Query 048825
Match_columns 171
No_of_seqs 174 out of 1128
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 13:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00689 Cation_ATPase_C: Cati 100.0 1.7E-35 3.6E-40 222.4 14.6 156 1-157 16-182 (182)
2 TIGR01522 ATPase-IIA2_Ca golgi 100.0 3.4E-29 7.5E-34 226.2 17.2 159 1-161 722-883 (884)
3 KOG0202 Ca2+ transporting ATPa 100.0 2.5E-30 5.5E-35 224.2 6.0 160 1-161 782-969 (972)
4 TIGR01523 ATPase-IID_K-Na pota 100.0 2.1E-28 4.6E-33 223.6 16.1 160 1-162 855-1049(1053)
5 TIGR01116 ATPase-IIA1_Ca sarco 100.0 5.7E-28 1.2E-32 219.0 17.5 158 1-159 734-917 (917)
6 TIGR01517 ATPase-IIB_Ca plasma 99.9 4.3E-27 9.3E-32 213.8 16.7 158 1-158 773-939 (941)
7 KOG0204 Calcium transporting A 99.9 1.3E-27 2.9E-32 207.5 4.7 165 1-165 843-1013(1034)
8 TIGR01106 ATPase-IIC_X-K sodiu 99.9 1.2E-24 2.5E-29 198.8 17.8 159 1-160 788-985 (997)
9 KOG0203 Na+/K+ ATPase, alpha s 99.9 3.6E-25 7.8E-30 192.3 4.4 165 1-166 810-1013(1019)
10 PRK15122 magnesium-transportin 99.9 4.5E-21 9.7E-26 173.7 15.9 151 1-160 741-897 (903)
11 PRK10517 magnesium-transportin 99.8 3.1E-18 6.7E-23 155.3 14.2 147 1-161 741-898 (902)
12 TIGR01524 ATPase-IIIB_Mg magne 99.8 5.7E-18 1.2E-22 153.2 14.9 147 1-160 706-862 (867)
13 COG0474 MgtA Cation transport 99.7 8.1E-17 1.7E-21 146.4 16.2 155 1-156 744-912 (917)
14 TIGR01657 P-ATPase-V P-type AT 99.4 5.8E-12 1.3E-16 116.5 11.6 133 1-139 901-1049(1054)
15 TIGR01647 ATPase-IIIA_H plasma 98.9 1.1E-08 2.3E-13 92.2 11.7 108 1-119 637-752 (755)
16 TIGR01652 ATPase-Plipid phosph 98.0 8.5E-05 1.8E-09 69.5 12.4 53 1-53 875-933 (1057)
17 PF06570 DUF1129: Protein of u 88.2 9.8 0.00021 29.0 12.4 15 16-30 60-74 (206)
18 KOG0210 P-type ATPase [Inorgan 87.3 5.4 0.00012 36.4 9.0 91 66-167 955-1047(1051)
19 KOG0209 P-type ATPase [Inorgan 83.1 41 0.00089 31.6 13.9 147 11-164 988-1154(1160)
20 KOG0208 Cation transport ATPas 68.1 16 0.00035 34.5 6.2 126 5-135 956-1096(1140)
21 PLN03190 aminophospholipid tra 67.9 1.3E+02 0.0027 29.5 14.2 28 26-53 1009-1036(1178)
22 PF10183 ESSS: ESSS subunit of 66.1 26 0.00056 23.8 5.6 43 12-55 36-78 (105)
23 PRK05470 fumarate reductase su 49.7 87 0.0019 21.9 6.4 13 19-31 1-13 (118)
24 TIGR00383 corA magnesium Mg(2+ 40.1 91 0.002 25.0 5.8 23 137-159 292-314 (318)
25 PF11804 DUF3325: Protein of u 38.7 12 0.00026 25.6 0.3 24 3-26 11-34 (106)
26 PF06609 TRI12: Fungal trichot 36.4 3.2E+02 0.007 24.6 14.5 70 34-103 234-309 (599)
27 COG4280 Predicted membrane pro 34.4 1.7E+02 0.0038 22.6 5.9 56 102-159 33-88 (236)
28 KOG2802 Membrane protein HUEL 33.0 2.4E+02 0.0052 24.1 7.0 79 78-156 247-339 (503)
29 PRK11085 magnesium/nickel/coba 26.2 1.8E+02 0.0038 23.9 5.3 10 12-21 156-165 (316)
30 COG1585 Membrane protein impli 24.8 2.3E+02 0.0049 20.3 5.0 16 148-163 60-75 (140)
31 PF02313 Fumarate_red_D: Fumar 24.7 11 0.00023 26.4 -1.8 13 19-31 1-13 (118)
32 PF05297 Herpes_LMP1: Herpesvi 24.6 25 0.00054 28.7 0.0 7 20-26 13-19 (381)
33 PF06422 PDR_CDR: CDR ABC tran 24.2 1.1E+02 0.0024 20.5 3.2 8 103-110 48-55 (103)
34 PF14316 DUF4381: Domain of un 23.9 1E+02 0.0022 21.9 3.2 12 131-142 18-29 (146)
35 PF13829 DUF4191: Domain of un 23.7 3.6E+02 0.0078 21.1 7.5 12 78-89 10-21 (224)
36 PF13493 DUF4118: Domain of un 23.0 1.8E+02 0.0038 19.0 4.0 31 130-160 75-105 (105)
37 PF05570 DUF765: Circovirus pr 22.9 37 0.0008 17.0 0.4 14 12-25 8-21 (29)
38 PHA00726 hypothetical protein 22.7 35 0.00076 22.4 0.4 18 20-37 26-44 (89)
39 PRK06231 F0F1 ATP synthase sub 22.6 1.5E+02 0.0033 22.5 4.0 26 94-119 39-64 (205)
40 PF11286 DUF3087: Protein of u 22.4 3.3E+02 0.0072 20.2 5.6 11 121-131 35-45 (165)
41 PF12555 TPPK_C: Thiamine pyro 22.3 67 0.0015 18.9 1.6 15 120-134 34-48 (53)
42 PF10856 DUF2678: Protein of u 21.1 53 0.0012 22.9 1.1 39 123-161 48-86 (118)
43 PRK09546 zntB zinc transporter 20.9 2.9E+02 0.0062 22.4 5.6 7 123-129 280-286 (324)
44 PF12725 DUF3810: Protein of u 20.8 2E+02 0.0043 23.6 4.5 26 122-147 13-38 (318)
45 PF08552 Kei1: Inositolphospho 20.7 3.8E+02 0.0083 20.3 6.8 41 120-160 28-68 (189)
46 COG1826 TatA Sec-independent p 20.4 91 0.002 20.6 2.1 18 132-149 4-21 (94)
47 PF10746 Phage_holin_6: Phage 20.0 1.8E+02 0.004 18.1 3.2 15 130-144 29-43 (66)
No 1
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=100.00 E-value=1.7e-35 Score=222.35 Aligned_cols=156 Identities=35% Similarity=0.568 Sum_probs=133.4
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc-------chhhHHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFSVNES-------VKDTMIF 73 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~~-------~a~T~~F 73 (171)
+|++||+++++||+|+|+|+||||+++|+++|++++.+++.+|.+++++++..|++.....|.+.. ++||++|
T Consensus 16 ~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~T~~F 95 (182)
T PF00689_consen 16 TDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLYIFGWDEETNNDNLAQAQTMAF 95 (182)
T ss_dssp TTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHHSTCSSSHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999887754455443 4999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccc--ccccCHHHHHHHHHHHHHHHHHH--HHhhhhhccccCChhHHHHHHHHHHHHHH
Q 048825 74 NTFVFCQIFNEFNARKLEKKNIFK--GIHKNKLFLAIIGITIVLQLIMV--EFLKKFADTERLNWGQWAACIGIAAMSWP 149 (171)
Q Consensus 74 ~~lv~~q~~~~~~~Rs~~~~~~~~--~~~~N~~l~~~~~~~~~l~~~~v--p~~~~~f~~~~l~~~~w~~~~~~~~~~~~ 149 (171)
++++++|++|.+++|+.+ ++.++ +.++|+++++++++++++|++++ |+++++|++.|+++.+|+++++.+++.++
T Consensus 96 ~~lv~~q~~~~~~~r~~~-~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~~~~~~~~ 174 (182)
T PF00689_consen 96 TALVLSQLFNAFNCRSRR-RSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLALALLPFI 174 (182)
