Query 048824
Match_columns 209
No_of_seqs 164 out of 312
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 00:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh7_A ZF-HD homeobox family p 99.9 6.4E-24 2.2E-28 156.3 5.8 66 126-191 14-79 (80)
2 1wh5_A ZF-HD homeobox family p 99.9 2.8E-23 9.7E-28 152.3 6.0 66 126-191 14-79 (80)
3 2da4_A Hypothetical protein DK 99.8 3.7E-20 1.3E-24 133.9 0.4 68 126-193 5-72 (80)
4 2da3_A Alpha-fetoprotein enhan 99.7 7.1E-19 2.4E-23 126.2 3.3 64 126-193 14-77 (80)
5 1wi3_A DNA-binding protein SAT 99.7 2.8E-18 9.6E-23 126.0 4.1 63 126-191 4-66 (71)
6 2dmq_A LIM/homeobox protein LH 99.7 1.8E-18 6.1E-23 124.6 1.7 63 126-192 4-66 (80)
7 2cra_A Homeobox protein HOX-B1 99.7 9.3E-18 3.2E-22 118.6 4.8 64 126-193 4-67 (70)
8 2dmt_A Homeobox protein BARH-l 99.7 1.3E-17 4.3E-22 120.8 5.2 64 126-193 14-77 (80)
9 2dms_A Homeobox protein OTX2; 99.7 1.3E-17 4.6E-22 120.5 4.5 66 126-195 4-69 (80)
10 2djn_A Homeobox protein DLX-5; 99.7 1.3E-17 4.3E-22 117.9 3.9 64 126-193 4-67 (70)
11 2da2_A Alpha-fetoprotein enhan 99.7 1.6E-17 5.4E-22 116.9 3.9 65 126-194 4-68 (70)
12 2kt0_A Nanog, homeobox protein 99.7 4.3E-17 1.5E-21 118.3 6.0 64 126-193 19-82 (84)
13 2dmu_A Homeobox protein goosec 99.7 1.2E-17 4.1E-22 117.8 2.8 64 126-193 4-67 (70)
14 2da1_A Alpha-fetoprotein enhan 99.7 1.6E-17 5.6E-22 116.9 2.6 65 126-194 4-68 (70)
15 2vi6_A Homeobox protein nanog; 99.6 3.2E-17 1.1E-21 113.2 2.4 60 128-191 2-61 (62)
16 2e1o_A Homeobox protein PRH; D 99.6 2.9E-17 1E-21 116.0 2.2 64 126-193 4-67 (70)
17 1bw5_A ISL-1HD, insulin gene e 99.6 5.4E-17 1.8E-21 113.3 3.5 61 128-192 2-62 (66)
18 2hdd_A Protein (engrailed home 99.6 3.2E-17 1.1E-21 112.9 1.6 60 128-191 2-61 (61)
19 2l7z_A Homeobox protein HOX-A1 99.6 1.7E-16 5.7E-21 113.3 4.7 65 127-195 5-69 (73)
20 2cue_A Paired box protein PAX6 99.6 4.2E-17 1.4E-21 118.1 1.3 62 127-192 5-66 (80)
21 2dn0_A Zinc fingers and homeob 99.6 2.1E-16 7.1E-21 113.4 4.7 65 128-196 7-71 (76)
22 2m0c_A Homeobox protein arista 99.6 1.7E-16 5.6E-21 112.4 4.1 64 126-193 6-69 (75)
23 1b8i_A Ultrabithorax, protein 99.6 9.9E-17 3.4E-21 116.8 2.6 62 127-192 18-79 (81)
24 1nk2_P Homeobox protein VND; h 99.6 1.1E-16 3.8E-21 115.1 2.5 63 126-192 6-68 (77)
25 2h1k_A IPF-1, pancreatic and d 99.6 6.4E-17 2.2E-21 112.2 1.1 60 128-191 2-61 (63)
26 1ig7_A Homeotic protein MSX-1; 99.6 7.5E-17 2.5E-21 109.6 1.3 57 130-190 1-57 (58)
27 1ftt_A TTF-1 HD, thyroid trans 99.6 1.7E-16 5.7E-21 111.8 2.8 63 129-195 2-64 (68)
28 1ahd_P Antennapedia protein mu 99.6 6.7E-17 2.3E-21 114.0 0.8 63 129-195 2-64 (68)
29 1puf_A HOX-1.7, homeobox prote 99.6 1.8E-16 6.2E-21 114.0 3.0 62 126-191 10-71 (77)
30 1jgg_A Segmentation protein EV 99.6 1.2E-16 4E-21 109.7 1.3 58 130-191 2-59 (60)
31 3rkq_A Homeobox protein NKX-2. 99.6 1.8E-16 6.2E-21 106.8 1.8 57 129-189 2-58 (58)
32 2r5y_A Homeotic protein sex co 99.6 2E-16 6.8E-21 116.3 2.1 62 127-192 26-87 (88)
33 3a01_A Homeodomain-containing 99.6 2.5E-16 8.6E-21 117.6 2.4 64 126-193 14-77 (93)
34 2k40_A Homeobox expressed in E 99.6 3.1E-16 1.1E-20 109.7 2.0 62 129-194 1-62 (67)
35 1zq3_P PRD-4, homeotic bicoid 99.6 1.7E-16 5.9E-21 111.7 0.7 60 129-192 2-61 (68)
36 3nar_A ZHX1, zinc fingers and 99.6 4.2E-16 1.5E-20 116.6 2.7 63 126-192 22-84 (96)
37 2cuf_A FLJ21616 protein; homeo 99.6 2.3E-16 7.8E-21 117.7 1.1 65 126-194 4-83 (95)
38 1x2n_A Homeobox protein pknox1 99.6 6.1E-16 2.1E-20 109.8 3.2 67 127-194 5-71 (73)
39 1fjl_A Paired protein; DNA-bin 99.6 3.1E-16 1.1E-20 113.5 1.6 63 126-192 15-77 (81)
40 1du6_A PBX1, homeobox protein 99.6 8.8E-16 3E-20 106.3 3.8 63 128-191 2-64 (64)
41 2da5_A Zinc fingers and homeob 99.6 9.3E-16 3.2E-20 110.1 4.0 62 131-196 9-70 (75)
42 1akh_A Protein (mating-type pr 99.6 4.1E-16 1.4E-20 106.9 1.9 58 128-189 4-61 (61)
43 2dmn_A Homeobox protein TGIF2L 99.6 8.3E-16 2.8E-20 112.7 3.6 69 126-195 4-72 (83)
44 1yz8_P Pituitary homeobox 2; D 99.6 8.3E-17 2.9E-21 113.1 -1.9 62 128-193 2-63 (68)
45 2ly9_A Zinc fingers and homeob 99.6 1.6E-15 5.4E-20 107.7 4.6 63 128-194 5-67 (74)
46 2ecc_A Homeobox and leucine zi 99.5 1E-15 3.5E-20 112.9 1.9 58 131-192 5-62 (76)
47 3a02_A Homeobox protein arista 99.5 1.1E-15 3.6E-20 104.9 1.7 57 132-192 2-58 (60)
48 1b72_A Protein (homeobox prote 99.5 6.6E-16 2.2E-20 115.5 0.2 62 127-192 32-93 (97)
49 1e3o_C Octamer-binding transcr 99.5 1.7E-15 5.8E-20 122.6 2.5 61 127-191 99-159 (160)
50 2hi3_A Homeodomain-only protei 99.5 1.8E-15 6.1E-20 107.8 1.8 61 130-193 3-63 (73)
51 1puf_B PRE-B-cell leukemia tra 99.5 3E-15 1E-19 106.2 2.5 65 129-194 1-65 (73)
52 3d1n_I POU domain, class 6, tr 99.5 4.7E-15 1.6E-19 118.7 3.3 61 126-190 90-150 (151)
53 1au7_A Protein PIT-1, GHF-1; c 99.5 4.4E-15 1.5E-19 119.0 3.1 62 126-191 84-145 (146)
54 1uhs_A HOP, homeodomain only p 99.5 1.9E-15 6.6E-20 107.2 0.9 61 130-193 2-62 (72)
55 2xsd_C POU domain, class 3, tr 99.5 3E-15 1E-19 122.3 2.0 65 126-194 96-160 (164)
56 1b72_B Protein (PBX1); homeodo 99.5 2.5E-15 8.5E-20 109.6 1.1 63 129-192 1-63 (87)
57 1mnm_C Protein (MAT alpha-2 tr 99.5 5E-15 1.7E-19 108.6 2.5 63 127-190 25-87 (87)
58 3a03_A T-cell leukemia homeobo 99.5 2.5E-15 8.5E-20 102.2 0.1 54 134-191 2-55 (56)
59 1le8_B Mating-type protein alp 99.5 6.2E-15 2.1E-19 107.6 1.9 64 129-193 2-65 (83)
60 1k61_A Mating-type protein alp 99.5 7.5E-15 2.6E-19 100.5 2.1 59 132-191 1-59 (60)
61 2dmp_A Zinc fingers and homeob 99.5 5.2E-14 1.8E-18 104.4 6.1 58 133-194 17-74 (89)
62 2d5v_A Hepatocyte nuclear fact 99.5 1.8E-14 6.1E-19 116.1 3.2 66 126-195 94-159 (164)
63 1lfb_A Liver transcription fac 99.4 1.5E-14 5.1E-19 110.4 1.9 64 127-194 7-91 (99)
64 2da6_A Hepatocyte nuclear fact 99.4 1.1E-14 3.6E-19 112.9 0.7 63 126-192 3-86 (102)
65 3l1p_A POU domain, class 5, tr 99.4 1.7E-14 5.8E-19 116.4 -0.1 61 127-191 94-154 (155)
66 2cqx_A LAG1 longevity assuranc 99.4 4.6E-14 1.6E-18 101.4 1.1 59 130-192 9-68 (72)
67 2ecb_A Zinc fingers and homeob 99.4 7.9E-14 2.7E-18 105.0 2.2 54 135-192 17-70 (89)
68 2e19_A Transcription factor 8; 99.4 2E-13 6.9E-18 96.2 3.3 58 132-193 6-63 (64)
69 2l9r_A Homeobox protein NKX-3. 99.3 1.1E-12 3.8E-17 94.3 3.0 56 135-194 10-65 (69)
70 3nau_A Zinc fingers and homeob 99.3 3.1E-13 1.1E-17 97.7 0.1 50 137-190 12-61 (66)
71 1x2m_A LAG1 longevity assuranc 99.3 1E-12 3.4E-17 94.0 2.2 54 138-194 9-62 (64)
72 3k2a_A Homeobox protein MEIS2; 99.2 3E-12 1E-16 90.5 1.6 60 134-194 3-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.2 2.5E-12 8.7E-17 108.4 -0.2 62 126-191 112-194 (194)
74 2da7_A Zinc finger homeobox pr 99.1 9.5E-12 3.2E-16 91.4 1.6 47 138-188 14-60 (71)
75 2h8r_A Hepatocyte nuclear fact 99.1 4.3E-11 1.5E-15 103.4 2.8 60 126-189 139-219 (221)
76 1mh3_A Maltose binding-A1 home 99.0 1E-10 3.5E-15 101.1 0.8 57 129-189 365-421 (421)
77 2lk2_A Homeobox protein TGIF1; 98.7 1.6E-09 5.4E-14 82.1 0.3 59 133-192 9-67 (89)
78 2nzz_A Penetratin conjugated G 97.7 3E-06 1E-10 55.0 -1.4 19 175-193 1-19 (37)
79 2elh_A CG11849-PA, LD40883P; s 95.0 0.013 4.6E-07 41.8 2.7 49 126-183 13-61 (87)
80 1hlv_A CENP-B, major centromer 93.9 0.015 5.2E-07 43.2 0.9 48 132-186 4-51 (131)
81 2glo_A Brinker CG9653-PA; prot 93.3 0.035 1.2E-06 36.8 1.9 46 133-183 3-48 (59)
82 2ofy_A Putative XRE-family tra 91.3 0.064 2.2E-06 36.8 1.2 50 133-185 3-52 (86)
83 2jn6_A Protein CGL2762, transp 91.3 0.055 1.9E-06 38.6 0.9 45 133-185 3-48 (97)
84 1jko_C HIN recombinase, DNA-in 91.2 0.054 1.8E-06 33.2 0.7 43 135-186 5-47 (52)
85 1tc3_C Protein (TC3 transposas 90.6 0.035 1.2E-06 33.4 -0.6 43 134-185 4-46 (51)
86 2rn7_A IS629 ORFA; helix, all 89.8 0.13 4.6E-06 37.1 1.9 50 133-184 4-54 (108)
87 1iuf_A Centromere ABP1 protein 87.5 0.33 1.1E-05 37.6 2.7 52 130-185 6-61 (144)
88 1je8_A Nitrate/nitrite respons 86.6 0.09 3.1E-06 37.0 -0.8 51 131-191 17-67 (82)
89 3c57_A Two component transcrip 84.6 0.15 5.1E-06 36.8 -0.5 49 134-192 26-74 (95)
90 1u78_A TC3 transposase, transp 84.3 0.42 1.4E-05 34.9 1.8 44 134-186 5-48 (141)
91 2qko_A Possible transcriptiona 84.2 0.22 7.4E-06 38.2 0.2 46 139-185 28-73 (215)
92 3bdn_A Lambda repressor; repre 84.1 0.22 7.4E-06 40.1 0.2 51 134-185 5-55 (236)
93 2ao9_A Phage protein; structur 84.0 0.33 1.1E-05 39.6 1.3 50 133-185 21-73 (155)
94 3gzi_A Transcriptional regulat 83.8 0.2 6.9E-06 37.9 -0.1 47 138-185 16-62 (218)
95 3cwr_A Transcriptional regulat 83.8 0.17 5.8E-06 37.7 -0.6 47 138-185 16-62 (208)
96 2k27_A Paired box protein PAX- 83.1 0.9 3.1E-05 34.7 3.3 44 134-186 24-67 (159)
97 2p7v_B Sigma-70, RNA polymeras 82.3 0.2 6.7E-06 33.6 -0.7 53 135-192 5-57 (68)
98 1pdn_C Protein (PRD paired); p 82.2 0.51 1.7E-05 33.5 1.5 43 134-185 16-58 (128)
99 2rnj_A Response regulator prot 82.0 0.13 4.4E-06 36.5 -1.7 50 132-191 26-75 (91)
100 1p4w_A RCSB; solution structur 81.7 0.23 8E-06 36.7 -0.5 48 133-190 32-79 (99)
101 1fse_A GERE; helix-turn-helix 81.4 0.17 5.9E-06 33.5 -1.2 49 132-190 8-56 (74)
102 3bni_A Putative TETR-family tr 81.3 0.2 6.9E-06 39.2 -1.0 47 138-185 42-88 (229)
103 1x3u_A Transcriptional regulat 80.9 0.16 5.6E-06 34.3 -1.5 47 135-191 16-62 (79)
104 3kz9_A SMCR; transcriptional r 80.3 0.38 1.3E-05 35.7 0.3 46 139-185 17-62 (206)
105 3kz3_A Repressor protein CI; f 80.2 0.18 6E-06 34.4 -1.5 49 136-185 2-50 (80)
106 2np3_A Putative TETR-family re 80.0 0.46 1.6E-05 36.2 0.7 47 138-185 29-75 (212)
107 3hug_A RNA polymerase sigma fa 79.8 0.091 3.1E-06 37.3 -3.2 46 135-190 37-83 (92)
108 1k78_A Paired box protein PAX5 79.6 0.68 2.3E-05 34.8 1.5 43 134-185 31-73 (149)
109 3ej9_B Beta-subunit of trans-3 79.6 2.3 7.7E-05 31.0 4.2 36 137-186 12-47 (70)
110 2o8x_A Probable RNA polymerase 79.0 0.12 4.1E-06 33.9 -2.6 48 135-192 15-63 (70)
111 3dcf_A Transcriptional regulat 78.9 0.31 1.1E-05 36.6 -0.6 46 139-185 31-76 (218)
112 2lfw_A PHYR sigma-like domain; 77.5 0.15 5.1E-06 39.1 -2.8 53 134-195 92-144 (157)
113 2ys9_A Homeobox and leucine zi 77.3 0.7 2.4E-05 33.6 0.9 38 141-182 18-55 (70)
114 3bru_A Regulatory protein, TET 77.0 0.36 1.2E-05 36.7 -0.8 46 139-185 30-75 (222)
115 3him_A Probable transcriptiona 76.8 0.62 2.1E-05 34.7 0.5 28 158-185 34-61 (211)
116 3clo_A Transcriptional regulat 76.4 0.5 1.7E-05 39.2 -0.1 49 133-191 195-243 (258)
117 3nrg_A TETR family transcripti 75.2 0.64 2.2E-05 35.0 0.2 48 137-185 11-58 (217)
118 3on2_A Probable transcriptiona 74.2 1.3 4.5E-05 32.5 1.7 28 158-185 30-57 (199)
119 3mvp_A TETR/ACRR transcription 74.2 0.42 1.4E-05 35.9 -1.0 47 137-184 24-70 (217)
120 3ccy_A Putative TETR-family tr 73.9 0.82 2.8E-05 34.6 0.5 27 158-184 32-58 (203)
121 2r1j_L Repressor protein C2; p 73.1 1 3.5E-05 28.7 0.8 36 142-185 8-43 (68)
122 3q0w_A HTH-type transcriptiona 72.7 0.63 2.1E-05 36.4 -0.4 47 138-185 43-89 (236)
123 2fq4_A Transcriptional regulat 72.6 0.67 2.3E-05 35.0 -0.3 28 158-185 30-57 (192)
124 2hku_A A putative transcriptio 72.5 0.39 1.3E-05 36.7 -1.6 44 140-185 21-64 (215)
125 1lmb_3 Protein (lambda repress 72.4 1.7 5.8E-05 29.8 1.8 24 162-185 32-55 (92)
126 3m20_A 4-oxalocrotonate tautom 72.0 5.9 0.0002 26.1 4.4 35 136-184 10-44 (62)
127 1tty_A Sigma-A, RNA polymerase 71.7 0.35 1.2E-05 34.1 -1.9 53 135-192 18-70 (87)
128 1zug_A Phage 434 CRO protein; 71.6 1.1 3.8E-05 28.8 0.7 37 142-186 6-42 (71)
129 3qqa_A CMER; alpha-helical, he 71.2 0.76 2.6E-05 34.5 -0.2 47 138-185 18-64 (216)
130 3ulq_B Transcriptional regulat 71.0 0.69 2.4E-05 33.4 -0.5 48 132-189 26-73 (90)
131 1l0o_C Sigma factor; bergerat 70.7 0.87 3E-05 35.4 0.0 46 135-189 198-243 (243)
132 3mzy_A RNA polymerase sigma-H 70.4 0.21 7.1E-06 36.7 -3.5 46 135-190 109-154 (164)
133 3f1b_A TETR-like transcription 70.0 0.64 2.2E-05 34.5 -0.9 28 158-185 32-59 (203)
134 1u78_A TC3 transposase, transp 69.3 2.3 7.8E-05 30.9 2.1 45 134-186 59-105 (141)
135 2oer_A Probable transcriptiona 68.7 0.76 2.6E-05 35.4 -0.7 47 138-185 23-69 (214)
136 3g1o_A Transcriptional regulat 68.5 0.9 3.1E-05 35.9 -0.3 47 138-185 42-88 (255)
137 1adr_A P22 C2 repressor; trans 68.5 1.5 5E-05 28.6 0.8 22 163-184 21-42 (76)
138 3m21_A Probable tautomerase HP 68.5 7.8 0.00027 25.7 4.5 36 135-184 13-48 (67)
139 1r69_A Repressor protein CI; g 68.3 1.5 5.1E-05 28.0 0.8 37 142-186 4-40 (69)
140 2iai_A Putative transcriptiona 67.5 1.2 4.1E-05 34.7 0.2 40 141-185 36-75 (230)
141 2q0o_A Probable transcriptiona 67.2 0.81 2.8E-05 37.2 -0.9 48 133-190 173-220 (236)
142 3mnl_A KSTR, transcriptional r 67.1 0.31 1.1E-05 36.4 -3.2 47 138-185 19-65 (203)
143 1ku3_A Sigma factor SIGA; heli 66.9 0.35 1.2E-05 32.8 -2.7 50 135-189 10-59 (73)
144 3b7h_A Prophage LP1 protein 11 65.9 1.8 6E-05 28.5 0.7 36 142-185 10-45 (78)
145 1y7y_A C.AHDI; helix-turn-heli 65.7 1.8 6.3E-05 28.0 0.8 23 162-184 28-50 (74)
146 1s7o_A Hypothetical UPF0122 pr 65.7 0.25 8.7E-06 37.3 -3.9 47 134-190 21-68 (113)
147 2k9q_A Uncharacterized protein 65.7 1.8 6.1E-05 28.9 0.8 20 164-183 19-38 (77)
148 3kkd_A Transcriptional regulat 65.5 1.3 4.6E-05 34.3 0.1 28 158-185 53-80 (237)
149 3v6g_A Probable transcriptiona 65.2 0.66 2.3E-05 36.2 -1.8 27 158-184 32-58 (208)
150 2b5a_A C.BCLI; helix-turn-heli 64.6 1.9 6.6E-05 28.2 0.7 24 162-185 25-48 (77)
151 4dyq_A Gene 1 protein; GP1, oc 64.3 0.38 1.3E-05 37.3 -3.2 44 132-184 9-53 (140)
152 2iu5_A DHAS, YCEG, HTH-type dh 64.2 2 6.7E-05 32.3 0.8 28 158-185 31-58 (195)
153 3lwj_A Putative TETR-family tr 64.1 0.93 3.2E-05 33.8 -1.0 28 158-185 30-57 (202)
154 1xsv_A Hypothetical UPF0122 pr 63.6 0.38 1.3E-05 36.1 -3.3 48 134-190 24-71 (113)
155 2qtq_A Transcriptional regulat 63.4 0.93 3.2E-05 33.8 -1.1 28 158-185 34-61 (213)
156 1gyx_A YDCE, B1461, hypothetic 63.3 9.8 0.00034 26.0 4.3 37 135-185 11-47 (76)
157 1pb6_A Hypothetical transcript 63.1 0.96 3.3E-05 33.9 -1.1 47 138-185 17-63 (212)
158 2zb9_A Putative transcriptiona 63.0 0.93 3.2E-05 34.5 -1.2 44 141-185 25-68 (214)
159 3g7r_A Putative transcriptiona 62.9 1.4 4.7E-05 34.1 -0.3 47 138-185 34-80 (221)
160 2hxo_A Putative TETR-family tr 62.6 3.4 0.00012 33.3 2.0 52 129-185 9-61 (237)
161 3rd3_A Probable transcriptiona 62.4 0.97 3.3E-05 33.3 -1.2 28 158-185 28-55 (197)
162 1l3l_A Transcriptional activat 62.3 0.96 3.3E-05 36.7 -1.3 48 132-189 170-217 (234)
163 3abf_A 4-oxalocrotonate tautom 62.1 13 0.00044 23.8 4.5 36 136-185 12-47 (64)
164 2zcx_A SCO7815, TETR-family tr 61.7 1.5 5.2E-05 34.7 -0.2 28 158-185 41-68 (231)
165 2qib_A TETR-family transcripti 61.7 1.1 3.9E-05 34.9 -1.0 28 158-185 31-58 (231)
166 2ef8_A C.ECOT38IS, putative tr 61.4 2.5 8.4E-05 28.1 0.8 36 142-185 13-48 (84)
167 3knw_A Putative transcriptiona 61.4 1.4 4.9E-05 32.9 -0.4 47 138-185 13-59 (212)
168 2x48_A CAG38821; archeal virus 61.3 2.6 9.1E-05 26.6 0.9 39 135-182 13-53 (55)
169 2rae_A Transcriptional regulat 61.1 1.2 4E-05 33.5 -1.0 29 158-186 35-63 (207)
170 3kkc_A TETR family transcripti 60.5 3.2 0.00011 30.2 1.4 47 138-185 11-57 (177)
171 3lsj_A DEST; transcriptional r 60.4 1.9 6.4E-05 32.8 0.1 47 138-185 10-57 (220)
172 2xi8_A Putative transcription 60.0 2.3 7.7E-05 26.8 0.4 20 164-183 18-37 (66)
173 3bs3_A Putative DNA-binding pr 59.8 1.3 4.3E-05 29.0 -0.9 17 158-174 50-66 (76)
174 2guh_A Putative TETR-family tr 59.8 1.2 4.3E-05 34.7 -1.0 28 158-185 57-84 (214)
175 3he0_A Transcriptional regulat 58.8 2.2 7.5E-05 31.4 0.2 40 141-185 17-56 (196)
176 2kpj_A SOS-response transcript 58.5 1.9 6.5E-05 30.0 -0.2 18 158-175 49-66 (94)
177 2ict_A Antitoxin HIGA; helix-t 58.5 2.6 9.1E-05 29.1 0.6 17 158-174 48-64 (94)
178 2jpc_A SSRB; DNA binding prote 58.3 0.65 2.2E-05 29.9 -2.5 30 162-191 15-44 (61)
179 3omt_A Uncharacterized protein 58.1 1.4 4.9E-05 29.0 -0.8 18 158-175 48-65 (73)
180 2oi8_A Putative regulatory pro 58.1 1.8 6.1E-05 33.9 -0.4 47 138-185 15-61 (216)
181 3aqt_A Bacterial regulatory pr 57.7 1.5 5.1E-05 34.7 -0.9 28 158-185 64-91 (245)
182 3t76_A VANU, transcriptional r 57.5 3 0.0001 30.0 0.7 18 158-175 63-80 (88)
183 2a6c_A Helix-turn-helix motif; 57.4 2.6 8.8E-05 28.9 0.4 20 164-183 35-54 (83)
184 2q24_A Putative TETR family tr 57.3 1.3 4.4E-05 33.2 -1.3 25 161-185 35-59 (194)
185 3loc_A HTH-type transcriptiona 56.8 0.57 1.9E-05 35.0 -3.4 46 138-184 17-62 (212)
186 3s8q_A R-M controller protein; 56.6 3.3 0.00011 27.7 0.8 23 162-184 26-48 (82)
187 3f6w_A XRE-family like protein 56.5 3.3 0.00011 27.7 0.8 22 163-184 30-51 (83)
188 1or7_A Sigma-24, RNA polymeras 56.2 0.54 1.8E-05 35.9 -3.7 30 162-191 158-187 (194)
189 3mb2_B 4-oxalocrotonate tautom 55.9 16 0.00056 26.6 4.4 40 130-186 10-49 (72)
190 3qbm_A TETR transcriptional re 55.9 2.1 7.2E-05 31.5 -0.3 28 158-185 25-52 (199)
191 3mb2_A 4-oxalocrotonate tautom 55.5 19 0.00064 24.2 4.5 35 136-184 12-46 (72)
192 2v57_A TETR family transcripti 55.4 2.2 7.6E-05 31.5 -0.3 44 139-185 14-57 (190)
193 1otf_A 4-oxalocrotonate tautom 55.3 17 0.00059 23.0 4.1 35 137-185 12-46 (62)
194 3lhq_A Acrab operon repressor 55.1 2.1 7.2E-05 31.8 -0.4 28 158-185 32-59 (220)
195 2id3_A Putative transcriptiona 55.0 0.97 3.3E-05 35.2 -2.4 28 158-185 58-85 (225)
196 2l49_A C protein; P2 bacteriop 54.8 3.9 0.00013 28.3 0.9 12 158-169 44-55 (99)
197 1j9i_A GPNU1 DBD;, terminase s 54.2 2.1 7.1E-05 28.9 -0.5 23 163-185 5-27 (68)
198 3vib_A MTRR; helix-turn-helix 54.1 2.3 7.7E-05 32.3 -0.4 28 158-185 28-55 (210)
199 3b81_A Transcriptional regulat 53.8 2.1 7E-05 31.8 -0.7 47 138-185 10-56 (203)
200 3vp5_A Transcriptional regulat 53.4 1.8 6.1E-05 32.8 -1.1 47 137-184 10-56 (189)
201 2opa_A Probable tautomerase YW 53.3 20 0.00067 22.7 4.2 35 137-185 12-46 (61)
202 3ppb_A Putative TETR family tr 52.9 1.7 5.7E-05 31.9 -1.3 28 158-185 27-54 (195)
203 3nxc_A HTH-type protein SLMA; 52.8 2.7 9.3E-05 31.3 -0.1 28 158-185 43-70 (212)
204 3egq_A TETR family transcripti 52.7 2.7 9.3E-05 30.6 -0.2 45 140-185 5-49 (170)
205 3f0c_A TETR-molecule A, transc 52.5 1.3 4.3E-05 33.4 -2.1 28 158-185 29-56 (216)
206 2wiu_B HTH-type transcriptiona 52.4 4 0.00014 27.4 0.7 20 164-183 29-48 (88)
207 2dg8_A Putative TETR-family tr 52.3 1.9 6.5E-05 32.4 -1.1 28 158-185 27-54 (193)
208 3fmy_A HTH-type transcriptiona 52.1 5.8 0.0002 26.6 1.5 41 134-185 9-49 (73)
209 2np5_A Transcriptional regulat 51.9 2.4 8.2E-05 32.2 -0.6 28 158-185 27-54 (203)
210 3geu_A Intercellular adhesion 51.9 1.5 5E-05 32.5 -1.8 46 139-185 3-48 (189)
211 3s5r_A Transcriptional regulat 51.6 1.2 4E-05 33.5 -2.4 28 158-185 28-55 (216)
212 3qkx_A Uncharacterized HTH-typ 51.6 3 0.0001 30.3 -0.1 45 140-185 9-53 (188)
213 2o7t_A Transcriptional regulat 51.6 2.5 8.5E-05 31.8 -0.6 28 158-185 26-53 (199)
214 2fnf_X Putative RAS effector N 51.6 6.5 0.00022 27.6 1.7 29 38-68 36-66 (72)
215 2ras_A Transcriptional regulat 51.6 2.4 8.3E-05 31.9 -0.6 28 158-185 29-56 (212)
216 3i5g_B Myosin regulatory light 51.3 35 0.0012 25.5 5.9 43 132-174 6-49 (153)
217 1rp3_A RNA polymerase sigma fa 51.3 0.87 3E-05 35.6 -3.2 47 135-190 187-233 (239)
218 3col_A Putative transcription 51.2 1.5 5.1E-05 32.1 -1.8 28 158-185 28-55 (196)
219 3qp6_A CVIR transcriptional re 51.1 2.8 9.7E-05 35.2 -0.3 49 132-190 194-242 (265)
220 2k27_A Paired box protein PAX- 51.1 20 0.00067 27.1 4.5 54 132-190 80-141 (159)
221 1rfh_A RAS association (ralgds 51.0 4.1 0.00014 27.4 0.5 25 38-64 23-49 (59)
222 3vk0_A NHTF, transcriptional r 50.7 4.8 0.00017 29.1 0.9 18 158-175 61-78 (114)
223 3c3w_A Two component transcrip 50.7 3.3 0.00011 32.5 -0.0 48 134-191 148-195 (225)
224 3ej9_A Alpha-subunit of trans- 50.7 21 0.00073 24.5 4.3 35 136-184 12-46 (76)
225 2kvr_A Ubiquitin carboxyl-term 50.6 13 0.00046 28.8 3.5 34 153-186 60-95 (130)
226 2xdn_A HTH-type transcriptiona 50.5 3.6 0.00012 31.1 0.2 28 158-185 29-56 (210)
227 3c07_A Putative TETR-family tr 50.5 2.2 7.5E-05 34.9 -1.1 46 139-185 41-86 (273)
228 1sgm_A Putative HTH-type trans 50.3 3.4 0.00012 30.1 0.0 26 158-183 24-49 (191)
229 2wui_A MEXZ, transcriptional r 50.1 3.1 0.0001 31.7 -0.3 45 140-185 12-56 (210)
230 1uiz_A MIF, macrophage migrati 49.4 25 0.00085 25.4 4.6 36 136-185 68-103 (115)
231 3c2b_A Transcriptional regulat 49.3 1.8 6.2E-05 32.8 -1.7 28 158-185 33-60 (221)
232 1hfo_A Migration inhibitory fa 48.8 26 0.00088 25.1 4.6 36 136-185 67-102 (113)
233 3ry0_A Putative tautomerase; o 48.8 26 0.00088 22.9 4.3 35 136-184 11-45 (65)
234 3op9_A PLI0006 protein; struct 48.7 4.8 0.00016 28.8 0.6 19 157-175 48-66 (114)
235 2rek_A Putative TETR-family tr 48.2 1.6 5.4E-05 32.7 -2.1 24 161-184 36-59 (199)
236 3e7q_A Transcriptional regulat 47.9 0.42 1.4E-05 35.7 -5.4 46 139-185 14-59 (215)
237 3qq6_A HTH-type transcriptiona 47.9 5.5 0.00019 27.0 0.8 44 129-174 17-67 (78)
238 3anp_C Transcriptional repress 47.8 3.4 0.00012 31.1 -0.3 28 158-185 27-54 (204)
239 1ity_A TRF1; helix-turn-helix, 47.8 22 0.00075 24.1 3.9 25 128-152 5-29 (69)
240 2hyj_A Putative TETR-family tr 47.7 2.4 8.2E-05 32.3 -1.2 45 139-184 12-56 (200)
241 1k78_A Paired box protein PAX5 47.7 8.2 0.00028 28.8 1.8 47 132-186 87-144 (149)
242 2g7s_A Transcriptional regulat 47.5 2.6 8.8E-05 30.8 -1.0 28 158-185 26-53 (194)
243 2os5_A Acemif; macrophage migr 47.4 28 0.00095 25.4 4.7 36 136-185 68-103 (119)
244 2pz9_A Putative regulatory pro 47.2 0.82 2.8E-05 35.5 -4.0 27 159-185 49-75 (226)
245 3fiw_A Putative TETR-family tr 47.2 5.6 0.00019 31.3 0.9 52 129-185 18-70 (211)
246 2hyt_A TETR-family transcripti 47.1 2.3 8E-05 32.1 -1.4 27 158-184 30-56 (197)
247 1x57_A Endothelial differentia 47.0 6.2 0.00021 27.0 1.0 47 131-177 22-72 (91)
248 3cdl_A Transcriptional regulat 46.8 3.8 0.00013 31.0 -0.2 28 158-185 27-54 (203)
249 2ewt_A BLDD, putative DNA-bind 46.6 5.3 0.00018 25.7 0.5 20 164-183 25-46 (71)
250 3pas_A TETR family transcripti 46.5 1.7 5.7E-05 31.8 -2.2 28 158-185 26-53 (195)
251 4aci_A HTH-type transcriptiona 46.0 1.2 4E-05 33.1 -3.2 28 158-185 32-59 (191)
252 1qgp_A Protein (double strande 45.9 3.6 0.00012 28.9 -0.4 46 135-184 10-55 (77)
253 3frq_A Repressor protein MPHR( 45.8 1.7 5.9E-05 32.4 -2.3 28 158-185 26-53 (195)
254 2of7_A Putative TETR-family tr 45.3 2.1 7E-05 34.3 -2.0 48 138-186 47-94 (260)
255 1a04_A Nitrate/nitrite respons 45.2 3.4 0.00012 31.7 -0.7 47 134-190 153-199 (215)
256 3szt_A QCSR, quorum-sensing co 45.0 3.9 0.00013 33.5 -0.4 48 133-190 173-220 (237)
257 4hku_A LMO2814 protein, TETR t 44.8 4.1 0.00014 30.4 -0.3 28 158-185 25-52 (178)
258 3klo_A Transcriptional regulat 44.5 4.9 0.00017 31.3 0.1 47 134-190 158-204 (225)
259 1zk8_A Transcriptional regulat 44.4 2.7 9.3E-05 30.9 -1.3 28 158-185 26-53 (183)
260 3dew_A Transcriptional regulat 44.3 1.9 6.4E-05 31.7 -2.2 28 158-185 26-53 (206)
261 2fd5_A Transcriptional regulat 44.2 6.1 0.00021 28.9 0.6 28 158-185 25-52 (180)
262 2dg7_A Putative transcriptiona 44.1 3.4 0.00011 30.8 -0.9 31 158-188 25-55 (195)
263 3trb_A Virulence-associated pr 44.0 5.8 0.0002 29.1 0.5 17 158-174 54-70 (104)
264 3ivp_A Putative transposon-rel 43.9 6.4 0.00022 28.7 0.7 18 158-175 52-69 (126)
265 2yve_A Transcriptional regulat 43.7 3.9 0.00013 30.6 -0.5 27 158-184 22-48 (185)
266 2rgt_A Fusion of LIM/homeobox 43.6 0.2 6.9E-06 39.4 -8.1 24 127-150 134-157 (169)
267 2ibd_A Possible transcriptiona 43.5 3.8 0.00013 31.0 -0.7 28 158-185 32-59 (204)
268 1b0n_A Protein (SINR protein); 43.5 6.8 0.00023 27.4 0.7 17 158-174 42-58 (111)
269 3npi_A TETR family regulatory 43.1 1 3.4E-05 35.6 -4.1 28 158-185 36-63 (251)
270 3kyd_D Small ubiquitin-related 42.9 17 0.00059 28.0 3.0 28 161-188 65-92 (115)
271 3g5g_A Regulatory protein; tra 42.9 7.2 0.00025 27.9 0.8 21 164-184 45-65 (99)
272 2w53_A Repressor, SMet; antibi 42.7 3.7 0.00013 31.3 -0.9 28 158-185 29-56 (219)
273 3vpr_A Transcriptional regulat 42.6 3.2 0.00011 30.8 -1.1 28 158-185 21-48 (190)
274 3hta_A EBRA repressor; TETR fa 42.2 5.6 0.00019 30.7 0.2 28 158-185 46-73 (217)
