BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048824
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
GN=At4g24660 PE=1 SV=1
Length = 220
Score = 163 bits (413), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 106/186 (56%), Gaps = 37/186 (19%)
Query: 22 INYKECMKNHAASIGGHANDGCCEFMPRADD----SLTCAACGCHRNFHRREVRGQLLLQ 77
I Y+EC+KNHA +IGGHA DGCCEFMP +D +L CAACGCHRNFHR+E
Sbjct: 47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETE------ 100
Query: 78 PKRLLLFKDPTKLVGAVDRYDEYDRRSETPEREEVNLNVCP----------------PGN 121
+ G R Y R P + L++ N
Sbjct: 101 -----------SIGGRAHRVPTYYNRPPQPHQPPGYLHLTSPAAPYRPPAASGDEEDTSN 149
Query: 122 VGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWM 181
+ G +KR RTKFT EQK+KML FAER+GWR+Q+ DDVA+ QFC E GV+R VLK+WM
Sbjct: 150 PSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWM 209
Query: 182 HNNKNA 187
HNNKN+
Sbjct: 210 HNNKNS 215
>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
GN=At5g65410 PE=1 SV=1
Length = 279
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 97/186 (52%), Gaps = 29/186 (15%)
Query: 22 INYKECMKNHAASIGGHANDGCCEFMPRAD----DSLTCAACGCHRNFHRREV------- 70
++EC+KN A +IGGHA DGC EFMP D+L CAACGCHRNFHR+E+
Sbjct: 73 FRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELPYFHHAP 132
Query: 71 --------RGQLLLQPKRLLLFKDPTKLVGAVDRYDEYDR-RSETPEREEVNLNVCPPGN 121
P + P++ R RSE P +
Sbjct: 133 PQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETS---------S 183
Query: 122 VGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWM 181
G KR RTKFT EQK++ML AERIGWR+QRQDD + +FC E GV R VLKVW+
Sbjct: 184 AEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWL 243
Query: 182 HNNKNA 187
HNNK+
Sbjct: 244 HNNKHT 249
>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
Length = 242
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 103/188 (54%), Gaps = 28/188 (14%)
Query: 22 INYKECMKNHAASIGGHANDGCCEFMPRAD------DSLTCAACGCHRNFHRREVRGQL- 74
+ YKEC+KNHAA++GGHA DGC EFMP SL CAACGCHRNFHRR+ L
Sbjct: 29 VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLN 88
Query: 75 -LLQPKRLLLFKDPTKLVGAVDRYDEYD-----RRSETPEREEVNLNVCPPG--NVGPAT 126
L P P+ R+ S P ++L+ PG + P
Sbjct: 89 FLTAPP----ISSPSGTESPPSRHVSSPVPCSYYTSAPPHHVILSLSSGFPGPSDQDPTV 144
Query: 127 GKS---------KRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVL 177
+S KR RTKFT EQK KM FAE+ GW++ D+ ++ +FCNEVG++R VL
Sbjct: 145 VRSENSSRGAMRKRTRTKFTPEQKIKMRAFAEKAGWKINGCDEKSVREFCNEVGIERGVL 204
Query: 178 KVWMHNNK 185
KVWMHNNK
Sbjct: 205 KVWMHNNK 212
>sp|Q9R1R0|LHX6_MOUSE LIM/homeobox protein Lhx6 OS=Mus musculus GN=Lhx6 PE=1 SV=2
Length = 363
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 129 SKRQRTKFTQEQKDKM-LEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNA 187
+KR RT FT EQ M +FA+ D L + + G+ R V++VW N + A
Sbjct: 219 AKRARTSFTAEQLQVMQAQFAQD-----NNPDAQTLQKLADMTGLSRRVIQVWFQNCR-A 272
Query: 188 SHRRKDESASQSPTEAAPPAAA 209
H++ +P PP+ A
Sbjct: 273 RHKK------HTPQHPVPPSGA 288
>sp|P10180|CUT_DROME Homeobox protein cut OS=Drosophila melanogaster GN=ct PE=1 SV=1
Length = 2175
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQF-CNEVGVKRHVLKVWMHNNK 185
SK+QR F++EQK+ + R+ + + +V +F NE+G+ + W HN++
Sbjct: 1745 SKKQRVLFSEEQKEAL-----RLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHR 1797
>sp|Q9UPM6|LHX6_HUMAN LIM/homeobox protein Lhx6 OS=Homo sapiens GN=LHX6 PE=2 SV=2
Length = 363
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 129 SKRQRTKFTQEQKDKM-LEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNA 187
+KR RT FT EQ M +FA+ D L + + G+ R V++VW N + A
Sbjct: 219 AKRARTSFTAEQLQVMQAQFAQD-----NNPDAQTLQKLADMTGLSRRVIQVWFQNCR-A 272
Query: 188 SHRRKDESASQSPTEAAPPAAA 209
H++ +P PP+ A
Sbjct: 273 RHKK------HTPQHPVPPSGA 288
>sp|Q9C0A1|ZFHX2_HUMAN Zinc finger homeobox protein 2 OS=Homo sapiens GN=ZFHX2 PE=2 SV=3
Length = 2572
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDV--ALNQFCNEVGVKRHVLKVWMHNNK 185
+ KR RT EQ LE R W MQ + L+ EVG+K+ V++VW N +
Sbjct: 1856 RDKRLRTTILPEQ----LEILYR--WYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTR 1909
>sp|Q05640|HMEN_ARTSF Homeobox protein engrailed OS=Artemia franciscana PE=2 SV=1
Length = 349
