCC
Confidence 35899999999999999999999998 59999996
No 350
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.76 E-value=0.0049 Score=69.77 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~ 108 (699)
-.|+|||||..|+.+|..|++.|. +|+++++
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~ 305 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYR 305 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeee
Confidence 369999999999999999999998 8999997
No 351
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.68 E-value=0.0017 Score=72.41 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLG--AKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~ 109 (699)
.|+|||||++||+||+.|++.+ +.++|+|++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~ 34 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 3899999999999999999999 999999996
No 352
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.67 E-value=0.0058 Score=70.51 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=69.8
Q ss_pred EEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccCC
Q 048823 80 VIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTSR 159 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s~ 159 (699)
-+|||||.-|+++|..|...|.+|.+++.. ..-+-+.+
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~-----------------~~lMerQL------------------------- 185 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIA-----------------PTLMERQL------------------------- 185 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeec-----------------chHHHHhh-------------------------
Confidence 689999999999999999999999999862 00111112
Q ss_pred CccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 160 GPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 160 g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
|+. -...|+..+++. |+.++ +..++.+.. .+++.+|++.||..+.||.||.|+|-.
T Consensus 186 -----------D~~-ag~lL~~~le~~-Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 186 -----------DRT-AGRLLRRKLEDL-GIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred -----------hhH-HHHHHHHHHHhh-cceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccc
Confidence 221 123456666666 88886 555555543 578999999999999999999999965
No 353
>PLN02529 lysine-specific histone demethylase 1
Probab=96.62 E-value=0.0022 Score=75.94 Aligned_cols=34 Identities=35% Similarity=0.399 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
...||+|||||++|++||..|+++|++|+|+|+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~ 192 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGR 192 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Confidence 4578999999999999999999999999999986
No 354
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.48 E-value=0.0031 Score=75.21 Aligned_cols=34 Identities=38% Similarity=0.451 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
...+|+|||||++|++||+.|++.|++|+|+|+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~ 270 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGR 270 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecc
Confidence 3578999999999999999999999999999996
No 355
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.31 E-value=0.014 Score=70.18 Aligned_cols=31 Identities=35% Similarity=0.590 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCc-eeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAK-TLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~k-V~LlE~~ 109 (699)
.|+|||||..|+.+|..+.+.|.+ |+|+++.
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 699999999999999999999997 9999973
No 356
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.18 E-value=0.018 Score=68.24 Aligned_cols=41 Identities=15% Similarity=0.005 Sum_probs=33.5
Q ss_pred ccccCCCCCEEEecccCCC-chHHHHHHHHHHHHHHHHHHhcC
Q 048823 401 SLMTKKVEGLFFSGQINGT-TGYEEAAAQGIISGINAARHSDG 442 (699)
Q Consensus 401 ~letk~i~gLf~AGqi~G~-~Gy~eA~a~G~~Ag~naa~~~~~ 442 (699)
+++| ++||+|+|||+.+. .-..+|+++|..||.++.+++.+
T Consensus 612 ~~~T-s~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 612 RYQT-SNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred Cccc-CCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 3556 48999999998754 44579999999999999998764
No 357
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.10 E-value=0.026 Score=65.51 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=35.5
Q ss_pred CcccccCCCCCEEEecccCCC--chHHHHHHHHHHHHHHHHHHhcCC
Q 048823 399 YRSLMTKKVEGLFFSGQINGT--TGYEEAAAQGIISGINAARHSDGK 443 (699)
Q Consensus 399 ~~~letk~i~gLf~AGqi~G~--~Gy~eA~a~G~~Ag~naa~~~~~~ 443 (699)
+..++| .+||+|++||+++. .....|+.+|.+||.|+.+++.+.
T Consensus 266 d~~~~T-s~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 266 NEDMET-NVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCcccc-CCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhh
Confidence 345666 58999999999753 446789999999999999988664
No 358
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.06 E-value=0.032 Score=68.46 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
-+|+|||||..|+.+|..+.+.|.+|+++.+
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~r 478 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYR 478 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEe
Confidence 3699999999999999999999999999987
No 359
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=95.96 E-value=0.03 Score=60.10 Aligned_cols=95 Identities=17% Similarity=0.277 Sum_probs=70.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
..+|||||..|++.+---.+.|.+|+++|-- +.+++
T Consensus 213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~----------~~i~~---------------------------------- 248 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFL----------DQIGG---------------------------------- 248 (506)
T ss_pred eEEEEcCceeeeehhhHHHhcCCeEEEEEeh----------hhhcc----------------------------------
Confidence 4899999999999999999999999999962 11111
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC---c--cEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF---G--MNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d---G--~~i~Ad~VVlAtG~~ 230 (699)
.+|. .+...+++.+.++ ++.|. .+.|+....+.+| .+.|.+.+ | ++++||.+.+|+|..