275 4ich_A Transcriptional regulat 42.1 4 0.00014 33.7 -0.8 48 137-185 118-165 (311)
276 2ppx_A AGR_C_3184P, uncharacte 41.7 5.6 0.00019 28.0 0.0 22 163-184 46-67 (99)
277 2xcz_A Possible ATLS1-like lig 41.6 28 0.00095 25.1 3.9 36 136-185 68-103 (115)
278 2qwt_A Transcriptional regulat 41.3 5.1 0.00017 30.2 -0.2 26 160-185 32-57 (196)
279 3ljl_A Transcriptional regulat 41.2 2.4 8.1E-05 31.3 -2.1 28 158-185 32-59 (156)
280 2g7l_A TETR-family transcripti 41.1 2.3 7.8E-05 34.6 -2.4 51 130-185 13-64 (243)
281 2eh3_A Transcriptional regulat 40.8 3.7 0.00013 30.3 -1.0 27 158-184 20-46 (179)
282 3eup_A Transcriptional regulat 40.8 2.8 9.5E-05 31.0 -1.8 28 158-185 29-56 (204)
283 3uj3_X DNA-invertase; helix-tu 40.8 5.8 0.0002 31.3 0.0 44 135-187 142-185 (193)
284 3o9x_A Uncharacterized HTH-typ 40.5 10 0.00035 27.9 1.3 40 135-185 70-109 (133)
285 3sjm_A Telomeric repeat-bindin 40.3 24 0.0008 24.1 3.1 23 130-152 8-30 (64)
286 1vi0_A Transcriptional regulat 40.3 2.6 9E-05 32.2 -2.0 27 158-184 26-52 (206)
287 1rkt_A Protein YFIR; transcrip 40.3 5.1 0.00017 30.3 -0.4 28 158-185 30-57 (205)
288 3eus_A DNA-binding protein; st 40.3 8.2 0.00028 26.5 0.7 22 163-184 30-51 (86)
289 2roh_A RTBP1, telomere binding 40.1 73 0.0025 24.8 6.3 25 128-152 26-50 (122)
290 3f52_A CLP gene regulator (CLG 39.9 8.1 0.00028 27.6 0.7 20 164-183 45-64 (117)
291 1mww_A Hypothetical protein HI 39.8 38 0.0013 24.9 4.4 35 137-185 71-105 (128)
292 1v74_A Colicin D; colicin D - 39.5 23 0.00079 27.6 3.2 38 132-169 6-43 (107)
293 3bjb_A Probable transcriptiona 39.3 3.6 0.00012 31.5 -1.4 28 158-185 40-67 (207)
294 1hlv_A CENP-B, major centromer 39.1 82 0.0028 22.6 6.1 58 128-185 65-127 (131)
295 3jsj_A Putative TETR-family tr 38.9 4.9 0.00017 29.7 -0.7 27 158-185 27-53 (190)
296 2i10_A Putative TETR transcrip 38.6 8.3 0.00028 29.3 0.6 28 158-185 29-56 (202)
297 3cec_A Putative antidote prote 38.6 8.8 0.0003 27.0 0.7 17 158-174 58-74 (104)
298 2x4k_A 4-oxalocrotonate tautom 38.3 47 0.0016 20.6 4.2 35 136-184 14-48 (63)
299 3lfp_A CSP231I C protein; tran 38.3 8.6 0.00029 26.8 0.6 19 157-175 44-62 (98)
300 2aje_A Telomere repeat-binding 38.3 28 0.00097 26.4 3.5 26 127-152 7-32 (105)
301 3bd1_A CRO protein; transcript 38.2 4.7 0.00016 27.1 -0.8 24 162-185 13-36 (79)
302 2f07_A YVDT; helix-turn-helix, 38.2 4.9 0.00017 30.3 -0.8 28 158-185 28-55 (197)
303 3on4_A Transcriptional regulat 37.7 3.6 0.00012 30.0 -1.5 28 158-185 28-55 (191)
304 1g3n_C V-cyclin; cyclin-depend 37.6 58 0.002 26.8 5.7 42 135-176 125-168 (257)
305 3rh2_A Hypothetical TETR-like 37.6 3.7 0.00013 31.0 -1.5 28 158-185 21-48 (212)
306 3j20_Y 30S ribosomal protein S 37.5 7.7 0.00026 25.8 0.2 18 43-60 25-44 (50)
307 1k81_A EIF-2-beta, probable tr 37.4 6.8 0.00023 24.5 -0.1 12 53-64 21-32 (36)
308 2hxi_A Putative transcriptiona 37.4 3.5 0.00012 33.4 -1.8 28 158-185 47-74 (241)
309 1wm3_A Ubiquitin-like protein 37.2 26 0.00089 23.7 2.9 28 160-187 25-52 (72)
310 2gen_A Probable transcriptiona 37.1 4.8 0.00016 30.4 -1.0 28 158-185 25-52 (197)
311 3bqz_B HTH-type transcriptiona 37.1 6.7 0.00023 28.7 -0.2 39 141-184 8-46 (194)
312 1dj7_A Ferredoxin thioredoxin 36.6 52 0.0018 25.7 4.9 32 137-169 7-42 (117)
313 2d6y_A Putative TETR family re 36.6 4.3 0.00015 30.9 -1.3 28 158-185 26-53 (202)
314 1yio_A Response regulatory pro 36.4 5.7 0.00019 30.1 -0.7 46 135-190 142-187 (208)
315 1t33_A Putative transcriptiona 36.4 3.7 0.00013 31.1 -1.7 25 161-185 32-56 (224)
316 1neq_A DNA-binding protein NER 36.4 9.8 0.00033 26.4 0.6 21 162-182 24-44 (74)
317 3b64_A Macrophage migration in 36.1 40 0.0014 24.2 3.9 35 137-185 69-103 (112)
318 2pag_A Hypothetical protein; n 36.0 26 0.0009 26.9 3.1 35 139-173 3-37 (135)
319 2ba3_A NIKA; dimer, bacterial 36.0 20 0.00068 22.8 2.0 24 129-152 15-38 (51)
320 2aal_A Malonate semialdehyde d 35.4 53 0.0018 24.3 4.7 36 136-185 76-111 (131)
321 3bhq_A Transcriptional regulat 35.3 6.1 0.00021 29.9 -0.6 27 158-184 30-56 (211)
322 2w96_A G1/S-specific cyclin-D1 35.2 54 0.0018 27.2 5.1 42 135-176 131-174 (271)
323 3mf7_A CIS-3-chloroacrylic aci 34.9 37 0.0013 26.6 3.9 37 134-184 10-46 (149)
324 1y9q_A Transcriptional regulat 34.8 11 0.00037 29.2 0.7 20 157-176 50-69 (192)
325 2jj7_A Hemolysin II regulatory 34.8 3.2 0.00011 30.6 -2.3 28 158-185 25-52 (186)
326 1t8t_A Heparan sulfate D-gluco 34.7 68 0.0023 25.8 5.5 34 130-174 234-267 (271)
327 1p2f_A Response regulator; DRR 34.4 5.6 0.00019 30.6 -1.0 52 134-191 144-198 (220)
328 2wkb_A Macrophage migration in 34.4 28 0.00095 25.8 2.9 35 137-185 69-103 (125)
329 3a4r_A Nfatc2-interacting prot 34.1 33 0.0011 23.8 3.1 27 161-187 33-59 (79)
330 1faq_A RAF-1; transferase, ser 34.1 16 0.00053 23.3 1.3 27 39-68 16-44 (52)
331 1nee_A EIF-2-beta, probable tr 33.9 11 0.00036 30.1 0.5 13 53-65 123-135 (138)
332 3crj_A Transcription regulator 33.8 7.4 0.00025 29.4 -0.4 28 158-185 32-59 (199)
333 3nnr_A Transcriptional regulat 33.8 3.4 0.00012 31.7 -2.3 28 158-185 23-50 (228)
334 1ui5_A A-factor receptor homol 33.6 5.9 0.0002 30.5 -1.0 28 158-185 27-54 (215)
335 2nx4_A Transcriptional regulat 33.5 7.1 0.00024 29.3 -0.5 28 158-185 28-55 (194)
336 2q1z_A RPOE, ECF SIGE; ECF sig 33.4 0.35 1.2E-05 36.8 -8.0 45 136-190 136-181 (184)
337 3cjd_A Transcriptional regulat 33.2 6.1 0.00021 30.0 -0.9 27 158-184 30-56 (198)
338 2gwr_A DNA-binding response re 33.2 9.6 0.00033 29.9 0.2 52 134-191 152-208 (238)
339 3t72_q RNA polymerase sigma fa 33.1 4.5 0.00016 29.9 -1.6 52 135-191 19-70 (99)
340 2hin_A GP39, repressor protein 33.0 6.3 0.00022 27.8 -0.9 21 163-183 13-33 (71)
341 3dpj_A Transcription regulator 32.6 7.5 0.00026 28.6 -0.5 28 158-185 26-53 (194)
342 2zcm_A Biofilm operon icaabcd 32.5 8.9 0.0003 28.4 -0.1 40 141-185 13-52 (192)
343 2lhi_A Calmodulin, serine/thre 31.9 38 0.0013 25.8 3.4 42 133-174 2-44 (176)
344 2jxx_A Nfatc2-interacting prot 31.9 31 0.001 25.6 2.8 24 163-186 53-76 (97)
345 2k1p_A Zinc finger RAN-binding 31.6 17 0.00057 22.1 1.1 18 53-71 6-23 (33)
346 3cw2_K Translation initiation 30.8 11 0.00039 30.0 0.2 13 53-65 124-136 (139)
347 2opt_A Actii protein; helical 30.7 13 0.00044 30.1 0.5 48 133-185 3-51 (234)
348 1dzk_A PIG OBP, odorant-bindin 30.6 36 0.0012 25.2 3.0 23 133-155 120-143 (157)
349 1u5t_A Appears to BE functiona 30.6 46 0.0016 28.5 4.0 33 143-175 42-76 (233)
350 4fcy_A Transposase; rnaseh, DD 30.5 23 0.00079 31.7 2.2 23 160-182 52-74 (529)
351 3mlf_A Transcriptional regulat 30.4 12 0.00041 27.3 0.3 48 130-177 31-82 (111)
352 3nnf_A CURA; non-HAEM Fe(II)/a 30.4 44 0.0015 30.6 4.0 36 135-170 24-61 (344)
353 2d07_B Ubiquitin-like protein 30.3 36 0.0012 24.4 2.9 26 162-187 43-68 (93)
354 2eke_C Ubiquitin-like protein 30.2 35 0.0012 25.6 2.9 28 160-187 54-81 (106)
355 3e7l_A Transcriptional regulat 29.9 21 0.0007 23.6 1.4 20 163-182 35-54 (63)
356 2jvl_A TRMBF1; coactivator, he 29.8 17 0.00057 26.2 0.9 22 163-184 52-73 (107)
357 3lsg_A Two-component response 29.7 12 0.0004 26.2 0.1 38 141-183 4-42 (103)
358 3lay_A Zinc resistance-associa 29.5 65 0.0022 26.3 4.6 39 133-171 65-123 (175)
359 2enz_A NPKC-theta, protein kin 29.4 28 0.00097 23.3 2.0 32 38-69 24-58 (65)
360 3uej_A NPKC-delta, protein kin 29.3 16 0.00054 24.6 0.7 30 39-68 22-54 (65)
361 1umq_A Photosynthetic apparatu 29.0 16 0.00053 26.4 0.7 37 138-182 40-76 (81)
362 4b6d_A RAC GTPase-activating p 28.8 20 0.0007 24.4 1.2 33 37-69 19-53 (61)
363 1w98_B Cyclin E, G1/S-specific 28.7 1.1E+02 0.0037 25.8 6.0 41 135-175 125-167 (283)
364 2jml_A DNA binding domain/tran 28.6 6.9 0.00024 27.1 -1.3 21 162-182 7-27 (81)
365 2g3b_A Putative TETR-family tr 28.5 4.9 0.00017 30.8 -2.3 28 158-185 21-48 (208)
366 2bnm_A Epoxidase; oxidoreducta 28.3 16 0.00056 28.2 0.7 45 131-177 19-70 (198)
367 2d74_B Translation initiation 28.1 16 0.00055 29.4 0.7 14 53-66 125-138 (148)
368 2fbq_A Probable transcriptiona 27.9 10 0.00034 29.6 -0.6 27 158-184 25-51 (235)
369 2d9a_A B-MYB, MYB-related prot 27.8 76 0.0026 20.6 3.9 23 130-152 5-27 (60)
370 2id6_A Transcriptional regulat 27.6 5.1 0.00017 30.3 -2.3 28 158-185 23-50 (202)
371 3bd9_A Heparan sulfate glucosa 27.1 92 0.0031 25.5 5.2 35 129-174 243-277 (280)
372 1p2x_A RNG2 protein, RAS GTPas 26.9 50 0.0017 26.1 3.4 23 135-157 133-155 (159)
373 2g7g_A RHA04620, putative tran 26.8 14 0.00048 28.9 0.1 45 134-185 9-54 (213)
374 1g2h_A Transcriptional regulat 26.7 35 0.0012 22.5 2.1 39 135-182 17-55 (61)
375 1qbj_A Protein (double-strande 26.6 14 0.00047 26.4 0.0 42 137-183 8-50 (81)
376 3qrx_A Centrin; calcium-bindin 26.5 1.2E+02 0.0042 21.5 5.2 45 129-173 15-60 (169)
377 2g2k_A EIF-5, eukaryotic trans 26.5 17 0.00057 30.1 0.5 14 53-66 119-132 (170)
378 2gfn_A HTH-type transcriptiona 26.5 8.7 0.0003 29.4 -1.1 27 158-184 27-53 (209)
379 3o60_A LIN0861 protein; PSI, M 26.4 16 0.00054 28.0 0.3 27 158-184 38-64 (185)
380 3pge_A SUMO-modified prolifera 26.3 44 0.0015 27.9 3.1 29 160-188 52-80 (200)
381 1jhf_A LEXA repressor; LEXA SO 26.3 33 0.0011 26.8 2.2 42 135-182 3-48 (202)
382 2d1h_A ST1889, 109AA long hypo 26.2 22 0.00076 24.1 1.0 39 134-179 17-55 (109)
383 2io0_B Small ubiquitin-related 26.1 48 0.0016 23.9 2.9 28 160-187 29-56 (91)
384 2f2c_A Cyclin homolog, V-cycli 26.0 63 0.0022 26.5 4.0 42 135-176 126-169 (254)
385 2cch_B Cyclin A2, cyclin-A; co 25.9 77 0.0026 26.1 4.5 40 135-174 113-154 (260)
386 1c9b_A General transcription f 25.8 99 0.0034 24.3 5.0 42 136-177 77-120 (207)
387 2lv7_A Calcium-binding protein 25.7 1.7E+02 0.006 20.4 6.2 52 130-181 24-78 (100)
388 1r8d_A Transcription activator 25.6 11 0.00039 27.4 -0.6 21 162-182 4-24 (109)
389 3o39_A Periplasmic protein rel 25.6 41 0.0014 25.5 2.5 17 134-150 89-105 (108)
390 2dim_A Cell division cycle 5-l 25.5 88 0.003 21.0 4.0 23 130-152 6-28 (70)
391 2yuu_A NPKC-delta, protein kin 25.4 31 0.001 24.3 1.7 31 38-68 29-62 (83)
392 1yoz_A Hypothetical protein AF 25.4 90 0.0031 24.3 4.4 32 139-170 77-109 (116)
393 2fjr_A Repressor protein CI; g 25.3 18 0.0006 27.8 0.4 15 160-174 48-62 (189)
394 2e9h_A EIF-5, eukaryotic trans 25.1 16 0.00055 29.8 0.2 15 53-67 126-140 (157)
395 2pmy_A RAS and EF-hand domain- 24.9 19 0.00065 24.3 0.5 50 131-182 16-68 (91)
396 2o38_A Hypothetical protein; a 24.8 21 0.00072 26.7 0.7 17 158-174 81-97 (120)
397 1f5q_B Gamma herpesvirus cycli 24.7 1.3E+02 0.0043 25.2 5.7 41 135-175 123-165 (252)
398 2jpf_A Hypothetical protein; a 24.6 7.7 0.00026 30.2 -1.8 9 177-185 54-62 (127)
399 2b9r_A Human cyclin B1; cell c 24.6 70 0.0024 26.6 4.0 42 135-176 112-155 (269)
400 2y2z_A SIM16, SIMR, putative r 24.6 22 0.00074 29.4 0.9 46 135-185 26-72 (267)
401 1z0x_A Transcriptional regulat 24.5 11 0.00038 29.5 -0.9 27 159-185 25-51 (220)
402 2o3f_A Putative HTH-type trans 24.4 75 0.0026 23.3 3.8 24 145-173 43-66 (111)
403 3cbc_A Neutrophil gelatinase-a 24.3 52 0.0018 25.4 3.0 23 133-155 160-183 (198)
404 1wz0_A Ubiquitin-like protein 24.2 52 0.0018 24.4 2.8 28 161-188 49-76 (104)
405 3fwb_A Cell division control p 24.2 1.8E+02 0.0063 20.2 6.0 45 129-173 10-55 (161)
406 2io1_B Small ubiquitin-related 24.2 54 0.0019 23.6 2.9 29 160-188 31-59 (94)
407 1ntc_A Protein (nitrogen regul 24.1 27 0.00091 24.8 1.1 35 140-182 52-86 (91)
408 4dh4_A MIF; trimer, isomerase; 24.0 1.1E+02 0.0039 21.9 4.6 35 136-184 68-102 (114)
409 2ylm_A Ubiquitin carboxyl-term 23.7 45 0.0015 31.2 2.9 34 153-186 40-75 (530)
410 1ys7_A Transcriptional regulat 23.3 14 0.00047 28.4 -0.6 51 134-190 158-213 (233)
411 1bj7_A D 2; allergen, lipocali 23.2 59 0.002 24.1 3.0 21 135-155 122-142 (156)
412 2vz4_A Tipal, HTH-type transcr 23.1 14 0.00047 27.0 -0.6 22 162-183 3-24 (108)
413 1j7q_A CAVP, calcium vector pr 23.0 1.6E+02 0.0053 18.9 4.9 42 132-173 4-46 (86)
414 4ghj_A Probable transcriptiona 23.0 24 0.00083 25.8 0.8 22 162-183 51-72 (101)
415 3mf7_A CIS-3-chloroacrylic aci 23.0 94 0.0032 24.3 4.3 37 137-187 74-110 (149)
416 2lci_A Protein OR36; structura 22.8 86 0.003 24.5 3.9 36 138-173 61-100 (134)
417 1ptq_A Protein kinase C delta 22.6 25 0.00085 22.0 0.7 28 39-66 13-43 (50)
418 3u0k_A Rcamp; fluorescent prot 22.6 1.1E+02 0.0039 28.5 5.3 41 131-173 291-334 (440)
419 2cki_A Ulilysin; metalloprotea 22.6 46 0.0016 28.5 2.6 19 131-149 236-254 (262)
420 2enn_A NPKC-theta, protein kin 22.4 31 0.001 24.1 1.2 32 38-69 35-69 (77)
421 2ktg_A Calmodulin, putative; e 22.3 1.4E+02 0.0049 18.9 4.5 40 132-173 4-46 (85)
422 3mlc_A FG41 malonate semialdeh 21.7 68 0.0023 24.4 3.1 33 137-184 77-109 (136)
423 2eli_A Protein kinase C alpha 21.7 37 0.0013 24.1 1.5 32 37-68 28-62 (85)
424 2k8h_A Small ubiquitin protein 21.7 78 0.0027 23.8 3.4 27 161-187 51-77 (110)
425 3fwt_A Macrophage migration in 21.5 1.1E+02 0.0038 23.1 4.3 36 136-185 89-124 (133)
426 3ni7_A Bacterial regulatory pr 21.5 15 0.00051 28.6 -0.7 38 142-184 14-51 (213)
427 1w0t_A Telomeric repeat bindin 21.4 84 0.0029 20.0 3.1 21 132-152 1-21 (53)
428 2hzq_A Apolipoprotein D, APO-D 21.3 81 0.0028 23.9 3.5 22 136-157 133-154 (174)
429 1ais_B TFB TFIIB, protein (tra 21.2 84 0.0029 24.5 3.7 42 136-177 81-126 (200)
430 3o22_A Prostaglandin-H2 D-isom 21.0 69 0.0023 23.9 3.0 21 135-155 126-146 (162)
431 3iwf_A Transcription regulator 21.0 96 0.0033 22.8 3.8 24 145-173 39-62 (107)
432 1rzs_A Antirepressor, regulato 20.9 17 0.00057 24.0 -0.5 20 162-181 12-31 (61)
433 3cuq_A Vacuolar-sorting protei 20.8 40 0.0014 29.0 1.8 35 142-176 21-57 (234)
434 1guu_A C-MYB, MYB proto-oncoge 20.6 85 0.0029 19.7 3.0 21 132-152 2-22 (52)
435 2mys_C Myosin; muscle protein, 20.5 2.1E+02 0.0072 19.5 5.3 37 136-172 2-39 (149)
436 1fex_A TRF2-interacting telome 20.4 76 0.0026 21.3 2.8 47 133-180 2-49 (59)
437 4ich_A Transcriptional regulat 20.2 22 0.00075 29.2 0.0 46 130-175 38-87 (311)
438 1fi6_A EH domain protein REPS1 20.0 39 0.0013 23.1 1.3 15 136-150 3-17 (92)
439 1epa_A Epididymal retinoic aci 20.0 74 0.0025 23.5 3.0 21 135-155 122-142 (164)
No 1
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.89 E-value=6.4e-24 Score=156.33 Aligned_cols=66 Identities=65% Similarity=1.134 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..++||.||.||.+|+++|++|++++||+.+|||..++++||.+|||++.+|||||||+|+|+++.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 456899999999999999999999999999999999999999999999999999999999999873
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.88 E-value=2.8e-23 Score=152.27 Aligned_cols=66 Identities=61% Similarity=1.058 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..++||.||+||.+|++.|+.+|+++||+.+|||..++++||.+|||++.+|||||||+|+|+++.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 456899999999999999999999999999999999999999999999999999999999999874
No 3
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-20 Score=133.92 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
..++||.||.||.+|++.|+.+|++.+|..+||+..++++||.+|||++.+|+|||||+|+|+|+...
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 45679999999999999999999999899999999999999999999999999999999999998543
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=7.1e-19 Score=126.23 Aligned_cols=64 Identities=25% Similarity=0.410 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++||+..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLD----SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 45689999999999999999988774 68999999999999999999999999999999998764
No 5
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.8e-18 Score=126.01 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
.+.+||.||.||.||+..|+.|++.++ .|||++++++|+.++||+++||||||||+|.-.+..
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~---~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVG---LYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHC---SCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCC
Confidence 457899999999999999999888854 589999999999999999999999999999987654
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-18 Score=124.60 Aligned_cols=63 Identities=27% Similarity=0.456 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.+|||++.+|+|||||+|+++||+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAIN----HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 34679999999999999999988874 6899999999999999999999999999999999865
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=9.3e-18 Score=118.57 Aligned_cols=64 Identities=6% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
..+.||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+++||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAAN----KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 34678999999999999999988874 68999999999999999999999999999999999764
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=120.80 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
..+.||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||||+|+|+||...
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQ----KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 45678999999999999999988874 68999999999999999999999999999999999764
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.3e-17 Score=120.45 Aligned_cols=66 Identities=17% Similarity=0.363 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDES 195 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~ 195 (209)
..+.||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+|+||.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKT----RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 34678999999999999999988874 6899999999999999999999999999999999877544
No 10
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=117.90 Aligned_cols=64 Identities=13% Similarity=0.262 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
..+.||.||.||.+|++.|+.+|+. .+||+..++++||.+|||+..+|+|||+|+|+++||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQK----TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4467899999999999999998776 468999999999999999999999999999999999764
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=116.94 Aligned_cols=65 Identities=20% Similarity=0.377 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+++||+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDAN----AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 34678999999999999999988874 689999999999999999999999999999999997643
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=118.34 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||||+|+|+||...
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQ----KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHS----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 45679999999999999999988774 68999999999999999999999999999999998753
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-17 Score=117.81 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
.+..||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+++||...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQET----KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34578999999999999999988874 68999999999999999999999999999999998764
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-17 Score=116.90 Aligned_cols=65 Identities=17% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
..+.||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++||...+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDIN----NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHC----SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 34678999999999999999988774 689999999999999999999999999999999987643
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.65 E-value=3.2e-17 Score=113.18 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=51.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
++||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++||.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQ----KYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 468999999999999999988874 589999999999999999999999999999999985
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.9e-17 Score=116.00 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
.+..||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+++|+...
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQ----KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 34578899999999999999988774 68999999999999999999999999999999988654
No 17
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=5.4e-17 Score=113.30 Aligned_cols=61 Identities=23% Similarity=0.425 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
++||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN----PRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 468999999999999999988874 6899999999999999999999999999999999875
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.64 E-value=3.2e-17 Score=112.88 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
.+||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++||.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNEN----RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 368999999999999999988874 689999999999999999999999999999999873
No 19
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.63 E-value=1.7e-16 Score=113.34 Aligned_cols=65 Identities=8% Similarity=0.164 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDES 195 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~ 195 (209)
.+.||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++||.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATN----KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHT----SCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhC----CCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 3568999999999999999988874 5899999999999999999999999999999999976443
No 20
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=4.2e-17 Score=118.08 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
+..||.||.||.+|++.|+.+|+. .+||+..++++||.+|||+..+|+|||+|+|+|+||..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFER----THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 467899999999999999998776 36899999999999999999999999999999998765
No 21
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-16 Score=113.42 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDESA 196 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~~ 196 (209)
..++.||+||.+|++.|+.+|++. +||+..++++||.++||++.+|+|||+|+|+++||......
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~ 71 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRN----QFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRS 71 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHS----SSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCC
Confidence 345679999999999999988774 68999999999999999999999999999999999875543
No 22
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=112.38 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
.+++||.||.||.+|++.|+.+|+.. .||+..++++||..|||+..+|+|||+|+|+++||+.-
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKT----HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 45678999999999999999988774 58999999999999999999999999999999998754
No 23
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.62 E-value=9.9e-17 Score=116.75 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
..+||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+|+||..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTN----HYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4578999999999999999988874 5899999999999999999999999999999999865
No 24
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.62 E-value=1.1e-16 Score=115.10 Aligned_cols=63 Identities=14% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+++|+..