T ss_dssp HHHHHHHHHHHHHTSSSS-STCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHHHHCHHHH
T ss_pred HHHHHHHHhhhccccccc-ccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999964 56554 77899999999999999999876 56999999999999999999999999999
Q ss_pred HHHHHHhh
Q 048825 150 IGFLFKCI 157 (171)
Q Consensus 150 ~~e~~K~~ 157 (171)
++|++|++
T Consensus 175 ~~ei~K~i 182 (182)
T PF00689_consen 175 VDEIRKLI 182 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
Confidence 99999985
No 2
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.96 E-value=3.4e-29 Score=226.24 Aligned_cols=159 Identities=27% Similarity=0.355 Sum_probs=142.0
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccchhhHHHHHHHHHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFSVNESVKDTMIFNTFVFCQ 80 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~~~a~T~~F~~lv~~q 80 (171)
+|.+||++|+.||||+++|+||||+++++++++.++.+++.+|+++++++++.|++... .+....+++|++|++++++|
T Consensus 722 ~d~~~a~~l~~e~~~~~~m~~~P~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~t~~f~~~v~~q 800 (884)
T TIGR01522 722 MDGPPAQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKILVSAIIIVVGTLFVFVREMQ-DGVITARDTTMTFTCFVFFD 800 (884)
T ss_pred HHhhHHHHhccCCCChhHhhCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcchhhHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988888776542 12223468999999999999
Q ss_pred HHHHHHhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHHH--HHhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhh
Q 048825 81 IFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIMV--EFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCI 157 (171)
Q Consensus 81 ~~~~~~~Rs~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~v--p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~ 157 (171)
++|.++||+. +.++|+ +.++|++++.++++++++|++++ |+++++|+++|+++.+|+++++++++.+++.|++|++
T Consensus 801 ~~~~~~~r~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~ 879 (884)
T TIGR01522 801 MFNALACRSQ-TKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEALSIKDLLFLLLITSSVCIVDEIRKKV 879 (884)
T ss_pred HHHHHHHccC-CccccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 467776 77899999999999999998766 6899999999999999999999999999999999999
Q ss_pred cccc
Q 048825 158 PVSG 161 (171)
Q Consensus 158 ~r~~ 161 (171)
+|++
T Consensus 880 ~~~~ 883 (884)
T TIGR01522 880 ERSR 883 (884)
T ss_pred Hhhc
Confidence 8653
No 3
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.5e-30 Score=224.19 Aligned_cols=160 Identities=23% Similarity=0.276 Sum_probs=143.4
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----------------
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFSV----------------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~----------------- 63 (171)
||++||.+||+||+|+|+|+||||+++++++++.++.+++..|.++++++++.|.+.+...+.
T Consensus 782 tDG~PA~aLG~ep~D~DiM~kpPR~~~~~iit~~l~~r~l~~g~~vg~~Tv~~f~~~~~~~~~~vt~~~~~~~~~c~~~~ 861 (972)
T KOG0202|consen 782 TDGPPATALGFEPVDPDIMKKPPRDSKDGIITGWLIFRYLAIGIIVGVATVGVFVWWMYGADGKVTYRQLAHYNSCCRDF 861 (972)
T ss_pred ccCCchhhcCCCCCChhHHhCCCCCCCCCeeeHHHHHHHHHhheeeeeeEhHhhhHHHhcCCCCcChhhhcchhhhcccc
Confidence 799999999999999999999999999999999999999999999999999998776542111
Q ss_pred --------cccchhhHHHHHHHHHHHHHHHHhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHH--HHHhhhhhccccC
Q 048825 64 --------NESVKDTMIFNTFVFCQIFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIM--VEFLKKFADTERL 132 (171)
Q Consensus 64 --------~~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~--vp~~~~~f~~~~l 132 (171)
...++.||+|.++|+..++|+++|||.+ ++.|. ++++|+|+++++.+++++|+.+ +|+++.+|+++||
T Consensus 862 ~~~~c~~F~~~~~~tMa~tv~V~~emfNaL~~~se~-~slf~~~~~~N~~l~~ai~~S~~~~f~ilYvp~l~~iFq~~~l 940 (972)
T KOG0202|consen 862 YGSRCAVFEDMCPLTMALTVLVFIEMFNALNCLSEN-KSLFTMPPWSNRWLLWAIALSFVLHFLVLYVPPLQRIFQTEPL 940 (972)
T ss_pred cccchhhhcccccceEEEeehhHHHHHHHhhcccCC-cceEEecccccHHHHHHHHHHHHhhheEEEechhhhhheecCC
Confidence 1224569999999999999999999985 56665 8999999999999999999876 4789999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 048825 133 NWGQWAACIGIAAMSWPIGFLFKCIPVSG 161 (171)
Q Consensus 133 ~~~~w~~~~~~~~~~~~~~e~~K~~~r~~ 161 (171)
++.||+.++.+++.+++++|++|++.|+.
T Consensus 941 ~~~ew~~vl~~s~~V~i~dEilK~~~R~~ 969 (972)
T KOG0202|consen 941 SLAEWLLVLAISSPVIIVDEILKFIARNY 969 (972)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999854
No 4
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.96 E-value=2.1e-28 Score=223.61 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=138.0
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--C--------------Cc
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIF--S--------------VN 64 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~--g--------------~~ 64 (171)
||++|+++|+.||||+|+|+||||++++++++++++.+++.+|++++++++..|++.++.. | .+
T Consensus 855 ~d~~palaL~~e~~~~~~m~~~Pr~~~~~l~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1053)
T TIGR01523 855 TSCFPAMGLGLEKAAPDLMDRLPHDNEVGIFQKELIIDMFAYGFFLGGSCLASFTGILYGFGSGNLGHDCDAHYHAGCND 934 (1053)
T ss_pred HHHHHHHhhccCCCChhHHhcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccccccccc
Confidence 5899999999999999999999999999999999999999999999999998886432110 1 02
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCcccccc----------------ccccCHHHHHHHHHHHHHHHHHH--HHhhh-
Q 048825 65 ESVKDTMIFNTFVFCQIFNEFNARKLEKKNIFK----------------GIHKNKLFLAIIGITIVLQLIMV--EFLKK- 125 (171)
Q Consensus 65 ~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~----------------~~~~N~~l~~~~~~~~~l~~~~v--p~~~~- 125 (171)
..+|||++|.+++++|++|+++||+.+ .++|+ +.++|++++++++++++++++++ |+++.