T Consensus 249 ----------~mD~-Eisk~~qr~L~kQ-gikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 249 ----------VMDG-EISKAFQRVLQKQ-GIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred ----------ccCH-HHHHHHHHHHHhc-CceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 1232 3566667777776 88886 7999999876444 44455433 3 389999999999963
No 360
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.90 E-value=0.088 Score=60.15 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.||||||||++|++||..|++.|.+|+|+|++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~ 33 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQH 33 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 48999999999999999999999999999997
No 361
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.024 Score=60.01 Aligned_cols=76 Identities=28% Similarity=0.334 Sum_probs=57.3
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhc
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLN 156 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~ 156 (699)
--||.|||||-+|++||+-||-.-..|+|+|-. .++
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~----------------------~eL---------------------- 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA----------------------PEL---------------------- 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecc----------------------hhh----------------------
Confidence 368999999999999999999777789999941 000
Q ss_pred cCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcC
Q 048823 157 TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFF 214 (699)
Q Consensus 157 ~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~d 214 (699)
.-...|++.+.+.+|++++ +..-+++.-+ +.+|.|+...|
T Consensus 390 -----------------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~d 430 (520)
T COG3634 390 -----------------KADAVLQDKLRSLPNVTIITNAQTTEVKGD-GDKVTGLEYRD 430 (520)
T ss_pred -----------------hhHHHHHHHHhcCCCcEEEecceeeEEecC-CceecceEEEe
Confidence 1234577888899999997 6777777643 46787776544
No 362
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=95.78 E-value=0.01 Score=64.40 Aligned_cols=39 Identities=38% Similarity=0.503 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCce--eEEeeecccccCC
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKT--LLLTLNIDKIAWQ 116 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV--~LlE~~~~~~g~~ 116 (699)
.+|+|||||++|+++||+|++++.+| +|+|...-..||.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 57999999999999999999998765 5599863333443
No 363
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.74 E-value=0.01 Score=67.69 Aligned_cols=33 Identities=33% Similarity=0.348 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~ 175 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERE 175 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecC
Confidence 368999999999999999999999999999984
No 364
>PLN03000 amine oxidase
Probab=95.69 E-value=0.013 Score=70.19 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
...||+|||||++|+.+|..|++.|++|+|+|+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~ 216 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGR 216 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3578999999999999999999999999999986
No 365
>PLN02976 amine oxidase
Probab=95.56 E-value=0.015 Score=72.19 Aligned_cols=34 Identities=38% Similarity=0.481 Sum_probs=31.9
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..+||+|||||++|+.+|+.|++.|++|+|+|+.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~ 725 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEAR 725 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeec
Confidence 3489999999999999999999999999999986
No 366
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.36 E-value=0.073 Score=65.09 Aligned_cols=32 Identities=38% Similarity=0.563 Sum_probs=27.9
Q ss_pred ccEEEECCChHHHHHHHHHHHc-C-CceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARL-G-AKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~-G-~kV~LlE~~ 109 (699)
-.|+|||||..|+.+|..+.+. | .+|+|+.+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr 702 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 702 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEcc
Confidence 3699999999999999999988 4 389999973
No 367
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.34 E-value=0.075 Score=65.93 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=63.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLN 156 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~ 156 (699)
-.|+|||+|..|+.+|..|++.|. .|+|+|.. +..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~----------~~~---------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR----------ADV---------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccC----------cch----------------------------------
Confidence 369999999999999999999995 57888862 000
Q ss_pred cCCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEc----CccEEecCeEEEecCCCC
Q 048823 157 TSRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTF----FGMNFYAPSVVLTTGTFM 231 (699)
Q Consensus 157 ~s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~----dG~~i~Ad~VVlAtG~~~ 231 (699)
...+.+.+++. ||.++ ++.|+.+.- ++++.+|++. ++.++.||.|+++.|...
T Consensus 354 -------------------~~~l~~~L~~~-GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~P 411 (985)
T TIGR01372 354 -------------------SPEARAEAREL-GIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTP 411 (985)
T ss_pred -------------------hHHHHHHHHHc-CCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCc
Confidence 00123345554 88887 578888863 4566677654 456899999999999653
No 368
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.29 E-value=0.039 Score=59.65 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=39.7
Q ss_pred HHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 175 YAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 175 ~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+.++-.+.+++ +||.++ +..|.++.+. .+. ..+.+.||.+++.|.||+|+|--
T Consensus 395 ls~wt~ekir~-~GV~V~pna~v~sv~~~-~~n-l~lkL~dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 395 LSQWTIEKIRK-GGVDVRPNAKVESVRKC-CKN-LVLKLSDGSELRTDLVVVAVGEE 448 (659)
T ss_pred HHHHHHHHHHh-cCceeccchhhhhhhhh-ccc-eEEEecCCCeeeeeeEEEEecCC
Confidence 34444555666 499998 7888888765 233 34788999999999999999964
No 369
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.23 E-value=0.58 Score=52.61 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHccCCeEEE-eeEEEEEEecCCC---CEEEEEE-cCcc--EE---ecCeEEEecCCCC
Q 048823 174 EYAMRMKNIVESTANLCIR-EAMVTDILLGKND---NVEGVCT-FFGM--NF---YAPSVVLTTGTFM 231 (699)
Q Consensus 174 ~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g---~v~gV~t-~dG~--~i---~Ad~VVlAtG~~~ 231 (699)
.+..-|.+.|+++ ||.+. ++.|++|..+.++ .+..+.. .+|. .| .-|.|+++.|+..
T Consensus 208 Sii~Pl~~~L~~~-GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 208 SIILPLIRYLKSQ-GVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHC-CCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 4567788889887 99986 8999999876322 2334443 4443 23 2588888889764
No 370
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.20 E-value=0.079 Score=65.67 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=27.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-eeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAK-TLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~k-V~LlE~ 108 (699)
-+|+|||||..|+.+|..+.+.|.+ |+++.+
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~r 603 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYR 603 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEee
Confidence 4699999999999999999999985 777776
No 371
>PRK13984 putative oxidoreductase; Provisional
Probab=94.86 E-value=0.08 Score=62.21 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=24.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC------ceeEEe
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA------KTLLLT 107 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~------kV~LlE 107 (699)
-.|+|||||..|+.+|..|++.|. +|.++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 369999999999999999998864 566653
No 372
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.57 E-value=0.14 Score=60.66 Aligned_cols=32 Identities=38% Similarity=0.589 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
-.|+|||||..|+.+|..+.+.|. +|+|+.+.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 369999999999999999999997 59999873
No 373
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.41 E-value=0.17 Score=62.17 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=31.5
Q ss_pred cccCCCCCEEEecccC-CCchHHHHHHHHHHHHHHHHHHh
Q 048823 402 LMTKKVEGLFFSGQIN-GTTGYEEAAAQGIISGINAARHS 440 (699)
Q Consensus 402 letk~i~gLf~AGqi~-G~~Gy~eA~a~G~~Ag~naa~~~ 440 (699)
++| .+||+|++||+. |......|+++|..||.|++...
T Consensus 801 ~~T-s~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 801 GET-NITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred Ccc-CCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 444 489999999986 66777899999999999998653
No 374
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.19 Score=53.74 Aligned_cols=88 Identities=24% Similarity=0.323 Sum_probs=63.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-||+|||||-+.+..|+.|++.+.+|+|+=+...
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~---------------------------------------------- 177 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE---------------------------------------------- 177 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc----------------------------------------------
Confidence 3899999999999999999999999999987300
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc----EEecCeEEEecCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM----NFYAPSVVLTTGT 229 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~----~i~Ad~VVlAtG~ 229 (699)
+.. ...+.+.+.+.+++.++ ++.+.++.-+ + +.+|+..+.. .+.++.|.++.|.
T Consensus 178 ------------~ra---~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~~~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 178 ------------FRA---EEILVERLKKNVKIEVLTNTVVKEILGD--D-VEGVVLKNVKGEEKELPVDGVFIAIGH 236 (305)
T ss_pred ------------cCc---CHHHHHHHHhcCCeEEEeCCceeEEecC--c-cceEEEEecCCceEEEEeceEEEecCC
Confidence 000 22345556666678876 6899998732 3 7778777632 5566666666665
No 375
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=94.30 E-value=0.055 Score=59.84 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLG-AKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~~ 109 (699)
..|||||||.||++||..|-..| ..|+|+|..