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQ----RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 34678899999999999999988874 5899999999999999999999999999999998754
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.61 E-value=6.4e-17 Score=112.21 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
+.||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+++||.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFN----KYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 468999999999999999988774 589999999999999999999999999999999875
No 26
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=7.5e-17 Score=109.61 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=53.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK----QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC----CCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 6899999999999999988874 58999999999999999999999999999999875
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.61 E-value=1.7e-16 Score=111.77 Aligned_cols=63 Identities=13% Similarity=0.285 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDES 195 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~ 195 (209)
+||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ----KYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 68999999999999999988874 5899999999999999999999999999999999877544
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.61 E-value=6.7e-17 Score=114.00 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=57.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDES 195 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~ 195 (209)
+||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++||.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN----RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC----SSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC----CCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 68999999999999999988874 5899999999999999999999999999999999876443
No 29
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.61 E-value=1.8e-16 Score=113.99 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
....+|.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||||+|+++|+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFN----MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 44678899999999999999988774 689999999999999999999999999999998864
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.60 E-value=1.2e-16 Score=109.74 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|++.||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE----NYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6899999999999999988874 589999999999999999999999999999998875
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.59 E-value=1.8e-16 Score=106.79 Aligned_cols=57 Identities=16% Similarity=0.288 Sum_probs=52.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASH 189 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~k 189 (209)
+||.||.||.+|++.|+.+|+. .+||+..++++||.++||+..+|+|||+|+|+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ----QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 6789999999999999998776 35899999999999999999999999999999865
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.59 E-value=2e-16 Score=116.31 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
...||.||.||.+|++.|+.+|+. .+||+..++++||.+|||+..+|+|||||+|+++||..
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHF----NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 457899999999999999998776 46899999999999999999999999999999998863
No 33
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.59 E-value=2.5e-16 Score=117.60 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||||+|+|+|+...
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQ----KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 34678999999999999999988874 68999999999999999999999999999999998653
No 34
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-16 Score=109.72 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
.||.||.||.+|++.|+.+|+. .+||+..++++||.++||+..+|+|||+|+|+++|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRV----NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 3789999999999999998776 4689999999999999999999999999999999987654
No 35
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.58 E-value=1.7e-16 Score=111.69 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
.||.||.||.+|++.|+.+|+. .+||+..++++||.+|||+..+|+|||+|+|+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ----GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 5889999999999999998776 35899999999999999999999999999999998754
No 36
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.58 E-value=4.2e-16 Score=116.58 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
....+|.||.||.+|+..|+.+|++ .+||+..++++||.+|||++.+|+|||||+|+|+||..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVR----TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 3456789999999999999998877 36899999999999999999999999999999999864
No 37
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.3e-16 Score=117.65 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhC---------------CCCceeeeecccccccCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVG---------------VKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiG---------------v~r~V~KVWfhNnR~k~kk 190 (209)
..++||.||.||.+|++.|+.+|++ .+||+..++++||.++| |+..+|+|||+|+|+++|+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~----~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE----NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999998888 46899999999999999 9999999999999999987
Q ss_pred CCCC
Q 048824 191 RKDE 194 (209)
Q Consensus 191 ~~~~ 194 (209)
+...
T Consensus 80 ~~~~ 83 (95)
T 2cuf_A 80 RANI 83 (95)
T ss_dssp HHHC
T ss_pred Hhhc
Confidence 6643
No 38
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=6.1e-16 Score=109.79 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
.+.||.||.||.+|++.|+.+|+.. +...||+..++++||.++||+...|+|||+|+|+++++...+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQH-IGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 4678899999999999999977652 345789999999999999999999999999999999887643
No 39
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.57 E-value=3.1e-16 Score=113.52 Aligned_cols=63 Identities=22% Similarity=0.397 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
..++||.||.||.+|++.|+.+|+.. +||+..++++||.+|||+..+|+|||+|+|+++||+.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERT----QYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 34678999999999999999988773 6899999999999999999999999999999998753
No 40
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=8.8e-16 Score=106.33 Aligned_cols=63 Identities=8% Similarity=0.192 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..+|.||.||.+|++.|+.++... ...+||+..++++||.++||+..+|+|||+|+|+++||+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSH-LSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHc-ccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 357899999999999999977321 235689999999999999999999999999999999985
No 41
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.3e-16 Score=110.14 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=55.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCCC
Q 048824 131 RQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDESA 196 (209)
Q Consensus 131 R~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~~ 196 (209)
+.|++||.+|++.|+.+|++. +||+..++++||.+|||+..+|+|||+|+|+++|++.....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 70 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQN----PLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKS 70 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSSC
T ss_pred CCCccCCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhccc
Confidence 467789999999999988874 68999999999999999999999999999999998775443
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.57 E-value=4.1e-16 Score=106.89 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=46.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASH 189 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~k 189 (209)
+++|.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~----~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRK----QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC----CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 568999999999999999988875 6899999999999999999999999999999875
No 43
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.57 E-value=8.3e-16 Score=112.68 Aligned_cols=69 Identities=6% Similarity=0.095 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDES 195 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~ 195 (209)
.+++||.||.||.+|++.|+++++.. +.-.||+..++++||.++||+...|+|||+|+|.++++..-+.
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~-~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKH-RFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHT-TTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 44678999999999999999976653 3457899999999999999999999999999999998765443
No 44
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.57 E-value=8.3e-17 Score=113.11 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
++||.||.||.+|++.|+.+|+. .+||+..++++||.++||+..+|+|||+|+|+++||...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR----NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT----CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 57899999999999999998777 358999999999999999999999999999999987653
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-15 Score=107.69 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
..++.||.||.+|++.|+.+|++. +||+..++++||.++||++.+|+|||+|+|+++||....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKN----QFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 347899999999999999987774 589999999999999999999999999999999987643
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1e-15 Score=112.85 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 131 RQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 131 R~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
+.|++||.+|++.|+..|+.. +|||..++++||.++||++.+|+|||+|+|+|+|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~----~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC----QWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 467789999999999987774 7899999999999999999999999999999998765
No 47
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.54 E-value=1.1e-15 Score=104.94 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||+|+|+++||..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT----HYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 48999999999999988774 5899999999999999999999999999999999864
No 48
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=6.6e-16 Score=115.54 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
...||.||.||.+|++.|+.+|+. .+||+..++++||.+|||+..+|+|||||+|+|+||..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF----NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 457889999999999999998776 36899999999999999999999999999999998753
No 49
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.53 E-value=1.7e-15 Score=122.64 Aligned_cols=61 Identities=13% Similarity=0.349 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
.++||.||.||.+|++.|+.+|++. +||+..++++||.++||++.+|+|||||+|+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMEN----QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4689999999999999999988874 689999999999999999999999999999999986
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.52 E-value=1.8e-15 Score=107.81 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
++.||.||.+|++.|+.+|++. .+||+..++++||.++||+..+|+|||+|+|+++||+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 5689999999999999987751 258999999999999999999999999999999988764
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.52 E-value=3e-15 Score=106.24 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
.||.||.||.+|++.|+.+|... ...+||+..++++||.++||+..+|+|||+|+|+++|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~-~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSH-LSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHh-ccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 37899999999999999977421 235689999999999999999999999999999999887654
No 52
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.51 E-value=4.7e-15 Score=118.69 Aligned_cols=61 Identities=20% Similarity=0.455 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
..++||.||.||.+|++.|+.+|++. +||+..++++||.++||+..+|+|||+|+|+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKN----PLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 35678899999999999999988874 68999999999999999999999999999999987
No 53
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.51 E-value=4.4e-15 Score=118.99 Aligned_cols=62 Identities=16% Similarity=0.407 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..++||.||.||.+|++.|+.+|++. +||+..++++||.++||+..+|+|||||+|+|+||.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEH----SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHc----CCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34678899999999999999988874 589999999999999999999999999999999986
No 54
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=1.9e-15 Score=107.17 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=54.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
.+.||.||.+|++.|+.+|++. .+||+..++++||.++||+..+|+|||+|+|+++||+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 3578999999999999987641 258999999999999999999999999999999998763
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.51 E-value=3e-15 Score=122.28 Aligned_cols=65 Identities=14% Similarity=0.365 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
..++||.||.||.+|++.|+.+|++. +||+..++++||.++||+..+|+|||||+|+|+||...+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKC----PKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 35678899999999999999988874 689999999999999999999999999999999998754
No 56
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.50 E-value=2.5e-15 Score=109.63 Aligned_cols=63 Identities=13% Similarity=0.291 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
.||.||.||.+|++.|+.+|... ...+||+..++++||.++||+..+|+|||+|+|+|+|+..
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h-~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSH-LSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTT-TTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 37899999999999999987421 2356899999999999999999999999999999998875
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.50 E-value=5e-15 Score=108.60 Aligned_cols=63 Identities=14% Similarity=0.258 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
+.++|.||.||.+|++.|+.+|+.. +..+||+..++++||.++||+..+|+|||+|+|+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~-~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKN-IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHT-TSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHh-CCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4567779999999999999977662 44578999999999999999999999999999999873
No 58
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.49 E-value=2.5e-15 Score=102.18 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
|.||.+|++.|+.+|++. +||+..++++||.++||+..+|+|||+|+|+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ----KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc----CCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 789999999999988774 589999999999999999999999999999999875
No 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.48 E-value=6.2e-15 Score=107.64 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
|++.||.||.+|++.|+.+|+.. +...||+..++++||.++||+..+|+|||+|+|+++|+...
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h-~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKN-IENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHT-SSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhh-CCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 45667779999999999977762 44578999999999999999999999999999999998763
No 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.48 E-value=7.5e-15 Score=100.46 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=53.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
.||.||.+|++.|+.+++.. +...||+..++++||.++||+...|+|||+|+|+++||.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKN-IENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHc-CCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 48999999999999977762 334689999999999999999999999999999999875
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.2e-14 Score=104.44 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
+.+||.+|++.|+.+|++. +||+..++++||.+|||++.+|+|||+|+|+|+++....
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~----~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKS----SFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred cccCCHHHHHHHHHHHccC----CCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 3459999999999988874 689999999999999999999999999999999876643
No 62
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.46 E-value=1.8e-14 Score=116.11 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDES 195 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~ 195 (209)
..+.||.||.||.+|++.|+.+|+.. +||+..++++||.++||+..+|+|||||+|.|.|+.....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~ 159 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN----KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC----
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCC
Confidence 34578999999999999999988874 6899999999999999999999999999999999977543
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.45 E-value=1.5e-14 Score=110.42 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHH------------------hC---CCCceeeeeccccc
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNE------------------VG---VKRHVLKVWMHNNK 185 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~e------------------iG---v~r~V~KVWfhNnR 185 (209)
.++||.||.||.+|++.|+.+|++ .+|||..++++||.+ +| |+..+|+|||+|+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~----~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 467899999999999999998776 468999999999999 99 99999999999999
Q ss_pred ccCCCCCCC
Q 048824 186 NASHRRKDE 194 (209)
Q Consensus 186 ~k~kk~~~~ 194 (209)
++.+++...
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 999887643
No 64
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-14 Score=112.88 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHh---------------------CCCCceeeeecccc
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEV---------------------GVKRHVLKVWMHNN 184 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~ei---------------------Gv~r~V~KVWfhNn 184 (209)
+.++||.||+||.+|+..|+.+|++. +|||..++++||+++ +|++.+|+|||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~----~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQ----KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTC----SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 45689999999999999999987773 589999999999999 79999999999999
Q ss_pred cccCCCCC
Q 048824 185 KNASHRRK 192 (209)
Q Consensus 185 R~k~kk~~ 192 (209)
|+++|++.
T Consensus 79 R~k~kr~~ 86 (102)
T 2da6_A 79 RKEEAFRQ 86 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998765
No 65
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.41 E-value=1.7e-14 Score=116.40 Aligned_cols=61 Identities=18% Similarity=0.403 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
.++||.||.||.+|+..|+.+|+. .+||+..++++||.++||+..+|+|||||+|+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLK----SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTT----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHcc----CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 467889999999999999997665 3589999999999999999999999999999999874
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=4.6e-14 Score=101.41 Aligned_cols=59 Identities=10% Similarity=0.214 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 130 KRQRTKFTQEQKDKMLEFA-ERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~fa-Ek~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
.+.|+.||.+|++.|+.+| +. .+||+..++++||.++||++.+|+|||||+|+++|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~----~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV----TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4466678889999999987 66 35899999999999999999999999999999999865
No 67
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=7.9e-14 Score=104.98 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
.||.+|++.|+..|+.. +|++..++++||.+|||++.+|||||||+|+|++++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNS----SVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 89999999999977774 6899999999999999999999999999999987754
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=96.21 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~ 193 (209)
.+..++.+|++.|+.+|++ .+||+..++++||.+|||++.+|+|||||+|+|.++-.+
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~~ 63 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL----NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQS 63 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCccHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCCC
Confidence 3455679999999998776 468999999999999999999999999999999988543
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=94.28 Aligned_cols=56 Identities=9% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
..|.+|++.|+.+|++. +||+..++++||.++||++.+|+|||||+|+|+||+...
T Consensus 10 ~~t~~ql~~LE~~F~~~----~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQ----KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 46899999999988774 589999999999999999999999999999999987643
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.28 E-value=3.1e-13 Score=97.72 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
|.+|++.|+..|++. +||+..++++||..+||++.+|+|||+|+|+++|+
T Consensus 12 ~~~Ql~~LE~~F~~~----~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 12 TKEQIAHLKASFLQS----QFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CHHHHHHHHHHHHGG----GSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 689999999987774 68999999999999999999999999999999886
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=1e-12 Score=94.00 Aligned_cols=54 Identities=9% Similarity=0.239 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
.+|+..|+.+|... ..|++..++++||.+|||++++|||||||||+++|+..+.
T Consensus 9 ~~~~~~LE~~F~~~---~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~ 62 (64)
T 1x2m_A 9 AQPNAILEKVFTAI---TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPS 62 (64)
T ss_dssp SCHHHHHHHHHHTT---CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCC
T ss_pred chHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCC
Confidence 56899999987432 3579999999999999999999999999999999986654
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.20 E-value=3e-12 Score=90.48 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDE 194 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~ 194 (209)
.+||.+|++.|+++++.. +...||+..++++||.++||+...|+|||+|+|.|.+|..-.
T Consensus 3 g~f~~~~~~~L~~~f~~h-~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQH-LTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ---CHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CcCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 379999999999977743 456789999999999999999999999999999999987543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.17 E-value=2.5e-12 Score=108.44 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhC---------------------CCCceeeeecccc
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVG---------------------VKRHVLKVWMHNN 184 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiG---------------------v~r~V~KVWfhNn 184 (209)
..++||.||+||.+|++.|+.+|++. +|||..++++||.+++ |+..+|+|||+||
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~----~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNR 187 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQ----KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 187 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHH----CCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhh
Confidence 34678999999999999999988875 5899999999999999 9999999999999
Q ss_pred cccCCCC
Q 048824 185 KNASHRR 191 (209)
Q Consensus 185 R~k~kk~ 191 (209)
|++.|.+
T Consensus 188 R~~~k~~ 194 (194)
T 1ic8_A 188 RKEEAFR 194 (194)
T ss_dssp HHHCC--
T ss_pred hhhhhcC
Confidence 9998753
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=9.5e-12 Score=91.36 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccC
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNAS 188 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~ 188 (209)
.+|+..|+++|+.. .+|+.+++++||..+||+++||||||+|+|+..
T Consensus 14 k~ql~~Lk~yF~~n----~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMN----MEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 58999999987774 589999999999999999999999999999843
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.06 E-value=4.3e-11 Score=103.37 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhC---------------------CCCceeeeecccc
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVG---------------------VKRHVLKVWMHNN 184 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiG---------------------v~r~V~KVWfhNn 184 (209)
..++||.||+||.+|+..|+.+|++ .+|||..++++||.++| |++.+|+|||+|+
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~----~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDR----QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 4567999999999999999998887 46899999999999988 8889999999999
Q ss_pred cccCC
Q 048824 185 KNASH 189 (209)
Q Consensus 185 R~k~k 189 (209)
|+...
T Consensus 215 R~~~~ 219 (221)
T 2h8r_A 215 RKEEA 219 (221)
T ss_dssp HTTCC
T ss_pred hhhhh
Confidence 98764
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.95 E-value=1e-10 Score=101.12 Aligned_cols=57 Identities=12% Similarity=0.258 Sum_probs=52.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASH 189 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~k 189 (209)
.++.|+.|+.+|++.|+..|+.. .||+..++++||.++||++++|||||+|||.|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~----~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRK----QSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHC----SCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcC----CCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 47899999999999999977774 5899999999999999999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.72 E-value=1.6e-09 Score=82.07 Aligned_cols=59 Identities=5% Similarity=0.030 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
-..|+.++++.|++++... +.-.||+++++++||.++||+...|++||+|+|.|.++..
T Consensus 9 ~~~l~~~~~~iL~~W~~~h-~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEH-RYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHT-SGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 3568999999999966553 4567899999999999999999999999999999987643
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.67 E-value=3e-06 Score=55.00 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=16.4
Q ss_pred ceeeeecccccccCCCCCC
Q 048824 175 HVLKVWMHNNKNASHRRKD 193 (209)
Q Consensus 175 ~V~KVWfhNnR~k~kk~~~ 193 (209)
+.|+|||||+|+|+||+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 3689999999999999763
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=94.99 E-value=0.013 Score=41.80 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 048824 126 TGKSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 126 ~~~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhN 183 (209)
+.++|+.|.+||.|+++......+ .|. .+.++|.++||++.+|..|...
T Consensus 13 ~~~~~~~~~~ys~e~k~~~v~~~~-~g~--------s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 13 GTKGKRPLRSLTPRDKIHAIQRIH-DGE--------SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSCCSSCCSSCCHHHHHHHHHHHH-HTC--------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred hccCCCCCCCCCHHHHHHHHHHHH-CCC--------CHHHHHHHHCcCHHHHHHHHHH
Confidence 444567788999999887776543 341 4788999999999999999854
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=93.89 E-value=0.015 Score=43.17 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
.|+.||.|+|.++....+..| . ..+.++|.++||++.+|.-|..+.+.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g----~---~~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENP----D---LRKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCT----T---SCHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCC----C---CcHHHHHHHhCCCHHHHHHHHhchhh
Confidence 688999999999988775544 1 23447899999999999999988654
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=93.30 E-value=0.035 Score=36.83 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccc
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhN 183 (209)
|.+||.|.|..+..+.+. | ......+.++|.++||+..+|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~-g----~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-D----NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-C----TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-C----CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 568999999988655432 2 111113789999999999999999754
No 82
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=91.31 E-value=0.064 Score=36.81 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|+.++.++.+.+..+.+++-...... ..++||..+||++..|.-|..+++
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~---sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM---SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS---CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 78899999998888877763222222 667999999999999999988765
No 83
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.28 E-value=0.055 Score=38.61 Aligned_cols=45 Identities=27% Similarity=0.532 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHHh-CcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 133 RTKFTQEQKDKMLEFAERI-GWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~-GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|.+||.|++..+....... | ..+.++|.++||++.+|..|...-+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g--------~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG--------ASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG--------SCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------ChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4689999998877654322 3 2588999999999999999986544
No 84
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=91.18 E-value=0.054 Score=33.22 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
+++.++++.+....+ .|+ .+.++|..+||++.+|.-|+.....
T Consensus 5 ~~~~~~~~~i~~l~~-~g~--------s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLE-KGH--------PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHH-TTC--------CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 578888877776533 232 5789999999999999999976543
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=90.64 E-value=0.035 Score=33.40 Aligned_cols=43 Identities=9% Similarity=0.361 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+++.++++.+..+.. .|+ .+.++|..+||++.+|..|+..-+
T Consensus 4 ~~l~~~~~~~i~~~~~-~g~--------s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKL-LNV--------SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 4688998877776532 232 477899999999999999996543
No 86
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=89.80 E-value=0.13 Score=37.13 Aligned_cols=50 Identities=14% Similarity=0.351 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCC-HHHHHHHHHHhCCCCceeeeecccc
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQD-DVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd-~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
|.+||.|+|..+.......|+. +.. ...+.++|.++||+..+|..|..--
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~--~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGE--YDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccc--cccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 4579999998877754332210 111 2478999999999999999998653
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=87.47 E-value=0.33 Score=37.60 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=37.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHhCcccCCCCHHHHHH-HHHHh--CCCCceeeeeccccc
Q 048824 130 KRQRTKFTQEQKDKMLEFA-ERIGWRMQRQDDVALNQ-FCNEV--GVKRHVLKVWMHNNK 185 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~fa-Ek~GW~iqkpd~~~ve~-fc~ei--Gv~r~V~KVWfhNnR 185 (209)
++.|+.+|-+||.+|.+++ +..+ .....++.. |.++. ||++.+|.-|..|+.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~----~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQN----RSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSS----CCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 6799999999999999998 4432 233333333 33377 899999999997744
No 88
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=86.59 E-value=0.09 Score=37.00 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 131 RQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 131 R~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..-..+|..|++.|.-+++ | ...+++|+.+||+..+|+.++++-+.|++..
T Consensus 17 ~~~~~Lt~~e~~vl~l~~~--g--------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIAQ--G--------LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CCGGGSCHHHHHHHHHHTT--T--------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HHHccCCHHHHHHHHHHHc--C--------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3445699999999887632 2 2678999999999999999999988888764
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=84.56 E-value=0.15 Score=36.80 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
..+|..|++.|.-+++- + ..+++|..+||+..+|+.++++-+.|++...
T Consensus 26 ~~Lt~~e~~vl~l~~~g--~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG--L--------TNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp -CCCHHHHHHHHHHHTT--C--------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 36899999999887333 2 4689999999999999999999998887654
No 90
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=84.34 E-value=0.42 Score=34.95 Aligned_cols=44 Identities=9% Similarity=0.360 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
..+|.+++..+....+ .|+ .+.++|..+||++.+|.-|+...+.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~--------s~~~ia~~lgis~~Tv~r~~~~~~~ 48 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV--------SLHEMSRKISRSRHCIRVYLKDPVS 48 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHSGGG
T ss_pred ccCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHcccc
Confidence 6789999998888653 453 4678899999999999999986553
No 91
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=84.16 E-value=0.22 Score=38.20 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+-++++.+-|.++ +.-+.-+...++++|++.||++.+|-..|.|+.
T Consensus 28 ~~r~~Il~aa~~l-f~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~ 73 (215)
T 2qko_A 28 ERRAALVNAAIEV-LAREGARGLTFRAVDVEANVPKGTASNYFPSRD 73 (215)
T ss_dssp HHHHHHHHHHHHH-HHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHH
T ss_pred HHHHHHHHHHHHH-HHHhChhhccHHHHHHHcCCCcchHHHhCCCHH
Confidence 3344444433333 212235667899999999999999999998854
No 92
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=84.07 E-value=0.22 Score=40.11 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.++|.+|++.|..+.+++--.+..... ..++||+.+||++.+|.-|..+++
T Consensus 5 ~~lt~~~~~~~~~~~~~l~~~r~~~g~-t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 5 KPLTQEQLEDARRLKAIYEKKKNELGL-SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHTTTTTC-CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357888887776666665322222222 568899999999999999998754
No 93
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=84.01 E-value=0.33 Score=39.55 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCC---HHHHHHHHHHhCCCCceeeeeccccc
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQD---DVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd---~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|-+||.|+|+....++++- +. .++ .-.++++|.++||++.+|--|....+
T Consensus 21 ~r~yt~EfK~aAv~l~~~~-~~--~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~p 73 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENE-LM--ESNNEEKRTQDEMANELGINRTTLWEWRTKNQ 73 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHH-HC--C---CCCCCHHHHHHHHTCCHHHHHHHHHHCH
T ss_pred hhhcCHHHHHHHHHHHHcc-cc--ccccccCCCHHHHHHHhCCCHHHHHHHHHcCc
Confidence 5569999999988877652 21 121 24889999999999999999987543
No 94
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=83.85 E-value=0.2 Score=37.93 Aligned_cols=47 Identities=11% Similarity=0.323 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|.+.||++.+|-..|.|+.
T Consensus 16 ~~~r~~Il~aA~~l-~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 16 TQNRDKLILAARNL-FIERPYAQVSIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHHHHHH-HHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred hHHHHHHHHHHHHH-HHHCCCCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 45667777766665 333345667899999999999999999997753
No 95
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=83.79 E-value=0.17 Score=37.71 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-..|.|+-
T Consensus 16 ~~~r~~Il~aa~~l-f~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (208)
T 3cwr_A 16 AVVRESIVGAAQRL-LSSGGAAAMTMEGVASEAGIAKKTLYRFASGRA 62 (208)
T ss_dssp HHHHHHHHHHHHHH-HHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-HHHcCHHhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 55566666544443 222234566899999999999999999988753
No 96
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=83.10 E-value=0.9 Score=34.71 Aligned_cols=44 Identities=7% Similarity=0.154 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
.++|.|++.++....+ .|+ .+.++|..+||++.+|..|+...+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~--------s~~~IA~~lgis~~TV~rwl~r~~~ 67 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV--------RPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC--------CHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 4799999999888764 353 4678899999999999999986554
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=82.26 E-value=0.2 Score=33.60 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
.++..|++.|.-.+ | +..-+....+++|..+||++.+|+.+.+.-+.++++..
T Consensus 5 ~L~~~er~il~l~~---~--l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRF---G--IDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHT---T--TTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHH---c--cCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888998888752 0 00012336789999999999999999999999888754
No 98
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=82.23 E-value=0.51 Score=33.49 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.++|.|++.++....+ .|+ .+.++|..+||++.+|..|+..-+
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~--------s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGI--------RPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3699999999988754 453 357889999999999999998644
No 99
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=82.01 E-value=0.13 Score=36.52 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
.=..+|..|++.|.-+++ |+ ..+++|..+||+..+|+.++++-+.|++.+
T Consensus 26 ~l~~Lt~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAK--GY--------SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TGGGCCSHHHHHHHHHHT--TC--------CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHhcCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 345689999999987643 32 456899999999999999999999888764
No 100
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=81.75 E-value=0.23 Score=36.73 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
..+||..|++.|.-+++ |+ ..+++|..+||+..+|+.++++-+.|+.-
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~--------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF--------LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 56799999999987764 32 45899999999999999999987776653
No 101
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=81.40 E-value=0.17 Score=33.55 Aligned_cols=49 Identities=6% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
.-..+|..|++.|.-+++ |+ ..+++|+.+||+..+|+.++++-+.+++.
T Consensus 8 ~~~~L~~~e~~il~~~~~--g~--------s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQ--DK--------TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHHHTT--TC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHc--CC--------CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 345689999999887632 21 57899999999999999999987777654
No 102
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=81.33 E-value=0.2 Score=39.21 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-.+|.|+-
T Consensus 42 ~~~r~~Il~aA~~l-~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 42 AERLTRILDACADL-LDEVGYDALSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp HHHHHHHHHHHHHH-HHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-HHhcChhhccHHHHHHHHCCCchhHHHHcCCHH
Confidence 44455555533333 111235667899999999999999999998753
No 103
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=80.93 E-value=0.16 Score=34.28 Aligned_cols=47 Identities=6% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
.+|..|++.|.-+++ |+ ..+++|+.+|++..+|+.++++-+.|++..
T Consensus 16 ~L~~~e~~vl~l~~~--g~--------s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL--------PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC--------CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 478888888877532 22 457999999999999999999988888764
No 104
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=80.32 E-value=0.38 Score=35.67 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+-++++.+-|.++ +.-+.-+...++++|++.||++.+|-..|.|+-
T Consensus 17 ~~r~~Il~aa~~l-~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 17 KRKQQLMEIALEV-FARRGIGRGGHADIAEIAQVSVATVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHHHHHH-HHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHHH-HHhcCcccccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3445666544444 222335567899999999999999999998853
No 105
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=80.25 E-value=0.18 Score=34.38 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+|.|+++.+..+.+.+--...... -..++||..+||++..|.-|..+++
T Consensus 2 lt~~~~~~~~~l~~~l~~~r~~~g-ltq~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELG-LSYESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHTTSCHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHhCcCHHHHHHHHcCCC
Confidence 577777777666555321111001 1356889999999988888887654
No 106
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=80.00 E-value=0.46 Score=36.23 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-.+|.|+-
T Consensus 29 ~~~r~~Il~aa~~l-~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 75 (212)
T 2np3_A 29 TRTREAILTAARVC-FAERGFDATSLRRIAETAGVDQSLVHHFYGTKE 75 (212)
T ss_dssp ------CHHHHHHH-C---------------------------CCC-C
T ss_pred HHHHHHHHHHHHHH-HHHcCcccccHHHHHHHcCCCHHHHHHHhCCHH
Confidence 34455555544444 222346678999999999999999999998764
No 107
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=79.85 E-value=0.091 Score=37.30 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHH-HHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 135 KFTQEQKDKMLE-FAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 135 kFT~EQkekM~~-faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
+++..|++.|.- |++. ...+++|..+||+..+|+++++.-|.++++
T Consensus 37 ~L~~~~r~vl~l~~~~g----------~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG----------WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC----------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467888888776 4222 267899999999999999999988887764
No 108
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=79.60 E-value=0.68 Score=34.81 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+||.|++.++....+ .|| .+.++|..+||++.+|.-|+...+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~--------s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV--------RPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC--------CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4699999999988764 454 367889999999999999998644
No 109
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=79.60 E-value=2.3 Score=31.00 Aligned_cols=36 Identities=8% Similarity=0.288 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
|.|||++|-+- ..+-.|+-||++...|+||.+--..
T Consensus 12 T~EQK~~lI~~--------------VT~a~~eslgap~esVrVlItE~p~ 47 (70)
T 3ej9_B 12 SVARKQQLIRD--------------VIDVTNKSIGSDPKIINVLLVEHAE 47 (70)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEECG
T ss_pred CHHHHHHHHHH--------------HHHHHHHHcCCChHHEEEEeeeCCh
Confidence 68999988754 6778899999999999999986543
No 110
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=79.00 E-value=0.12 Score=33.94 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHH-HHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 135 KFTQEQKDKMLEF-AERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 135 kFT~EQkekM~~f-aEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
.++..|++.+.-+ ++. ...+++|..+|++..+|+.|.+.-+.++++..
T Consensus 15 ~L~~~~r~il~l~~~~g----------~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG----------LSYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTSC----------CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4788899888764 222 25689999999999999999999888887654
No 111
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=78.91 E-value=0.31 Score=36.62 Aligned_cols=46 Identities=9% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-.+|.|+-
T Consensus 31 ~~r~~Il~aa~~l-~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 31 DRRTQIIKVATEL-FREKGYYATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHHHHH-HHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred chHHHHHHHHHHH-HHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3445555433333 212235567899999999999999999998764
No 112
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=77.47 E-value=0.15 Score=39.06 Aligned_cols=53 Identities=6% Similarity=0.076 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCCCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRKDES 195 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~~~~ 195 (209)
.+++..|++.+.-. +-+.-..+++|..+||+..+|+++++.-|.++++.....