T Consensus 935 ~~~a~t~~f~~l~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~ 1013 (1053)
T TIGR01523 935 VFKARSAAFATMTFCALILAVEVKDFD-NSFFNLHGIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVINDD 1013 (1053)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCc-hhhhhcCccccccccccccccCCccCHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 346899999999999999999999974 55553 25799999999999999998764 78986
Q ss_pred hhccccCChhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 048825 126 FADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGT 162 (171)
Q Consensus 126 ~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~ 162 (171)
+|+++|+++ +|++++++++.++++.|++|+++||..
T Consensus 1014 ~f~~~~l~~-~w~~~~~~~~~~~~~~e~~K~~~r~~~ 1049 (1053)
T TIGR01523 1014 VFKHKPIGA-EWGLAAAATIAFFFGAEIWKCGKRRLF 1049 (1053)
T ss_pred hhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999996 999999999999999999999987653
No 5
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.96 E-value=5.7e-28 Score=218.95 Aligned_cols=158 Identities=21% Similarity=0.321 Sum_probs=139.5
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----------------
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFSV----------------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~----------------- 63 (171)
+|++|+++|+.||||+++|+||||++++++++++++.+++.+|++++++++..|.+.....|.
T Consensus 734 ~d~lp~~~l~~~~~~~~~m~~pP~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (917)
T TIGR01116 734 TDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRYLVVGVYVGLATVGGFVWWYLLTHFTGCDEDSFTTCPDFEDP 813 (917)
T ss_pred HHHHHHHHHhcCCcchhHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccc
Confidence 589999999999999999999999999999999999999999999999888777653221111
Q ss_pred ------cccchhhHHHHHHHHHHHHHHHHhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHH--HHHhhhhhccccCCh
Q 048825 64 ------NESVKDTMIFNTFVFCQIFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIM--VEFLKKFADTERLNW 134 (171)
Q Consensus 64 ------~~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~--vp~~~~~f~~~~l~~ 134 (171)
+..++||++|++++++|++|.++||+.+ .++|+ +.++|+++++++++++++|+++ +|+++++|+++|+++
T Consensus 814 ~~~~~~~~~~~~t~~f~~~v~~q~~~~~~~r~~~-~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~v~~~~~~f~~~~l~~ 892 (917)
T TIGR01116 814 DCYVFEGKQPARTISLSVLVVIEMFNALNALSED-QSLLRMPPWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSL 892 (917)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHcCCc-ccccccCCccCHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCH
Confidence 1346899999999999999999999964 67775 7789999999999999999887 578999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 048825 135 GQWAACIGIAAMSWPIGFLFKCIPV 159 (171)
Q Consensus 135 ~~w~~~~~~~~~~~~~~e~~K~~~r 159 (171)
.+|+++++++++.+++.|++|+++|
T Consensus 893 ~~w~~~~~~~~~~~~~~e~~k~~~~ 917 (917)
T TIGR01116 893 TDWLMVLKLSLPVILVDEVLKFFSR 917 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998864
No 6
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.95 E-value=4.3e-27 Score=213.80 Aligned_cols=158 Identities=46% Similarity=0.824 Sum_probs=141.3
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CC------cccchhhH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIF---SV------NESVKDTM 71 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~---g~------~~~~a~T~ 71 (171)
+|++|+++|+.|||++++|+||||+++++++++.++.+++.+|++++++++..|++...+. +. ...+++|+
T Consensus 773 ~d~~~al~l~~e~~~~~lm~~~P~~~~~~li~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 852 (941)
T TIGR01517 773 MDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILGQAGYQLVVTFILLFAGGSIFDVSGPDEITSHQQGELNTI 852 (941)
T ss_pred HHHhhHHHHccCCccHHHHhCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCcccccccccchhhHH
Confidence 5899999999999999999999999999999999999999999999998888876543211 11 23578999
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHhhhhhccccCChhHHHHHHHHHHHHHHHH
Q 048825 72 IFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIG 151 (171)
Q Consensus 72 ~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~vp~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~ 151 (171)
+|++++++|++|.+++|+.+..++|++.++|++++.++++++++|++++|+++.+|++.|+++.+|+++++++++.+++.
T Consensus 853 ~f~~~v~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~ 932 (941)
T TIGR01517 853 VFNTFVLLQLFNEINARKLYERNVFEGLFKNRIFVTIMGFTFGFQVIIVEFGGSFFSTVSLSIEQWIGCVLLGMLSLIFG 932 (941)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975446777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 048825 152 FLFKCIP 158 (171)
Q Consensus 152 e~~K~~~ 158 (171)
|+.|.+.
T Consensus 933 ~~~~~~~ 939 (941)
T TIGR01517 933 VLLRLIP 939 (941)
T ss_pred HHHHhcc
Confidence 9999985
No 7
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.3e-27 Score=207.47 Aligned_cols=165 Identities=57% Similarity=0.974 Sum_probs=149.2
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC------cccchhhHHHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFSV------NESVKDTMIFN 74 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~------~~~~a~T~~F~ 74 (171)
||.+.|+||+.|||.+++|+|||..+++|++++-||++++.|++++..+.+...|.+...++. .+.+.-|+.|+
T Consensus 843 MDTLgALALATepPt~~Lm~RkP~GR~~~LIt~tMwknil~qa~YQl~vl~iL~F~G~~if~~~~~~~~~~~~~nTiIFN 922 (1034)
T KOG0204|consen 843 MDTLGALALATEPPTDELMKRKPVGRTKPLITRTMWKNILGQAVYQLIVLFILNFAGKSIFGLNGPLHSPPSVHNTIIFN 922 (1034)
T ss_pred HHHHHHHHhccCCCChHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCCCCchhhheeeehh
Confidence 699999999999999999999999999999999999999999999999998888776543321 13345699999
Q ss_pred HHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHhhhhhccccCChhHHHHHHHHHHHHHHHHHHH
Q 048825 75 TFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLF 154 (171)
Q Consensus 75 ~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~vp~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~ 154 (171)
++|+||+||-+|.|+.++.++|+++++|+.+...+..++++|++++.+++.+|+++||++.+|++|+.++++.+++..+.
T Consensus 923 tFV~~qvFNEinaRki~~~NvFkgi~~N~~F~~ii~~T~v~QviIveF~g~~~st~~L~~~qWl~ci~~g~~sl~~g~~i 1002 (1034)
T KOG0204|consen 923 TFVFCQVFNEINARKIDERNVFKGIFRNRLFCVIITITVVSQVIIVEFGGAFFSTTPLSLTQWLWCIFIGVLSLPWGQLL 1002 (1034)
T ss_pred HHHHHHHHHHHhhcchhHHhHHHHHhcCceEEEEeeeeeehhhhhhhhcCcceeeecccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988789999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcccccccc
Q 048825 155 KCIPVSGTQLL 165 (171)
Q Consensus 155 K~~~r~~~~~~ 165 (171)
|.+..+..++.