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEec
Confidence 46999999999999999999776 579999975
No 376
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=94.07 E-value=0.042 Score=58.36 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.+|.|||+|++|++||+.|+++ ++|+|+|.+
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~ 39 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD 39 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEecc
Confidence 5699999999999999999976 589999986
No 377
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.04 E-value=0.13 Score=62.50 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=24.7
Q ss_pred ccEEEECCChHHHHHHHHHHH---cCCceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASAR---LGAKTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr---~G~kV~LlE~ 108 (699)
-.|||||||..|+.+|..+.+ .+..+.+.+.
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~ 584 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDY 584 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhh
Confidence 359999999999999997765 3666777664
No 378
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.53 E-value=0.14 Score=57.97 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
-.|+|||+|..|+..|..|++.+.+|+|+.+.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 46999999999999999999999999999984
No 379
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=93.10 E-value=0.21 Score=55.43 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=32.5
Q ss_pred CeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCC
Q 048823 188 NLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGT 229 (699)
Q Consensus 188 gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~ 229 (699)
+++++ ++.|+.+... + ..|.+.+|+.+..+.+|+|||+
T Consensus 141 gIe~~~~t~v~~~D~~-~---K~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLA-S---KTLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeecc-c---cEEEeCCCceeecceEEEeecC
Confidence 88886 6999999764 2 3588999999999999999998
No 380
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=92.67 E-value=0.3 Score=56.39 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
-+|+|||+|.+|+-.|..|++...+|.+.-|.
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~ 215 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRR 215 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence 47999999999999999999999999998885
No 381
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.63 E-value=0.28 Score=50.42 Aligned_cols=29 Identities=52% Similarity=0.677 Sum_probs=25.8
Q ss_pred EEEECCChHHHHHHHHHHHc--CCceeEEee
Q 048823 80 VIVVGGGHAGCEAALASARL--GAKTLLLTL 108 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~--G~kV~LlE~ 108 (699)
.+|||||+||.++|-+||.. ...++|+..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illita 32 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITA 32 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEec
Confidence 68999999999999999986 468999986
No 382
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.55 E-value=0.65 Score=50.94 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=36.2
Q ss_pred cCcccccCCCCCEEEecccCCCchHH----HHHHHHHHHHHHHHHHhcCC
Q 048823 398 CYRSLMTKKVEGLFFSGQINGTTGYE----EAAAQGIISGINAARHSDGK 443 (699)
Q Consensus 398 l~~~letk~i~gLf~AGqi~G~~Gy~----eA~a~G~~Ag~naa~~~~~~ 443 (699)
+++.|+.+.++|+|+.||++...|+. -|.-||-.+|.|--...++.
T Consensus 350 vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~ 399 (491)
T KOG2495|consen 350 VDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGG 399 (491)
T ss_pred eeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhccc
Confidence 57889999999999999999777765 56667888887776654443
No 383
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=0.15 Score=55.19 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=33.2
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 74 IDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.+..|||||||.|.--...|.+.+|.|.+|+=+|++
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn 40 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSN 40 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCc
Confidence 456799999999999999999999999999999984
No 384
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=92.16 E-value=0.19 Score=60.49 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..-..|.|||.|+||++||-+|-+.|+-|+|+||.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~ 1817 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERS 1817 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEec
Confidence 34578999999999999999999999999999994
No 385
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.13 E-value=0.17 Score=49.79 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=26.7
Q ss_pred EEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
|.|||+|..|...|..+++.|++|.|+|.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 789999999999999999999999999974
No 386
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.98 E-value=0.15 Score=48.89 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
|.|||||..|.+.|..|++.|++|.|..++
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 789999999999999999999999999984
No 387
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.51 E-value=1.9 Score=49.32 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=26.7
Q ss_pred cccCCCCCEEEecccC-CCchH-HHHHHHHHHHHHHHHHHhc
Q 048823 402 LMTKKVEGLFFSGQIN-GTTGY-EEAAAQGIISGINAARHSD 441 (699)
Q Consensus 402 letk~i~gLf~AGqi~-G~~Gy-~eA~a~G~~Ag~naa~~~~ 441 (699)
++| .+||+|++|++. |..|. -.+..++..|+.++...+.
T Consensus 382 ~~T-~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~ 422 (491)
T PLN02852 382 GAD-TEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLE 422 (491)
T ss_pred Ccc-CCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHH
Confidence 344 489999999966 55654 3666666777766666543
No 388
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.26 E-value=0.19 Score=49.77 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=25.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||.|+.|+.+|..+|+.|++|+.+|.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 3889999999999999999999999999974
No 389
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.18 E-value=0.29 Score=46.16 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
|+|+|+|..|+..|+.|++.|.+|.++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999983
No 390
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=90.98 E-value=0.86 Score=50.05 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=31.2
Q ss_pred HHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCcc--EEecCeEEEecCCC
Q 048823 177 MRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGM--NFYAPSVVLTTGTF 230 (699)
Q Consensus 177 ~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~--~i~Ad~VVlAtG~~ 230 (699)
....+.+.+. ++.+. .+.|.++. ++-..+.+.||+ +|..-.+|-|||.-
T Consensus 277 ~yae~~f~~~-~I~~~~~t~Vk~V~----~~~I~~~~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 277 EYAENQFVRD-GIDLDTGTMVKKVT----EKTIHAKTKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred HHHHHHhhhc-cceeecccEEEeec----CcEEEEEcCCCceeeecceEEEecCCCC
Confidence 3334444443 88887 57787774 333445555664 67788899999964
No 391
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.53 E-value=0.27 Score=55.99 Aligned_cols=30 Identities=37% Similarity=0.420 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
.|+|||+|.+|+++|..|+++|.+|+++|+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~ 47 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDD 47 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 599999999999999999999999999996
No 392
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.22 E-value=0.26 Score=48.72 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=28.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
-.|+|||+|.+++.+|..|++.|.+|+++-|.
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~ 199 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRS 199 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecC
Confidence 56999999999999999999999999999884
No 393
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.18 E-value=1.2 Score=51.95 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=27.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLG-AKTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~ 108 (699)
-.|+|||||..|+..|..+.+.| .+|+|+.+
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r 299 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYR 299 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEe
Confidence 35999999999999999999999 56888887
No 394
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=90.17 E-value=0.24 Score=56.12 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=31.4
Q ss_pred CCCCEEEecccCCC----------chHHHHHHHHHHHHHHHHHHhcCC
Q 048823 406 KVEGLFFSGQINGT----------TGYEEAAAQGIISGINAARHSDGK 443 (699)
Q Consensus 406 ~i~gLf~AGqi~G~----------~Gy~eA~a~G~~Ag~naa~~~~~~ 443 (699)
.|||||.||++.|. .+..+|+..|++||.+|+.+++.+
T Consensus 417 ~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~~ 464 (466)
T PRK08274 417 PSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQHE 464 (466)
T ss_pred CCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhhc
Confidence 49999999998653 345699999999999999987643
No 395
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=89.51 E-value=0.36 Score=52.11 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARL--GAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~--G~kV~LlE~~ 109 (699)
.|+|||+|+||..+|..|-++ +++|.++|+.