T Consensus 92 ~~Lp~~~r~vl~L~---------~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~ 144 (157)
T 2lfw_A 92 ARMTPLSRQALLLT---------AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRAL 144 (157)
T ss_dssp TTSCTTHHHHHTTT---------SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HhCCHHHHHHHHHH---------HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888887642 334447899999999999999999999999999876544
No 113
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.27 E-value=0.7 Score=33.61 Aligned_cols=38 Identities=8% Similarity=0.193 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecc
Q 048824 141 KDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 141 kekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfh 182 (209)
.+.|+.++.+. +...++.++.||.+.+|+-.-||-||-
T Consensus 18 ~e~L~~Yy~~h----k~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAH----QQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHT----CCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHHh----cccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 36788886664 248899999999999999999999994
No 114
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=76.97 E-value=0.36 Score=36.65 Aligned_cols=46 Identities=7% Similarity=0.115 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+-++++.+.|.++ +.-+.-+...++++|.+.||++.+|-..|.|+-
T Consensus 30 ~~r~~Il~aA~~l-~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~ 75 (222)
T 3bru_A 30 LAHQSLIRAGLEH-LTEKGYSSVGVDEILKAARVPKGSFYHYFRNKA 75 (222)
T ss_dssp GHHHHHHHHHHHH-HHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hHHHHHHHHHHHH-HHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHH
Confidence 3445555433333 222235677899999999999999999998753
No 115
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=76.83 E-value=0.62 Score=34.67 Aligned_cols=28 Identities=0% Similarity=0.029 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+-
T Consensus 34 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (211)
T 3him_A 34 YGATTTREIAASLDMSPGAVYPHYKTKE 61 (211)
T ss_dssp STTCCHHHHHHHTTCCTTSSTTTCSSHH
T ss_pred CCcCCHHHHHHHhCCCcChhhhcCCCHH
Confidence 4566899999999999999999998764
No 116
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=76.37 E-value=0.5 Score=39.17 Aligned_cols=49 Identities=8% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..+++..|++.|.-+++ |+ ..+++|+.+||+..+|++..++-|.|++..
T Consensus 195 ~~~L~~~erevl~L~~~--G~--------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 195 RNILSEREKEILRCIRK--GL--------SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TTSSCHHHHHHHHHHHT--TC--------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHHHHc--CC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 35799999999987643 32 678999999999999999999999998875
No 117
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=75.23 E-value=0.64 Score=34.97 Aligned_cols=48 Identities=13% Similarity=0.374 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-..|.|+-
T Consensus 11 ~~~~r~~Il~aA~~l-f~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~ 58 (217)
T 3nrg_A 11 PEEKRSRLIDVLLDE-FAQNDYDSVSINRITERAGIAKGSFYQYFADKK 58 (217)
T ss_dssp CHHHHHHHHHHHHHH-HHHSCGGGCCHHHHHHHHTCCTTGGGGTCSSHH
T ss_pred hHHHHHHHHHHHHHH-HHhcCcccCCHHHHHHHhCCcHHHHHHHcCCHH
Confidence 466677777655554 222335567899999999999999999998853
No 118
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=74.20 E-value=1.3 Score=32.50 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 30 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 57 (199)
T 3on2_A 30 VDGLSLRQLAREAGVSHAAPSKHFRDRQ 57 (199)
T ss_dssp GGGCCHHHHHHHTC-----CCCSSSSHH
T ss_pred hhhhhHHHHHHHhCCChHHHHHHhCCHH
Confidence 4556799999999999999999998853
No 119
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=74.18 E-value=0.42 Score=35.86 Aligned_cols=47 Identities=17% Similarity=0.324 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
..+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-..|.|+
T Consensus 24 ~~~~r~~Il~aA~~l-~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 70 (217)
T 3mvp_A 24 SIEKRNKILQVAKDL-FSDKTYFNVTTNEIAKKADVSVGTLYAYFASK 70 (217)
T ss_dssp HHHHHHHHHHHHHHH-HHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred chhHHHHHHHHHHHH-HHHcCccccCHHHHHHHhCCChhHHHHHcCCH
Confidence 344555555533333 22223566789999999999999999988775
No 120
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=73.86 E-value=0.82 Score=34.58 Aligned_cols=27 Identities=4% Similarity=0.199 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|++.||++.+|=..|.|+
T Consensus 32 ~~~~s~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 32 YSETSIGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp TTTSCHHHHHHHTTCCGGGGTTTCSCH
T ss_pred cccCCHHHHHHHhCCCcCeeeeeeCCH
Confidence 566789999999999999999999875
No 121
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=73.13 E-value=1 Score=28.69 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 142 DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 142 ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
++|+.+-+..|| ..++||..+||++.+|.-|..+.+
T Consensus 8 ~~l~~~r~~~g~--------s~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 8 ERIRARRKKLKI--------RQAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHHHTC--------CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCC--------CHHHHHHHHCCCHHHHHHHHcCCC
Confidence 445555556665 356788888888888888887643
No 122
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=72.69 E-value=0.63 Score=36.43 Aligned_cols=47 Identities=13% Similarity=0.342 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-..|.|+.
T Consensus 43 ~~~r~~Il~aA~~l-f~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 43 DDRELAILATAENL-LEDRPLADISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp HHHHHHHHHHHHHH-HHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-HHHcCcccCCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 45555555544443 222235567899999999999999999998754
No 123
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=72.59 E-value=0.67 Score=34.97 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=.+|.|+-
T Consensus 30 ~~~~t~~~IA~~agvsk~tlY~~F~sKe 57 (192)
T 2fq4_A 30 FKAVTVDKIAERAKVSKATIYKWWPNKA 57 (192)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccccHHHHHHHcCCCHHHHHHHCCCHH
Confidence 5667899999999999999999998764
No 124
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=72.53 E-value=0.39 Score=36.72 Aligned_cols=44 Identities=14% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 140 QKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 140 QkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-++++.+-|.++ +.-+. +...++++|++.||++.+|-.+|.|+.
T Consensus 21 ~r~~Il~aA~~l-f~~~G-~~~s~~~IA~~aGvs~~tlY~~F~sK~ 64 (215)
T 2hku_A 21 TRDALFTAATEL-FLEHG-EGVPITQICAAAGAHPNQVTYYYGSKE 64 (215)
T ss_dssp HHHHHHHHHHHH-HHHHC-TTSCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHHHHHHHH-HHHhC-CCcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344444444443 22236 788999999999999999999998754
No 125
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=72.35 E-value=1.7 Score=29.76 Aligned_cols=24 Identities=4% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCCceeeeeccccc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..++||..+||++.+|.-|..+++
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899999999999999987753
No 126
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=71.97 E-value=5.9 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.|.|||++|-+- .-+.++..+|++...+-|.|+-.
T Consensus 10 rt~eqK~~L~~~--------------it~~~~~~lg~~~~~v~V~i~E~ 44 (62)
T 3m20_A 10 LDVGKKREFVER--------------LTSVAAEIYGMDRSAITILIHEP 44 (62)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHTCCTTSCEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcceEEEEEEEe
Confidence 589999988764 55678889999999999988755
No 127
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=71.68 E-value=0.35 Score=34.10 Aligned_cols=53 Identities=6% Similarity=-0.022 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRRK 192 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~~ 192 (209)
.++..|++.+.-.+- +........+++|..+||++.+|+.|.+.-+.++++..
T Consensus 18 ~L~~~er~vl~l~~~-----l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYG-----LLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHT-----TTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHc-----cCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 477888888876421 00012336789999999999999999999988887653
No 128
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=71.63 E-value=1.1 Score=28.85 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 142 DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 142 ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
++|+.+-+..|| ..++||..+||++.+|.-|..+++.
T Consensus 6 ~~l~~~r~~~gl--------sq~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 6 ERLKKRRIALKM--------TQTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHHTTC--------CHHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCC--------CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 445555556665 3578899999999999888877543
No 129
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=71.21 E-value=0.76 Score=34.54 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|.+.||++.+|-..|.|+-
T Consensus 18 ~~~r~~Il~aA~~l-f~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~ 64 (216)
T 3qqa_A 18 LARQEKIKAVALEL-FLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKE 64 (216)
T ss_dssp HHHHHHHHHHHHHH-HHHTCTTTCCHHHHHHHHTTSCCSSSCSCCSHH
T ss_pred HHHHHHHHHHHHHH-HHHcChhhCCHHHHHHHhCCCHHHHHHhcCCHH
Confidence 44455555544444 222346677899999999999999999998753
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=71.00 E-value=0.69 Score=33.38 Aligned_cols=48 Identities=8% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASH 189 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~k 189 (209)
.--.||..|++.|.-++ .|+ ..+++|..+||+..+|+..+.+-+.|+.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~--------s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGF--------TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTC--------CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHH--cCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45569999999998876 343 5789999999999999999888777765
No 131
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=70.65 E-value=0.87 Score=35.43 Aligned_cols=46 Identities=4% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASH 189 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~k 189 (209)
+++..|++.|.-+ +-..-..+++|..+||+..+|+.+++.-+.++|
T Consensus 198 ~L~~~~r~vl~l~---------~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLR---------YYKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred hCCHHHHHHHHHH---------HhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 3566666666542 233457889999999999999999998887764
No 132
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=70.43 E-value=0.21 Score=36.75 Aligned_cols=46 Identities=7% Similarity=0.129 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
.++..|++.|.-+. ..-..+++|..+||+..+|+.+++.-|.++++
T Consensus 109 ~L~~~~r~v~~~~~----------~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLTYLI----------RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHHHHT----------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH----------cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56777777777221 22267899999999999999999988877764
No 133
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=69.96 E-value=0.64 Score=34.47 Aligned_cols=28 Identities=4% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+...++++|++.||++.+|-..|.|+-
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 32 FHETSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred cccccHHHHHHHhCCchHHHHHHhCCHH
Confidence 5667899999999999999999997753
No 134
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=69.33 E-value=2.3 Score=30.91 Aligned_cols=45 Identities=7% Similarity=0.082 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhC--CCCceeeeecccccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVG--VKRHVLKVWMHNNKN 186 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiG--v~r~V~KVWfhNnR~ 186 (209)
.++|.++++.+..+.+..+| ..++++.++| ++..+|..|++...-
T Consensus 59 ~~l~~~~~~~i~~~~~~~~~--------s~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRAASNSCK--------TARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHHHHHCCC--------CHHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHHHhCCCC--------CHHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 36899999988887444333 2467788888 799999999987765
No 135
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=68.73 E-value=0.76 Score=35.38 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ |.-+.-+...++++|++.||++.+|-..|-|+.
T Consensus 23 ~~~r~~Il~aA~~l-f~e~G~~~~s~~~IA~~aGvskgtlY~yF~sKe 69 (214)
T 2oer_A 23 SELVASILEAAVQV-LASEGAQRFTTARVAERAGVSIGSLYQYFPNKA 69 (214)
T ss_dssp CHHHHHHHHHHHHC-------CCCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-HHhhCcccccHHHHHHHhCCCCchHHHhCCCHH
Confidence 45567677666665 333345667899999999999999999888753
No 136
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=68.53 E-value=0.9 Score=35.94 Aligned_cols=47 Identities=13% Similarity=0.342 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|.+.||++.+|-..|.|+.
T Consensus 42 ~~~r~~Il~AA~~l-f~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 42 DDRELAILATAENL-LEDRPLADISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp CHHHHHHHHHHHHH-HTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHH-HHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34455555555554 222334567899999999999999999998764
No 137
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=68.49 E-value=1.5 Score=28.63 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=14.2
Q ss_pred HHHHHHHhCCCCceeeeecccc
Q 048824 163 LNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.++||..+||++.+|.-|..++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4566666777776666666553
No 138
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=68.47 E-value=7.8 Score=25.72 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
..|.|||++|-+- .-+.+++.+|+++..+-|-|+-.
T Consensus 13 grs~eqK~~l~~~--------------lt~~l~~~lg~p~~~v~V~i~e~ 48 (67)
T 3m21_A 13 GPTNEQKQQLIEG--------------VSDLMVKVLNKNKASIVVIIDEV 48 (67)
T ss_dssp BSCHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEC
T ss_pred CCCHHHHHHHHHH--------------HHHHHHHHHCcCcccEEEEEEEe
Confidence 5689999998864 45678889999999998887754
No 139
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=68.27 E-value=1.5 Score=28.04 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 142 DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 142 ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
++|+.+-+..|| ..++||..+||++.+|.-|..+++.
T Consensus 4 ~~l~~~r~~~gl--------sq~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 4 SRVKSKRIQLGL--------NQAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHHTTC--------CHHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 345555555554 3577888889998888888876543
No 140
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=67.50 E-value=1.2 Score=34.67 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 141 KDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 141 kekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
++.-.+.+.+.| -+...++++|++.||++.+|-..|.|+-
T Consensus 36 l~aA~~lf~~~G-----~~~~t~~~IA~~Agvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 36 LSVAVQVFIERG-----YDGTSMEHLSKAAGISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHC-----TTTCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHcC-----ccccCHHHHHHHHCCChhHHHHhCCCHH
Confidence 444444444445 4556799999999999999999887753
No 141
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=67.20 E-value=0.81 Score=37.21 Aligned_cols=48 Identities=6% Similarity=0.179 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
...+|..|++.|.-+++ | + ..+++|..+||+.++|+..++|-+.|+.-
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g----~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--G----K----TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--T----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHc--C----C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 56799999999877653 3 2 56889999999999999999998887653
No 142
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=67.07 E-value=0.31 Score=36.37 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-..|.|+.
T Consensus 19 ~~~r~~Il~aA~~l-~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~ 65 (203)
T 3mnl_A 19 RERRKRILDATMAI-ASKGGYEAVQMRAVADRADVAVGTLYRYFPSKV 65 (203)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hHHHHHHHHHHHHH-HHHcCCccCCHHHHHHHcCCChhHHHHHcCCHH
Confidence 33355555533333 111124456899999999999999999998853
No 143
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=66.93 E-value=0.35 Score=32.75 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASH 189 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~k 189 (209)
.++..|++.+.-.+- +........+++|..+||++.+|+.|.+.-+.+++
T Consensus 10 ~L~~~er~il~l~~~-----l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKG-----LIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHT-----TTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHh-----cccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 578999999887531 00012236789999999999999999998888877
No 144
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=65.89 E-value=1.8 Score=28.48 Aligned_cols=36 Identities=8% Similarity=0.326 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 142 DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 142 ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+.|..+-++.|| ..++||..+||++.+|.-|..+++
T Consensus 10 ~~l~~~r~~~g~--------sq~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 10 EHLMELITQQNL--------TINRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHTTC--------CHHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 344445455554 246677777777777777776654
No 145
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=65.73 E-value=1.8 Score=27.98 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCceeeeecccc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
..++||..+||++.+|.-|..+.
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCC
Confidence 35678888888888888887664
No 146
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=65.72 E-value=0.25 Score=37.29 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHH-HHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 134 TKFTQEQKDKMLEF-AERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 134 TkFT~EQkekM~~f-aEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
..++..|++.+.-+ ++. ...+++|..+||+..+|+.|++.-|.++++
T Consensus 21 ~~L~~~~r~vl~l~y~~g----------~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADD----------YSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GGSCHHHHHHHHHHHHTC----------CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC----------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46889999988864 332 257899999999999999999988877653
No 147
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=65.71 E-value=1.8 Score=28.90 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=9.7
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 048824 164 NQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 164 e~fc~eiGv~r~V~KVWfhN 183 (209)
++||..+||++.+|.-|..+
T Consensus 19 ~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHcC
Confidence 34455555555555444444
No 148
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=65.51 E-value=1.3 Score=34.31 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 53 ~~~~s~~~IA~~AGvs~~tlY~~F~sKe 80 (237)
T 3kkd_A 53 VRAVRHRAVAAEAQVPLSATTYYFKDID 80 (237)
T ss_dssp GGGCCHHHHHHHHTSCTTTC-----CHH
T ss_pred hhhcCHHHHHHHhCCChhHHHHHcCCHH
Confidence 4566799999999999999999998753
No 149
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=65.15 E-value=0.66 Score=36.22 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.+...++++|.+.||++.+|-.+|-|+
T Consensus 32 ~~~~s~~~IA~~AGvs~~tlY~~F~sK 58 (208)
T 3v6g_A 32 LGGLSHRRVAAEANVPVGSTTYYFNDL 58 (208)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred cccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 455679999999999999999999875
No 150
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=64.56 E-value=1.9 Score=28.21 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCCceeeeeccccc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..++||..+||++.+|.-|..+.+
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 356788888888888887776643
No 151
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=64.30 E-value=0.38 Score=37.28 Aligned_cols=44 Identities=16% Similarity=0.463 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCC-CCceeeeecccc
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGV-KRHVLKVWMHNN 184 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv-~r~V~KVWfhNn 184 (209)
.-|+||+|..+++.+.... | ..+.++|...|| ++.+|--|++.+
T Consensus 9 RPtk~t~e~~e~I~~~i~~-G--------~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 9 RPSDYMPEVADDICSLLSS-G--------ESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp -CCSCCTTHHHHHHHHHHT-T--------CCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHC-C--------CcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 3489999998887775432 3 367889999999 899999998764
No 152
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=64.20 E-value=2 Score=32.33 Aligned_cols=28 Identities=7% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=..|.|+.
T Consensus 31 ~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 58 (195)
T 2iu5_A 31 YHQISVSDIMQTAKIRRQTFYNYFQNQE 58 (195)
T ss_dssp GGGCCHHHHHHHHTSCGGGGGGTCSSHH
T ss_pred CCeeCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4566899999999999999999998753
No 153
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=64.14 E-value=0.93 Score=33.77 Aligned_cols=28 Identities=4% Similarity=0.051 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+-
T Consensus 30 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (202)
T 3lwj_A 30 YYNTSIRDIIALSEVGTGTFYNYFVDKE 57 (202)
T ss_dssp TTTCCHHHHHHHHCSCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCchhHHHHcCCHH
Confidence 5567899999999999999998888753
No 154
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=63.59 E-value=0.38 Score=36.11 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
..++..|++.+.-++ -.....+++|..+|++..+|+++++.-|.++++
T Consensus 24 ~~L~~~~r~vl~l~~---------~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 24 SLLTNKQRNYLELFY---------LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GGSCHHHHHHHHHHH---------TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH---------HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 357788888877631 122267899999999999999999988877653
No 155
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=63.40 E-value=0.93 Score=33.85 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 34 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (213)
T 2qtq_A 34 VVDISLSELSLRSGLNSALVKYYFGNKA 61 (213)
T ss_dssp SSCCCHHHHHHHHCCCHHHHHHHHSSHH
T ss_pred cccccHHHHHHHhCCChhhHhHhcCCHH
Confidence 4556799999999999999999988853
No 156
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=63.34 E-value=9.8 Score=25.99 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
++|.|||++|-+- .-+.+++.+|++...+-|.|+...
T Consensus 11 rls~eqk~~L~~~--------------l~~~l~~~lgip~~~v~V~i~e~~ 47 (76)
T 1gyx_A 11 ELDEQQKAALAAD--------------ITDVIIRHLNSKDSSISIALQQIQ 47 (76)
T ss_dssp CCCHHHHHHHHHH--------------HHHHHHHHHTCCGGGCEEEEEECC
T ss_pred CCCHHHHHHHHHH--------------HHHHHHHHhCcCCceEEEEEEEeC
Confidence 4789999988764 456688889999999888887553
No 157
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=63.14 E-value=0.96 Score=33.86 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+-|.++ +.-+.-+...++++|++.||++.+|-..|.|+.
T Consensus 17 ~~~r~~Il~aa~~l-~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 17 SAKKKAILSAALDT-FSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp HHHHHHHHHHHHHH-HHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred HHHHHHHHHHHHHH-HHHcCcchhhHHHHHHHHCCChhHHHHhCCCHH
Confidence 44455555543333 111234566799999999999999999988753
No 158
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=63.01 E-value=0.93 Score=34.45 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 141 KDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 141 kekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
++++.+-|.++ +.-+.-+...++++|++.||++.+|-..|.|+-
T Consensus 25 r~~Il~aA~~l-f~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 68 (214)
T 2zb9_A 25 RAEVLHAVGEL-LLTEGTAQLTFERVARVSGVSKTTLYKWWPSKG 68 (214)
T ss_dssp HHHHHHHHHHH-HHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHH-HHHhCcccCCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 55555533333 111224566899999999999999999988753
No 159
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=62.89 E-value=1.4 Score=34.10 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|.+.||++..|-..|.|+-
T Consensus 34 ~~~r~~Il~aA~~l-f~~~G~~~~t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 34 SEARARLLGTATRI-FYAEGIHSVGIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp CHHHHHHHHHHHHH-HHHHCSTTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhHHHHHHHHHHHH-HHHhCcccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 34444454433332 111235567899999999999999999998753
No 160
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=62.63 E-value=3.4 Score=33.30 Aligned_cols=52 Identities=8% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCCCCCCCCHHHH-HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 129 SKRQRTKFTQEQK-DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 129 kKR~RTkFT~EQk-ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+++.|...|.+++ +.-.+.+.+.| -+...+.++|+++||++.+|-..|.|+-
T Consensus 9 ~r~~~~~~~r~~Il~aA~~l~~~~G-----~~~~s~~~IA~~aGvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 9 PERRQEPLSRERIVGAAVELLDTVG-----ERGLTFRALAERLATGPGAIYWHITGKA 61 (237)
T ss_dssp -------CCHHHHHHHHHHHHHHTT-----TTTCCHHHHHHHHTSCGGGGGGTCCCHH
T ss_pred CCCCCCccCHHHHHHHHHHHHHhcC-----cccCCHHHHHHHHCCChHHHHHhcCCHH
Confidence 4455566666553 33334445545 4556799999999999999999998754
No 161
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=62.45 E-value=0.97 Score=33.31 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 28 ~~~~t~~~IA~~agvs~~tlY~~F~sK~ 55 (197)
T 3rd3_A 28 FSGVGLNEILQSAGVPKGSFYHYFKSKE 55 (197)
T ss_dssp STTCCHHHHHHHHTCCHHHHTTTCSCHH
T ss_pred cccCCHHHHHHHhCCChhhHHHHcCCHH
Confidence 5566899999999999999999998764
No 162
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=62.28 E-value=0.96 Score=36.72 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASH 189 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~k 189 (209)
..+.+|..|++.|.-+++ | + ..+++|..+||+.++|+..++|-+.|+.
T Consensus 170 ~~~~Lt~~e~~vl~~~~~--g----~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIAV--G----K----TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCCHHHHHHHHHHTT--T----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHc--C----C----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 356799999999876532 2 1 5688999999999999999999888765
No 163
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=62.14 E-value=13 Score=23.81 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.|.|||++|.+- .-+.+++.+|+++..+-|-|+...
T Consensus 12 ~s~eqk~~l~~~--------------lt~~l~~~lg~~~~~v~V~i~e~~ 47 (64)
T 3abf_A 12 RPPEKKRELVRR--------------LTEMASRLLGEPYEEVRVILYEVR 47 (64)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHTTCCGGGEEEEEEEEC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCCCcccEEEEEEEcC
Confidence 478999887764 456688889999999998776553
No 164
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=61.70 E-value=1.5 Score=34.69 Aligned_cols=28 Identities=14% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+-
T Consensus 41 ~~~~s~~~IA~~agvs~~tlY~~F~sKe 68 (231)
T 2zcx_A 41 IREITLTDIAATVGMHKSALLRYFETRE 68 (231)
T ss_dssp STTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 4567899999999999999999998753
No 165
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=61.70 E-value=1.1 Score=34.91 Aligned_cols=28 Identities=14% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+-
T Consensus 31 ~~~~tv~~IA~~agvs~~t~Y~~F~sK~ 58 (231)
T 2qib_A 31 PDEVSIDEIASAAGISRPLVYHYFPGKL 58 (231)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred chhcCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4566899999999999999999998753
No 166
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=61.41 E-value=2.5 Score=28.15 Aligned_cols=36 Identities=3% Similarity=0.074 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 142 DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 142 ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+.|+.+-++.|| ..++||..+||++..|.-|..+++
T Consensus 13 ~~l~~~r~~~gl--------sq~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 13 QLLTKLRKEASL--------SQSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHHTTC--------CHHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCC--------CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 344455555554 357899999999999988887754
No 167
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=61.37 E-value=1.4 Score=32.86 Aligned_cols=47 Identities=11% Similarity=0.204 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|.+.||++.+|-..|.|+-
T Consensus 13 ~~~r~~Il~aa~~l-~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 59 (212)
T 3knw_A 13 EAKRQHILDSGFHL-VLRKGFVGVGLQEILKTSGVPKGSFYHYFESKE 59 (212)
T ss_dssp HHHHHHHHHHHHHH-HHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhhHHHHHHHHHHH-HHHcCCccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 34455555433333 111235667899999999999999998888753
No 168
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=61.34 E-value=2.6 Score=26.56 Aligned_cols=39 Identities=18% Similarity=0.419 Sum_probs=29.3
Q ss_pred CCC--HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecc
Q 048824 135 KFT--QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 135 kFT--~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfh 182 (209)
.++ .++.+.+..+.. .|+ ...++|..+||++.+|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~-~g~--------s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAK-MGY--------TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHH-TTC--------CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHH-cCC--------CHHHHHHHHCcCHHHHHHHHH
Confidence 566 777777766532 332 577899999999999999875
No 169
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=61.06 E-value=1.2 Score=33.46 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
-+...++++|++.||++.+|-..|.|+-.
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 35 FDATSVDEVAEASGIARRTLFRYFPSKNA 63 (207)
T ss_dssp TTTSCHHHHHHHTTSCHHHHHHHCSSTTT
T ss_pred cccCCHHHHHHHhCCCcchHhhhCCCHHH
Confidence 45668999999999999999999988654
No 170
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=60.53 E-value=3.2 Score=30.20 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+.|.++ +.-+.-+...++++|++.||++.+|=..|.|.-
T Consensus 11 ~~tr~~Il~aa~~l-~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 57 (177)
T 3kkc_A 11 QKTKVAIYNAFISL-LQENDYSKITVQDVIGLANVGRSTFYSHYESKE 57 (177)
T ss_dssp HHHHHHHHHHHHHH-TTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTH
T ss_pred HHHHHHHHHHHHHH-HHhCChhHhhHHHHHHHhCCcHhhHHHHcCCHH
Confidence 34556666666665 323345677899999999999999988887753
No 171
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=60.41 E-value=1.9 Score=32.76 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+-|.++ +. -+.-+...++++|.+.||++.+|-..|.|+.
T Consensus 10 ~~~r~~Il~aa~~l-~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~sK~ 57 (220)
T 3lsj_A 10 QQTRHALMSAARHL-MESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMD 57 (220)
T ss_dssp HHHHHHHHHHHHHH-TTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSHH
T ss_pred HhHHHHHHHHHHHH-HHhCCCcccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 34556666666665 33 3345678899999999999999999998854
No 172
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=60.04 E-value=2.3 Score=26.82 Aligned_cols=20 Identities=15% Similarity=0.224 Sum_probs=11.0
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 048824 164 NQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 164 e~fc~eiGv~r~V~KVWfhN 183 (209)
++||..+||++.+|.-|..+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 45555555555555555544
No 173
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=59.80 E-value=1.3 Score=29.04 Aligned_cols=17 Identities=12% Similarity=0.001 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048824 158 QDDVALNQFCNEVGVKR 174 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r 174 (209)
++...+..+|..+||+.
T Consensus 50 ~~~~~l~~ia~~l~~~~ 66 (76)
T 3bs3_A 50 PSLDMLVKVAELLNVDP 66 (76)
T ss_dssp CCHHHHHHHHHHHTSCG
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 44555555555555544
No 174
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=59.75 E-value=1.2 Score=34.67 Aligned_cols=28 Identities=11% Similarity=0.379 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+-
T Consensus 57 ~~~~tv~~IA~~AGvs~~tlY~~F~sKe 84 (214)
T 2guh_A 57 YREITLKDIAEDAGVSAPLIIKYFGSKE 84 (214)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred hhhcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4567899999999999999999887753
No 175
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=58.77 E-value=2.2 Score=31.43 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 141 KDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 141 kekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
++...+.+.+.| -+...++++|++.||++.+|-..|.|+-
T Consensus 17 l~aa~~lf~~~G-----~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 56 (196)
T 3he0_A 17 LAAAEQLIAESG-----FQGLSMQKLANEAGVAAGTIYRYFSDKE 56 (196)
T ss_dssp HHHHHHHHHHHC-----TTTCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhC-----cccCCHHHHHHHhCCCcchHHHhcCCHH
Confidence 344444444445 4566899999999999999999888753
No 176
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=58.51 E-value=1.9 Score=30.05 Aligned_cols=18 Identities=0% Similarity=0.076 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 048824 158 QDDVALNQFCNEVGVKRH 175 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~ 175 (209)
++...+..||..+||+..
T Consensus 49 p~~~~l~~ia~~l~v~~~ 66 (94)
T 2kpj_A 49 PRMGKVQALADYFNINKS 66 (94)
T ss_dssp CCHHHHHHHHHHHTCCTH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 667777778888777654
No 177
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=58.49 E-value=2.6 Score=29.13 Aligned_cols=17 Identities=6% Similarity=-0.027 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048824 158 QDDVALNQFCNEVGVKR 174 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r 174 (209)
++.+.+..||..+||+.
T Consensus 48 ~~~~~~~~i~~~l~v~~ 64 (94)
T 2ict_A 48 LTPEMAIKLSVVIGSSP 64 (94)
T ss_dssp CCHHHHHHHHHHTCSCH
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 45556666666666654
No 178
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=58.28 E-value=0.65 Score=29.86 Aligned_cols=30 Identities=3% Similarity=0.000 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..+++|..+||+..+|+.++++-+.|++-.
T Consensus 15 s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp CSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 447899999999999999999888777653
No 179
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=58.11 E-value=1.4 Score=29.03 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 048824 158 QDDVALNQFCNEVGVKRH 175 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~ 175 (209)
++...+..||..+||+..
T Consensus 48 ~~~~~l~~ia~~l~v~~~ 65 (73)
T 3omt_A 48 PSLETLFDIAEALNVDVR 65 (73)
T ss_dssp CCHHHHHHHHHHHTSCGG
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 556666666666666543
No 180
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=58.07 E-value=1.8 Score=33.90 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+-|.++ +.-+..+...++++|++.||++.+|-..|.|+-
T Consensus 15 ~~~r~~il~aA~~l-~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~~K~ 61 (216)
T 2oi8_A 15 TQVRAEIKDHAWEQ-IATAGASALSLNAIAKRMGMSGPALYRYFDGRD 61 (216)
T ss_dssp HHHHHHHHHHHHHH-HHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHH-HHhcCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34455555433333 111235566899999999999999999988753
No 181
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=57.69 E-value=1.5 Score=34.65 Aligned_cols=28 Identities=7% Similarity=0.252 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-.+|.|+.
T Consensus 64 ~~~~t~~~IA~~aGvs~~t~Y~~F~sKe 91 (245)
T 3aqt_A 64 VDNVGIAEITEGANIGTGTFYNYFPDRE 91 (245)
T ss_dssp GGGCCHHHHHHHTTSCGGGGGGTCSSHH
T ss_pred cccCcHHHHHHHhCCChHHHHHHcCCHH
Confidence 4456799999999999999999998854
No 182
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=57.46 E-value=3 Score=29.96 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 048824 158 QDDVALNQFCNEVGVKRH 175 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~ 175 (209)
++.+.+.+||+-+||+..
T Consensus 63 ~s~~~l~kIa~~L~v~~~ 80 (88)
T 3t76_A 63 VSLTVLLAICEYLNCDFG 80 (88)
T ss_dssp CCHHHHHHHHHHHTCCGG
T ss_pred cCHHHHHHHHHHHCcCHH
Confidence 445555555555555443
No 183
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=57.36 E-value=2.6 Score=28.86 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=9.3
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 048824 164 NQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 164 e~fc~eiGv~r~V~KVWfhN 183 (209)
++||..+||++.+|.-|..+
T Consensus 35 ~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 34444444444444444443
No 184
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=57.27 E-value=1.3 Score=33.23 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCCceeeeeccccc
Q 048824 161 VALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 161 ~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..++++|++.||++.+|-..|.|+.
T Consensus 35 ~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 35 AHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp CCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred CCHHHHHHHhCCChHHHHHHcCCHH
Confidence 6899999999999999999998753
No 185
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=56.84 E-value=0.57 Score=35.02 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.+-++++.+.|.++ |.-+.-+...++++|.+.||++.+|-.+|.|+
T Consensus 17 ~~~R~~Il~aA~~l-f~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sK 62 (212)
T 3loc_A 17 SAKKKAILSAALDT-FSQFGFHGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHTSCHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHH-HHHhCcccCCHHHHHHHHCcCHHHHhhhCCCH
Confidence 34455555533332 11112455679999999999999999999875
No 186
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=56.64 E-value=3.3 Score=27.71 Aligned_cols=23 Identities=9% Similarity=0.136 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCCceeeeecccc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
..++||..+||++..|.-|..+.