T Consensus 1003 k~iP~~~~~~~ 1013 (1034)
T KOG0204|consen 1003 KCIPVSSLPKL 1013 (1034)
T ss_pred eeccccccccc
Confidence 99886655544
No 8
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.93 E-value=1.2e-24 Score=198.80 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=133.2
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCC-CCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHhhhccC--------C-------
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGR-SEPLITKLMWRN-LIPQAIYQVTILLTLQFKGRSIFS--------V------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~-~e~il~~~~~~~-i~~~g~~~~~~~~~~~~~~~~~~g--------~------- 63 (171)
+|++|+++|+.||+|+++|+||||++ +++++++.++.. ++..|+++++..+..|++.....| .
T Consensus 788 ~d~lp~~al~~e~~~~~~m~~~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 867 (997)
T TIGR01106 788 TDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPLHLVGLRVQWDDR 867 (997)
T ss_pred HHHHHHHHHhcCCCCcccccCCCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccccccc
Confidence 68999999999999999999999985 789999988754 566788888888887765331111 0
Q ss_pred -------c------c-------cchhhHHHHHHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHH--H
Q 048825 64 -------N------E-------SVKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV--E 121 (171)
Q Consensus 64 -------~------~-------~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v--p 121 (171)
. . .++||++|++++++|++|.++||+. +.++|++.++|++++.+++++++++++++ |
T Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~v~~q~~~~~~~R~~-~~~~f~~~~~n~~l~~~~~~~~~l~~~~~~~p 946 (997)
T TIGR01106 868 WINDLEDSYGQEWTYEQRKYVEFTCHTAFFVSIVVVQWADLIICKTR-RNSVFQQGMKNKILIFGLFEETALAAFLSYCP 946 (997)
T ss_pred cccccccccccccchhcccchhhhhhHHHHHHHHHHHHHHHHHhccC-cccccccCCcCHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0 1579999999999999999999996 46777644899999999999999887654 6
Q ss_pred HhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 048825 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 122 ~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~ 160 (171)
+++++|+++|+++.+|+++++++++.+++.|++|+++|+
T Consensus 947 ~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~~r~ 985 (997)
T TIGR01106 947 GMGVALRMYPLKPTWWFCAFPYSLLIFVYDEIRKLIIRR 985 (997)
T ss_pred hhHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999875
No 9
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.6e-25 Score=192.26 Aligned_cols=165 Identities=16% Similarity=0.156 Sum_probs=143.4
Q ss_pred CchhhhhhhccCCCCccCcCCCCCC-CCCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHhhhccCC---------------
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVG-RSEPLITKLMW-RNLIPQAIYQVTILLTLQFKGRSIFSV--------------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~-~~e~il~~~~~-~~i~~~g~~~~~~~~~~~~~~~~~~g~--------------- 63 (171)
||..||+.|++|+||.|+|+|+||+ .+++++|++++ ..++..|.+++++++..||..+..+|.
T Consensus 810 TDmvPAiSLAYE~aEsDIM~r~PR~p~~D~LVN~rLi~~aY~qIG~iqa~agF~tYFvima~nGf~P~~L~~ir~~W~d~ 889 (1019)
T KOG0203|consen 810 TDIVPAISLAYEKAESDIMLRPPRNPKDDKLVNKRLISYSYLQIGMIQALAGFFTYFVIMAENGFLPRTLVGLREDWDDD 889 (1019)
T ss_pred cccchhhhHhccCchhhHHhcCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHhhHHhhhhh
Confidence 7999999999999999999999998 88999999986 468889999999999999987654332
Q ss_pred -------------c-------ccchhhHHHHHHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHH--HH
Q 048825 64 -------------N-------ESVKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIM--VE 121 (171)
Q Consensus 64 -------------~-------~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~--vp 121 (171)
+ +.+++|+.|.++|.+|+++.+.|++. +.|+|.+-++|+.++.+++..+++...+ +|
T Consensus 890 ~~~Dl~DsyGQeWtyeqRk~le~tc~taFfvsIvV~Q~adLii~KTR-RnSlfqqGmrN~vl~f~v~~e~~La~fl~y~p 968 (1019)
T KOG0203|consen 890 GVNDLTDSYGQEWTYEQRKYLEYTCYTAFFISIVVVQWADLIICKTR-RNSIFQQGMRNKVLIFAVIFETCLACFLCYCP 968 (1019)
T ss_pred hhhhhhhhccccccHHHHHHHHHhhhhheeeeehHHhHhhHHhhhcc-hhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCc
Confidence 0 34578999999999999999999995 5788874489999999999988887654 57
Q ss_pred HhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 048825 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGTQLLF 166 (171)
Q Consensus 122 ~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~~~~~ 166 (171)
++...|++.|+.+..|+..+++++..++++|++|++.|+...+-+
T Consensus 969 g~~~~l~~~pl~~~~wl~a~P~~ilIfvydE~Rk~~IR~~P~gw~ 1013 (1019)
T KOG0203|consen 969 GVLYALGMYPLKFQWWLVAFPFGILIFVYDEVRKLFIRRYPGGWL 1013 (1019)
T ss_pred cHHHHhccCCCCcEEEEecccceeeeeeHHHHHhHhhhhCCCchh
Confidence 899999999999999999999999999999999999986554433
No 10
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.87 E-value=4.5e-21 Score=173.70 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=116.2
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc--cchhhHHHHHHHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFSVNE--SVKDTMIFNTFVF 78 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~--~~a~T~~F~~lv~ 78 (171)
||. |+++|+.||+|+|+| ||||+++++++++.++. +...+.+++++++..+++... .+... ...+|+.|.++++
T Consensus 741 ~D~-~~lal~~d~~~~~~m-~~P~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~f~~l~~ 816 (903)
T PRK15122 741 YDI-SQLSLPWDKMDKEFL-RKPRKWDAKNIGRFMLW-IGPTSSIFDITTFALMWFVFA-ANSVEMQALFQSGWFIEGLL 816 (903)
T ss_pred HHH-HHHhhcCCCCCHhhc-CCCCCCChhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhc-cCcHhhhhhhHHHHHHHHHH
Confidence 585 999999999999999 99999999999997765 444444455555544333221 12111 1235889999999
Q ss_pred HHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHH--HH--hhhhhccccCChhHHHHHHHHHHHHHHHHHHH
Q 048825 79 CQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV--EF--LKKFADTERLNWGQWAACIGIAAMSWPIGFLF 154 (171)
Q Consensus 79 ~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v--p~--~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~ 154 (171)
+|++|++++|+.+ .+ +++|++.+.+++++++++++++ |+ ++.+|+++|+++.+|++++++++..+++.|+.