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~ 54 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKL 54 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecC
Confidence 599999999999999999884 6899999994
No 396
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=0.62 Score=50.16 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=39.4
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHH
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEV 134 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el 134 (699)
..|||+|+|.|+.=+..+.+|+..|.+|+.||+ |+..|+...+--..++
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~----------Nd~YG~~~asltl~ql 53 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDK----------NDYYGSTSASLTLTQL 53 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeC----------CCccCccccceeHHHH
Confidence 369999999999999999999999999999999 4666665544333333
No 397
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.18 E-value=0.29 Score=51.47 Aligned_cols=33 Identities=42% Similarity=0.626 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..+|+|||||.+|..||.-+...|.+|+++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 367999999999999999999999999999985
No 398
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.06 E-value=0.37 Score=54.51 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
|+|||.|.+|+++|..|++.|++|++.|+.
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~ 32 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRN 32 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 899999999999999999999999999974
No 399
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=88.94 E-value=0.4 Score=53.84 Aligned_cols=28 Identities=50% Similarity=0.714 Sum_probs=27.2
Q ss_pred EECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 82 VVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 82 VIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
|||+|.+|++||+.|++.|.+|+||||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~ 28 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAA 28 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 7999999999999999999999999996
No 400
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=88.91 E-value=0.37 Score=56.26 Aligned_cols=34 Identities=32% Similarity=0.587 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 76 ERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 76 ~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.++||||||+|.+|++||+.+++.|++|+||||.
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~ 41 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKE 41 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecC
Confidence 4699999999999999999999999999999996
No 401
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=88.87 E-value=1.2 Score=48.82 Aligned_cols=40 Identities=25% Similarity=0.130 Sum_probs=30.1
Q ss_pred CeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCCCC
Q 048823 188 NLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTFMS 232 (699)
Q Consensus 188 gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~~~ 232 (699)
++.+. .+.|+.+..+ . ..|.+.+| .+..|.+|+|||+...
T Consensus 67 ~i~~~~~~~v~~id~~--~--~~v~~~~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 67 GIDVRTGTEVTSIDPE--N--KVVLLDDG-EIEYDYLVLATGARPR 107 (415)
T ss_pred CCEEeeCCEEEEecCC--C--CEEEECCC-cccccEEEEcCCCccc
Confidence 67776 5889988653 2 23667777 7899999999998743
No 402
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.83 E-value=0.49 Score=48.32 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+++|||+|-.|...|-.|++.|+.|+++|++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 4899999999999999999999999999986
No 403
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.41 E-value=0.63 Score=45.13 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..|+|+|+|.+|..||..|...|++|+++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 56999999999999999999999999999973
No 404
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.26 E-value=0.56 Score=47.16 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
.|+|||||.+|...+..|.+.|++|+|++.
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 599999999999999999999999999986
No 405
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.23 E-value=4.1 Score=44.71 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=30.8
Q ss_pred cCCeEEE-eeEEEEEEecCCCCEEEEEEc---C--ccEEecCeEEEecCCC
Q 048823 186 TANLCIR-EAMVTDILLGKNDNVEGVCTF---F--GMNFYAPSVVLTTGTF 230 (699)
Q Consensus 186 ~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---d--G~~i~Ad~VVlAtG~~ 230 (699)
.+.+.++ .++|..+....+|+ ..+.+. . .+++..|.||+|||-.
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence 4678888 59999998763443 444432 2 2488999999999954
No 406
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.22 E-value=1.1 Score=48.98 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=71.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHH--HcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhh
Q 048823 74 IDERFDVIVVGGGHAGCEAALASA--RLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQ 151 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LA--r~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~ 151 (699)
.+++...+|||||.+..+++.+.. ..+++|++|--.+.. |... .-+.+|+.+.+..-. ...+.
T Consensus 175 ~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepel-------PYmR----PPLSKELW~~~dpn~----~k~lr 239 (659)
T KOG1346|consen 175 LPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL-------PYMR----PPLSKELWWYGDPNS----AKKLR 239 (659)
T ss_pred CcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccC-------cccC----CCcchhceecCCCCh----hhhee
Confidence 456788999999998877766544 357788888543111 1111 123344433332110 00112
Q ss_pred HHhhccCCCcccccccc-ccCHHHHHHHHHHHHHccCCeEEEe-eEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCC
Q 048823 152 KRVLNTSRGPAVWALRA-QTDKREYAMRMKNIVESTANLCIRE-AMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGT 229 (699)
Q Consensus 152 ~~~~~~s~g~~~~~~r~-~~d~~~~~~~L~~~l~~~~gv~i~~-~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~ 229 (699)
|+-++.+.....+.+.. .+++..+-. + .++||-+.. -.|+.|..+ +. -|.++||.+|..|..+||||.
T Consensus 240 fkqwsGkeRsiffepd~FfvspeDLp~-----~-~nGGvAvl~G~kvvkid~~-d~---~V~LnDG~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 240 FKQWSGKERSIFFEPDGFFVSPEDLPK-----A-VNGGVAVLRGRKVVKIDEE-DK---KVILNDGTTIGYDKCLIATGV 309 (659)
T ss_pred ecccCCccceeEecCCcceeChhHCcc-----c-ccCceEEEeccceEEeecc-cC---eEEecCCcEeehhheeeecCc
Confidence 22222221111111111 223333222 1 236888875 778888654 22 378999999999999999998
Q ss_pred C
Q 048823 230 F 230 (699)
Q Consensus 230 ~ 230 (699)
.
