BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048824
         (209 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WH7|A Chain A, Solution Structure Of Homeobox Domain Of Arabidopsis
           Thaliana Hypothetical Protein F22k18.140
          Length = 80

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query: 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNA 187
           +KR RTKFT EQK+KML FAER+GWR+Q+ DDVA+ QFC E GV+R VLK+WMHNNKN+
Sbjct: 17  TKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75


>pdb|1WH5|A Chain A, Solution Structure Of Homeobox Domain Of
           Arabidopsisthaliana Zinc Finger Homeobox Family Protein
          Length = 80

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 47/58 (81%)

Query: 130 KRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNA 187
           KR RTKFT EQK++ML  AERIGWR+QRQDD  + +FC E GV R VLKVW+HNNK++
Sbjct: 18  KRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHS 75


>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
           Binding Transcription Factor 1 (Atbf1)
          Length = 80

 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 163 LNQFCNEVGVKRHVLKVWMHNNK 185
           L+   +EVG+K+ V++VW  N +
Sbjct: 47  LDHIAHEVGLKKRVVQVWFQNTR 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,233,963
Number of Sequences: 62578
Number of extensions: 225986
Number of successful extensions: 371
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 12
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)