T Consensus 817 ~q~~~~~~~R~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~e~~ 891 (903)
T PRK15122 817 SQTLVVHMLRTQK-IP----FIQSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPWSYFPWLAATLLGYCLVAQGM 891 (903)
T ss_pred HHHHHHHhhCcCC-CC----cCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999963 33 3578888888888888887654 54 89999999999999999999999999999998
Q ss_pred Hhhccc
Q 048825 155 KCIPVS 160 (171)
Q Consensus 155 K~~~r~ 160 (171)
|.+-.|
T Consensus 892 k~~~~r 897 (903)
T PRK15122 892 KRFYIR 897 (903)
T ss_pred HHHHhh
Confidence 855433
No 11
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.78 E-value=3.1e-18 Score=155.27 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=107.9
Q ss_pred CchhhhhhhccCCCCccCcCCCCC-CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc----hhhHHHHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPV-GRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFSVNESV----KDTMIFNT 75 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr-~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~~~----a~T~~F~~ 75 (171)
|| +|+++|++||+|+++|+|||| ++++ +.+.++..|.+.++..+..|+......+....+ .+|..|++
T Consensus 741 ~D-~~~~al~~d~~~~~~m~~p~r~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 813 (902)
T PRK10517 741 YD-VSQVAIPFDNVDDEQIQKPQRWNPAD------LGRFMVFFGPISSIFDILTFCLMWWVFHANTPETQTLFQSGWFVV 813 (902)
T ss_pred HH-HhHHhhcCCCCChhhhcCCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhHhHHHHHHHHH
Confidence 58 689999999999999999998 3322 445566777776666666554432212311122 34456999
Q ss_pred HHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHH--HH--HhhhhhccccCC--hhHHHHHHHHHHHHHH
Q 048825 76 FVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIM--VE--FLKKFADTERLN--WGQWAACIGIAAMSWP 149 (171)
Q Consensus 76 lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~--vp--~~~~~f~~~~l~--~~~w~~~~~~~~~~~~ 149 (171)
++++|++++++||+.+ . ++++|++++.+++.+++++++. +| +++.+|++.|++ ..+|++++.++.. +
T Consensus 814 ~~~~q~~~~~~~R~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ 886 (902)
T PRK10517 814 GLLSQTLIVHMIRTRR-I----PFIQSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPLSYFPWLVAILAGYM--T 886 (902)
T ss_pred HHHHHHHHHHhhccCC-C----CcccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCChhHHHHHHHHHHHHH--H
Confidence 9999999999999963 2 3468999999999998888754 46 789999999999 6788887777666 5
Q ss_pred HHHHHHhhcccc
Q 048825 150 IGFLFKCIPVSG 161 (171)
Q Consensus 150 ~~e~~K~~~r~~ 161 (171)
+.|+.|.+..|.
T Consensus 887 ~~e~~K~~~~~~ 898 (902)
T PRK10517 887 LTQLVKGFYSRR 898 (902)
T ss_pred HHHHHHHHHHHh
Confidence 678888765433
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.77 E-value=5.7e-18 Score=153.21 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=105.8
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-C-c--ccchhhHHHHHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIFS-V-N--ESVKDTMIFNTF 76 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g-~-~--~~~a~T~~F~~l 76 (171)
|| +|+++|+.||+++++|++||| ++++. +...++..|.+.++..+..|+......+ . . ...-+|..|+++
T Consensus 706 ~d-~~~~al~~~~~~~~~m~~p~~-~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~~ 779 (867)
T TIGR01524 706 YD-FSQLTLPWDKMDREFLKKPHQ-WEQKG----MGRFMLCIGPVSSIFDIATFLLMWFVFSANTVEEQALFQSGWFVVG 779 (867)
T ss_pred HH-HHHHhhcCCCCChHhhCCCCC-CChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHH
Confidence 58 799999999999999987666 77753 3444556666665555554433211111 1 1 112378999999
Q ss_pred HHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHH--HH--hhhhhccccC--ChhHHHHHHHHHHHHHHH
Q 048825 77 VFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV--EF--LKKFADTERL--NWGQWAACIGIAAMSWPI 150 (171)
Q Consensus 77 v~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v--p~--~~~~f~~~~l--~~~~w~~~~~~~~~~~~~ 150 (171)
+++|++|++++|+.+ .+ +++|++++.+++++++++++++ |+ ++.+|++.|+ ++.+|++++.++.. ++
T Consensus 780 ~~~~~~~~~~~R~~~-~~----~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~~--~~ 852 (867)
T TIGR01524 780 LLSQTLVVHMIRTEK-IP----FIQSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPLSYFPWLIAILVGYM--AT 852 (867)
T ss_pred HHHHHHHHHhhCcCC-CC----cCcchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCccHHHHHHHHHHHHH--HH
Confidence 999999999999963 23 4579999999999999988765 54 5999999988 55678887776665 66
Q ss_pred HHHHHhhccc
Q 048825 151 GFLFKCIPVS 160 (171)
Q Consensus 151 ~e~~K~~~r~ 160 (171)
.|+.|.+..|
T Consensus 853 ~e~~k~~~~~ 862 (867)
T TIGR01524 853 MQLVKTFYIR 862 (867)
T ss_pred HHHHHHHHHH
Confidence 8888876443
No 13
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.1e-17 Score=146.38 Aligned_cols=155 Identities=23% Similarity=0.369 Sum_probs=126.3
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCC-------cccchhhHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRN-LIPQAIYQVTILLTLQFKGRSIFSV-------NESVKDTMI 72 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~-i~~~g~~~~~~~~~~~~~~~~~~g~-------~~~~a~T~~ 72 (171)
+|++|+++|+.||++.|+|++|||++++++++++.+.+ ++..|...+++.+..|.+....... ....++|++
T Consensus 744 ~d~~pa~~L~~~~~~~~~m~~~~~~p~~~i~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 823 (917)
T COG0474 744 TDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTA 823 (917)
T ss_pred HhhhhhheeecCCCcccccccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 58999999999999999999999999999999998876 7777888888887777665432111 145589999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHHH--HHhh-hhhccccCChhHHHHHHHHHHH--
Q 048825 73 FNTFVFCQIFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIMV--EFLK-KFADTERLNWGQWAACIGIAAM-- 146 (171)
Q Consensus 73 F~~lv~~q~~~~~~~Rs~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~v--p~~~-~~f~~~~l~~~~w~~~~~~~~~-- 146 (171)
|..++++|.++.+.+|+.+ .++++ ++++|+.++++++++.+++++.+ |..+ ..|++.|++..+|.++...+..
T Consensus 824 f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 902 (917)
T COG0474 824 FTVLVLIQLLLTLAVRSRG-RPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLL 902 (917)
T ss_pred HHHHHHHHHHHHHHHhccc-cchhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHhhhccCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999963 56665 56799999999999999988765 5666 7999999999999998887744
Q ss_pred HHHHHHHHHh
Q 048825 147 SWPIGFLFKC 156 (171)
Q Consensus 147 ~~~~~e~~K~ 156 (171)
.+...|..|.
T Consensus 903 ~~~~~~~~~~ 912 (917)
T COG0474 903 YIVVSELYKL 912 (917)
T ss_pred HHHHHHHHHH
Confidence 4444555554
No 14
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.36 E-value=5.8e-12 Score=116.48 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=104.2
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--c----C--C----cccch
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSI--F----S--V----NESVK 68 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~--~----g--~----~~~~a 68 (171)
+|.+++++++.|||++++|++||+ ++++++.++..++.++++..++.+..|++.... . . . .....
T Consensus 901 ~~~~~~l~l~~~~p~~~l~~~~P~---~~l~~~~~~~si~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1054)
T TIGR01657 901 LIFPVALLMSRNKPLKKLSKERPP---SNLFSVYILTSVLIQFVLHILSQVYLVFELHAQPWYKPENPVDLEKENFPNLL 977 (1054)
T ss_pred HHHHHHHHHHcCCchhhcCCCCCC---ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCCcccccCccHH
Confidence 478999999999999999999984 799999999999999999999999888765421 0 0 0 01233
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHH-H---HHHhhhhhccccCChhHHHH
Q 048825 69 DTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLI-M---VEFLKKFADTERLNWGQWAA 139 (171)
Q Consensus 69 ~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~-~---vp~~~~~f~~~~l~~~~w~~ 139 (171)
.|++| .++..|.++.+.+++. .+++.+++++|+++++++++++++++. + +|.++++|++.|++. +|-.