T Consensus 310 ~ 310 (659)
T KOG1346|consen 310 R 310 (659)
T ss_pred C
Confidence 5
No 407
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=87.86 E-value=0.34 Score=52.62 Aligned_cols=44 Identities=39% Similarity=0.518 Sum_probs=37.2
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccc
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKS 128 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~ 128 (699)
..+|||+|+|.|..=|..+..|+..|.+|+.+|+ |+..|+...+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDr----------N~yYG~~sas 45 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDR----------NDYYGGESAS 45 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeC----------CCCCCccccc
Confidence 3459999999999999999999999999999999 4666665443
No 408
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.79 E-value=0.57 Score=50.14 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+|.|||+|..|...|..+++.|++|+++++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 5999999999999999999999999999983
No 409
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.61 E-value=0.68 Score=46.40 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||+|..|...|..|++.|. +++|+|.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 569999999999999999999999 69999974
No 410
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.49 E-value=0.42 Score=42.42 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
..|+|||||..|..-+..|.+.|.+|+|+.+
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 4699999999999999999999999999997
No 411
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.26 E-value=0.69 Score=42.98 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||+|..|...|..|++.|. +++|+|.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 459999999999999999999998 69999974
No 412
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.26 E-value=0.74 Score=44.27 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
-.|+|||||..|..-|..|.+.|++|+||.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 4599999999999999999999999999975
No 413
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.24 E-value=0.62 Score=52.50 Aligned_cols=32 Identities=38% Similarity=0.468 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
-.|+|||+|.+|+++|..|++.|++|+++|+.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35999999999999999999999999999983
No 414
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.11 E-value=0.71 Score=48.85 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|++|.++|.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4999999999999999999999999999973
No 415
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.07 E-value=0.9 Score=42.38 Aligned_cols=31 Identities=39% Similarity=0.460 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-eeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAK-TLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~k-V~LlE~ 108 (699)
..|+|||+|-+|-.++.+|+..|.+ |.|+.|
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR 44 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNR 44 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 4699999999999999999999987 999988
No 416
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=3 Score=42.10 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=63.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhccC
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNTS 158 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~s 158 (699)
-.+|||||-+.++-|..|.+.+.+|-+|-|.
T Consensus 159 ~laVIGGGDsA~EEA~fLtkyaskVyii~Rr------------------------------------------------- 189 (322)
T KOG0404|consen 159 PLAVIGGGDSAMEEALFLTKYASKVYIIHRR------------------------------------------------- 189 (322)
T ss_pred eeEEEcCcHHHHHHHHHHHhhccEEEEEEEh-------------------------------------------------
Confidence 4789999999999999999999999999873
Q ss_pred CCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEE-----EEEcCccEEecCeEEEecCCC
Q 048823 159 RGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEG-----VCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 159 ~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~g-----V~t~dG~~i~Ad~VVlAtG~~ 230 (699)
|.-+-...|++++.+.|+++++ ++.+.+..-+ .+.+-+ |.+.+-..+..+-+..|.|.-
T Consensus 190 ------------d~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~ 254 (322)
T KOG0404|consen 190 ------------DHFRASKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHS 254 (322)
T ss_pred ------------hhhhHHHHHHHHHhcCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccceeEEEecCC
Confidence 1112345677888888999986 6666665432 222222 333333467788888888853
No 417
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.16 E-value=0.85 Score=48.28 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|++|+++|++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3899999999999999999999999999984
No 418
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.14 E-value=0.88 Score=45.63 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
-.|+|||||-.|...|..|.+.|++|+|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 3599999999999999999999999999986
No 419
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.05 E-value=0.99 Score=47.30 Aligned_cols=32 Identities=38% Similarity=0.432 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLG-AKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~~ 109 (699)
..|+|||+|..|+.+|..|++.| -+++|+|.+
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46999999999999999999999 489999974
No 420
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.04 E-value=0.85 Score=48.32 Aligned_cols=31 Identities=35% Similarity=0.484 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|++|+++|..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECC
Confidence 4899999999999999999999999999984
No 421
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.03 E-value=0.85 Score=50.22 Aligned_cols=32 Identities=41% Similarity=0.630 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.+|+|||+|.+|..+|..|.+.|.+|.++++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 56999999999999999999999999999974
No 422
>PLN02976 amine oxidase
Probab=85.78 E-value=20 Score=46.03 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=31.2
Q ss_pred ccccCCCCC-EEEecccCCC--chH-HHHHHHHHHHHHHHHHHhcCCCC
Q 048823 401 SLMTKKVEG-LFFSGQINGT--TGY-EEAAAQGIISGINAARHSDGKSL 445 (699)
Q Consensus 401 ~letk~i~g-Lf~AGqi~G~--~Gy-~eA~a~G~~Ag~naa~~~~~~~~ 445 (699)
.|... +.| |||||+.+.. .|| +.|+.+|+.||..+...+....+
T Consensus 1144 ~LAeP-VggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976 1144 ILGRP-VENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGND 1191 (1713)
T ss_pred HHhCC-CCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccCc
Confidence 34433 556 9999997655 455 57888999999888877654433
No 423
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=85.73 E-value=0.75 Score=58.23 Aligned_cols=40 Identities=33% Similarity=0.427 Sum_probs=33.0
Q ss_pred CCCCEEEecccCCC-------ch--HHHHHHHHHHHHHHHHHHhcCCCC
Q 048823 406 KVEGLFFSGQINGT-------TG--YEEAAAQGIISGINAARHSDGKSL 445 (699)
Q Consensus 406 ~i~gLf~AGqi~G~-------~G--y~eA~a~G~~Ag~naa~~~~~~~~ 445 (699)
.|||||.||+++|. .| +.+|+..|++||.+|+.+++.++.
T Consensus 859 pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~~ 907 (1167)
T PTZ00306 859 PILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKKY 907 (1167)
T ss_pred eeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccCc
Confidence 59999999998653 12 358999999999999999888753
No 424
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.66 E-value=0.92 Score=48.16 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
.|.|||+|..|+..|..|++.|++|.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 389999999999999999999999999986
No 425
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.25 E-value=0.96 Score=49.37 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.+.|||.|.+|+..|..+|+.|+.|+.+|..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 4889999999999999999999999999974
No 426
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=85.17 E-value=0.68 Score=53.78 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHH---ccCCeEEE-eeEEEEEEecCCCCEEEEEEc---C--------------c-cEEecCeEEEecCCC
Q 048823 173 REYAMRMKNIVE---STANLCIR-EAMVTDILLGKNDNVEGVCTF---F--------------G-MNFYAPSVVLTTGTF 230 (699)
Q Consensus 173 ~~~~~~L~~~l~---~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~---d--------------G-~~i~Ad~VVlAtG~~ 230 (699)
..+...|.+.++ +.++++++ ++++++|+.+ +++|+||... + + ..+.|+.||+|||+|
T Consensus 148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf 226 (549)
T PRK12834 148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGI 226 (549)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCc
Confidence 345666666554 34568987 7999999986 7899999852 1 1 268899999999999
Q ss_pred CCCc
Q 048823 231 MSGK 234 (699)
Q Consensus 231 ~~~~ 234 (699)
..+.
T Consensus 227 ~~n~ 230 (549)
T PRK12834 227 GGNH 230 (549)
T ss_pred ccCH
Confidence 8763
No 427
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.15 E-value=1.1 Score=48.04 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5999999999999999999999999999983
No 428
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.84 E-value=1.1 Score=47.54 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
.|.|||+|..|...|..|++.|++|+++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 389999999999999999999999999997
No 429
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.80 E-value=1.1 Score=48.36 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|..-|..++..|++|+++|..