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCC
Confidence 34567777777777777766554
No 187
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=56.49 E-value=3.3 Score=27.72 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=14.6
Q ss_pred HHHHHHHhCCCCceeeeecccc
Q 048824 163 LNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.++||..+||+...|.-|..++
T Consensus 30 q~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4566777777777777776654
No 188
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=56.17 E-value=0.54 Score=35.91 Aligned_cols=30 Identities=3% Similarity=0.133 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..+++|..+||+..+|+.+++.-|.++++.
T Consensus 158 s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999988887653
No 189
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=55.90 E-value=16 Score=26.61 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=31.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
.+.| |.|||+++-+- ..+.||+-+|.+...|+|-|.--+.
T Consensus 10 ~~pR---T~EQKralaeE--------------~T~if~evLGcpPgsV~IVi~EV~~ 49 (72)
T 3mb2_B 10 DRPP---DRTRKQAFAAE--------------ASAIFQRVIGTPPGRLQLIIQIVSP 49 (72)
T ss_dssp SSCC---CHHHHHHHHHH--------------HHHHHHHHHCCCTTCCEEEEEECCG
T ss_pred CCCC---CHHHHHHHHHH--------------HHHHHHHHhCCCCCcEEEEEEecCc
Confidence 4455 48999887655 4557999999999999999986554
No 190
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=55.86 E-value=2.1 Score=31.52 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+-
T Consensus 25 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 52 (199)
T 3qbm_A 25 YAGTAISDIMAATGLEKGGIYRHFESKE 52 (199)
T ss_dssp STTCCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred cCcCCHHHHHHHhCCCccHHHHhCCCHH
Confidence 5667899999999999999999998753
No 191
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=55.53 E-value=19 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.|.|||++|.+- .-+.++..+|+++..+-|-|+..
T Consensus 12 rs~eqK~~L~~~--------------it~~l~~~lg~p~~~v~V~i~e~ 46 (72)
T 3mb2_A 12 RSTEQKAELARA--------------LSAAAAAAFDVPLAEVRLIIQEV 46 (72)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHTCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCCCcccEEEEEEEc
Confidence 489999998864 45668888999998888766554
No 192
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=55.39 E-value=2.2 Score=31.45 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+-++++.+-|.++ +. .+ +...++++|++.||++.+|-..|.|+.
T Consensus 14 ~~r~~Il~aA~~l-f~-~~-~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 14 RTRRAILDAAMLV-LA-DH-PTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp HHHHHHHHHHHHH-HT-TC-TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-HH-Hc-CCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4456666655555 22 23 778999999999999999999998753
No 193
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=55.32 E-value=17 Score=22.96 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|.|||++|-+- .-+.+.+.+|++...+-|-|+...
T Consensus 12 s~e~k~~l~~~--------------i~~~l~~~lg~p~~~v~v~i~e~~ 46 (62)
T 1otf_A 12 TDEQKETLIRQ--------------VSEAMANSLDAPLERVRVLITEMP 46 (62)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHTCCGGGCEEEEEEEC
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEEeC
Confidence 78999888764 456678889999988888776543
No 194
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=55.10 E-value=2.1 Score=31.82 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+...++++|.+.||++.+|-..|.|+-
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (220)
T 3lhq_A 32 VSATSLAEIANAAGVTRGAIYWHFKNKS 59 (220)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCceeehhhcCCHH
Confidence 4566899999999999999999998753
No 195
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=54.96 E-value=0.97 Score=35.15 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 58 ~~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 85 (225)
T 2id3_A 58 FDALDLGEIARRAGVGKTTVYRRWGTPG 85 (225)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred cccCCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 4566899999999999999999888753
No 196
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=54.84 E-value=3.9 Score=28.27 Aligned_cols=12 Identities=0% Similarity=-0.061 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHH
Q 048824 158 QDDVALNQFCNE 169 (209)
Q Consensus 158 pd~~~ve~fc~e 169 (209)
++...+..||..
T Consensus 44 p~~~~l~~ia~~ 55 (99)
T 2l49_A 44 PPTDVMMNILQT 55 (99)
T ss_dssp CCHHHHHHHHSS
T ss_pred CCHHHHHHHHHH
Confidence 556666666666
No 197
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=54.20 E-value=2.1 Score=28.87 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCceeeeeccccc
Q 048824 163 LNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
++++|..+||++.+|.-|..+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 57899999999999999998754
No 198
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=54.08 E-value=2.3 Score=32.26 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-.+|.|+.
T Consensus 28 ~~~~s~~~IA~~aGvs~~t~Y~~F~sKe 55 (210)
T 3vib_A 28 IARTSLNEIAQAAGVTRDALYWHFKNKE 55 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHHCcCHHHHHHHCCCHH
Confidence 4567899999999999999999998764
No 199
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=53.78 E-value=2.1 Score=31.78 Aligned_cols=47 Identities=11% Similarity=0.258 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+-++++.+-|.++ +.-+.-+...++++|.+.||++.+|-..|.|+-
T Consensus 10 ~~~r~~Il~aA~~l-f~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 56 (203)
T 3b81_A 10 NNKRTELANKIWDI-FIANGYENTTLAFIINKLGISKGALYHYFSSKE 56 (203)
T ss_dssp HHHHHHHHHHHHHH-HHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHH-HHHcCcccCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 34445555433333 111234567899999999999999999998753
No 200
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=53.37 E-value=1.8 Score=32.78 Aligned_cols=47 Identities=4% Similarity=0.229 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
+.+-++++.+.|.++ +.-+.-+...++++|++.||++.+|-..|.|.
T Consensus 10 ~~~tr~~Il~aa~~l-~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 10 SDEKRNRVYDACLNE-FQTHSFHEAKIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp CHHHHHHHHHHHHHH-HHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CHHHHHHHHHHHHHH-HHHCCcccccHHHHHHHhCCChHHHHHHCCCH
Confidence 445555555544443 22223456689999999999999998888765
No 201
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=53.27 E-value=20 Score=22.67 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|.|||++|-+- .-+.+++.+|++...+-|-|+...
T Consensus 12 s~eqk~~l~~~--------------i~~~l~~~lg~~~~~v~V~i~e~~ 46 (61)
T 2opa_A 12 TDEQKRNLVEK--------------VTEAVKETTGASEEKIVVFIEEMR 46 (61)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEEC
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcCcCeEEEEEEEcC
Confidence 78999888764 456678889999999888877543
No 202
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=52.88 E-value=1.7 Score=31.85 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 27 ~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 54 (195)
T 3ppb_A 27 FHGTSTATIAREAGVATGTLFHHFPSKE 54 (195)
T ss_dssp STTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 4566799999999999999999998764
No 203
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=52.85 E-value=2.7 Score=31.33 Aligned_cols=28 Identities=14% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+-
T Consensus 43 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 70 (212)
T 3nxc_A 43 SQRITTAKLAASVGVSEAALYRHFPSKT 70 (212)
T ss_dssp ---CCHHHHHHHTTSCHHHHHTTCSSHH
T ss_pred hhhcCHHHHHHHhCCChhHHHHHCCCHH
Confidence 4567899999999999999999998753
No 204
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=52.69 E-value=2.7 Score=30.60 Aligned_cols=45 Identities=16% Similarity=0.340 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 140 QKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 140 QkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-++++.+-|.++ +.-+.-+...++++|.+.||++.+|-..|.|+.
T Consensus 5 ~r~~Il~aa~~l-~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (170)
T 3egq_A 5 QSVRIIEAALRL-YMKKPPHEVSIEEIAREAKVSKSLIFYHFESKQ 49 (170)
T ss_dssp HHHHHHHHHHHH-HTTSCGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHH-HHhcCCccCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 345555544444 222234567899999999999999998888753
No 205
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=52.54 E-value=1.3 Score=33.40 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 29 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 56 (216)
T 3f0c_A 29 LCKTTMNEIASDVGMGKASLYYYFPDKE 56 (216)
T ss_dssp SSSCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4556799999999999999999998853
No 206
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=52.38 E-value=4 Score=27.41 Aligned_cols=20 Identities=15% Similarity=0.519 Sum_probs=10.5
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 048824 164 NQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 164 e~fc~eiGv~r~V~KVWfhN 183 (209)
++||..+||++..|.-|..+
T Consensus 29 ~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 29 SELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHcC
Confidence 44555555555555555544
No 207
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=52.32 E-value=1.9 Score=32.35 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|-|+.
T Consensus 27 ~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 27 IARVSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp GGGCCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred hhhccHHHHHHHhCCCchhhheeCCCHH
Confidence 4556899999999999999999988753
No 208
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=52.08 E-value=5.8 Score=26.58 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..||.+.+..+.. +.|| ..++||..+||+..+|.-|-.+.+
T Consensus 9 ~~~~g~~lr~~R~---~~gl--------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRK---KLSL--------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHH---HTTC--------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHH---HcCC--------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 5788888777664 4554 468899999999999999987754
No 209
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=51.93 E-value=2.4 Score=32.24 Aligned_cols=28 Identities=7% Similarity=0.219 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+-
T Consensus 27 ~~~~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 27 LEGASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4556799999999999999999998753
No 210
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=51.89 E-value=1.5 Score=32.53 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+-++++.+.|.++ +.-+.-+...++++|.+.||++.+|-.+|.|+-
T Consensus 3 ~~r~~Il~aa~~l-~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 48 (189)
T 3geu_A 3 AMKDKIIDNAITL-FSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKK 48 (189)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHTTCCHHHHTTTCSSHH
T ss_pred hHHHHHHHHHHHH-HHHcCcccCCHHHHHHHhCCCHHHHHHHhCCHH
Confidence 3445555433333 111124456899999999999999999998753
No 211
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=51.62 E-value=1.2 Score=33.51 Aligned_cols=28 Identities=11% Similarity=0.331 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 28 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (216)
T 3s5r_A 28 IAATTMAEIAASVGVNPAMIHYYFKTRD 55 (216)
T ss_dssp TTTCCHHHHHHTTTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 5566899999999999999999998754
No 212
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=51.59 E-value=3 Score=30.34 Aligned_cols=45 Identities=9% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 140 QKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 140 QkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-++++.+-|.++ +.-+.-+...++++|++.||++.+|-..|.|+-
T Consensus 9 ~r~~Il~aa~~l-~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (188)
T 3qkx_A 9 LAEQIFSATDRL-MAREGLNQLSMLKLAKEANVAAGTIYLYFKNKD 53 (188)
T ss_dssp HHHHHHHHHHHH-HHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSHH
T ss_pred HHHHHHHHHHHH-HHhcCcccCCHHHHHHHhCCCcchHHHHcCCHH
Confidence 344444433333 222235667899999999999999988888753
No 213
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=51.57 E-value=2.5 Score=31.76 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-.+|.|+-
T Consensus 26 ~~~~t~~~IA~~agvs~~tlY~~F~sK~ 53 (199)
T 2o7t_A 26 HDSLTMENIAEQAGVGVATLYRNFPDRF 53 (199)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4566899999999999999999998753
No 214
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=51.57 E-value=6.5 Score=27.59 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=21.8
Q ss_pred cccccccccccCCCCccccccc--ccccccccc
Q 048824 38 HANDGCCEFMPRADDSLTCAAC--GCHRNFHRR 68 (209)
Q Consensus 38 ~~~DGC~Efm~~~~~~l~CaaC--gCHRnFHr~ 68 (209)
..=|=|++|| ....|+|..| .||+-=+.+
T Consensus 36 t~C~~C~~~l--~~qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 36 GWCDLCGREV--LRQALRCANCKFTCHSECRSL 66 (72)
T ss_dssp CBCTTTSSBC--SSCCEECTTSSCEECTGGGGG
T ss_pred cchhhhhHHH--HhCcCccCCCCCeechhhhcc
Confidence 4457899999 6779999999 567655443
No 215
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=51.56 E-value=2.4 Score=31.93 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 29 ~~~~s~~~IA~~agvs~~t~Y~~F~sK~ 56 (212)
T 2ras_A 29 GAGLTLSELAARAGISQANLSRYFETRE 56 (212)
T ss_dssp SSCCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred cccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4556899999999999999999998854
No 216
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=51.33 E-value=35 Score=25.48 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGVKR 174 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv~r 174 (209)
.|.++|++|++.|++.|...--. --+-+..++..+...+|...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 46789999999999977663211 11356778888888888654
No 217
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=51.29 E-value=0.87 Score=35.56 Aligned_cols=47 Identities=4% Similarity=0.011 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
+++..|++.|.-.+ -.....+++|..+||+..+|+.+++.-+.++++
T Consensus 187 ~L~~~~r~vl~l~~---------~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIF---------YEELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHH---------TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---------hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 46777777776532 122367899999999999999999988877764
No 218
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=51.18 E-value=1.5 Score=32.14 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 28 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 55 (196)
T 3col_A 28 PAGVSTTKVAKRVGIAQSNVYLYFKNKQ 55 (196)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred cccCCHHHHHHHhCCcHHHHHHHhCCHH
Confidence 4566899999999999999999998753
No 219
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=51.15 E-value=2.8 Score=35.18 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
....+|..|++.|.-+++ | + ..+++|..+||+.++|+..+.|-+.|+.-
T Consensus 194 ~~~~Lt~re~~vl~~~~~--G----~----s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 194 SNMPLSQREYDIFHWMSR--G----K----TNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCCHHHHHHHHHHHT--T----C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCHHHHHHHHHHHc--C----C----CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 346799999999887753 3 2 56889999999999999999998888764
No 220
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=51.12 E-value=20 Score=27.07 Aligned_cols=54 Identities=6% Similarity=0.027 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHH-hCcccCCCCHHHH-HHHHHH------hCCCCceeeeecccccccCCC
Q 048824 132 QRTKFTQEQKDKMLEFAER-IGWRMQRQDDVAL-NQFCNE------VGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk-~GW~iqkpd~~~v-e~fc~e------iGv~r~V~KVWfhNnR~k~kk 190 (209)
.+.+++.++++.+.++.+. .+| ...++ ++|..+ +.++..+|.-|++..+..-.+
T Consensus 80 ~~~~~~~~~~~~I~~~~~~~~~~-----s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~ 141 (159)
T 2k27_A 80 KPKVATPKVVEKIGDYKRQNPTM-----FAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFN 141 (159)
T ss_dssp CCCCCCTTHHHHHHHHHHHCSSS-----CHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCHHHHHHHHHHHHHCccc-----hHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCcc
Confidence 3567899999988886554 222 22233 333322 258899999999887765443
No 221
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=51.00 E-value=4.1 Score=27.43 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=19.0
Q ss_pred cccccccccccCCCCcccccccc--cccc
Q 048824 38 HANDGCCEFMPRADDSLTCAACG--CHRN 64 (209)
Q Consensus 38 ~~~DGC~Efm~~~~~~l~CaaCg--CHRn 64 (209)
.-=|=|++|| ....|+|..|+ ||+-
T Consensus 23 t~C~~C~~~i--~kqg~kC~~C~~~cH~k 49 (59)
T 1rfh_A 23 GWCDLCGREV--LRQALRCANCKFTCHSE 49 (59)
T ss_dssp EECTTTCSEE--CSCCEECTTTSCEECHH
T ss_pred eEchhcchhh--hhCccEeCCCCCeEehh
Confidence 3457899999 67799999984 5543
No 222
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=50.68 E-value=4.8 Score=29.08 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 048824 158 QDDVALNQFCNEVGVKRH 175 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~ 175 (209)
++...+..||..+||+..
T Consensus 61 p~~~~l~~ia~~l~v~~~ 78 (114)
T 3vk0_A 61 IALSNIEKMAAALGVAAY 78 (114)
T ss_dssp CCHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHhCCCHH
Confidence 555556666666665543
No 223
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=50.67 E-value=3.3 Score=32.50 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
..+|.-+.+.|.-+++.+ ..+++|++++++.++|++.+.|=+.|+.-+
T Consensus 148 ~~LT~rE~~vL~~l~~g~----------s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEGL----------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TTSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHCCC----------CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 469999999988776542 467899999999999999999988887543
No 224
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=50.65 E-value=21 Score=24.48 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.|.|||++|-+- .-+.+++.+|+++..+-|.|+..
T Consensus 12 rs~eqK~~L~~~--------------it~~l~~~lg~p~~~v~V~i~E~ 46 (76)
T 3ej9_A 12 RTDEQKRALSAG--------------LLRVISEATGEPRENIFFVIREG 46 (76)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHHCcCcccEEEEEEEe
Confidence 479999998764 55678888999998888766544
No 225
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=50.62 E-value=13 Score=28.84 Aligned_cols=34 Identities=6% Similarity=0.403 Sum_probs=25.9
Q ss_pred cccCCCC--HHHHHHHHHHhCCCCceeeeecccccc
Q 048824 153 WRMQRQD--DVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 153 W~iqkpd--~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
+|+.+.. .+..+.++.++|++...++.|.-.+|+
T Consensus 60 ~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 60 FKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp EECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCB
T ss_pred EEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCC
Confidence 4555533 456788999999999999999776664
No 226
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=50.53 E-value=3.6 Score=31.10 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=.+|.|+-
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F~sKe 56 (210)
T 2xdn_A 29 VARTTLADIAELAGVTRGAIYWHFNNKA 56 (210)
T ss_dssp STTCCHHHHHHHHTCCTTHHHHHCSSHH
T ss_pred cccCcHHHHHHHHCCChHHHHHHhCCHH
Confidence 4567899999999999999999998753
No 227
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=50.45 E-value=2.2 Score=34.91 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+-++++.+-|.++ +.-+.-+...++++|.+.||++.+|-.+|.|+-
T Consensus 41 ~tr~~Il~AA~~l-f~e~G~~~~S~~~IA~~AGVs~~tlY~hF~sKe 86 (273)
T 3c07_A 41 QTRALILETAMRL-FQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKE 86 (273)
T ss_dssp HHHHHHHHHHHHH-HHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-HHhCCccccCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 3445555433333 212234566899999999999999999997753
No 228
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=50.35 E-value=3.4 Score=30.14 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhN 183 (209)
-+...++++|++.||++.+|-..|.|
T Consensus 24 ~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 24 YHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp TTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred ccccCHHHHHHHHCCCchhHHHHccc
Confidence 45668999999999999999999987
No 229
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=50.10 E-value=3.1 Score=31.73 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 140 QKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 140 QkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-++++.+.|.++ |.-+.-+...++++|.+.||++.+|=..|.|+.
T Consensus 12 ~r~~Il~aA~~l-f~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe 56 (210)
T 2wui_A 12 TRDGILDAAERV-FLEKGVGTTAMADLADAAGVSRGAVYGHYKNKI 56 (210)
T ss_dssp HHHHHHHHHHHH-HHHSCTTTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHH-HHHcCccccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 345555444433 222235567899999999999999999998754
No 230
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=49.39 E-value=25 Score=25.39 Aligned_cols=36 Identities=3% Similarity=0.057 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.|.|||++|-+- .-+.|.+.+|++...+-|.|+...
T Consensus 68 ~~~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 1uiz_A 68 IGGPQNKSYTKL--------------LCDILTKQLNIPANRVYINYYDLN 103 (115)
T ss_dssp CSHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcceEEEEEEECC
Confidence 469999887763 455688899999999999998764
No 231
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=49.30 E-value=1.8 Score=32.76 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 33 ~~~~s~~~IA~~agvs~~t~Y~~F~sKe 60 (221)
T 3c2b_A 33 EKALTTSGLARAANCSKESLYKWFGDRD 60 (221)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 4556899999999999999999998854
No 232
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=48.80 E-value=26 Score=25.13 Aligned_cols=36 Identities=6% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.|.|||++|-+- .-+.|.+.+|++...+-|.|+...
T Consensus 67 ~~~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 102 (113)
T 1hfo_A 67 IEPSRNRDHSAK--------------LFDHLNTKLGIPKNRMYIHFVNLN 102 (113)
T ss_dssp CSHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcCeEEEEEEECC
Confidence 369999887763 445688999999999999998764
No 233
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=48.79 E-value=26 Score=22.89 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.|.|||++|-+- .-+.+++.+|++...+-|-|+-.
T Consensus 11 rs~eqk~~L~~~--------------it~~~~~~lg~p~~~v~V~i~e~ 45 (65)
T 3ry0_A 11 RSPQEVAALGEA--------------LTAAAHETLGTPVEAVRVIVEET 45 (65)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEEc
Confidence 479999998764 45667888999998887766543
No 234
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=48.66 E-value=4.8 Score=28.78 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHHHhCCCCc
Q 048824 157 RQDDVALNQFCNEVGVKRH 175 (209)
Q Consensus 157 kpd~~~ve~fc~eiGv~r~ 175 (209)
.++...+..||..+||+..
T Consensus 48 ~p~~~~l~~la~~l~v~~~ 66 (114)
T 3op9_A 48 KPDIEKLIRLATYFHLSID 66 (114)
T ss_dssp CCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3667777777777777653
No 235
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=48.20 E-value=1.6 Score=32.75 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCCceeeeecccc
Q 048824 161 VALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 161 ~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
..++++|++.||++.+|-..|.|+
T Consensus 36 ~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 36 ASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CCHHHHHHHhCCchHHHHHHCCCH
Confidence 589999999999999998888775
No 236
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=47.92 E-value=0.42 Score=35.70 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+-++++.+.|.++ +.-+..+...++++|++.||++.+|-..|.|+-
T Consensus 14 ~~r~~Il~aa~~l-~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 59 (215)
T 3e7q_A 14 QRKALLIEATLAC-LKRHGFQGASVRKICAEAGVSVGLINHHYDGKD 59 (215)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHH-HHHcCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3345555543333 111124566899999999999999999988753
No 237
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=47.85 E-value=5.5 Score=26.98 Aligned_cols=44 Identities=7% Similarity=0.060 Sum_probs=25.5
Q ss_pred CCCCCCCCCHHHHHHHHH----HHHHhCccc---CCCCHHHHHHHHHHhCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLE----FAERIGWRM---QRQDDVALNQFCNEVGVKR 174 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~----faEk~GW~i---qkpd~~~ve~fc~eiGv~r 174 (209)
..|.+..+|++++.+... ...+ |.. ..++...+..||..+||+.
T Consensus 17 ~~R~~~gltq~elA~~~gis~~~is~--~E~G~~~~p~~~~l~~ia~~l~v~~ 67 (78)
T 3qq6_A 17 QYRKEKGYSLSELAEKAGVAKSYLSS--IERNLQTNPSIQFLEKVSAVLDVSV 67 (78)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHH--HHTTSCCCCBHHHHHHHHHHHTCCH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHH--HHcCCCCCCCHHHHHHHHHHHCcCH
Confidence 345555677777665542 1111 222 2367778888888888764
No 238
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=47.81 E-value=3.4 Score=31.09 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|=..|.|+.
T Consensus 27 ~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe 54 (204)
T 3anp_C 27 FQETTATEIAKAAHVSRGTFFNYYPYKE 54 (204)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHCSSTH
T ss_pred cccccHHHHHHHcCCchHHHHHHcCCHH
Confidence 4567899999999999999998888753
No 239
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=47.79 E-value=22 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~G 152 (209)
..++.|..||.|+-+.|.++.++.|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4577899999999999999999987
No 240
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=47.72 E-value=2.4 Score=32.26 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
+-++++.+-|.++ |.-+.-+...++++|.+.||++.+|-..|.|+
T Consensus 12 ~~r~~Il~aA~~l-f~~~G~~~~s~~~IA~~aGvsk~tlY~hF~sK 56 (200)
T 2hyj_A 12 ATRGRILGRAAEI-ASEEGLDGITIGRLAEELEMSKSGVHKHFGTK 56 (200)
T ss_dssp HHHHHHHHHHHHH-HHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred ccHHHHHHHHHHH-HHHcCcccCCHHHHHHHhCCChHHHHHHcCCH
Confidence 3445555433333 11123456689999999999999999999775
No 241
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=47.70 E-value=8.2 Score=28.75 Aligned_cols=47 Identities=6% Similarity=0.027 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh-CcccCCCCHHHHHHHHHHh--------C--CCCceeeeecccccc
Q 048824 132 QRTKFTQEQKDKMLEFAERI-GWRMQRQDDVALNQFCNEV--------G--VKRHVLKVWMHNNKN 186 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~-GW~iqkpd~~~ve~fc~ei--------G--v~r~V~KVWfhNnR~ 186 (209)
.+.+++.++++.+.++.+.. +| . ..+++.++ | ++..+|.-|++....
T Consensus 87 ~~~~~~~~~~~~I~~~~~~~~~~-----s---~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 87 KPKVATPKVVEKIAEYKRQNPTM-----F---AWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CCSSSCHHHHHHHHHHHHHCTTC-----C---HHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCCHHHHHHHHHHHHhCcch-----h---HHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 35678999999999875542 22 2 23344444 5 788999999986654
No 242
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=47.48 E-value=2.6 Score=30.78 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+-
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (194)
T 2g7s_A 26 YNSFSYADISQVVGIRNASIHHHFPSKS 53 (194)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCchHHHHHcCCHH
Confidence 4556899999999999999999888753
No 243
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=47.37 E-value=28 Score=25.39 Aligned_cols=36 Identities=0% Similarity=0.005 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.|.|||++|-+- .-+.|.+.+|++...+-|-|+...
T Consensus 68 ~~~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (119)
T 2os5_A 68 LSADDNIRHTQK--------------ITQFCQDTLKLPKDKVIITYFDLQ 103 (119)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEECC
Confidence 469999887763 445688899999999999998765
No 244
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=47.25 E-value=0.82 Score=35.50 Aligned_cols=27 Identities=0% Similarity=0.225 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 159 DDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 159 d~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+...++++|.+.||++.+|-..|.|+-
T Consensus 49 ~~~s~~~IA~~aGvs~~tlY~~F~sK~ 75 (226)
T 2pz9_A 49 AGARVDRIAKQARTSKERVYAYFRSKE 75 (226)
T ss_dssp HHCCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred ccCcHHHHHHHHCCChHHHHHHcCCHH
Confidence 456799999999999999999987753
No 245
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=47.19 E-value=5.6 Score=31.33 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=32.8
Q ss_pred CCCCCCCCCHHHH-HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 129 SKRQRTKFTQEQK-DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 129 kKR~RTkFT~EQk-ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+++.|...|.+++ +...+.+.+.| .+...++++|.++||++.+|-..|-|+.
T Consensus 18 ~~~~r~~~tr~~Il~aA~~l~~~~G-----~~~~s~~~IA~~aGvs~~tlY~~F~~K~ 70 (211)
T 3fiw_A 18 YFQGMTKMNRETVITEALDLLDEVG-----LDGVSTRRLAKRLGVEQPSLYWYFRTKR 70 (211)
T ss_dssp ------CCCHHHHHHHHHHHHHHHC-----GGGCCHHHHHHHHTSCTHHHHTTCSSHH
T ss_pred CcccccccCHHHHHHHHHHHHHhcC-----cccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 4455566666653 33344444445 4456799999999999999999998754
No 246
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=47.06 E-value=2.3 Score=32.06 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|.+.||++.+|=..|.|+
T Consensus 30 ~~~~s~~~IA~~aGvs~~tlY~~F~sK 56 (197)
T 2hyt_A 30 YADTSMDDLTAQASLTRGALYHHFGDK 56 (197)
T ss_dssp TTTCCHHHHHHHHTCCTTHHHHHHSSH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 456689999999999999999888775
No 247
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=46.99 E-value=6.2 Score=27.03 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHHHHH--hCccc--CCCCHHHHHHHHHHhCCCCcee
Q 048824 131 RQRTKFTQEQKDKMLEFAER--IGWRM--QRQDDVALNQFCNEVGVKRHVL 177 (209)
Q Consensus 131 R~RTkFT~EQkekM~~faEk--~GW~i--qkpd~~~ve~fc~eiGv~r~V~ 177 (209)
|....+|++++.++...... ..|.. ..++...+..||..+||+..-|
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l 72 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGK 72 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSST
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 34445677666554321000 00211 2377888888999998887654
No 248
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=46.78 E-value=3.8 Score=30.99 Aligned_cols=28 Identities=4% Similarity=0.141 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=.+|.|+-
T Consensus 27 ~~~~s~~~IA~~aGvsk~tlY~~F~sKe 54 (203)
T 3cdl_A 27 FEITSMDRIAARAEVSKRTVYNHFPSKE 54 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHTTSSSHH
T ss_pred chhcCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4566899999999999999999998764
No 249
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=46.64 E-value=5.3 Score=25.66 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=10.5
Q ss_pred HHHHHHhC--CCCceeeeeccc
Q 048824 164 NQFCNEVG--VKRHVLKVWMHN 183 (209)
Q Consensus 164 e~fc~eiG--v~r~V~KVWfhN 183 (209)
++||..+| |++.+|.-|..+
T Consensus 25 ~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 25 HGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHT
T ss_pred HHHHHHHCCcCCHHHHHHHHCC
Confidence 44555555 555555555444
No 250
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=46.47 E-value=1.7 Score=31.84 Aligned_cols=28 Identities=7% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-.+|.|+-
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (195)
T 3pas_A 26 FSATSVGKIAKAAGLSPATLYIYYEDKE 53 (195)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred hHhcCHHHHHHHhCCCchHHHHHcCCHH
Confidence 3456799999999999999999998853
No 251
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=46.02 E-value=1.2 Score=33.05 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-.+|.|+-
T Consensus 32 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 59 (191)
T 4aci_A 32 YEGATVRRLEEATGKSRGAIFHHFGDKE 59 (191)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred cccCCHHHHHHHHCCCchHHHHHCCCHH
Confidence 4556899999999999999999998753
No 252
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=45.86 E-value=3.6 Score=28.94 Aligned_cols=46 Identities=15% Similarity=0.367 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.+|.++.+++.++...+| ..+...+.+||.++||++.+|.-.+.+-
T Consensus 10 ~~~~~~~~~IL~~L~~~~----~~~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 10 SIYQDQEQRILKFLEELG----EGKATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHC----SSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC----CCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 356677677777666653 2334678999999999999887665543
No 253
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=45.79 E-value=1.7 Score=32.44 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 26 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 53 (195)
T 3frq_A 26 PIEFTLSGVAKEVGLSRAALIQRFTNRD 53 (195)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3456799999999999999998888753
No 254
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=45.31 E-value=2.1 Score=34.25 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
.+-++++.+.|.++ |.-+..+...++++|++.||++.+|-..|.|+-.
T Consensus 47 ~~tr~~Il~AA~~l-f~e~G~~~~Ti~~IA~~AGvs~~t~Y~yF~sKe~ 94 (260)
T 2of7_A 47 TRTREAIRAATYGL-IRQQGYEATTVEQIAERAEVSPSTVLRYFPTRED 94 (260)
T ss_dssp HHHHHHHHHHHHHH-HHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHHH-HHHhCcccccHHHHHHHhCCChHHHHHHcCCHHH
Confidence 33444555433333 1112356678999999999999999999988644
No 255
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=45.22 E-value=3.4 Score=31.66 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
..+|.-+.+.|.-+++.. ..+++|++++++.++|++...|=+.|+.-
T Consensus 153 ~~Lt~rE~~vl~~l~~g~----------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL----------PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC----------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCC----------CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 469999999998886642 36889999999999999999988888753
No 256
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=45.00 E-value=3.9 Score=33.48 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 133 RTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
...+|..|++.|.-+++-. ..+++|..+||+.++|+.-+.|-+.|+.-
T Consensus 173 ~~~Lt~re~~vl~~~~~G~----------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 173 NVRLTARETEMLKWTAVGK----------TYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp GCCCCHHHHHHHHHHHTTC----------CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcCC----------CHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 4567777777776654321 46789999999999999999888777653
No 257
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=44.79 E-value=4.1 Score=30.42 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|-|+.