T Consensus 978 ~T~~f-~~~~~~~~~~~~~~~~-g~pf~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 1049 (1054)
T TIGR01657 978 NTVLF-FVSSFQYLITAIVNSK-GPPFREPIYKNKPFVYLLITGLGLLLVLLLDPHPLLGKILQIVPLPQ-EFRS 1049 (1054)
T ss_pred HHHHH-HHHHHHHHHheEEEcC-CcchhhhHHHhHHHHHHHHHHHHHHHHhhhCCCHHHHhhheeeeCCH-HHHH
Confidence 69999 5666677777888885 456666889999999999888777663 2 378999999999985 4543
No 15
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.93 E-value=1.1e-08 Score=92.17 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=80.7
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh------ccC--CcccchhhHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRS------IFS--VNESVKDTMI 72 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~------~~g--~~~~~a~T~~ 72 (171)
+|. +++++++|++++ ||+|++..++ +++..++..|.++++.++..|++... ..+ .+..++||++
T Consensus 637 ~d~-~~~~l~~~~~~~------~~~p~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 708 (755)
T TIGR01647 637 NDG-TIMTIAYDNVKP------SKLPQRWNLR-EVFTMSTVLGIYLVISTFLLLAIALDTSFFIDKFGLQLLHGNLQSLI 708 (755)
T ss_pred HhH-hHhhccCCCCCC------CCCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHhhhHHHH
Confidence 465 699999999874 4555555554 67777889999999998888866542 011 1245789999
Q ss_pred HHHHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHH
Q 048825 73 FNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIM 119 (171)
Q Consensus 73 F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~ 119 (171)
|.+++++|.++.+++|+.+ ..|. .++|+++..+.+...++..++
T Consensus 709 f~~~~~~~~~~~~~~r~~~--~~~~-~~p~~~l~~~~~~~~~~~~~~ 752 (755)
T TIGR01647 709 YLQVSISGQATIFVTRTHG--FFWS-ERPGKLLFIAFVIAQIIATFI 752 (755)
T ss_pred HHHHHHHHHHHHheeccCC--CCcc-cCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999953 3343 258999988888877776654
No 16
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=98.02 E-value=8.5e-05 Score=69.53 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=44.1
Q ss_pred Cchhhhhhhcc--CCCCccCcCCCCC----CCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 048825 1 MDTLGALALAT--EQPTNDLMSKPPV----GRSEPLITKLMWRNLIPQAIYQVTILLTL 53 (171)
Q Consensus 1 tD~~palaL~~--ep~e~~iM~rpPr----~~~e~il~~~~~~~i~~~g~~~~~~~~~~ 53 (171)
+|.+|++++|. +++++++|.|+|+ .++++.++.+.+...+..|++++++.++.
T Consensus 875 ~t~lp~~~l~~~d~~~~~~~l~~~P~ly~~~~~~~~~~~~~f~~~~~~~~~~~~ii~~~ 933 (1057)
T TIGR01652 875 FTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIYQSLVIFFF 933 (1057)
T ss_pred HHhHHHHHHHHhcccCCHHHHHhChHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999986 5778999999998 67889999998877778898888877654
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=88.17 E-value=9.8 Score=28.99 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=8.4
Q ss_pred ccCcCCCCCCCCCCC
Q 048825 16 NDLMSKPPVGRSEPL 30 (171)
Q Consensus 16 ~~iM~rpPr~~~e~i 30 (171)
+++.+.+|++++.+.
T Consensus 60 ~eli~~~~k~~~~~~ 74 (206)
T PF06570_consen 60 DELIKPLPKPKKKNK 74 (206)
T ss_pred HHHhccccCCccccc
Confidence 445566666655544
No 18
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=87.29 E-value=5.4 Score=36.37 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=54.9
Q ss_pred cchhhHHHHHHHHHHHHHHH-HhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHhhhhhccccCChhHHHH-HHHH
Q 048825 66 SVKDTMIFNTFVFCQIFNEF-NARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAA-CIGI 143 (171)
Q Consensus 66 ~~a~T~~F~~lv~~q~~~~~-~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~vp~~~~~f~~~~l~~~~w~~-~~~~ 143 (171)
.+--++.|+++++.++..+- ..++ .++.+..+-++++++-+..++.++++|...-+....+.+ +.+.
T Consensus 955 ~~ivaisFtaLi~tELiMVaLtv~t-----------w~~~m~vae~lsL~~Yivsl~~l~~yfd~~f~~~~~Fl~k~t~I 1023 (1051)
T KOG0210|consen 955 IHIVAISFTALILTELIMVALTVRT-----------WHWLMVVAELLSLALYIVSLAFLHEYFDRYFILTYVFLWKVTVI 1023 (1051)
T ss_pred eEeeeeeeHHHHHHHHHHHhhhhhh-----------hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34567899999998876442 2222 244455555555555555567888888766655444333 2334
Q ss_pred HHHHHHHHHHHHhhcccccccccc
Q 048825 144 AAMSWPIGFLFKCIPVSGTQLLFK 167 (171)
Q Consensus 144 ~~~~~~~~e~~K~~~r~~~~~~~~ 167 (171)
.++.++.....|.++|+-++-.+.
T Consensus 1024 ~~vS~Lpl~~~K~lrrk~sPpSYa 1047 (1051)
T KOG0210|consen 1024 TLVSCLPLYFIKALRRKLSPPSYA 1047 (1051)
T ss_pred HHHHHHHHHHHHHHHhhcCCcchh
Confidence 445555667788888876665543
No 19
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=83.15 E-value=41 Score=31.59 Aligned_cols=147 Identities=11% Similarity=0.093 Sum_probs=79.5
Q ss_pred cCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CC------cccchhhHHHHHHHH
Q 048825 11 TEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSIF------SV------NESVKDTMIFNTFVF 78 (171)
Q Consensus 11 ~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~------g~------~~~~a~T~~F~~lv~ 78 (171)
..+|-+.+=++.| -.+|+|...+..++.|=.+=... ..|....... +. +++.-.|..|..-..