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3899999999999999999999999999974
No 430
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.42 E-value=3 Score=44.77 Aligned_cols=96 Identities=23% Similarity=0.241 Sum_probs=66.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeeecccccCCCCCCCCCCCccchhhHHHHhhcCccchhhchhhhhHHhhcc
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDKIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADMCYLQKRVLNT 157 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~~~~~g~~~c~~s~Gg~~~~~l~~el~~lg~~~~~~~d~~~i~~~~~~~ 157 (699)
-.++|||||..+++.|--++..|..|.|+=|.. ...+.
T Consensus 190 kr~vvvGaGYIavE~Agi~~gLgsethlfiR~~------------------kvLR~------------------------ 227 (478)
T KOG0405|consen 190 KRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE------------------KVLRG------------------------ 227 (478)
T ss_pred ceEEEEccceEEEEhhhHHhhcCCeeEEEEecc------------------hhhcc------------------------
Confidence 459999999999999999999999999987730 01110
Q ss_pred CCCccccccccccCHHHHHHHHHHHHHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 158 SRGPAVWALRAQTDKREYAMRMKNIVESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 158 s~g~~~~~~r~~~d~~~~~~~L~~~l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+|. .+...+.+.++.. |+.++ ++.++.+... +.....+.+..|.....|.++-|+|..
T Consensus 228 ------------FD~-~i~~~v~~~~~~~-ginvh~~s~~~~v~K~-~~g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 228 ------------FDE-MISDLVTEHLEGR-GINVHKNSSVTKVIKT-DDGLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred ------------hhH-HHHHHHHHHhhhc-ceeecccccceeeeec-CCCceEEEEeccccccccEEEEEecCC
Confidence 111 2334445555554 88887 6888888765 333344556666545589999999964
No 431
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=84.41 E-value=0.91 Score=42.55 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
++|+|+|+.+.+.|..++..|++|+|+|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 589999999999999999999999999974
No 432
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.38 E-value=1.2 Score=48.32 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||+|..|+.+|..|++.|. +++|+|.+
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 569999999999999999999998 89999984
No 433
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.28 E-value=1.3 Score=47.37 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..|.|||+|..|...|..|++.|++|+++.++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 35999999999999999999999999999983
No 434
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.23 E-value=1.4 Score=46.81 Aligned_cols=31 Identities=32% Similarity=0.384 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|++|+++|++
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4999999999999999999999999999973
No 435
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.14 E-value=1.1 Score=51.16 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
-.|+|+|+|++|+.|+..+...|.+|.++|..
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999999999975
No 436
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.03 E-value=1.4 Score=43.11 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHHHcCCc-eeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGAK-TLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~k-V~LlE~~ 109 (699)
|+|||+|..|...|..|++.|.. ++|+|.+
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 89999999999999999999984 9999974
No 437
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.97 E-value=1.2 Score=47.14 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|++|+++|++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3899999999999999999999999999974
No 438
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.96 E-value=1.2 Score=47.61 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLG--AKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~ 109 (699)
.|.|||+|.+|.++|+.|+..| ..+.|+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 4899999999999999999999 479999984
No 439
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.85 E-value=1.3 Score=48.22 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||+|..|..+|..|++.|+ +++|+|.+
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 459999999999999999999998 79999985
No 440
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=83.78 E-value=0.97 Score=49.39 Aligned_cols=41 Identities=24% Similarity=0.069 Sum_probs=31.4
Q ss_pred CeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 188 NLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 188 gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
+..++ ++.|+.|..+ +++ +.|.+.+|+++.||.||+|+...
T Consensus 223 g~~i~l~~~V~~I~~~-~~~-v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERE-DGG-VTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp GGGEESSEEEEEEEEE-SSE-EEEEETTSSEEEESEEEE-S-HH
T ss_pred CceeecCCcceecccc-ccc-cccccccceEEecceeeecCchh
Confidence 44665 8999999987 444 45888888899999999999875
No 441
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.72 E-value=1.3 Score=46.80 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|++|+++|.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 4999999999999999999999999999974
No 442
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.54 E-value=1.4 Score=47.22 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-ceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGA-KTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~ 108 (699)
.|.|||+|..|...|+.++..|+ +|+|+|.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999886 8999996
No 443
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.31 E-value=1.5 Score=43.92 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||.|..|.++|..|++.|. +++|+|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 569999999999999999999997 79999973
No 444
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.99 E-value=1.8 Score=38.70 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=27.0
Q ss_pred EEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
|+|||.|..|...|-.|.+.+.+|+++|.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 789999999999999999977799999985
No 445
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.84 E-value=1.6 Score=40.87 Aligned_cols=30 Identities=43% Similarity=0.613 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
|+|||.|..|++.|..|++.|. +++|+|.+
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 8999999999999999999998 69999974
No 446
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.57 E-value=1.7 Score=44.92 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||+|..|..+|..|++.|. +++|+|.+
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 569999999999999999999997 68888874
No 447
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=82.56 E-value=1.3 Score=51.89 Aligned_cols=39 Identities=46% Similarity=0.587 Sum_probs=35.3
Q ss_pred CCCCCCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 71 EWNIDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 71 ~~~~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+..++.++||+|||+|.+|+++|+.+++.|++|+|||+.
T Consensus 10 ~~~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~ 48 (578)
T PRK12843 10 PERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERT 48 (578)
T ss_pred CCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 344666899999999999999999999999999999985
No 448
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=82.18 E-value=1.6 Score=47.31 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
.|.|||+|..|...|..|++.|++|.++++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEec
Confidence 499999999999999999999999999997
No 449
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=82.00 E-value=3.3 Score=46.34 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=29.7
Q ss_pred cCcccccCCCCCEEEecccCCCc-----------hHHHHHHHHHHHHHHHH
Q 048823 398 CYRSLMTKKVEGLFFSGQINGTT-----------GYEEAAAQGIISGINAA 437 (699)
Q Consensus 398 l~~~letk~i~gLf~AGqi~G~~-----------Gy~eA~a~G~~Ag~naa 437 (699)
.++.+++ ..||+|.+||+.+.. -...|..||.+||.|.+
T Consensus 253 vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 253 VNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred ECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 5567887 489999999998641 12467788999888875
No 450
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=81.87 E-value=1.7 Score=44.91 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=28.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcC-----------CceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASARLG-----------AKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G-----------~kV~LlE~~ 109 (699)
...|+|||+|..|+.++..||+.| .+++|+|.+
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 467999999999999999999974 278888863
No 451
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=81.66 E-value=1.3 Score=51.78 Aligned_cols=37 Identities=43% Similarity=0.642 Sum_probs=34.4
Q ss_pred CCCCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 73 NIDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 73 ~~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.++.++||||||+|.+|++||+.+++.|++|+|||+.