T Consensus 25 ~~~~s~~~IA~~aGvs~~tlY~~F~sKe 52 (178)
T 4hku_A 25 MEKTTLYDIASNLNVTHAALYKHYRNKE 52 (178)
T ss_dssp GGGCCHHHHHHHTTSCGGGGGGTCSSHH
T ss_pred cccccHHHHHHHhCcCHhHHHHHCCCHH
Confidence 4556799999999999999999998764
No 258
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.53 E-value=4.9 Score=31.27 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
..+|..+.+.|.-+++ |+ ..+++|.+++++.++|++...|=|.|+.-
T Consensus 158 ~~Lt~rE~~vL~~l~~--g~--------s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 158 AKLTKREQQIIKLLGS--GA--------SNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HTSCHHHHHHHHHHTT--TC--------CHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred ccCCHHHHHHHHHHHc--CC--------CHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 3599999999988765 21 46789999999999999999998888754
No 259
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=44.41 E-value=2.7 Score=30.86 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+-
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (183)
T 1zk8_A 26 VQEVTLASLAQTLGVRSPSLYNHVKGLQ 53 (183)
T ss_dssp GGGCCHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred ccccCHHHHHHHcCCCchHHHHHcCCHH
Confidence 4556899999999999999999998753
No 260
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=44.32 E-value=1.9 Score=31.73 Aligned_cols=28 Identities=7% Similarity=0.201 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-.+|.|+.
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMISYHFGGKE 53 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHSCHHH
T ss_pred cccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4566899999999999999999998753
No 261
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=44.21 E-value=6.1 Score=28.95 Aligned_cols=28 Identities=4% Similarity=0.103 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+-
T Consensus 25 ~~~~s~~~IA~~agvs~~tly~~F~sK~ 52 (180)
T 2fd5_A 25 AVEPSVGEVMGAAGLTVGGFYAHFQSKD 52 (180)
T ss_dssp TTSCCHHHHHHHTTCCGGGGGGTCSCHH
T ss_pred cccCCHHHHHHHhCCCccHHHHHCCCHH
Confidence 4456789999999999999999998753
No 262
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=44.10 E-value=3.4 Score=30.80 Aligned_cols=31 Identities=13% Similarity=0.345 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccccccC
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNKNAS 188 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~ 188 (209)
-+...++++|++.||++.+|-..|.|+-.-+
T Consensus 25 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll 55 (195)
T 2dg7_A 25 YDNVTVTDIAERAGLTRRSYFRYFPDKREVL 55 (195)
T ss_dssp GGGCCHHHHHHHTTCCHHHHHHHCSSTTGGG
T ss_pred ccccCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 4566899999999999999999998865543
No 263
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=44.03 E-value=5.8 Score=29.05 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048824 158 QDDVALNQFCNEVGVKR 174 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r 174 (209)
++.+.+..||..+||+.
T Consensus 54 ~s~~~~~kla~~lgvs~ 70 (104)
T 3trb_A 54 ITADTALRLAKFFGTTP 70 (104)
T ss_dssp CCHHHHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 56667777777777763
No 264
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=43.90 E-value=6.4 Score=28.67 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHhCCCCc
Q 048824 158 QDDVALNQFCNEVGVKRH 175 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~ 175 (209)
++...+..||..+||+..
T Consensus 52 p~~~~l~~ia~~l~v~~~ 69 (126)
T 3ivp_A 52 PSLQVLYDLVSLLNVSVD 69 (126)
T ss_dssp CCHHHHHHHHHHHTCCSH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 666777777777777654
No 265
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=43.68 E-value=3.9 Score=30.65 Aligned_cols=27 Identities=7% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|++.||++.+|-.+|.|+
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~F~sK 48 (185)
T 2yve_A 22 LETLSYDSLAEATGLSKSGLIYHFPSR 48 (185)
T ss_dssp STTCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred hhhccHHHHHHHhCCChHHHHHhCcCH
Confidence 456689999999999999999999875
No 266
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=43.64 E-value=0.2 Score=39.44 Aligned_cols=24 Identities=4% Similarity=-0.085 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAER 150 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk 150 (209)
.+.||.||.||++|++.|++.++.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~ 157 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQA 157 (169)
T ss_dssp -------EEEECCCCEECCSSCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhC
Confidence 456899999999999999985443
No 267
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=43.53 E-value=3.8 Score=30.96 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=..|.|+.
T Consensus 32 ~~~~s~~~IA~~agvs~~tlY~~F~sKe 59 (204)
T 2ibd_A 32 LRATTVRDIADAAGILSGSLYHHFDSKE 59 (204)
T ss_dssp STTCCHHHHHHHTTSCHHHHHHHCSCHH
T ss_pred chhcCHHHHHHHhCCCchhHHHhcCCHH
Confidence 4567899999999999999999988753
No 268
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=43.46 E-value=6.8 Score=27.39 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048824 158 QDDVALNQFCNEVGVKR 174 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r 174 (209)
++...+..||..+||+.
T Consensus 42 p~~~~l~~ia~~l~v~~ 58 (111)
T 1b0n_A 42 PSIQFLEKVSAVLDVSV 58 (111)
T ss_dssp CCHHHHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 55666666666666654
No 269
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=43.05 E-value=1 Score=35.58 Aligned_cols=28 Identities=11% Similarity=0.360 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 36 ~~~~t~~~IA~~aGvs~~tlY~~F~sKe 63 (251)
T 3npi_A 36 FSDAKLEAIAKKSGMSKRMIHYHFGDKR 63 (251)
T ss_dssp HHHCCHHHHHHHHCCCHHHHHHHHCSHH
T ss_pred ccccCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 3456799999999999999999988764
No 270
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=42.94 E-value=17 Score=27.98 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCceeeeecccccccC
Q 048824 161 VALNQFCNEVGVKRHVLKVWMHNNKNAS 188 (209)
Q Consensus 161 ~~ve~fc~eiGv~r~V~KVWfhNnR~k~ 188 (209)
...+.+|++.||+...|+-||...|-..
T Consensus 65 KLm~aY~er~Gl~~~~irFlFDG~rI~~ 92 (115)
T 3kyd_D 65 KLKESYCQRQGVPMNSLRFLFEGQRIAD 92 (115)
T ss_dssp HHHHHHHHHHTCCTTSEEEEETTEECCT
T ss_pred HHHHHHHHHhCCChhhEEEEECCeECCC
Confidence 3455677778899999999998877543
No 271
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=42.92 E-value=7.2 Score=27.95 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=11.1
Q ss_pred HHHHHHhCCCCceeeeecccc
Q 048824 164 NQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 164 e~fc~eiGv~r~V~KVWfhNn 184 (209)
++||..+||++..|.-|-.+.
T Consensus 45 ~elA~~~gis~~~is~iE~G~ 65 (99)
T 3g5g_A 45 EDLAYKSNLDRTYISGIERNS 65 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 455555555555555555443
No 272
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=42.68 E-value=3.7 Score=31.29 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F~sKe 56 (219)
T 2w53_A 29 VARTTLEMIGARAGYTRGAVYWHFKNKS 56 (219)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred cccCCHHHHHHHhCCCchHHhhcCCCHH
Confidence 4567899999999999999999998753
No 273
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=42.64 E-value=3.2 Score=30.85 Aligned_cols=28 Identities=7% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=.+|.|+.
T Consensus 21 ~~~~s~~~IA~~agvsk~t~Y~~F~sK~ 48 (190)
T 3vpr_A 21 YEATSVQDLAQALGLSKAALYHHFGSKE 48 (190)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4556799999999999999999888754
No 274
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=42.23 E-value=5.6 Score=30.65 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+...++++|++.||++.+|-..|.|+-
T Consensus 46 ~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 73 (217)
T 3hta_A 46 IAGLSHRTVAAEADVPLGSTTYHFATLD 73 (217)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHcCCCcchhhhcCCCHH
Confidence 4566899999999999999999888753
No 275
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=42.10 E-value=4 Score=33.73 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..+-++++.+.|.++ +.-+.-+...++++|.+.||++.+|-.+|.|+.
T Consensus 118 ~~~~r~~il~aa~~l-~~~~G~~~~T~~~IA~~AGvs~gtlY~yF~sKe 165 (311)
T 4ich_A 118 QSEARRRILETAWRL-IARRGYHNVRIHDIASELGTSNATIHYHFPSKK 165 (311)
T ss_dssp CHHHHHHHHHHHHHH-HHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhhHHHHHHHHHHHH-HHHcCCccCCHHHHHHHhCCCchhHHHhCCCHH
Confidence 344455555433332 111123456899999999999999999998753
No 276
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=41.74 E-value=5.6 Score=28.03 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=14.2
Q ss_pred HHHHHHHhCCCCceeeeecccc
Q 048824 163 LNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.++||..+||++.+|.-|-.+.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~ 67 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 4566777777777776666543
No 277
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=41.61 E-value=28 Score=25.11 Aligned_cols=36 Identities=6% Similarity=0.184 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.|.|||++|-+- .-+.|.+.+|++...+-|.|+...
T Consensus 68 ~t~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (115)
T 2xcz_A 68 LDGSRTQEVSEL--------------VCGHIEQNLGIPADRIYIGFEDVP 103 (115)
T ss_dssp CCTTHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEECC
Confidence 368999887763 445678899999999999988764
No 278
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=41.34 E-value=5.1 Score=30.22 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCceeeeeccccc
Q 048824 160 DVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 160 ~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
...++++|.+.||++.+|-..|.|+.
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 36899999999999999999998753
No 279
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=41.21 E-value=2.4 Score=31.28 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-.+|.|+.
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (156)
T 3ljl_A 32 YDKMSYTTLSQQTGVSRTGISHHFPKKT 59 (156)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHHHCSSTH
T ss_pred hhhcCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 3456799999999999999999998854
No 280
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=41.07 E-value=2.3 Score=34.63 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=34.2
Q ss_pred CCCCCCCCHHHH-HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 130 KRQRTKFTQEQK-DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 130 KR~RTkFT~EQk-ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
++.|...|.+++ +.-.+.+.+.| -+...+.++|.++||++.+|-..|.|+-
T Consensus 13 r~~r~~~tr~~Il~AA~~l~~e~G-----~~~~S~~~IA~~aGvs~~tlY~hF~sK~ 64 (243)
T 2g7l_A 13 RPAKPALSRRWIVDTAVALMRAEG-----LEKVTMRRLAQELDTGPASLYVYVANTA 64 (243)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHC-----SSSCCHHHHHHHTTSCHHHHTTTCCSHH
T ss_pred CCCCcccCHHHHHHHHHHHHHhcC-----chhcCHHHHHHHHCCChhHHHHHcCCHH
Confidence 444556676653 33344444555 4556799999999999999999898754
No 281
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=40.80 E-value=3.7 Score=30.30 Aligned_cols=27 Identities=0% Similarity=0.174 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|.+.||++.+|=..|.|+
T Consensus 20 y~~~s~~~Ia~~agvskgtlY~~F~sK 46 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFYFHFKSK 46 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CccCCHHHHHHHhCCCcHHHHHHcCCH
Confidence 456679999999999999998888764
No 282
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=40.76 E-value=2.8 Score=30.95 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 29 ~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 56 (204)
T 3eup_A 29 LAGTSLTDLTEATNLTKGSIYGNFENKE 56 (204)
T ss_dssp HHHCCHHHHHHHHTCCHHHHTTTSSSHH
T ss_pred cccCCHHHHHHHhCCCcHHHHHhCCCHH
Confidence 3455799999999999999999988754
No 283
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=40.75 E-value=5.8 Score=31.31 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNA 187 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k 187 (209)
++++++.+.+.+... ....+.++|..+||++.+|.-|+.+++.+
T Consensus 142 ~~~~~~~~~i~~l~~---------~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 142 KLTKAEWEQAGRLLA---------QGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHH---------cCCCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 456777666555321 22367889999999999999999887653
No 284
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=40.53 E-value=10 Score=27.92 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+|.+++..+. +++|| ..++||..+||+..+|.-|-.+++
T Consensus 70 ~~~~~~l~~~R---~~~gl--------sq~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVR---KKLSL--------TQKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHH---HHTTC--------CHHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHH---HHcCC--------CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 45666655554 44554 467899999999999999987654
No 285
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=40.35 E-value=24 Score=24.12 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~G 152 (209)
.+.|.+||+|+-++|.+..++.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G 30 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYG 30 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHccC
Confidence 34567899999999999999987
No 286
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=40.29 E-value=2.6 Score=32.19 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|++.||++.+|=..|.|+
T Consensus 26 y~~~s~~~IA~~AGvs~gt~Y~yF~sK 52 (206)
T 1vi0_A 26 YHQSQVSKIAKQAGVADGTIYLYFKNK 52 (206)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred cccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 455679999999999999999998875
No 287
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=40.28 E-value=5.1 Score=30.25 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|=.+|.|+.
T Consensus 30 y~~ts~~~IA~~agvs~gtlY~yF~sKe 57 (205)
T 1rkt_A 30 FELTTMKDVVEESGFSRGGVYLYFSSTE 57 (205)
T ss_dssp STTCCHHHHHHHHTSCHHHHHTTCSCHH
T ss_pred cccCCHHHHHHHHCCCcchhhhhCCCHH
Confidence 4567899999999999999999987753
No 288
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=40.26 E-value=8.2 Score=26.49 Aligned_cols=22 Identities=0% Similarity=-0.000 Sum_probs=12.7
Q ss_pred HHHHHHHhCCCCceeeeecccc
Q 048824 163 LNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.++||..+||+...|.-|-.+.
T Consensus 30 q~elA~~~gis~~~is~~E~G~ 51 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRE 51 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 3456666666666666655544
No 289
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=40.15 E-value=73 Score=24.79 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~G 152 (209)
.++|.|..||.|+-+.|.+..++.|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G 50 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLG 50 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 4678899999999999999999987
No 290
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=39.91 E-value=8.1 Score=27.65 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=9.3
Q ss_pred HHHHHHhCCCCceeeeeccc
Q 048824 164 NQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 164 e~fc~eiGv~r~V~KVWfhN 183 (209)
++||..+||++..|.-|..+
T Consensus 45 ~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 45 RELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHCC
Confidence 34444444444444444433
No 291
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=39.77 E-value=38 Score=24.89 Aligned_cols=35 Identities=9% Similarity=0.389 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|.|||++|-+- ..+.|++.+|++...+-|-|....
T Consensus 71 t~eqK~~l~~~--------------l~~~l~~~lg~~~~~v~V~i~e~~ 105 (128)
T 1mww_A 71 MEGTKKRLIKM--------------LFSELEYKLGIRAHDVEITIKEQP 105 (128)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEEEC
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcChhhEEEEEEECC
Confidence 79999988764 556788899999999999887654
No 292
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=39.52 E-value=23 Score=27.55 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHH
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNE 169 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~e 169 (209)
.+++||..||+++...|-..|..-.+....+..+|=..
T Consensus 6 ~~~~~t~~qLqkkfkHa~DFGi~~t~~N~~t~~~feda 43 (107)
T 1v74_A 6 DSGRFSRKQLDKKYKHAGDFGISDTKKNRETLTKFRDA 43 (107)
T ss_dssp CBTTBCHHHHHHHGGGGGGGTCCCCCCSHHHHHHHHHH
T ss_pred cCCcccHHHHHhHhcccccccccccccChhhHHHHHHH
Confidence 46899999999999999998877766666555555443
No 293
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=39.30 E-value=3.6 Score=31.53 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-.+|-|+.
T Consensus 40 ~~~~s~~~IA~~AGVsk~tlY~~F~sKe 67 (207)
T 3bjb_A 40 LARVQMHEVAKRAGVAIGTLYRYFPSKT 67 (207)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4556899999999999999999998754
No 294
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=39.10 E-value=82 Score=22.59 Aligned_cols=58 Identities=10% Similarity=0.206 Sum_probs=35.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHH----HHHHHhCCCC-ceeeeeccccc
Q 048824 128 KSKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALN----QFCNEVGVKR-HVLKVWMHNNK 185 (209)
Q Consensus 128 ~kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve----~fc~eiGv~r-~V~KVWfhNnR 185 (209)
.+||.|+..+.++=+.|..+.+..-.+--..+..+|+ +|+.++|++. .+=.-|+++=+
T Consensus 65 ~~kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~ 127 (131)
T 1hlv_A 65 CRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFR 127 (131)
T ss_dssp TCCCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 4677888888888777778766654332335555554 5666778762 22234666533
No 295
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=38.93 E-value=4.9 Score=29.67 Aligned_cols=27 Identities=11% Similarity=0.423 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+ ..++++|++.||++.+|-..|.|+.
T Consensus 27 ~~-~t~~~IA~~aGvs~~tly~~F~sK~ 53 (190)
T 3jsj_A 27 VG-IGVEALCKAAGVSKRSMYQLFESKD 53 (190)
T ss_dssp TT-CCHHHHHHHHTCCHHHHHHHCSCHH
T ss_pred cc-ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 45 7899999999999999999998754
No 296
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=38.61 E-value=8.3 Score=29.25 Aligned_cols=28 Identities=7% Similarity=0.252 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=..|.|+.
T Consensus 29 y~~ts~~~IA~~aGvsk~tlY~~F~sKe 56 (202)
T 2i10_A 29 YEGTSITDLTKALGINPPSLYAAFGSKR 56 (202)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred cccCCHHHHHHHhCCChHHHHHHhCCHH
Confidence 4566799999999999999988887753
No 297
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=38.57 E-value=8.8 Score=26.97 Aligned_cols=17 Identities=6% Similarity=-0.115 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048824 158 QDDVALNQFCNEVGVKR 174 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r 174 (209)
++...+..||..+||+.
T Consensus 58 ~~~~~l~~l~~~l~v~~ 74 (104)
T 3cec_A 58 ITVDIAIRLGKALGNGP 74 (104)
T ss_dssp CCHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHCcCH
Confidence 44444455555555443
No 298
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=38.33 E-value=47 Score=20.58 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.|.|||++|.+- .-+.+++.+|+++..+-|-|+..
T Consensus 14 ~s~e~k~~l~~~--------------l~~~l~~~lg~p~~~v~v~i~e~ 48 (63)
T 2x4k_A 14 RSDEQLKNLVSE--------------VTDAVEKTTGANRQAIHVVIEEM 48 (63)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGCEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEEc
Confidence 378999887764 45667888999999888866643
No 299
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=38.29 E-value=8.6 Score=26.80 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHhCCCCc
Q 048824 157 RQDDVALNQFCNEVGVKRH 175 (209)
Q Consensus 157 kpd~~~ve~fc~eiGv~r~ 175 (209)
.|+...+..||+-+||+..
T Consensus 44 ~p~~~~l~~la~~l~v~~~ 62 (98)
T 3lfp_A 44 APDFEMANRLAKVLKIPVS 62 (98)
T ss_dssp CCCHHHHHHHHHHHTSCGG
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3677777777777777765
No 300
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=38.29 E-value=28 Score=26.41 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC
Q 048824 127 GKSKRQRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 127 ~~kKR~RTkFT~EQkekM~~faEk~G 152 (209)
..++|.|..||.|+-+.|.+..++.|
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G 32 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLG 32 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 35688999999999999999999987
No 301
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=38.21 E-value=4.7 Score=27.09 Aligned_cols=24 Identities=13% Similarity=0.524 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCCceeeeeccccc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..++||..+||+...|.-|..+++
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 457899999999999999998765
No 302
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=38.18 E-value=4.9 Score=30.35 Aligned_cols=28 Identities=7% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|=..|.|+.
T Consensus 28 ~~~~s~~~Ia~~Agvskgt~Y~yF~sKe 55 (197)
T 2f07_A 28 LDKASISDIVKKAGTAQGTFYLYFSSKN 55 (197)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHCSSST
T ss_pred cccCCHHHHHHHhCCCchHHHHhCCCHH
Confidence 4566899999999999999999998854
No 303
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=37.67 E-value=3.6 Score=29.99 Aligned_cols=28 Identities=4% Similarity=0.238 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 28 ~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 55 (191)
T 3on4_A 28 YNAFSFKDIATAINIKTASIHYHFPSKE 55 (191)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCcchhhhcCCCHH
Confidence 4566799999999999999999998753
No 304
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=37.61 E-value=58 Score=26.79 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHH-HHHHhCcccCCCC-HHHHHHHHHHhCCCCce
Q 048824 135 KFTQEQKDKMLE-FAERIGWRMQRQD-DVALNQFCNEVGVKRHV 176 (209)
Q Consensus 135 kFT~EQkekM~~-faEk~GW~iqkpd-~~~ve~fc~eiGv~r~V 176 (209)
.||.++..+|+. ..+.++|++..+. ..-+..|+..++++..+
T Consensus 125 ~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 168 (257)
T 1g3n_C 125 SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQH 168 (257)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTT
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhH
Confidence 589999999998 8899999999877 67889999999987653
No 305
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=37.59 E-value=3.7 Score=30.99 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 21 ~~~~s~~~IA~~Agvs~~t~Y~~F~sK~ 48 (212)
T 3rh2_A 21 ERTITTNHIAAHLDISPGNLYYHFRNKE 48 (212)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4556799999999999999999988754
No 306
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.48 E-value=7.7 Score=25.82 Aligned_cols=18 Identities=39% Similarity=0.994 Sum_probs=15.8
Q ss_pred ccc--cccCCCCcccccccc
Q 048824 43 CCE--FMPRADDSLTCAACG 60 (209)
Q Consensus 43 C~E--fm~~~~~~l~CaaCg 60 (209)
||. ||....+.+.|..||
T Consensus 25 CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 25 CGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SCSSCEEEECSSEEECSSSC
T ss_pred CCCceEEecCCCeEECCCCC
Confidence 777 999888899999987
No 307
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=37.39 E-value=6.8 Score=24.45 Aligned_cols=12 Identities=50% Similarity=0.982 Sum_probs=10.1
Q ss_pred cccccccccccc
Q 048824 53 SLTCAACGCHRN 64 (209)
Q Consensus 53 ~l~CaaCgCHRn 64 (209)
.|+|.|||-++.
T Consensus 21 ~l~C~aCG~~~~ 32 (36)
T 1k81_A 21 LLKCMACGAIRP 32 (36)
T ss_dssp EEEEETTTEEEE
T ss_pred EEEhhcCCCccc
Confidence 689999998764
No 308
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=37.36 E-value=3.5 Score=33.42 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+...+.++|.++||++.+|-..|-|+-
T Consensus 47 ~~~~s~~~IA~~aGvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 47 AETFSVRKLAASLGTDSSSLYRHFRNKT 74 (241)
T ss_dssp CCCCCHHHHHHHTTSCHHHHHHHTSSHH
T ss_pred cccCCHHHHHHHhCcCHHHHHHHcCCHH
Confidence 5567899999999999999999988853
No 309
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=37.16 E-value=26 Score=23.74 Aligned_cols=28 Identities=7% Similarity=0.319 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCceeeeeccccccc
Q 048824 160 DVALNQFCNEVGVKRHVLKVWMHNNKNA 187 (209)
Q Consensus 160 ~~~ve~fc~eiGv~r~V~KVWfhNnR~k 187 (209)
....+.||++.|++...++.+|...|-.
T Consensus 25 ~kl~~~y~~~~gi~~~~~rf~fdG~~l~ 52 (72)
T 1wm3_A 25 SKLMKAYCERQGLSMRQIRFRFDGQPIN 52 (72)
T ss_dssp HHHHHHHHHHHTCCTTTCEEEETTEECC
T ss_pred HHHHHHHHHHhCCCcceEEEEECCEEcC
Confidence 5577788888999999999999888754
No 310
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=37.13 E-value=4.8 Score=30.37 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=..|.|+-
T Consensus 25 ~~~ts~~~IA~~aGvs~gtlY~~F~sKe 52 (197)
T 2gen_A 25 VDATTIEMIRDRSGASIGSLYHHFGNKE 52 (197)
T ss_dssp TTTCCHHHHHHHHCCCHHHHHHHTCSHH
T ss_pred cccCCHHHHHHHHCCChHHHHHHCCCHH
Confidence 4567899999999999999988887753
No 311
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=37.07 E-value=6.7 Score=28.70 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 141 KDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 141 kekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
++...+.+.+.| -+...++++|++.||++.+|-..|.|+
T Consensus 8 l~aa~~l~~~~G-----~~~~ti~~Ia~~agvs~~t~Y~~F~sK 46 (194)
T 3bqz_B 8 LGVAKELFIKNG-----YNATTTGEIVKLSESSKGNLYYHFKTK 46 (194)
T ss_dssp HHHHHHHHHHHT-----TTTCCHHHHHHHTTCCHHHHHHHTSSH
T ss_pred HHHHHHHHHHcC-----CccCCHHHHHHHhCCCchhHHHhCCCH
Confidence 444445444445 455679999999999999998888775
No 312
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=36.65 E-value=52 Score=25.74 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=20.6
Q ss_pred CHHHHHHHHH----HHHHhCcccCCCCHHHHHHHHHH
Q 048824 137 TQEQKDKMLE----FAERIGWRMQRQDDVALNQFCNE 169 (209)
Q Consensus 137 T~EQkekM~~----faEk~GW~iqkpd~~~ve~fc~e 169 (209)
+++.+++|.. +|++.||..+ ||.+.+..+-.-
T Consensus 7 ~~~~~e~~~~f~ek~ae~~G~~~N-pD~evt~~vi~G 42 (117)
T 1dj7_A 7 NNKTLAAMKNFAEQYAKRTDTYFC-SDLSVTAVVIEG 42 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBCB-SSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCEEC-CCHHHHHHHHHH
Confidence 3566777666 5889999775 566555544433
No 313
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=36.61 E-value=4.3 Score=30.86 Aligned_cols=28 Identities=7% Similarity=0.254 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-.+|-|+-
T Consensus 26 ~~~~s~~~IA~~aGvs~~tiY~~F~sKe 53 (202)
T 2d6y_A 26 IAGARIDRIAAEARANKQLIYAYYGNKG 53 (202)
T ss_dssp TTSCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4556799999999999999999887753
No 314
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=36.39 E-value=5.7 Score=30.15 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
.+|..+.+.|.-+++. . ..+++|.++|++.++|++...|=+.|+.-
T Consensus 142 ~Lt~rE~~vl~~l~~g-------~---s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~ 187 (208)
T 1yio_A 142 SLTGREQQVLQLTIRG-------L---MNKQIAGELGIAEVTVKVHRHNIMQKLNV 187 (208)
T ss_dssp TSCHHHHHHHHHHTTT-------C---CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHcC-------C---cHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 4777777777665432 1 34678999999999999999998888764
No 315
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=36.36 E-value=3.7 Score=31.06 Aligned_cols=25 Identities=4% Similarity=0.147 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCCceeeeeccccc
Q 048824 161 VALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 161 ~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..++++|.+.||++.+|-.+|-|+.
T Consensus 32 ~s~~~IA~~agvs~~tiY~~F~sK~ 56 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITYYFGSKE 56 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred ccHHHHHHHhCCCHHHHHHhcCCHH
Confidence 6899999999999999999998753
No 316
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=36.36 E-value=9.8 Score=26.39 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCCceeeeecc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfh 182 (209)
..++||..+||++.+|.-|..
T Consensus 24 T~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 24 SLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp CHHHHHHHHSSCHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 456678888888877777755
No 317
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=36.05 E-value=40 Score=24.20 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|.|||++|-+- .-+.|.+.+|++...+-|-|+...
T Consensus 69 ~~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (112)
T 3b64_A 69 GPSEPEKVTSI--------------VTAAITKECGIVADRIFVLYFSPL 103 (112)
T ss_dssp CTTHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEECCS
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcCcceEEEEEEEhh
Confidence 57999887764 445688999999999999998776
No 318
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=35.98 E-value=26 Score=26.94 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCC
Q 048824 139 EQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVK 173 (209)
Q Consensus 139 EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~ 173 (209)
+-.++|.+|.++..-.+..+++++|.++-++|||+
T Consensus 3 ~~ie~L~~~~~~~~~~~~~~t~e~I~~~E~~Lgi~ 37 (135)
T 2pag_A 3 EVIEQLREANEPVPVPLELPDEDQLVEIEEQLFIN 37 (135)
T ss_dssp HHHHHHHHHCCCCSSCCCCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHCCC
Confidence 45667777777777666778888888888888876
No 319
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=35.97 E-value=20 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~G 152 (209)
.++....||.|+++.|++.|+..|
T Consensus 15 ~~~i~vRlt~eE~~~l~~~A~~~g 38 (51)
T 2ba3_A 15 TVVRTLRFSPVEDETIRKKAEDSG 38 (51)
T ss_dssp SEEEEEEECHHHHHHHHHHHHHHT
T ss_pred ceeEEEEECHHHHHHHHHHHHHhC
Confidence 344556799999999999999988
No 320
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=35.38 E-value=53 Score=24.25 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.|.|||++|-+- .-+.|+..+|++...+-|-|....
T Consensus 76 rt~eqK~~l~~~--------------l~~~l~~~lg~~~~~v~I~i~e~~ 111 (131)
T 2aal_A 76 RSEEQKVCFYKL--------------LTGALERDCGISPDDVIVALVENS 111 (131)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEECC
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEEcC
Confidence 489999888764 556788999999999999887654
No 321
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=35.35 E-value=6.1 Score=29.92 Aligned_cols=27 Identities=7% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|++.||++.+|-..|-|+
T Consensus 30 ~~~ts~~~IA~~aGvsk~tlY~~F~sK 56 (211)
T 3bhq_A 30 YDGTSMEEIATKAGASKQTVYKHFTDK 56 (211)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 566789999999999999998888775
No 322
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=35.19 E-value=54 Score=27.22 Aligned_cols=42 Identities=10% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHH-HHHHhCcccCCCC-HHHHHHHHHHhCCCCce
Q 048824 135 KFTQEQKDKMLE-FAERIGWRMQRQD-DVALNQFCNEVGVKRHV 176 (209)
Q Consensus 135 kFT~EQkekM~~-faEk~GW~iqkpd-~~~ve~fc~eiGv~r~V 176 (209)
.||.+++.+|+. ..+.++|++..+. ..-+..|+..++++..+
T Consensus 131 ~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~ 174 (271)
T 2w96_A 131 SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEEN 174 (271)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchH
Confidence 689999999998 8899999999877 57888999999887543
No 323
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=34.88 E-value=37 Score=26.64 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
..||.|||+.|-+- .-+.+++-+|+++.-|.|.|+--
T Consensus 10 ~~~t~eqK~aLa~~--------------It~a~~e~~~vP~~~v~Vif~e~ 46 (149)
T 3mf7_A 10 DRLTPSAKHAVAKA--------------ITDAHRGLTGTQHFLAQVNFQEQ 46 (149)
T ss_dssp TTSCHHHHHHHHHH--------------HHHHHHHTCCTTCCCCEEEEEEE
T ss_pred CCCCHHHHHHHHHH--------------HHHHHHHHHCcChHHEEEEEEEc
Confidence 46899999887754 44567778899999999998753
No 324
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=34.85 E-value=11 Score=29.19 Aligned_cols=20 Identities=5% Similarity=-0.032 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHhCCCCce
Q 048824 157 RQDDVALNQFCNEVGVKRHV 176 (209)
Q Consensus 157 kpd~~~ve~fc~eiGv~r~V 176 (209)
.++...+..||+.+||+..-
T Consensus 50 ~p~~~~l~~ia~~l~v~~~~ 69 (192)
T 1y9q_A 50 SPTIATLWKIASGLEASFSA 69 (192)
T ss_dssp CCCHHHHHHHHHHHTCCSGG
T ss_pred CCCHHHHHHHHHHHCcCHHH
Confidence 46777888888888887643
No 325
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=34.76 E-value=3.2 Score=30.58 Aligned_cols=28 Identities=7% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+.