T Consensus 988 rskPLetLSkeRP---~~nIFN~Y~i~svl~QFaVH~~t--LvYi~~~a~~~~p~~~~vdl~~~F~PsllNt~vyiisl~ 1062 (1160)
T KOG0209|consen 988 RSKPLETLSKERP---LPNIFNVYIILSVLLQFAVHIAT--LVYITGEAYKLEPPEEKVDLEEKFSPSLLNTTVYIISLA 1062 (1160)
T ss_pred cCCchhhHhhcCC---CCCcchHHHHHHHHHHHHHHHHH--hhhhHHHHHhcCCcccccChhcccChhhhhhHHHHHHHH
Confidence 3444455545544 35799988777666553332221 1222221110 01 122234555544334
Q ss_pred HHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHH----HHhhhhhccccCChhH---HHHHHHHH-HHHHHH
Q 048825 79 CQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV----EFLKKFADTERLNWGQ---WAACIGIA-AMSWPI 150 (171)
Q Consensus 79 ~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v----p~~~~~f~~~~l~~~~---w~~~~~~~-~~~~~~ 150 (171)
.|+. .|..--. ..++.+.++.||.+.++++++..+.+... |-++.-|+.++++-.- ...++.+- ++.+.+
T Consensus 1063 ~Qvs-TFAVNY~-G~PF~Esl~eNK~l~y~ll~~~~~~~~l~tg~~peLn~~~~lV~mp~~fk~~ll~~l~lD~v~c~~~ 1140 (1160)
T KOG0209|consen 1063 QQVS-TFAVNYQ-GRPFRESLRENKGLLYGLLGSAGVIIALATGSSPELNEKFELVDMPQDFKIKLLAVLVLDFVLCYLV 1140 (1160)
T ss_pred HHHH-Hhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHHHhccChhHHhheeeecccHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 2322221 34666688899999999988877766543 6789999999988421 22233333 344566
Q ss_pred HHHHHhhccccccc
Q 048825 151 GFLFKCIPVSGTQL 164 (171)
Q Consensus 151 ~e~~K~~~r~~~~~ 164 (171)
+++.|++-...+++
T Consensus 1141 er~~~f~f~~~k~k 1154 (1160)
T KOG0209|consen 1141 ERVLKFFFGDHKPK 1154 (1160)
T ss_pred HHHHHHHccCCCcc
Confidence 67777765544443
No 20
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=68.10 E-value=16 Score=34.51 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=70.0
Q ss_pred hhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--c-----CCc---ccchhhHHHH
Q 048825 5 GALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSI--F-----SVN---ESVKDTMIFN 74 (171)
Q Consensus 5 palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~--~-----g~~---~~~a~T~~F~ 74 (171)
-|+.++.-+|...+-..| |+..+++++.+...+.|-+++.+.-+..++..... . +.. ...--|..|.
T Consensus 956 ia~~m~~~~a~~~L~~~r---P~~~L~s~~~~~~l~~q~vli~l~q~i~~l~~~~qpw~~pp~~~~~~nt~s~~~T~lF~ 1032 (1140)
T KOG0208|consen 956 IAVMMSRFDASDKLFPKR---PPTNLLSKKILVPLLLQIVLICLVQWILTLIVEPQPWYEPPNPQVDDNTQSSDNTSLFF 1032 (1140)
T ss_pred HHHHHccCcHHHHhcCCC---CCccccccchhhhhHHHHHHHHHHHHhhheeeccccceecCCCCcCcccccceeeEeee
Confidence 456666666666555443 35689999998888888888888777776654310 0 000 1112355565
Q ss_pred HHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHH--HH---HhhhhhccccCChh
Q 048825 75 TFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIM--VE---FLKKFADTERLNWG 135 (171)
Q Consensus 75 ~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~--vp---~~~~~f~~~~l~~~ 135 (171)
.-.+--+++++.... ..++.+..++|+-+...+....+..+.+ +. .....++..+.+-.
T Consensus 1033 vS~fqYi~~a~v~S~--g~pfr~pl~~n~~f~~~i~~i~~~~i~l~~~~~~~~~~~l~~~t~~~~~ 1096 (1140)
T KOG0208|consen 1033 VSSFQYIFIALVLSK--GSPFRRPLWKNVLFKVFITVIILSTIYLLFVNYLFIEWKLLQLTYIPTT 1096 (1140)
T ss_pred hhHHHHHHhheeecc--CCcccCchhcCceeeeehhhHHhhhhhhhhccccchhhhhhceeccCcc
Confidence 555555666665443 2344446677775544333333333222 21 12356777777663
No 21
>PLN03190 aminophospholipid translocase; Provisional
Probab=67.95 E-value=1.3e+02 Score=29.52 Aligned_cols=28 Identities=4% Similarity=0.201 Sum_probs=19.2
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 048825 26 RSEPLITKLMWRNLIPQAIYQVTILLTL 53 (171)
Q Consensus 26 ~~e~il~~~~~~~i~~~g~~~~~~~~~~ 53 (171)
++...++.+.+...++.|++.+++.++.
T Consensus 1009 ~~~~~~n~~~F~~w~~~~i~qs~iiff~ 1036 (1178)
T PLN03190 1009 QRQEAYNSKLFWLTMIDTLWQSAVVFFV 1036 (1178)
T ss_pred ccCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788887766667777777766643
No 22
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=66.07 E-value=26 Score=23.85 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=27.8
Q ss_pred CCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 048825 12 EQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQF 55 (171)
Q Consensus 12 ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~ 55 (171)
|+|+..++.++|..++ +--++..|..+.+.|+..+++.+.+++
T Consensus 36 ~~p~g~l~~~~p~~~G-~~~d~e~we~~~f~~~~~~~v~~~~~~ 78 (105)
T PF10183_consen 36 DPPNGWLFGKNPPSPG-EKRDWEGWELPFFFGFSGSLVFGGVFL 78 (105)
T ss_pred CCCCccccCCCCCcCC-CcchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3566678999887766 445666677676666666555554443
No 23
>PRK05470 fumarate reductase subunit D; Provisional
Probab=49.71 E-value=87 Score=21.87 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=11.3
Q ss_pred cCCCCCCCCCCCC
Q 048825 19 MSKPPVGRSEPLI 31 (171)
Q Consensus 19 M~rpPr~~~e~il 31 (171)
|++.|++++||++
T Consensus 1 ~~~~pkRS~EPi~ 13 (118)
T PRK05470 1 INQNPKRSDEPVF 13 (118)
T ss_pred CCCCCCCCCCCCe
Confidence 6788999999987
No 24
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=40.15 E-value=91 Score=25.02 Aligned_cols=23 Identities=4% Similarity=-0.253 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 048825 137 WAACIGIAAMSWPIGFLFKCIPV 159 (171)
Q Consensus 137 w~~~~~~~~~~~~~~e~~K~~~r 159 (171)
|++.+.+++..++..-..-+++|
T Consensus 292 ~gy~~~l~~m~~i~~~~~~~fkr 314 (318)
T TIGR00383 292 YGYPAVLIVMAVIALGPLIYFRR 314 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333444554
No 25
>PF11804 DUF3325: Protein of unknown function (DUF3325); InterPro: IPR021762 This family of short proteins are functionally uncharacterised. This family is restricted to Alpha-, Beta- and Gamma-proteobacteria.