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~ 43 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKS 43 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcC
Confidence 3566799999999999999999999999999999996
No 452
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.63 E-value=15 Score=41.35 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC--ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA--KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~--kV~LlE~~ 109 (699)
-+|+|+|.|..=+-.-+.+.++|+ +++++.|.
T Consensus 197 drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRr 230 (474)
T COG4529 197 DRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRR 230 (474)
T ss_pred CceEEecCCchhHHHHHHHhccCCccceEEEecc
Confidence 459999999999999999999996 59999885
No 453
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=81.44 E-value=2 Score=43.39 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-eeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAK-TLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~k-V~LlE~~ 109 (699)
..|+|||+|..|...|..|++.|.. ++|+|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5699999999999999999999985 9999974
No 454
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.35 E-value=1.8 Score=48.31 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
-.|+|+|+|+.|+.+|..|...|++|+++|..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 35999999999999999999999999999873
No 455
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=81.21 E-value=1.7 Score=46.02 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=28.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~ 108 (699)
..|+|||+|-+|.++|+.|++.|. +|.|+++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 469999999999999999999997 6999988
No 456
>PRK08328 hypothetical protein; Provisional
Probab=81.12 E-value=2 Score=44.04 Aligned_cols=32 Identities=34% Similarity=0.391 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||+|..|+.+|..|++.|. +++|+|.+
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 469999999999999999999997 68899863
No 457
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.70 E-value=2 Score=44.38 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||.|..|+.+|..|++.|. +++|+|.+
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 569999999999999999999997 79999873
No 458
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=80.08 E-value=2.2 Score=43.52 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc---eeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAK---TLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~k---V~LlE~~ 109 (699)
..|+|+|+|-+|..+|..|.+.|.+ +.|+++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 3599999999999999999999975 9999983
No 459
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.61 E-value=2.6 Score=41.00 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=28.8
Q ss_pred cccEEEECCCh-HHHHHHHHHHHcCCceeEEee
Q 048823 77 RFDVIVVGGGH-AGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 77 ~~DVvVIGgG~-AGl~AA~~LAr~G~kV~LlE~ 108 (699)
...|+|||+|- +|..+|..|.+.|.+|.++.+
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 36799999996 699999999999999999987
No 460
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.56 E-value=2.5 Score=45.15 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|++|++++++
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4999999999999999999999999999973
No 461
>PRK04148 hypothetical protein; Provisional
Probab=79.41 E-value=1.7 Score=40.59 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.+++||.| .|...|..|++.|+.|+.+|.+
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECC
Confidence 49999999 9999999999999999999974
No 462
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.18 E-value=2 Score=48.00 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||.|..|+..|..|++.|++|++++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence 3889999999999999999999999999974
No 463
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=79.04 E-value=2.5 Score=43.03 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
..|+|||||.++..=+..|.+.|.+|+|+-.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 4699999999999999999999999999976
No 464
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.98 E-value=2.5 Score=43.39 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=27.7
Q ss_pred EEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
|+|||+|..|++.+..|++.|. +++|+|.+
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 8999999999999999999997 68899973
No 465
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.80 E-value=2.4 Score=47.51 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||.|..|+..|..|++.|++|+++|++
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence 4999999999999999999999999999974
No 466
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.79 E-value=2.6 Score=43.06 Aligned_cols=32 Identities=38% Similarity=0.358 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||.|..|+++|..|++.|. +++|+|.+
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 469999999999999999999997 78899873
No 467
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.61 E-value=2.4 Score=45.58 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..|++.|++|.++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3889999999999999999999999999984
No 468
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=78.38 E-value=2.8 Score=41.84 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=29.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||.|..|++.|..|++.|. +++|+|.+
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 569999999999999999999998 49999973
No 469
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=78.36 E-value=2.8 Score=44.41 Aligned_cols=31 Identities=35% Similarity=0.438 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|.+|.++|++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3999999999999999999999999999974
No 470
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.35 E-value=2.4 Score=46.70 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLG-AKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G-~kV~LlE~~ 109 (699)
+|+|||+|..|..+|..||+.| .+|++.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 6999999999999999999999 899999995
No 471
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.31 E-value=2.8 Score=45.15 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..|++.|++|.++++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5999999999999999999999999999983
No 472
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=78.04 E-value=2.2 Score=45.41 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHHHcCC-ceeEEee
Q 048823 80 VIVVGGGHAGCEAALASARLGA-KTLLLTL 108 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~-kV~LlE~ 108 (699)
|.|||+|..|...|..++..|+ .|+|+|.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di 30 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDI 30 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeC
Confidence 5799999999999999999887 9999997
No 473
>PRK08223 hypothetical protein; Validated
Probab=77.85 E-value=2.9 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||+|-.|+.+|..|++.|. ++.|+|.+
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 569999999999999999999997 68888863
No 474
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=77.69 E-value=2.6 Score=48.15 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=29.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..|+|+|+|.+|+.++..+...|.+|.++|.+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56999999999999999999999999999975
No 475
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=77.61 E-value=1.8 Score=50.40 Aligned_cols=35 Identities=40% Similarity=0.605 Sum_probs=32.9
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
..++||+|||+|.+|++||+.+++.|++|+|||+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~ 39 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKA 39 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 34699999999999999999999999999999995
No 476
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=77.59 E-value=2.7 Score=44.90 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLG--AKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~ 109 (699)
.|.|||+|.+|.++|+.|+..| ..+.|+|++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3899999999999999999999 479999984
No 477
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.49 E-value=2.4 Score=50.93 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..++..|++|+|+|..
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDIN 345 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCC
Confidence 4999999999999999999999999999974
No 478
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.48 E-value=3 Score=42.78 Aligned_cols=32 Identities=44% Similarity=0.449 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||.|..|..+|..|++.|. +.+|+|.+
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 469999999999999999999997 79999973
No 479
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.44 E-value=2.3 Score=47.81 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|+|+|+|..|+++|..|++.|++|++.|+.
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3899999999999999999999999999863
No 480
>PRK12839 hypothetical protein; Provisional
Probab=77.26 E-value=1.9 Score=50.45 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=33.0
Q ss_pred CCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 75 DERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 75 ~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
+.++||+|||+|.+|++||+.|++.|.+|+|||+.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~ 40 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA 40 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 45799999999999999999999999999999985
No 481
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=77.22 E-value=2.7 Score=44.55 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
|+|||+|..|++.+..|++.|. ++.|+|.+
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 8999999999999999999997 68898874
No 482
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=77.14 E-value=2.1 Score=50.04 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 74 IDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
++.++||+|||+|.+|+++|+.+++.|++|+|||+.