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 126 TGKSKRQRTKFTQEQKDKML-EFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184
T KR RT FT EQ ++ EF E +R+ D+A E+G+ + +K+W NN
Sbjct: 246 TPDEKRPRTAFTAEQLSRLKHEFNENRYLTERRRQDLA-----RELGLHENQIKIWFQNN 300
Query: 185 K 185
+
Sbjct: 301 R 301
>sp|P50458|LHX2_HUMAN LIM/homeobox protein Lhx2 OS=Homo sapiens GN=LHX2 PE=2 SV=2
Length = 406
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 124 PATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVA-LNQFCNEVGVKRHVLKVWMH 182
P++ K+KR RT F Q M + + + D L Q + G+ + VL+VW
Sbjct: 261 PSSQKTKRMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 315
Query: 183 NNKNASHR---RKDESASQSPTEAA 204
N + R R++ + T+AA
Sbjct: 316 NARAKFRRNLLRQENTGVDKSTDAA 340
>sp|P09082|GSB_DROME Protein gooseberry OS=Drosophila melanogaster GN=gsb PE=2 SV=1
Length = 427
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNA 187
K +R RT F+ +Q D + ERI R Q D + G+ ++VW N +
Sbjct: 184 KQRRSRTTFSNDQIDAL----ERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRR-- 237
Query: 188 SHRRKDESASQSPTEA 203
+ RK + Q P+ A
Sbjct: 238 ARLRKQLNTQQVPSFA 253
>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens GN=ZFHX4 PE=1 SV=1
Length = 3567
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 120 GNVGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKV 179
GN G + KR RT T EQ + + E + R+ L+ EVG+K+ V++V
Sbjct: 2551 GNSGEDQHRDKRLRTTITPEQLEILYE-KYLLDSNPTRK---MLDHIAREVGLKKRVVQV 2606
Query: 180 WMHNNK 185
W N +
Sbjct: 2607 WFQNTR 2612
>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musculus GN=Zfhx4 PE=1 SV=1
Length = 3550
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 120 GNVGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKV 179
GN G + KR RT T EQ + + E + R+ L+ EVG+K+ V++V
Sbjct: 2533 GNSGEDQHRDKRLRTTITPEQLEILYE-KYLLDSNPTRK---MLDHIAREVGLKKRVVQV 2588
Query: 180 WMHNNK 185
W N +
Sbjct: 2589 WFQNTR 2594
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 120 GNVGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKV 179
GN G + KR RT T EQ + + E + R+ L+ EVG+K+ V++V
Sbjct: 2539 GNSGEDQHRDKRLRTTITPEQLEILYE-KYLLDSNPTRK---MLDHIAREVGLKKRVVQV 2594
Query: 180 WMHNNK 185
W N +
Sbjct: 2595 WFQNTR 2600
>sp|A8MFD5|MIAB_ALKOO (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Alkaliphilus oremlandii (strain OhILAs) GN=miaB PE=3
SV=1
Length = 471
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 16 QQEPNIINYKECMKNHAASIGGHANDGCCEFMPRADDSLTCAACGC 61
++E N+I Y C A + + N G + + + ++ L A CGC
Sbjct: 67 KEEANLIIYNTCCVRENAELKVYGNIGALKALKKKNEDLIIAVCGC 112
>sp|Q9Z0S2|LHX2_MOUSE LIM/homeobox protein Lhx2 OS=Mus musculus GN=Lhx2 PE=1 SV=1
Length = 406
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 124 PATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVA-LNQFCNEVGVKRHVLKVWMH 182
P++ K+KR RT F Q M + + + D L Q + G+ + VL+VW
Sbjct: 261 PSSQKTKRMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 315
Query: 183 NNKNASHRR 191
N + A RR
Sbjct: 316 NAR-AKFRR 323
>sp|O15499|GSC2_HUMAN Homeobox protein goosecoid-2 OS=Homo sapiens GN=GSC2 PE=2 SV=1
Length = 205
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 119 PGNVGPATGK-SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVL 177
PG VGP + + ++R RT F++EQ L+ E + + Q D + + ++ +
Sbjct: 115 PGAVGPGSQRRTRRHRTIFSEEQ----LQALEALFVQNQYPDVSTRERLAGRIRLREERV 170
Query: 178 KVWMHNNKNASHRRKDESAS 197
+VW N + +K SAS
Sbjct: 171 EVWFKNRRAKWRHQKRASAS 190
>sp|P36198|LHX2_RAT LIM/homeobox protein Lhx2 OS=Rattus norvegicus GN=Lhx2 PE=2 SV=1
Length = 426
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 124 PATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVA-LNQFCNEVGVKRHVLKVWMH 182
P++ K+KR RT F Q M + + + D L Q + G+ + VL+VW
Sbjct: 259 PSSQKTKRMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 313
Query: 183 NNKNASHRR 191
N + A RR
Sbjct: 314 NAR-AKFRR 321
>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2
Length = 3703
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 120 GNVGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKV 179
G G + KR RT T EQ LE + L+ +EVG+K+ V++V
Sbjct: 2632 GTGGEEPQRDKRLRTTITPEQ----LEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQV 2687