T Consensus 25 ~~~~t~~~IA~~agvs~~tlY~~F~sK~ 52 (186)
T 2jj7_A 25 YEGTSIQEIAKEAKVNVAMASYYFNGKE 52 (186)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred CccCCHHHHHHHhCCChhhhhhhcCCHH
Confidence 4456899999999999999999998754
No 326
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1; alpha-beta motif, substrate-binding cleft; HET: A3P CIT; 1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Probab=34.69 E-value=68 Score=25.77 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCC
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKR 174 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r 174 (209)
.|.|..++.|++++|.+|+.. .+++|.+.||.+-
T Consensus 234 ~~~~~~l~~e~~~~L~~~~~~-----------~~~~L~~l~g~~~ 267 (271)
T 1t8t_A 234 GRTHPEIDREVVRRLREFYRP-----------FNLKFYQMTGHDF 267 (271)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCcCC
Confidence 456789999999999998666 6788888888763
No 327
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=34.37 E-value=5.6 Score=30.56 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhC---CCCceeeeecccccccCCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVG---VKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiG---v~r~V~KVWfhNnR~k~kk~ 191 (209)
..+|.-+.+.|.-+++..| ..-..+++|++++ ++.++|++...|=|.|+.-.
T Consensus 144 ~~Lt~rE~~vl~~l~~~~~------~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~~ 198 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAENAG------KVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDD 198 (220)
T ss_dssp CCCCHHHHHHHHHHHHTTT------SCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSS
T ss_pred EecCHHHHHHHHHHHHCCC------ceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcc
Confidence 4599999999998887743 2236788999999 99999999999999988643
No 328
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=34.37 E-value=28 Score=25.76 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|.|||++|-+- .-+.|.+.+|++...+-|-|....
T Consensus 69 t~eqk~~l~~~--------------i~~~l~~~lgi~~~~v~I~~~e~~ 103 (125)
T 2wkb_A 69 NRSNNSLLADK--------------ITKILSNHLSVKPRRVYIEFRDCS 103 (125)
T ss_dssp --CTHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEC--
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhCcCcceEEEEEEECC
Confidence 57999887763 445688899999999999888765
No 329
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=34.07 E-value=33 Score=23.80 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCceeeeeccccccc
Q 048824 161 VALNQFCNEVGVKRHVLKVWMHNNKNA 187 (209)
Q Consensus 161 ~~ve~fc~eiGv~r~V~KVWfhNnR~k 187 (209)
...+.+|++.||+...++.+|...|-.
T Consensus 33 kl~~~y~~~~gi~~~~~rf~fdG~~l~ 59 (79)
T 3a4r_A 33 VLMSHYEEAMGLSGHKLSFFFDGTKLS 59 (79)
T ss_dssp HHHHHHHHHHTCTTCCCEEEETTEECC
T ss_pred HHHHHHHHHhCCCcccEEEEECCEEcC
Confidence 355667778889999999999887643
No 330
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=34.06 E-value=16 Score=23.26 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=19.1
Q ss_pred ccccccccccCCCCcccccccc--cccccccc
Q 048824 39 ANDGCCEFMPRADDSLTCAACG--CHRNFHRR 68 (209)
Q Consensus 39 ~~DGC~Efm~~~~~~l~CaaCg--CHRnFHr~ 68 (209)
.=|=|++||- .+|+|..|+ ||+.-+.+
T Consensus 16 ~C~~C~~~l~---qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 16 FCDICQKFLL---NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp ECTTSSSEEC---SEEECTTTTCCBCSTTSSS
T ss_pred CCCCcccccc---cCCEeCCCCCeEChhHHhh
Confidence 3467999986 689999985 55554433
No 331
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=33.92 E-value=11 Score=30.12 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=11.0
Q ss_pred ccccccccccccc
Q 048824 53 SLTCAACGCHRNF 65 (209)
Q Consensus 53 ~l~CaaCgCHRnF 65 (209)
.|+|.|||.+|..
T Consensus 123 ~l~C~ACGa~~~V 135 (138)
T 1nee_A 123 LLKCEACGAKAPL 135 (138)
T ss_dssp EEECSTTSCCCCS
T ss_pred EEEccCCCCCccc
Confidence 6899999998754
No 332
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=33.83 E-value=7.4 Score=29.45 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|-|+-
T Consensus 32 ~~~~s~~~IA~~agvsk~tlY~yF~sKe 59 (199)
T 3crj_A 32 YADLTIQRIADEYGKSTAAVHYYYDTKD 59 (199)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred cccCCHHHHHHHhCCChhHHhhhcCCHH
Confidence 4566899999999999999999998753
No 333
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=33.79 E-value=3.4 Score=31.68 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|-..|.|+-
T Consensus 23 ~~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 50 (228)
T 3nnr_A 23 ERNITTNHIAAHLAISPGNLYYHFRNKS 50 (228)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhhcCHHHHHHHhCCCCccchhcCCCHH
Confidence 4556799999999999999998888753
No 334
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=33.59 E-value=5.9 Score=30.50 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|.+.||++.+|=..|.|+-
T Consensus 27 y~~ts~~~IA~~AGvskgtlY~~F~sKe 54 (215)
T 1ui5_A 27 YESTTLSEIVAHAGVTKGALYFHFAAKE 54 (215)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCchhhHhhCCCHH
Confidence 4566799999999999999988887753
No 335
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=33.52 E-value=7.1 Score=29.32 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|-..|.|+.
T Consensus 28 ~~~~s~~~IA~~aGvs~gtlY~yF~sKe 55 (194)
T 2nx4_A 28 IEAANMRDIATEAGYTNGALSHYFAGKD 55 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHhCCCcchHHHhCcCHH
Confidence 4566799999999999999998888753
No 336
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=33.42 E-value=0.35 Score=36.79 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=32.4
Q ss_pred CCHHHHHHHHH-HHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCC
Q 048824 136 FTQEQKDKMLE-FAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 136 FT~EQkekM~~-faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk 190 (209)
++..|++.+.- |.+. + ..+++|..+||+..+|+.+++.-|.++++
T Consensus 136 L~~~~r~vl~l~~~~g--~--------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGD--L--------THRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSC--C--------SSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 55666666654 3222 1 34578999999999999999988887764
No 337
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=33.20 E-value=6.1 Score=29.98 Aligned_cols=27 Identities=0% Similarity=0.046 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.+...++++|++.||++.+|=..|.|+
T Consensus 30 ~~~~s~~~IA~~agvs~~t~Y~hF~~K 56 (198)
T 3cjd_A 30 LASLRARELARQADCAVGAIYTHFQDL 56 (198)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred hhhcCHHHHHHHhCCCccHHHHHhCCH
Confidence 556689999999999999998888775
No 338
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=33.19 E-value=9.6 Score=29.85 Aligned_cols=52 Identities=10% Similarity=0.159 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHh-----CCCCceeeeecccccccCCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEV-----GVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~ei-----Gv~r~V~KVWfhNnR~k~kk~ 191 (209)
..+|.-+.+.|.-+++..| ..-..+++++++ +++.++|++...|=|.|+.-+
T Consensus 152 ~~LT~rE~~vL~~l~~~~~------~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPR------QVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTT------CCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred cccCHHHHHHHHHHHHCCC------ceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 4699999999999888743 123567888888 899999999888888887643
No 339
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=33.12 E-value=4.5 Score=29.91 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccccccCCCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNASHRR 191 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k~kk~ 191 (209)
.++..|++.+.-.+-- .....-..+++|..+||++.+|+...+.-..++++.
T Consensus 19 ~Lp~reR~Vi~Lry~l-----~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFGI-----DMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4667777777653210 001234789999999999999999988877777653
No 340
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=32.96 E-value=6.3 Score=27.82 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCceeeeeccc
Q 048824 163 LNQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfhN 183 (209)
.+++|+.+||++..|--|+.+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 889999999999999999975
No 341
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=32.59 E-value=7.5 Score=28.61 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
.+...++++|.+.||++.+|-..|.|+.
T Consensus 26 ~~~~t~~~IA~~Agvs~~tly~~F~sK~ 53 (194)
T 3dpj_A 26 FAQTSFVDISAAVGISRGNFYYHFKTKD 53 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccCCHHHHHHHHCCChHHHHHHcCCHH
Confidence 5667899999999999999999998754
No 342
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=32.49 E-value=8.9 Score=28.37 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 141 KDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 141 kekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
++.-.+.+.+.| -+...++++|++.||++.+|-.+|.|+.
T Consensus 13 l~aA~~lf~~~G-----~~~~t~~~IA~~agvs~~tlY~~F~sK~ 52 (192)
T 2zcm_A 13 IDNAITLFSEKG-----YDGTTLDDISKSVNIKKASLYYHYDNKE 52 (192)
T ss_dssp HHHHHHHHHHHC-----TTTCCHHHHHHHTTCCHHHHHHHTCCHH
T ss_pred HHHHHHHHHHcC-----cccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 444444444445 4556799999999999999999998753
No 343
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.93 E-value=38 Score=25.79 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCCCC
Q 048824 133 RTKFTQEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGVKR 174 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv~r 174 (209)
++.||+||++.|++.|...--. --+-+..++..+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 5778899988888866653110 01245677777777777653
No 344
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=31.90 E-value=31 Score=25.65 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCCceeeeecccccc
Q 048824 163 LNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
.+.+|++.||+...|+-+|-..|-
T Consensus 53 m~aY~~~~g~~~~~vrF~FDG~rI 76 (97)
T 2jxx_A 53 MSHYEEAMGLSGRKLSFFFDGTKL 76 (97)
T ss_dssp HHHHHHHTTCSSSCCEEEETTEEC
T ss_pred HHHHHHHHCCCcccEEEEECCEEc
Confidence 344566677888999999988765
No 345
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=31.64 E-value=17 Score=22.12 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=14.4
Q ss_pred ccccccccccccccccccc
Q 048824 53 SLTCAACGCHRNFHRREVR 71 (209)
Q Consensus 53 ~l~CaaCgCHRnFHr~e~~ 71 (209)
.-+|..|+-| ||.+|..-
T Consensus 6 DW~C~~C~~~-Nfa~R~~C 23 (33)
T 2k1p_A 6 DWQCKTCSNV-NWARRSEC 23 (33)
T ss_dssp SCBCSSSCCB-CCTTCSBC
T ss_pred CcccCCCCCc-cccccccc
Confidence 4579999988 99998753
No 346
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=30.78 E-value=11 Score=29.98 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=5.5
Q ss_pred ccccccccccccc
Q 048824 53 SLTCAACGCHRNF 65 (209)
Q Consensus 53 ~l~CaaCgCHRnF 65 (209)
.|+|.|||.+|.-
T Consensus 124 ~l~C~ACGa~~~V 136 (139)
T 3cw2_K 124 YIVCLACGAQTPV 136 (139)
T ss_dssp TSSCCC-------
T ss_pred EEEecCCCCCCcc
Confidence 6899999998753
No 347
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=30.66 E-value=13 Score=30.10 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCCCCHHHH-HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 133 RTKFTQEQK-DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 133 RTkFT~EQk-ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
|..+|.+++ +.-.+.+.+.| -+...+.++|+++||++.+|-..|.|+.
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G-----~~~~S~r~IA~~aGvs~~tlY~hF~~K~ 51 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEG-----LDALSMRRLAQELKTGHASLYAHVGNRD 51 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHC-----GGGCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred CCcCCHHHHHHHHHHHHHhCC-----ccccCHHHHHHHHCCChhHHHHHcCCHH
Confidence 344555543 44445555555 4556789999999999999988888754
No 348
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=30.60 E-value=36 Score=25.24 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=18.3
Q ss_pred CC-CCCHHHHHHHHHHHHHhCccc
Q 048824 133 RT-KFTQEQKDKMLEFAERIGWRM 155 (209)
Q Consensus 133 RT-kFT~EQkekM~~faEk~GW~i 155 (209)
|| ..++|.+++++++++.+|+..
T Consensus 120 R~~~~~~e~~~~f~~~~~~~G~~~ 143 (157)
T 1dzk_A 120 KGTDIEDQDLEKFKEVTRENGIPE 143 (157)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCG
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCH
Confidence 44 589999999999988887543
No 349
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=30.58 E-value=46 Score=28.54 Aligned_cols=33 Identities=18% Similarity=0.515 Sum_probs=23.2
Q ss_pred HHHHHHHHhCcccCCCCH--HHHHHHHHHhCCCCc
Q 048824 143 KMLEFAERIGWRMQRQDD--VALNQFCNEVGVKRH 175 (209)
Q Consensus 143 kM~~faEk~GW~iqkpd~--~~ve~fc~eiGv~r~ 175 (209)
.|++||.+..=.|.+... ..-++.|..|||++=
T Consensus 42 ~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDPL 76 (233)
T 1u5t_A 42 RLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPL 76 (233)
T ss_dssp HHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCCC
Confidence 466799997555554322 477889999999943
No 350
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=30.50 E-value=23 Score=31.75 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCCceeeeecc
Q 048824 160 DVALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 160 ~~~ve~fc~eiGv~r~V~KVWfh 182 (209)
...++++|.++||++++|+-|+.
T Consensus 52 ~~a~~~~a~~~gvS~~Tl~rW~~ 74 (529)
T 4fcy_A 52 KTAFATVAGHYQVSASTLRDKYY 74 (529)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 56799999999999999999974
No 351
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=30.44 E-value=12 Score=27.25 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=28.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHH--hCccc--CCCCHHHHHHHHHHhCCCCcee
Q 048824 130 KRQRTKFTQEQKDKMLEFAER--IGWRM--QRQDDVALNQFCNEVGVKRHVL 177 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk--~GW~i--qkpd~~~ve~fc~eiGv~r~V~ 177 (209)
-|.+..+|++++.+....... ..|.. ..++...+..||..+||+..-|
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l 82 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDI 82 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGE
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 445556777777665421000 01222 2478888999999999887644
No 352
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=30.44 E-value=44 Score=30.56 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHhCcccCC--CCHHHHHHHHHHh
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQR--QDDVALNQFCNEV 170 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqk--pd~~~ve~fc~ei 170 (209)
.++.||.+.|+.++|+-||-+-+ =+.++|++|=.++
T Consensus 24 ~l~~~qve~~~~~fE~eGYLvlk~vFs~eEv~~l~~el 61 (344)
T 3nnf_A 24 AMNREQVEQLKQEYEEKGYCQIKKIFDFSAIKTIQKTL 61 (344)
T ss_dssp -CCSHHHHHHHHHHHHHSEEEETTCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhhccCceEEEcCCCCHHHHHHHHHHH
Confidence 35689999999999999998866 5677777776654
No 353
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=30.25 E-value=36 Score=24.42 Aligned_cols=26 Identities=8% Similarity=0.359 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCCceeeeeccccccc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHNNKNA 187 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhNnR~k 187 (209)
..+.||+..||+...++.+|...|-.
T Consensus 43 l~~~y~~~~gi~~~~~rf~fdG~~l~ 68 (93)
T 2d07_B 43 LMKAYCERQGLSMRQIRFRFDGQPIN 68 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred HHHHHHHHhCCCccceEEEECCEEcC
Confidence 45566777889999999999988754
No 354
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=30.17 E-value=35 Score=25.60 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCceeeeeccccccc
Q 048824 160 DVALNQFCNEVGVKRHVLKVWMHNNKNA 187 (209)
Q Consensus 160 ~~~ve~fc~eiGv~r~V~KVWfhNnR~k 187 (209)
....+.||++.||+...++.+|-.+|-.
T Consensus 54 ~kL~~ay~ek~gi~~~~~rF~FdG~rl~ 81 (106)
T 2eke_C 54 RRLMEAFAKRQGKEMDSLRFLYDGIRIQ 81 (106)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred HHHHHHHHHHhCCCcccEEEEECCeEcC
Confidence 3455667888899999999999887654
No 355
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=29.88 E-value=21 Score=23.63 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCceeeeecc
Q 048824 163 LNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfh 182 (209)
+.+.|..+||++.+|.-|+.
T Consensus 35 ~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 66889999999999988875
No 356
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=29.76 E-value=17 Score=26.22 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=12.3
Q ss_pred HHHHHHHhCCCCceeeeecccc
Q 048824 163 LNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 163 ve~fc~eiGv~r~V~KVWfhNn 184 (209)
.++||..+||++.+|.-|..+.
T Consensus 52 q~elA~~~gis~~~is~~E~G~ 73 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGT 73 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3455566666666555555543
No 357
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.68 E-value=12 Score=26.25 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCcccCCCC-HHHHHHHHHHhCCCCceeeeeccc
Q 048824 141 KDKMLEFAERIGWRMQRQD-DVALNQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 141 kekM~~faEk~GW~iqkpd-~~~ve~fc~eiGv~r~V~KVWfhN 183 (209)
.+++.++-+.. ..+ .-.++++|+.+||+++.|.-.|..
T Consensus 4 ~~~i~~~i~~~-----~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 4 KELIQNIIEES-----YTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHHH-----TTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----ccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45566655553 233 457889999999999988777653
No 358
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.48 E-value=65 Score=26.33 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC--------------------cccCCCCHHHHHHHHHHhC
Q 048824 133 RTKFTQEQKDKMLEFAERIG--------------------WRMQRQDDVALNQFCNEVG 171 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~G--------------------W~iqkpd~~~ve~fc~eiG 171 (209)
.--+|.||+++|.+..++.- +.-.++|++.|++++++|.
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~ 123 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEME 123 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 34689999999877544310 1224578888888887775
No 359
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=29.43 E-value=28 Score=23.31 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=22.8
Q ss_pred cccccccccccC-CCCccccccc--cccccccccc
Q 048824 38 HANDGCCEFMPR-ADDSLTCAAC--GCHRNFHRRE 69 (209)
Q Consensus 38 ~~~DGC~Efm~~-~~~~l~CaaC--gCHRnFHr~e 69 (209)
..=|=|++||-. ...+++|..| .||+.-+.+.
T Consensus 24 t~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v 58 (65)
T 2enz_A 24 TFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKV 58 (65)
T ss_dssp CBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTTS
T ss_pred cCchhcChhheecCCcccccCCCCCccCHhHHhhC
Confidence 445789999964 3469999998 4776665543
No 360
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=29.27 E-value=16 Score=24.56 Aligned_cols=30 Identities=23% Similarity=0.593 Sum_probs=20.8
Q ss_pred ccccccccccC-CCCcccccccc--cccccccc
Q 048824 39 ANDGCCEFMPR-ADDSLTCAACG--CHRNFHRR 68 (209)
Q Consensus 39 ~~DGC~Efm~~-~~~~l~CaaCg--CHRnFHr~ 68 (209)
.=|=|++||-. +...++|..|+ ||+.-+.+
T Consensus 22 ~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 22 FCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp BCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred cccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 44779999964 34699999886 55554443
No 361
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=29.01 E-value=16 Score=26.38 Aligned_cols=37 Identities=8% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecc
Q 048824 138 QEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfh 182 (209)
.-+++.+++..++.+|. +.+.|..+||++.+|..|+.
T Consensus 40 ~~Er~~I~~aL~~~~GN--------~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRN--------VSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHHHHTTSC--------HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--------HHHHHHHhCCCHHHHHHHHH
Confidence 34455566666666552 56889999999999977764
No 362
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=28.83 E-value=20 Score=24.42 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=24.1
Q ss_pred CcccccccccccCCCCcccccccc--ccccccccc
Q 048824 37 GHANDGCCEFMPRADDSLTCAACG--CHRNFHRRE 69 (209)
Q Consensus 37 g~~~DGC~Efm~~~~~~l~CaaCg--CHRnFHr~e 69 (209)
.--=|=|++.|--|..+++|..|+ ||..=|.+.
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~~ 53 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRC 53 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGGGS
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhhcC
Confidence 344467888886556799999999 887666543
No 363
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=28.75 E-value=1.1e+02 Score=25.75 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHH-HHHHhCcccCCCC-HHHHHHHHHHhCCCCc
Q 048824 135 KFTQEQKDKMLE-FAERIGWRMQRQD-DVALNQFCNEVGVKRH 175 (209)
Q Consensus 135 kFT~EQkekM~~-faEk~GW~iqkpd-~~~ve~fc~eiGv~r~ 175 (209)
.||.+++.+|+. ....++|++..+. ..-+..|+..++++..
T Consensus 125 ~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~ 167 (283)
T 1w98_B 125 ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDL 167 (283)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSS
T ss_pred CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCch
Confidence 589999999998 8999999999877 5788999999998754
No 364
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=28.59 E-value=6.9 Score=27.10 Aligned_cols=21 Identities=14% Similarity=0.539 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCCceeeeecc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfh 182 (209)
.+.++|..+||+.++|+.|-.
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 477899999999999999965
No 365
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.45 E-value=4.9 Score=30.81 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=..|.|+-
T Consensus 21 ~~~~s~~~IA~~AGvskgtlY~hF~sKe 48 (208)
T 2g3b_A 21 IRGLRVNDVAEVAGVSPGLLYYHFKDRI 48 (208)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHHCSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 3456799999999999999998887753
No 366
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=28.34 E-value=16 Score=28.16 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHH----HHHHhCcc--cC-CCCHHHHHHHHHHhCCCCcee
Q 048824 131 RQRTKFTQEQKDKMLE----FAERIGWR--MQ-RQDDVALNQFCNEVGVKRHVL 177 (209)
Q Consensus 131 R~RTkFT~EQkekM~~----faEk~GW~--iq-kpd~~~ve~fc~eiGv~r~V~ 177 (209)
|..-.+|++|+.+... +.-+ |. .. .++...+..||+.+||+..-|
T Consensus 19 r~~~g~s~~~la~~~gis~~~ls~--~e~g~~~~p~~~~l~~ia~~l~~~~~~l 70 (198)
T 2bnm_A 19 REQVKMDHAALASLLGETPETVAA--WENGEGGELTLTQLGRIAHVLGTSIGAL 70 (198)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHH--HHTTTCTTCBHHHHHHHHHHTTSCTGGG
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHH--HHcCCCCCCCHHHHHHHHHHhCCCHHHE
Confidence 3344567766665442 1111 11 12 477888999999999886543
No 367
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=28.08 E-value=16 Score=29.44 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=11.6
Q ss_pred cccccccccccccc
Q 048824 53 SLTCAACGCHRNFH 66 (209)
Q Consensus 53 ~l~CaaCgCHRnFH 66 (209)
.|+|.|||..|.-.
T Consensus 125 ~l~C~ACGa~~~V~ 138 (148)
T 2d74_B 125 FLKCEACGAETPIQ 138 (148)
T ss_dssp CCCCSSSCCCCCCC
T ss_pred EEEecCCCCCcccc
Confidence 78999999987643
No 368
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=27.86 E-value=10 Score=29.59 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|++.||++.+|-..|-|+
T Consensus 25 ~~~ts~~~IA~~AGvs~~tlY~hF~sK 51 (235)
T 2fbq_A 25 FAETSLRLITSKAGVNLAAVNYHFGSK 51 (235)
T ss_dssp STTCCHHHHHHHHTSCHHHHHHHTCSH
T ss_pred ccccCHHHHHHHhCCCHHHHHHHcCCH
Confidence 456689999999999999998888765
No 369
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=27.77 E-value=76 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=19.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~G 152 (209)
...|..||.|+-++|.++.++.|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Confidence 34677999999999999999877
No 370
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=27.65 E-value=5.1 Score=30.27 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
-+...++++|++.||++.+|=..|.|+.
T Consensus 23 y~~~s~~~IA~~AgvskgtlY~yF~sKe 50 (202)
T 2id6_A 23 YDRATTDEIAEKAGVAKGLIFHYFKNKE 50 (202)
T ss_dssp HHHCCHHHHHHHHTCCTHHHHHHHSSHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3456799999999999999999888753
No 371
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate biosynthesis, substrate specificity, glycoprotein, golgi apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Probab=27.06 E-value=92 Score=25.47 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKR 174 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r 174 (209)
+.|.+..++.|++++|.+|++. .+++|.+.||.+-
T Consensus 243 k~~~~~~l~~~~~~~L~~~f~p-----------~~~~L~~llg~~~ 277 (280)
T 3bd9_A 243 KGRIHPEVDPSVITKLRKFFHP-----------FNQKFYQITGRTL 277 (280)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHSCCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHHCCCC
Confidence 3456789999999999998776 6889999999753
No 372
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=26.89 E-value=50 Score=26.14 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHhCcccCC
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQR 157 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqk 157 (209)
.||.||+..++..-++.|+.|..
T Consensus 133 ~fseeql~~~~~~l~~~g~~~~~ 155 (159)
T 1p2x_A 133 SFTDEDVSIIVRRLRQSNVILPN 155 (159)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999988899988653
No 373
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.76 E-value=14 Score=28.85 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCCCHHH-HHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 134 TKFTQEQ-KDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 134 TkFT~EQ-kekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
...|.++ ++.-.+.+.+.| ...++++|.++||++.+|-..|.|+-
T Consensus 9 ~~~~r~~Il~aA~~l~~~~G-------~~s~~~IA~~aGvs~~tlY~hF~~K~ 54 (213)
T 2g7g_A 9 ARLDRERIAEAALELVDRDG-------DFRMPDLARHLNVQVSSIYHHAKGRA 54 (213)
T ss_dssp --CCHHHHHHHHHHHHHHHS-------SCCHHHHHHHTTSCHHHHHTTSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC-------CCCHHHHHHHhCCCHhHHHHHcCCHH
Confidence 3445443 333344444445 55789999999999999988887754
No 374
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=26.72 E-value=35 Score=22.52 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecc
Q 048824 135 KFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfh 182 (209)
....-+++.+....++.| .+.+.|..+||++.+|.-|+.
T Consensus 17 ~l~~~Er~~I~~aL~~~g---------n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEYP---------STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHSC---------SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---------CHHHHHHHhCCCHHHHHHHHH
Confidence 344556677776655542 356889999999999977764
No 375
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=26.59 E-value=14 Score=26.43 Aligned_cols=42 Identities=17% Similarity=0.432 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHhCcccCCCC-HHHHHHHHHHhCCCCceeeeeccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQD-DVALNQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd-~~~ve~fc~eiGv~r~V~KVWfhN 183 (209)
+.+..+++.++....| ++ ...+.+||.+|||++..|+-.+..
T Consensus 8 ~~~~~~~IL~~L~~~~-----pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 8 YQDQEQRILKFLEELG-----EGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHHHHC-----TTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3455555666655542 22 457899999999999988766544
No 376
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=26.55 E-value=1.2e+02 Score=21.48 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGVK 173 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv~ 173 (209)
..+.+..||.+|++.|+..+...--. -.+-+..++..+...+|+.
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 60 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE 60 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 45678999999999999987774210 0124567777777777764
No 377
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=26.48 E-value=17 Score=30.09 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=12.0
Q ss_pred cccccccccccccc
Q 048824 53 SLTCAACGCHRNFH 66 (209)
Q Consensus 53 ~l~CaaCgCHRnFH 66 (209)
.|+|.|||.+|.-.
T Consensus 119 ~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 119 GNSCKACGYRGMLD 132 (170)
T ss_dssp EEEETTTCCCCCSC
T ss_pred EEEccccCCccccc
Confidence 68999999998765
No 378
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.46 E-value=8.7 Score=29.37 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|++.||++.+|-.+|-|+
T Consensus 27 ~~~~s~~~IA~~aGvs~gtlY~yF~sK 53 (209)
T 2gfn_A 27 ISAVTTRAVAEESGWSTGVLNHYFGSR 53 (209)
T ss_dssp GGGCCHHHHHHHHSSCHHHHHHHTSSH
T ss_pred cccCCHHHHHHHHCCCcchHHhcCCCH
Confidence 455689999999999999999999875
No 379
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=26.38 E-value=16 Score=28.01 Aligned_cols=27 Identities=11% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 158 QDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
-+...++++|++.||++.+|=..|.|.
T Consensus 38 ~~~~tv~~Ia~~Agvs~~t~Y~~F~~K 64 (185)
T 3o60_A 38 FESISIKDLCEQARVSRATFYRHHKEI 64 (185)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSST
T ss_pred cccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 566789999999999999998888765
No 380
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=26.34 E-value=44 Score=27.93 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCCceeeeecccccccC
Q 048824 160 DVALNQFCNEVGVKRHVLKVWMHNNKNAS 188 (209)
Q Consensus 160 ~~~ve~fc~eiGv~r~V~KVWfhNnR~k~ 188 (209)
....+.+|++.||+...++-||...|-..
T Consensus 52 ~kL~~ay~er~Gi~~~~~RF~FdG~rI~~ 80 (200)
T 3pge_A 52 RRLMEAFAKRQGKEMDSLRFLYDGIRIQA 80 (200)
T ss_dssp HHHHHHHHHHHSSCGGGEEEEETTEECCT
T ss_pred HHHHHHHHHHhCCChhhEEEEECCEEcCC
Confidence 44556678888999999999999887654
No 381
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=26.31 E-value=33 Score=26.81 Aligned_cols=42 Identities=10% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCHHHHHHHH---HHHHHhCcccCCCCHHHHHHHHHHhCCC-Cceeeeecc
Q 048824 135 KFTQEQKDKML---EFAERIGWRMQRQDDVALNQFCNEVGVK-RHVLKVWMH 182 (209)
Q Consensus 135 kFT~EQkekM~---~faEk~GW~iqkpd~~~ve~fc~eiGv~-r~V~KVWfh 182 (209)
.+|..|.+.++ ++-++.|+. + ..++||+.+||+ ..+|.-|+.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~---p---s~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMP---P---TRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSC---C---CHHHHHHHTTCSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCC---c---cHHHHHHHhCCCChHHHHHHHH
Confidence 47788776544 444555531 1 367899999999 888888875
No 382
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=26.16 E-value=22 Score=24.07 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeee
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKV 179 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KV 179 (209)
..+|..|...|..+.... +.-.+.++|+.+||++.++.-
T Consensus 17 ~~l~~~~~~~l~~l~~~~-------~~~t~~ela~~l~is~~tv~~ 55 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVEIE-------KPITSEELADIFKLSKTTVEN 55 (109)
T ss_dssp HTCCHHHHHHHHHHHHHC-------SCEEHHHHHHHHTCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC-------CCCCHHHHHHHHCcCHHHHHH
Confidence 357888988888876532 224678899999999877643
No 383
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=26.11 E-value=48 Score=23.91 Aligned_cols=28 Identities=7% Similarity=0.319 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCceeeeeccccccc
Q 048824 160 DVALNQFCNEVGVKRHVLKVWMHNNKNA 187 (209)
Q Consensus 160 ~~~ve~fc~eiGv~r~V~KVWfhNnR~k 187 (209)
....+.||++.||+...++.+|...|-.
T Consensus 29 ~kl~~~y~~~~gi~~~~~rf~FdG~~l~ 56 (91)
T 2io0_B 29 SKLMKAYCERQGLSMRQIRFRFDGQPIN 56 (91)
T ss_dssp HHHHHHHHHHTTCCSTTEEEEETTEECC
T ss_pred HHHHHHHHHHhCCCcccEEEEECCEEcC
Confidence 4566778888899999999999888754
No 384
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=25.95 E-value=63 Score=26.53 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHH-HHHHhCcccCCCC-HHHHHHHHHHhCCCCce
Q 048824 135 KFTQEQKDKMLE-FAERIGWRMQRQD-DVALNQFCNEVGVKRHV 176 (209)
Q Consensus 135 kFT~EQkekM~~-faEk~GW~iqkpd-~~~ve~fc~eiGv~r~V 176 (209)
.||.++..+|+. ..+.++|++..+. ..-+..|+..++++...
T Consensus 126 ~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~ 169 (254)
T 2f2c_A 126 CFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDL 169 (254)
T ss_dssp -CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhh
Confidence 589999999998 8899999999877 56788899999987654
No 385
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=25.89 E-value=77 Score=26.11 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHH-HHHHhCcccCCCC-HHHHHHHHHHhCCCC
Q 048824 135 KFTQEQKDKMLE-FAERIGWRMQRQD-DVALNQFCNEVGVKR 174 (209)
Q Consensus 135 kFT~EQkekM~~-faEk~GW~iqkpd-~~~ve~fc~eiGv~r 174 (209)
.||.++..+|+. ..+.++|++..+. ..-+..|+..++++.