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~ 44 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD 44 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 456799999999999999999999999999999985
No 483
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=77.13 E-value=3.2 Score=41.47 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
..|+|||.|..|++.|..|++.|. +++|+|.+
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 459999999999999999999998 58899863
No 484
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.91 E-value=3 Score=44.23 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=28.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCc-eeEEee
Q 048823 78 FDVIVVGGGHAGCEAALASARLGAK-TLLLTL 108 (699)
Q Consensus 78 ~DVvVIGgG~AGl~AA~~LAr~G~k-V~LlE~ 108 (699)
-.++|+|+|-+|.++|+.|++.|.+ |.|+.|
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3589999999999999999999986 999987
No 485
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=76.87 E-value=9.4 Score=45.03 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=34.6
Q ss_pred HHccCCeEEE-eeEEEEEEecCCCCEEEEEEcCccEEecCeEEEecCCC
Q 048823 183 VESTANLCIR-EAMVTDILLGKNDNVEGVCTFFGMNFYAPSVVLTTGTF 230 (699)
Q Consensus 183 l~~~~gv~i~-~~~V~~l~~e~~g~v~gV~t~dG~~i~Ad~VVlAtG~~ 230 (699)
.+++ +++++ ...|+.+..+ . ..|+++.|.++..|.+|+|||++
T Consensus 69 y~~~-~i~L~~~~~v~~idr~--~--k~V~t~~g~~~~YDkLilATGS~ 112 (793)
T COG1251 69 YEEN-GITLYTGEKVIQIDRA--N--KVVTTDAGRTVSYDKLIIATGSY 112 (793)
T ss_pred HHHc-CcEEEcCCeeEEeccC--c--ceEEccCCcEeecceeEEecCcc
Confidence 4454 89987 6899999754 3 34788899999999999999986
No 486
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=76.70 E-value=3 Score=44.63 Aligned_cols=31 Identities=29% Similarity=0.421 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..|++.|+.|.+++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 4999999999999999999999999999973
No 487
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=76.58 E-value=2.7 Score=47.02 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHHHcCC------ceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGA------KTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~------kV~LlE~~ 109 (699)
|+|||+|..|++++..|+..|. +++|+|.+
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D 37 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMD 37 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCC
Confidence 8999999999999999999998 79999974
No 488
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.36 E-value=2.7 Score=50.43 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..++..|++|+|+|.+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDIN 345 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 5999999999999999999999999999974
No 489
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=76.31 E-value=2.9 Score=47.98 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||+|..|...|..+++.|++|+|+|+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3999999999999999999999999999985
No 490
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=76.25 E-value=6.4 Score=44.29 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=29.1
Q ss_pred CCcccEEEECC-ChHHHHHHHHHHHc-------CC--ceeEEeee
Q 048823 75 DERFDVIVVGG-GHAGCEAALASARL-------GA--KTLLLTLN 109 (699)
Q Consensus 75 ~~~~DVvVIGg-G~AGl~AA~~LAr~-------G~--kV~LlE~~ 109 (699)
.....|.|||+ |..|.++|+.|+.. |. +++++|.+
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~ 142 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERS 142 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCC
Confidence 34477999999 99999999999988 65 67888863
No 491
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.13 E-value=3 Score=44.74 Aligned_cols=30 Identities=33% Similarity=0.564 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 80 VIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 80 VvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
|+|||+|..|++.|..|+..|. +++|+|.+
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 8999999999999999999997 69999973
No 492
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=76.12 E-value=3.1 Score=47.38 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLG--AKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G--~kV~LlE~~ 109 (699)
.|.|||.|..|+.+|..+|+.| ++|+.+|.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 4999999999999999999985 789999974
No 493
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=76.00 E-value=4 Score=38.35 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=27.3
Q ss_pred cEEEECC-ChHHHHHHHHHHHcCC--ceeEEee
Q 048823 79 DVIVVGG-GHAGCEAALASARLGA--KTLLLTL 108 (699)
Q Consensus 79 DVvVIGg-G~AGl~AA~~LAr~G~--kV~LlE~ 108 (699)
.|.|||+ |..|...|+.|...+. ++.|+|.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~ 34 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI 34 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEecc
Confidence 4899999 9999999999999875 6999997
No 494
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=75.64 E-value=3.5 Score=41.27 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~ 108 (699)
.|+|+|.|-.|..+|..|.+.|++|++.|.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~ 59 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADI 59 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 499999999999999999999999999886
No 495
>PRK06223 malate dehydrogenase; Reviewed
Probab=75.35 E-value=3.4 Score=44.07 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-ceeEEee
Q 048823 79 DVIVVGGGHAGCEAALASARLGA-KTLLLTL 108 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~ 108 (699)
.|.|||+|..|...|..++..|. .|.|+|.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 59999999999999999999876 8999997
No 496
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=75.07 E-value=2.3 Score=48.93 Aligned_cols=35 Identities=37% Similarity=0.575 Sum_probs=32.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 74 IDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
++.++||||||+| +|++||+.|++.|++|+|||+.
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~ 38 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT 38 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence 4557999999999 9999999999999999999986
No 497
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=74.87 E-value=2.7 Score=48.96 Aligned_cols=35 Identities=40% Similarity=0.637 Sum_probs=32.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 74 IDERFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 74 ~~~~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
++.+|||||||+| +|++||+.+++.|++|+||||.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~ 47 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKS 47 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecC
Confidence 3568999999999 8999999999999999999995
No 498
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=74.70 E-value=3.4 Score=45.84 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
.|.|||.|..|+..|..+|. |++|+++|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECC
Confidence 38899999999999988885 9999999984
No 499
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.57 E-value=3.8 Score=43.67 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHHHcCCceeEEeee
Q 048823 77 RFDVIVVGGGHAGCEAALASARLGAKTLLLTLN 109 (699)
Q Consensus 77 ~~DVvVIGgG~AGl~AA~~LAr~G~kV~LlE~~ 109 (699)
...|+|||.|.+|..+|..|.+.|.+|.++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 357999999999999999999999999999984
No 500
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=74.41 E-value=3.9 Score=43.03 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCC-ceeEEeee
Q 048823 79 DVIVVGGGHAGCEAALASARLGA-KTLLLTLN 109 (699)
Q Consensus 79 DVvVIGgG~AGl~AA~~LAr~G~-kV~LlE~~ 109 (699)
.|+|+|+|-++.+++++|++.|. +|.|+.|.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 69999999999999999999997 49999883
Done!