Query: 180 WMHNNKNASHRRKDESASQSPTEA 203
W N + + RK + + P +A
Sbjct: 2688 WFQNTR--ARERKGQFRAVGPAQA 2709
>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musculus GN=Zfhx3 PE=1 SV=1
Length = 3726
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 120 GNVGPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKV 179
G G + KR RT T EQ LE + L+ +EVG+K+ V++V
Sbjct: 2641 GTGGEEPQRDKRLRTTITPEQ----LEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQV 2696
Query: 180 WMHNNKNASHRRKDESASQSPTEA 203
W N + + RK + + P +A
Sbjct: 2697 WFQNTR--ARERKGQFRAVGPAQA 2718
>sp|A0JNI8|LHX9_BOVIN LIM/homeobox protein Lhx9 OS=Bos taurus GN=LHX9 PE=2 SV=2
Length = 397
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 124 PATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVA-LNQFCNEVGVKRHVLKVWMH 182
P + K+KR RT F Q M + + + D L Q + G+ + VL+VW
Sbjct: 262 PPSQKTKRMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 316
Query: 183 NNKNASHRR 191
N + A RR
Sbjct: 317 NAR-AKFRR 324
>sp|Q9WUH2|LHX9_MOUSE LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=1 SV=3
Length = 397
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 124 PATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVA-LNQFCNEVGVKRHVLKVWMH 182
P + K+KR RT F Q M + + + D L Q + G+ + VL+VW
Sbjct: 262 PPSQKTKRMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 316
Query: 183 NNKNASHRR 191
N + A RR
Sbjct: 317 NAR-AKFRR 324
>sp|Q9NQ69|LHX9_HUMAN LIM/homeobox protein Lhx9 OS=Homo sapiens GN=LHX9 PE=1 SV=3
Length = 397
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 124 PATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVA-LNQFCNEVGVKRHVLKVWMH 182
P + K+KR RT F Q M + + + D L Q + G+ + VL+VW
Sbjct: 262 PPSQKTKRMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 316
Query: 183 NNKNASHRR 191
N + A RR
Sbjct: 317 NAR-AKFRR 324
>sp|A6TR80|MIAB_ALKMQ (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Alkaliphilus metalliredigens (strain QYMF) GN=miaB
PE=3 SV=1
Length = 476
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 16 QQEPNIINYKECMKNHAASIGGHANDGCCEFMPRADDSLTCAACGC 61
+ E N+I Y C A + + N G + + + LT A CGC
Sbjct: 73 KNEANLIIYNTCCVRENAELKVYGNIGSLKNLKKEKHDLTIAVCGC 118
>sp|P34326|HM16_CAEEL Homeobox protein engrailed-like ceh-16 OS=Caenorhabditis elegans
GN=ceh-16 PE=2 SV=3
Length = 187
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 130 KRQRTKFTQEQKDKM-LEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185
KR RT FT +Q D++ EF E +R+ ++A +E+G+ +K+W N +
Sbjct: 88 KRPRTAFTGDQLDRLKTEFRESRYLTEKRRQELA-----HELGLNESQIKIWFQNKR 139
>sp|Q80W90|LHX9_RAT LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
Length = 388
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 124 PATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVA-LNQFCNEVGVKRHVLKVWMH 182
P + K+KR RT F Q M + + + D L Q + G+ + VL+VW
Sbjct: 253 PPSQKTKRMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 307
Query: 183 NNKNASHRR 191
N + A RR
Sbjct: 308 NAR-AKFRR 315
>sp|Q1LWV4|LHX9_DANRE LIM/homeobox protein Lhx9 OS=Danio rerio GN=lhx9 PE=2 SV=1
Length = 396
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 124 PATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVA-LNQFCNEVGVKRHVLKVWMH 182
P + K+KR RT F Q M + + + D L Q + G+ + VL+VW
Sbjct: 262 PPSQKTKRMRTSFKHHQLRTMKSY-----FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 316
Query: 183 NNKNASHRR 191
N + A RR
Sbjct: 317 NAR-AKFRR 324
>sp|P54366|GSC_DROME Homeobox protein goosecoid OS=Drosophila melanogaster GN=Gsc PE=2
SV=1
Length = 419
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 123 GPATGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMH 182
GP + +R RT FT+EQ LE E + D V Q +V +K ++VW
Sbjct: 280 GPPPKRKRRHRTIFTEEQ----LEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFK 335
Query: 183 NNKNASHRRKDE 194
N + ++K E
Sbjct: 336 NRRAKWRKQKRE 347
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,983,391
Number of Sequences: 539616
Number of extensions: 3408157
Number of successful extensions: 7920
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 7896
Number of HSP's gapped (non-prelim): 87
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)