T Consensus 113 ~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~ 154 (260)
T 2cch_B 113 TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN 154 (260)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC
T ss_pred CcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh
Confidence 589999999997 8899999999877 678899999988764
No 386
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=25.80 E-value=99 Score=24.33 Aligned_cols=42 Identities=7% Similarity=0.272 Sum_probs=32.8
Q ss_pred CCHHHHHHHHH-HHHHhCcccCCCC-HHHHHHHHHHhCCCCcee
Q 048824 136 FTQEQKDKMLE-FAERIGWRMQRQD-DVALNQFCNEVGVKRHVL 177 (209)
Q Consensus 136 FT~EQkekM~~-faEk~GW~iqkpd-~~~ve~fc~eiGv~r~V~ 177 (209)
++..++.+++. ..+.+||.+...+ ...+.+||+.+|++..+.
T Consensus 77 ~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~ 120 (207)
T 1c9b_A 77 ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQ 120 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHH
Confidence 55666667665 7788999997755 789999999999987643
No 387
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.65 E-value=1.7e+02 Score=20.42 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCCC--Cceeeeec
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGVK--RHVLKVWM 181 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv~--r~V~KVWf 181 (209)
.+..+.+|.+|++.|++.|...--. --+-+..++..+...+|+. ..-|+.+|
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456789999999999977774110 1236678888999998864 34444444
No 388
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=25.59 E-value=11 Score=27.43 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCCceeeeecc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfh 182 (209)
.+.++|..+||+.++|+.|-.
T Consensus 4 ~i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 4 QVKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp CHHHHHHHHSCCHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHH
Confidence 367899999999999999964
No 389
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=25.56 E-value=41 Score=25.52 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHH
Q 048824 134 TKFTQEQKDKMLEFAER 150 (209)
Q Consensus 134 TkFT~EQkekM~~faEk 150 (209)
..+|+||++++.+.+++
T Consensus 89 ~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 89 NILTPEQKKQFNANFEK 105 (108)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 46899999999997766
No 390
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.53 E-value=88 Score=20.97 Aligned_cols=23 Identities=4% Similarity=0.128 Sum_probs=19.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Q 048824 130 KRQRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~G 152 (209)
.-.|-.||.|+-++|.++.++.|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G 28 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG 28 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC
Confidence 34567999999999999999977
No 391
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.38 E-value=31 Score=24.32 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=22.0
Q ss_pred cccccccccccC-CCCcccccccc--cccccccc
Q 048824 38 HANDGCCEFMPR-ADDSLTCAACG--CHRNFHRR 68 (209)
Q Consensus 38 ~~~DGC~Efm~~-~~~~l~CaaCg--CHRnFHr~ 68 (209)
..=|=|++||-. +..+++|..|+ ||+--+.+
T Consensus 29 t~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 29 TFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp CCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred cChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 445789999974 45699999983 66655544
No 392
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=25.36 E-value=90 Score=24.35 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCccc-CCCCHHHHHHHHHHh
Q 048824 139 EQKDKMLEFAERIGWRM-QRQDDVALNQFCNEV 170 (209)
Q Consensus 139 EQkekM~~faEk~GW~i-qkpd~~~ve~fc~ei 170 (209)
+--+.+.+|++..|++| .+.+.++++++|-.|
T Consensus 77 ~Hy~ri~~~l~d~e~Ki~kkl~~ev~~~i~~~~ 109 (116)
T 1yoz_A 77 IHFERLKEFAESKGFKIEKKLDPEVINEIALYI 109 (116)
T ss_dssp HHHHHHHHHHHTTC---CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHH
Confidence 34467889999999999 669999999998765
No 393
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=25.30 E-value=18 Score=27.84 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhCCCC
Q 048824 160 DVALNQFCNEVGVKR 174 (209)
Q Consensus 160 ~~~ve~fc~eiGv~r 174 (209)
...+.+||..+||+.
T Consensus 48 ~~~l~~ia~~~~v~~ 62 (189)
T 2fjr_A 48 YDFAAHCALETGANL 62 (189)
T ss_dssp HHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHCCCH
Confidence 556667777777664
No 394
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.15 E-value=16 Score=29.78 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=12.5
Q ss_pred ccccccccccccccc
Q 048824 53 SLTCAACGCHRNFHR 67 (209)
Q Consensus 53 ~l~CaaCgCHRnFHr 67 (209)
.|+|.|||.+|...-
T Consensus 126 ~l~C~ACGa~~~V~~ 140 (157)
T 2e9h_A 126 GNSCKACGYRGMLDT 140 (157)
T ss_dssp EEECSSSCCEEECCC
T ss_pred EEEccCCCCCCcccc
Confidence 689999999987653
No 395
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=24.94 E-value=19 Score=24.33 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=34.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccC---CCCHHHHHHHHHHhCCCCceeeeecc
Q 048824 131 RQRTKFTQEQKDKMLEFAERIGWRMQ---RQDDVALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 131 R~RTkFT~EQkekM~~faEk~GW~iq---kpd~~~ve~fc~eiGv~r~V~KVWfh 182 (209)
..-..++.++++.|...|...- .. +-+..++..+...+|++...++.+|.
T Consensus 16 ~~~~~l~~~~~~~l~~~F~~~D--~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 16 FQGADGDGEELARLRSVFAACD--ANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHHHC--TTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHC--CCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 3445788999999999777642 22 24567888888889987776666654
No 396
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=24.75 E-value=21 Score=26.65 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHhCCCC
Q 048824 158 QDDVALNQFCNEVGVKR 174 (209)
Q Consensus 158 pd~~~ve~fc~eiGv~r 174 (209)
++...+..||..+||+.
T Consensus 81 ~s~~~l~~ia~~Lgv~~ 97 (120)
T 2o38_A 81 FSVERLMTLLNALDQDV 97 (120)
T ss_dssp CCHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHhCCCc
Confidence 34555555555555543
No 397
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=24.73 E-value=1.3e+02 Score=25.20 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHH-HHHHhCcccCCCC-HHHHHHHHHHhCCCCc
Q 048824 135 KFTQEQKDKMLE-FAERIGWRMQRQD-DVALNQFCNEVGVKRH 175 (209)
Q Consensus 135 kFT~EQkekM~~-faEk~GW~iqkpd-~~~ve~fc~eiGv~r~ 175 (209)
.||.++..+||. .-..++|++..+. ..-+..|...++++..
T Consensus 123 ~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~ 165 (252)
T 1f5q_B 123 ATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRE 165 (252)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcc
Confidence 589999999998 8999999999987 4667888888887654
No 398
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=24.61 E-value=7.7 Score=30.22 Aligned_cols=9 Identities=56% Similarity=1.114 Sum_probs=6.5
Q ss_pred eeeeccccc
Q 048824 177 LKVWMHNNK 185 (209)
Q Consensus 177 ~KVWfhNnR 185 (209)
|||||||--
T Consensus 54 vkvwmqnle 62 (127)
T 2jpf_A 54 VKVWMQNLE 62 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578888843
No 399
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=24.59 E-value=70 Score=26.61 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHH-HHHHhCcccCCCC-HHHHHHHHHHhCCCCce
Q 048824 135 KFTQEQKDKMLE-FAERIGWRMQRQD-DVALNQFCNEVGVKRHV 176 (209)
Q Consensus 135 kFT~EQkekM~~-faEk~GW~iqkpd-~~~ve~fc~eiGv~r~V 176 (209)
.||.+++-+|+. ..+.++|++..+. ..-+..|+..++++..+
T Consensus 112 ~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~ 155 (269)
T 2b9r_A 112 TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQ 155 (269)
T ss_dssp SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHH
Confidence 489999999998 8899999999877 56788898888876543
No 400
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=24.58 E-value=22 Score=29.39 Aligned_cols=46 Identities=13% Similarity=0.308 Sum_probs=32.9
Q ss_pred CCCHHHH-HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 135 KFTQEQK-DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 135 kFT~EQk-ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
..|.+++ +.-.+.+.+.| -+...++++|+++||++.+|-..|.|+-
T Consensus 26 ~~tr~~Il~AA~~L~~e~G-----~~~~Smr~IA~~aGVs~~tlY~hF~~K~ 72 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEG-----VEAASMRRVAAELGAGTMSLYYYVPTKE 72 (267)
T ss_dssp EECHHHHHHHHHHHHHHHC-----TTTCCHHHHHHHHTCCHHHHHTTCCSHH
T ss_pred cccHHHHHHHHHHHHHhcC-----cccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 5666653 33344445545 4556789999999999999998888764
No 401
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=24.54 E-value=11 Score=29.55 Aligned_cols=27 Identities=11% Similarity=0.450 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 159 DDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 159 d~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+...+.++|+++||++.+|-..|.|+-
T Consensus 25 ~~~s~~~IA~~aGvs~~tlY~~F~sK~ 51 (220)
T 1z0x_A 25 EQLSMRKVAKQLGVQAPAIYWYFKNKQ 51 (220)
T ss_dssp GGCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred ccCCHHHHHHHcCCCHHHHHHhcCCHH
Confidence 456799999999999999999998854
No 402
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=24.37 E-value=75 Score=23.32 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=17.6
Q ss_pred HHHHHHhCcccCCCCHHHHHHHHHHhCCC
Q 048824 145 LEFAERIGWRMQRQDDVALNQFCNEVGVK 173 (209)
Q Consensus 145 ~~faEk~GW~iqkpd~~~ve~fc~eiGv~ 173 (209)
.++|++.| -+..+|-+||..||.+
T Consensus 43 ~elA~~~~-----vS~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 43 NEISALAN-----SSDAAVIRLCXSLGLK 66 (111)
T ss_dssp HHHHHHTT-----CCHHHHHHHHHHTTCS
T ss_pred HHHHHHHC-----CCHHHHHHHHHHcCCC
Confidence 44566653 6778888888888877
No 403
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=24.27 E-value=52 Score=25.43 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=18.2
Q ss_pred CC-CCCHHHHHHHHHHHHHhCccc
Q 048824 133 RT-KFTQEQKDKMLEFAERIGWRM 155 (209)
Q Consensus 133 RT-kFT~EQkekM~~faEk~GW~i 155 (209)
|| ..++|.+++++++++++|+..
T Consensus 160 R~~~l~~e~~~~f~~~~~~~G~~~ 183 (198)
T 3cbc_A 160 RTKELTSELKENFIRFSKSLGLPE 183 (198)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCH
Confidence 44 489999999999988887653
No 404
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.24 E-value=52 Score=24.38 Aligned_cols=28 Identities=7% Similarity=0.316 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCCceeeeecccccccC
Q 048824 161 VALNQFCNEVGVKRHVLKVWMHNNKNAS 188 (209)
Q Consensus 161 ~~ve~fc~eiGv~r~V~KVWfhNnR~k~ 188 (209)
...+.||++.||+...++.+|..+|-..
T Consensus 49 kL~~~y~ek~gi~~~~~rf~FdG~~l~~ 76 (104)
T 1wz0_A 49 KLMKAYCERQGLSMRQIRFRFDGQPINE 76 (104)
T ss_dssp HHHHHHHHHHTCCTTTSCEESSSSBCCT
T ss_pred HHHHHHHHHhCCCcceEEEEECCEEcCC
Confidence 3556677778899999999998877543
No 405
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=24.21 E-value=1.8e+02 Score=20.17 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=31.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCCC
Q 048824 129 SKRQRTKFTQEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGVK 173 (209)
Q Consensus 129 kKR~RTkFT~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv~ 173 (209)
....++.||++|++.|+..|...--. -.+-+..++..+...+|+.
T Consensus 10 ~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 55 (161)
T 3fwb_A 10 SGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFE 55 (161)
T ss_dssp TTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 34467889999999999987764211 1124567788888887754
No 406
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=24.15 E-value=54 Score=23.63 Aligned_cols=29 Identities=7% Similarity=0.311 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCceeeeecccccccC
Q 048824 160 DVALNQFCNEVGVKRHVLKVWMHNNKNAS 188 (209)
Q Consensus 160 ~~~ve~fc~eiGv~r~V~KVWfhNnR~k~ 188 (209)
....+.||++.||+...++.+|..+|-..
T Consensus 31 ~kl~~~y~~~~gi~~~~~rf~FdG~~l~~ 59 (94)
T 2io1_B 31 SKLMKAYCERQGLSMRQIRFRFDGQPINE 59 (94)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred HHHHHHHHHHhCCCcccEEEEECCEEcCC
Confidence 45667778888999999999999887543
No 407
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.10 E-value=27 Score=24.76 Aligned_cols=35 Identities=6% Similarity=-0.001 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecc
Q 048824 140 QKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMH 182 (209)
Q Consensus 140 QkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfh 182 (209)
+++.+....++.||. +.+.|..+||++.+|..|+.
T Consensus 52 E~~~i~~aL~~~~gn--------~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 52 ERTLLTTALRHTQGH--------KQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHTTTC--------TTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------HHHHHHHHCcCHHHHHHHHH
Confidence 444455555555543 34789999999999977664
No 408
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=23.98 E-value=1.1e+02 Score=21.90 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
++.||+++|-+. .-+-|.+++||+...+-|=|..-
T Consensus 68 ~~~e~~~~l~~~--------------i~~~l~~~Lgi~~~riyI~f~d~ 102 (114)
T 4dh4_A 68 ITSSTNCKIAAA--------------LSAACERHLGVPKNRIYTTFTNK 102 (114)
T ss_dssp CCHHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEEE
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcCcccEEEEEEeC
Confidence 468999998764 33457889999999999988764
No 409
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=23.75 E-value=45 Score=31.19 Aligned_cols=34 Identities=6% Similarity=0.403 Sum_probs=26.2
Q ss_pred cccCCCC--HHHHHHHHHHhCCCCceeeeecccccc
Q 048824 153 WRMQRQD--DVALNQFCNEVGVKRHVLKVWMHNNKN 186 (209)
Q Consensus 153 W~iqkpd--~~~ve~fc~eiGv~r~V~KVWfhNnR~ 186 (209)
+|+.+.. .+..+++|+++|++...++.|.-.+|+
T Consensus 40 ~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~Rq 75 (530)
T 2ylm_A 40 FKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARS 75 (530)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECT
T ss_pred EEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCC
Confidence 4555533 556889999999999999999776553
No 410
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=23.29 E-value=14 Score=28.40 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhC-----CCCceeeeecccccccCCC
Q 048824 134 TKFTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVG-----VKRHVLKVWMHNNKNASHR 190 (209)
Q Consensus 134 TkFT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiG-----v~r~V~KVWfhNnR~k~kk 190 (209)
-.+|.-+.+.|.-+++..| ..-..+++++.++ ++.++|++...|=|.|+..
T Consensus 158 ~~Lt~rE~~vL~~l~~g~~------~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 158 VDLTKREFDLLAVLAEHKT------AVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCCHHHHHHHHHHHHTTT------CCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred eccCHHHHHHHHHHHhCCC------CeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 4599999999998887743 1235678888888 9999999999998888764
No 411
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=23.19 E-value=59 Score=24.12 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHhCccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRM 155 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~i 155 (209)
.+++|.+++++++|+.+|+..
T Consensus 122 ~l~~e~~~~f~~~~~~~G~~~ 142 (156)
T 1bj7_A 122 SFTPEELEKYQQLNSERGVPN 142 (156)
T ss_dssp CCCHHHHHHHHHHHHHHTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 378999999999988888644
No 412
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=23.06 E-value=14 Score=27.00 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCCceeeeeccc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhN 183 (209)
.+.++|..+||+.++|+.|-..
T Consensus 3 ~i~e~A~~~gvs~~tLR~ye~~ 24 (108)
T 2vz4_A 3 SVGQVAGFAGVTVRTLHHYDDI 24 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 3678999999999999999643
No 413
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=23.02 E-value=1.6e+02 Score=18.92 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGVK 173 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv~ 173 (209)
..+.||++|+++|+..|...--. -.+-+..++..+...+|+.
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 4 KARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp CCCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCC
Confidence 34568888888888866653210 0135577888888888854
No 414
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=23.01 E-value=24 Score=25.80 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCCceeeeeccc
Q 048824 162 ALNQFCNEVGVKRHVLKVWMHN 183 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWfhN 183 (209)
..++||..+||++.+|.-|=.+
T Consensus 51 TQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 51 TQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTT
T ss_pred CHHHHHHHcCCCHHHHHHHHCC
Confidence 4567777777777777776544
No 415
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=22.98 E-value=94 Score=24.28 Aligned_cols=37 Identities=8% Similarity=0.184 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNKNA 187 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR~k 187 (209)
|.|||+.|.+- ..+.+...+|++..-|.|.|......
T Consensus 74 t~eqK~~L~~~--------------I~~~l~~~~g~~~edV~V~i~e~~~~ 110 (149)
T 3mf7_A 74 SADLKGQLAQR--------------IVDDVSVAAEIDRKHIWVYFGEMPAQ 110 (149)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHHTTCCGGGEEEEEEEECGG
T ss_pred CHHHHHHHHHH--------------HHHHHHHHcCCChhhEEEEEEEcCHH
Confidence 57998876653 56678899999999999998776643
No 416
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.78 E-value=86 Score=24.45 Aligned_cols=36 Identities=25% Similarity=0.560 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCccc----CCCCHHHHHHHHHHhCCC
Q 048824 138 QEQKDKMLEFAERIGWRM----QRQDDVALNQFCNEVGVK 173 (209)
Q Consensus 138 ~EQkekM~~faEk~GW~i----qkpd~~~ve~fc~eiGv~ 173 (209)
..-+..|.++..++||++ |..|+.+.++|-..|.-.
T Consensus 61 kqllkemlelisklgykvflllqdqdeneleefkrkiesq 100 (134)
T 2lci_A 61 KQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQ 100 (134)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhC
Confidence 345677888899999985 779999999999888544
No 417
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=22.64 E-value=25 Score=22.01 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=19.6
Q ss_pred ccccccccccC-CCCcccccccc--cccccc
Q 048824 39 ANDGCCEFMPR-ADDSLTCAACG--CHRNFH 66 (209)
Q Consensus 39 ~~DGC~Efm~~-~~~~l~CaaCg--CHRnFH 66 (209)
.=|=|+++|-. +..+++|..|+ ||+.-+
T Consensus 13 ~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~ 43 (50)
T 1ptq_A 13 FCDHCGSLLWGLVKQGLKCEDCGMNVHHKCR 43 (50)
T ss_dssp BCTTTCCBCCSSSSCEEEETTTCCEECHHHH
T ss_pred CcCCCCceeeccCCccCEeCCCCCeECHHHh
Confidence 34679999954 35699999984 565444
No 418
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=22.63 E-value=1.1e+02 Score=28.55 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=29.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCcccCC---CCHHHHHHHHHHhCCC
Q 048824 131 RQRTKFTQEQKDKMLEFAERIGWRMQR---QDDVALNQFCNEVGVK 173 (209)
Q Consensus 131 R~RTkFT~EQkekM~~faEk~GW~iqk---pd~~~ve~fc~eiGv~ 173 (209)
-.|..||+||++.|++.|...- ..+ -+..++..+...+|+.
T Consensus 291 Ps~E~Lt~EEI~ELREaF~~fD--kDgdG~IS~eELk~aLrsLG~~ 334 (440)
T 3u0k_A 291 PTRDQLTEEQIAEFKEAFSLFD--KDGDGTITTKELGTVMRSLGQN 334 (440)
T ss_dssp CBCBCCCHHHHHHHHHHHHHHC--TTCSSEECHHHHHHHHHHTTCC
T ss_pred hhHhhhhHHHHHHHHHHHHHHc--CCCCCEECHHHHHHHHHHcCCC
Confidence 4688999999999999777632 222 4466677777777764
No 419
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=22.59 E-value=46 Score=28.52 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 048824 131 RQRTKFTQEQKDKMLEFAE 149 (209)
Q Consensus 131 R~RTkFT~EQkekM~~faE 149 (209)
.-++.||+.|+++|..+.+
T Consensus 236 ~C~~~FT~gQ~~RM~~~~~ 254 (262)
T 2cki_A 236 KCMVMFTQGQATRVNACLD 254 (262)
T ss_dssp TTCCBCBHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHH
Confidence 3578999999999998755
No 420
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.40 E-value=31 Score=24.10 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=22.9
Q ss_pred cccccccccccC-CCCccccccc--cccccccccc
Q 048824 38 HANDGCCEFMPR-ADDSLTCAAC--GCHRNFHRRE 69 (209)
Q Consensus 38 ~~~DGC~Efm~~-~~~~l~CaaC--gCHRnFHr~e 69 (209)
..=|=|++||-. ....|+|..| .||+--+.+.
T Consensus 35 t~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v 69 (77)
T 2enn_A 35 TFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKV 69 (77)
T ss_dssp EECSSSCCEECCTTCCEEECSSSCCEEESGGGSSC
T ss_pred cCccccChhhccccccccCcCCCCCcCCHhHHhhC
Confidence 344779999985 4568999998 4776666543
No 421
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=22.30 E-value=1.4e+02 Score=18.92 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCcccCC---CCHHHHHHHHHHhCCC
Q 048824 132 QRTKFTQEQKDKMLEFAERIGWRMQR---QDDVALNQFCNEVGVK 173 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~GW~iqk---pd~~~ve~fc~eiGv~ 173 (209)
....||.++++.|...|... -... -+..++..+...+|+.
T Consensus 4 ~~~~l~~~~~~~l~~~F~~~--D~d~~G~i~~~el~~~l~~~g~~ 46 (85)
T 2ktg_A 4 QKKVLTAEEQQEYKEAFQLF--DKDNDNKLTAEELGTVMRALGAN 46 (85)
T ss_dssp CCCSSSHHHHHHHHHHHHHT--CTTCCSEEEHHHHHHHHHTTSSC
T ss_pred hhhhCCHHHHHHHHHHHHHH--CCCCCCcCcHHHHHHHHHHhCCC
Confidence 34578999999999877663 2221 3456777777777743
No 422
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=21.75 E-value=68 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 137 TQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 137 T~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
|.|||++|.+- ..+.+ ..+|++..-|.|.+.-+
T Consensus 77 t~EqK~~L~~~--------------it~~l-~~lg~~~~~v~V~i~E~ 109 (136)
T 3mlc_A 77 TIETKQRVFAA--------------ITESL-APIGVAGSDVFIAITEN 109 (136)
T ss_dssp CHHHHHHHHHH--------------HHHHH-TTTTCCGGGEEEEEEEE
T ss_pred CHHHHHHHHHH--------------HHHHH-HHcCCCcccEEEEEEEc
Confidence 68999998764 45667 88999999999888654
No 423
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.67 E-value=37 Score=24.06 Aligned_cols=32 Identities=16% Similarity=0.415 Sum_probs=22.0
Q ss_pred CcccccccccccC-CCCccccccc--ccccccccc
Q 048824 37 GHANDGCCEFMPR-ADDSLTCAAC--GCHRNFHRR 68 (209)
Q Consensus 37 g~~~DGC~Efm~~-~~~~l~CaaC--gCHRnFHr~ 68 (209)
-..=|=|+.||-. ....++|..| .||+.-+.+
T Consensus 28 pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 28 PTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp CCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 3456789999964 3469999988 366555543
No 424
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=21.67 E-value=78 Score=23.78 Aligned_cols=27 Identities=11% Similarity=0.458 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCCCceeeeeccccccc
Q 048824 161 VALNQFCNEVGVKRHVLKVWMHNNKNA 187 (209)
Q Consensus 161 ~~ve~fc~eiGv~r~V~KVWfhNnR~k 187 (209)
...+.||+..||+...++.+|...|-.
T Consensus 51 kL~~ay~ek~gi~~~~~rfiFdG~~L~ 77 (110)
T 2k8h_A 51 KLIDTYCKKQGISRNSVRFLFDGTPID 77 (110)
T ss_dssp HHHHHHHHHHTCCSSSCEEESSSCBCC
T ss_pred HHHHHHHHHhCCCcccEEEEECCEEcC
Confidence 345566777788888889998777643
No 425
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=21.54 E-value=1.1e+02 Score=23.09 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeeccccc
Q 048824 136 FTQEQKDKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNNK 185 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNnR 185 (209)
+|.||+++|-+. .-+-|.+++||+...+-|-|.+-.
T Consensus 89 ~~~e~n~~~s~~--------------i~~~l~~~LgI~~~rvyI~f~d~~ 124 (133)
T 3fwt_A 89 YAPSKPKMMTPR--------------IAAAITKECGIPAERIYVFYYSTK 124 (133)
T ss_dssp CCTHHHHHHHHH--------------HHHHHHHHHCCCGGGEEEEEEEES
T ss_pred CCHHHHHHHHHH--------------HHHHHHHHhCcChhhEEEEEEEhh
Confidence 478999888764 345588999999999999988765
No 426
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=21.53 E-value=15 Score=28.65 Aligned_cols=38 Identities=18% Similarity=0.494 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHHhCCCCceeeeecccc
Q 048824 142 DKMLEFAERIGWRMQRQDDVALNQFCNEVGVKRHVLKVWMHNN 184 (209)
Q Consensus 142 ekM~~faEk~GW~iqkpd~~~ve~fc~eiGv~r~V~KVWfhNn 184 (209)
+...+.+.+.|| +...++++|.+.||++.+|-..|.|+
T Consensus 14 ~aA~~l~~~~G~-----~~~tv~~Ia~~agvs~~t~y~~F~~K 51 (213)
T 3ni7_A 14 DTAVELAAHTSW-----EAVRLYDIAARLAVSLDEIRLYFREK 51 (213)
T ss_dssp HHHHHHHHHSCS-----TTCCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHcCc-----cccCHHHHHHHhCCCHHHHHHHCCCH
Confidence 333344445454 45679999999999999998888764
No 427
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=21.37 E-value=84 Score=19.99 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=18.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC
Q 048824 132 QRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~G 152 (209)
.|..||.|+-+.|.+..++.|
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G 21 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYG 21 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHC
Confidence 367899999999999999987
No 428
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=21.27 E-value=81 Score=23.94 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHhCcccCC
Q 048824 136 FTQEQKDKMLEFAERIGWRMQR 157 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~iqk 157 (209)
++++.+++++++++++||.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~G~~~~~ 154 (174)
T 2hzq_A 133 LPPETVDSLKNILTSNNIDVKK 154 (174)
T ss_dssp CCHHHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 6899999999999998876543
No 429
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=21.20 E-value=84 Score=24.54 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=31.7
Q ss_pred CCHHHHHHHHH-HHHHhCcccCC--CC-HHHHHHHHHHhCCCCcee
Q 048824 136 FTQEQKDKMLE-FAERIGWRMQR--QD-DVALNQFCNEVGVKRHVL 177 (209)
Q Consensus 136 FT~EQkekM~~-faEk~GW~iqk--pd-~~~ve~fc~eiGv~r~V~ 177 (209)
++..++.+++. +.+.+||.+.. .+ ..-+.+||+.+|++..|.
T Consensus 81 v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~ 126 (200)
T 1ais_B 81 VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVR 126 (200)
T ss_dssp SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHH
Confidence 45566666555 77789998876 55 678999999999997653
No 430
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=21.03 E-value=69 Score=23.91 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHhCccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRM 155 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~i 155 (209)
..+.|.+++++++++++|+..
T Consensus 126 ~~~~~~~~~f~~~~~~~G~~~ 146 (162)
T 3o22_A 126 TPRAELKEKFTAFCKAQGFTE 146 (162)
T ss_dssp SCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 478999999999988888644
No 431
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=21.03 E-value=96 Score=22.80 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=17.3
Q ss_pred HHHHHHhCcccCCCCHHHHHHHHHHhCCC
Q 048824 145 LEFAERIGWRMQRQDDVALNQFCNEVGVK 173 (209)
Q Consensus 145 ~~faEk~GW~iqkpd~~~ve~fc~eiGv~ 173 (209)
.++|++.| -+..+|-+||..||.+
T Consensus 39 ~elA~~~~-----vS~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 39 QEIANQLE-----TSSTSIIRLSKKVTPG 62 (107)
T ss_dssp HHHHHHHT-----SCHHHHHHHHHHHSTT
T ss_pred HHHHHHHC-----CCHHHHHHHHHHhCCC
Confidence 45566653 6778888888888876
No 432
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.86 E-value=17 Score=23.96 Aligned_cols=20 Identities=10% Similarity=0.406 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCCceeeeec
Q 048824 162 ALNQFCNEVGVKRHVLKVWM 181 (209)
Q Consensus 162 ~ve~fc~eiGv~r~V~KVWf 181 (209)
..++||..+||++..|--|.
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 46889999999999999998
No 433
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.79 E-value=40 Score=28.97 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCcccCCCCH--HHHHHHHHHhCCCCce
Q 048824 142 DKMLEFAERIGWRMQRQDD--VALNQFCNEVGVKRHV 176 (209)
Q Consensus 142 ekM~~faEk~GW~iqkpd~--~~ve~fc~eiGv~r~V 176 (209)
+.|++||.+..=.|.+... ..-++.|..|||+.=.
T Consensus 21 ~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPla 57 (234)
T 3cuq_A 21 TNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLA 57 (234)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHcccccccCHHHHHHHHHHHHHcCCCccc
Confidence 4567799987544544222 4778889999999654
No 434
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=20.64 E-value=85 Score=19.70 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC
Q 048824 132 QRTKFTQEQKDKMLEFAERIG 152 (209)
Q Consensus 132 ~RTkFT~EQkekM~~faEk~G 152 (209)
.|..||.|+-++|.++.++.|
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G 22 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNG 22 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 367899999999999988876
No 435
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=20.48 E-value=2.1e+02 Score=19.48 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCC
Q 048824 136 FTQEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGV 172 (209)
Q Consensus 136 FT~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv 172 (209)
||++|+++++..+...--. -.+-+..++..+...+|+
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~ 39 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQ 39 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC
Confidence 5677777777655542100 011334555555555554
No 436
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=20.36 E-value=76 Score=21.33 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHhCCCCceeeee
Q 048824 133 RTKFTQEQKDKMLEFAERIGWR-MQRQDDVALNQFCNEVGVKRHVLKVW 180 (209)
Q Consensus 133 RTkFT~EQkekM~~faEk~GW~-iqkpd~~~ve~fc~eiGv~r~V~KVW 180 (209)
||.||.|.=+.|.+|..+..=. ..-.....=++|++ .-++.++.+-|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~-~~~~~HtwqSw 49 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK-SSLTQHSWQSL 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH-SCSSSCCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHH-hHCCCCCHHHH
Confidence 8999999999999988774100 01123456677766 23677777666
No 437
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=20.17 E-value=22 Score=29.22 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh--Cccc--CCCCHHHHHHHHHHhCCCCc
Q 048824 130 KRQRTKFTQEQKDKMLEFAERI--GWRM--QRQDDVALNQFCNEVGVKRH 175 (209)
Q Consensus 130 KR~RTkFT~EQkekM~~faEk~--GW~i--qkpd~~~ve~fc~eiGv~r~ 175 (209)
-|..-.+|++|+.+........ .|.. ..|+...+.+||..+||+..
T Consensus 38 ~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~ 87 (311)
T 4ich_A 38 LIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVN 87 (311)
T ss_dssp --------------------------------------------------
T ss_pred HHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChh
Confidence 4444556666555544321110 1221 12667788888888888753
No 438
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.04 E-value=39 Score=23.11 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHH
Q 048824 136 FTQEQKDKMLEFAER 150 (209)
Q Consensus 136 FT~EQkekM~~faEk 150 (209)
+|.+|++++++.|..
T Consensus 3 ls~~~~~~~~~~F~~ 17 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKT 17 (92)
T ss_dssp CCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHH
Confidence 455666666554443
No 439
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=20.01 E-value=74 Score=23.47 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHhCccc
Q 048824 135 KFTQEQKDKMLEFAERIGWRM 155 (209)
Q Consensus 135 kFT~EQkekM~~faEk~GW~i 155 (209)
.+++|.+++++++++.+|+..
T Consensus 122 ~l~~~~~~~~~~~~~~~G~~~ 142 (164)
T 1epa_A 122 DDNGEALYNFRKITSDHGFSE 142 (164)
T ss_dssp SCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 378999999999999988754
Done!