Probab=38.75 E-value=12 Score=25.64 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.6
Q ss_pred hhhhhhhccCCCCccCcCCCCCCC
Q 048825 3 TLGALALATEQPTNDLMSKPPVGR 26 (171)
Q Consensus 3 ~~palaL~~ep~e~~iM~rpPr~~ 26 (171)
++.++++++|+-.+|+..|+|.++
T Consensus 11 gf~~LALam~rH~~~v~~~~~~~~ 34 (106)
T PF11804_consen 11 GFAALALAMDRHHRQVFGRPLSPA 34 (106)
T ss_pred HHHHHHhcCcHHHHHHcCCCCCHH
Confidence 467899999999999999988653
No 26
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=36.42 E-value=3.2e+02 Score=24.62 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC---cccchhhHHHHHH--HHHHHHHHHHhhcCCcccccc-ccccCH
Q 048825 34 LMWRNLIPQAIYQVTILLTLQFKGRSIFSV---NESVKDTMIFNTF--VFCQIFNEFNARKLEKKNIFK-GIHKNK 103 (171)
Q Consensus 34 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~---~~~~a~T~~F~~l--v~~q~~~~~~~Rs~~~~~~~~-~~~~N~ 103 (171)
..+.++=+.|.++....+..|..++.+.|. +...++.++-..+ ++.-.|-.+......+++++. .+++|+
T Consensus 234 ~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~ 309 (599)
T PF06609_consen 234 EQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR 309 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc
Confidence 345555567888888888888777765443 1234555543333 222233333322211345554 566663
No 27
>COG4280 Predicted membrane protein [Function unknown]
Probab=34.35 E-value=1.7e+02 Score=22.61 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 048825 102 NKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPV 159 (171)
Q Consensus 102 N~~l~~~~~~~~~l~~~~vp~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r 159 (171)
++--+++...++++....+-.+++.+...|++..+.. .+.-+..+-+.-++|.++|
T Consensus 33 wr~al~ga~lglalvl~l~lvlGk~L~lvPln~lqiv--~gvLLllFG~rw~Rsavrr 88 (236)
T COG4280 33 WRLALIGAVLGLALVLILTLVLGKLLYLVPLNYLQIV--SGVLLLLFGYRWIRSAVRR 88 (236)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccceeeeechHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555445568888888999876633 2333333444455655554
No 28
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=33.00 E-value=2.4e+02 Score=24.08 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhcCCccc--cccccccCHHHHHHHHHHHHHHH----HHHH-HhhhhhccccCChhHHHHHHHHHHH----
Q 048825 78 FCQIFNEFNARKLEKKN--IFKGIHKNKLFLAIIGITIVLQL----IMVE-FLKKFADTERLNWGQWAACIGIAAM---- 146 (171)
Q Consensus 78 ~~q~~~~~~~Rs~~~~~--~~~~~~~N~~l~~~~~~~~~l~~----~~vp-~~~~~f~~~~l~~~~w~~~~~~~~~---- 146 (171)
.-|...++-.++..+.+ ....-++|....++.+-++.+-. +-+| +.+.+++-+|++...|.+++..+.+
T Consensus 247 ~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eG 326 (503)
T KOG2802|consen 247 CNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEG 326 (503)
T ss_pred HHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcc
Confidence 46777777777543322 22222466666555544443321 1234 6789999999999999999776543
Q ss_pred ---HHHHHHHHHh
Q 048825 147 ---SWPIGFLFKC 156 (171)
Q Consensus 147 ---~~~~~e~~K~ 156 (171)
...+.|+.|-
T Consensus 327 asllvAi~evkr~ 339 (503)
T KOG2802|consen 327 ASLLVAINEVKRN 339 (503)
T ss_pred hHHHHHHHHHHHH
Confidence 3455666554
No 29
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=26.20 E-value=1.8e+02 Score=23.88 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=4.6
Q ss_pred CCCCccCcCC
Q 048825 12 EQPTNDLMSK 21 (171)
Q Consensus 12 ep~e~~iM~r 21 (171)
|.-+.++++.
T Consensus 156 d~ls~~if~~ 165 (316)
T PRK11085 156 EKLSRVIMEG 165 (316)
T ss_pred HHHHHHhccC
Confidence 3344455543
No 30
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.84 E-value=2.3e+02 Score=20.31 Aligned_cols=16 Identities=0% Similarity=-0.338 Sum_probs=8.3
Q ss_pred HHHHHHHHhhcccccc
Q 048825 148 WPIGFLFKCIPVSGTQ 163 (171)
Q Consensus 148 ~~~~e~~K~~~r~~~~ 163 (171)
....-.+|+.+|++++
T Consensus 60 ~~~~l~rr~~~~~~~~ 75 (140)
T COG1585 60 LLALLGRRFVRRRLKP 75 (140)
T ss_pred HHHHHHHHHHhhccCC
Confidence 3344456666664433
No 31
>PF02313 Fumarate_red_D: Fumarate reductase subunit D; InterPro: IPR003418 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 13kDa hydrophobic subunit D. This component may be required to anchor the catalytic components of the fumarate reductase complex to the cytoplasmic membrane.; GO: 0006106 fumarate metabolic process, 0016020 membrane; PDB: 3P4R_P 1KF6_P 3P4Q_P 3P4S_D 3CIR_P 2B76_D 1L0V_P 3P4P_D 1KFY_P.
Probab=24.69 E-value=11 Score=26.40 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=6.0
Q ss_pred cCCCCCCCCCCCC
Q 048825 19 MSKPPVGRSEPLI 31 (171)
Q Consensus 19 M~rpPr~~~e~il 31 (171)
|++.|++++||++
T Consensus 1 ~~~~~kRS~EPi~ 13 (118)
T PF02313_consen 1 MNQNPKRSDEPIF 13 (118)
T ss_dssp --SS--B-SHHHH
T ss_pred CCCCCcccCCCce
Confidence 7888988888643
No 32
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.64 E-value=25 Score=28.65 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 048825 20 SKPPVGR 26 (171)
Q Consensus 20 ~rpPr~~ 26 (171)
+||||-+
T Consensus 13 ~r~pr~p 19 (381)
T PF05297_consen 13 RRPPRCP 19 (381)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 5777754
No 33
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=24.21 E-value=1.1e+02 Score=20.51 Aligned_cols=8 Identities=13% Similarity=-0.471 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 048825 103 KLFLAIIG 110 (171)
Q Consensus 103 ~~l~~~~~ 110 (171)
+|-.++++
T Consensus 48 ~WRN~GIl 55 (103)
T PF06422_consen 48 RWRNFGIL 55 (103)
T ss_pred hhhhHHHH
Confidence 33333333
No 34
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=23.92 E-value=1e+02 Score=21.93 Aligned_cols=12 Identities=25% Similarity=0.191 Sum_probs=6.4
Q ss_pred cCChhHHHHHHH
Q 048825 131 RLNWGQWAACIG 142 (171)
Q Consensus 131 ~l~~~~w~~~~~ 142 (171)
|+++..|++.+.
T Consensus 18 P~a~GWwll~~l 29 (146)
T PF14316_consen 18 PLAPGWWLLLAL 29 (146)
T ss_pred CccHHHHHHHHH
Confidence 555555555443
No 35
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.70 E-value=3.6e+02 Score=21.09 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhc
Q 048825 78 FCQIFNEFNARK 89 (171)
Q Consensus 78 ~~q~~~~~~~Rs 89 (171)
+.|+..+|..-.
T Consensus 10 ~~Qi~q~y~~tr 21 (224)
T PF13829_consen 10 RKQIWQAYKMTR 21 (224)
T ss_pred HHHHHHHHHHHH
Confidence 456766666544
No 36
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=23.00 E-value=1.8e+02 Score=18.97 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=19.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 048825 130 ERLNWGQWAACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 130 ~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~ 160 (171)
..-+..+|......-++.++..++.+..|||
T Consensus 75 ~~~~~~~~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 75 LVYDPQDWITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp -SS-HHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445667777777777778888888888775
No 37
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=22.85 E-value=37 Score=17.01 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=9.8
Q ss_pred CCCCccCcCCCCCC
Q 048825 12 EQPTNDLMSKPPVG 25 (171)
Q Consensus 12 ep~e~~iM~rpPr~ 25 (171)
.|+..|++.++|.+
T Consensus 8 spapsdils~~pqs 21 (29)
T PF05570_consen 8 SPAPSDILSSKPQS 21 (29)
T ss_pred CCCcHHHHhcCccc
Confidence 46667888877754
No 38
>PHA00726 hypothetical protein
Probab=22.70 E-value=35 Score=22.37 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=9.9
Q ss_pred CCCCCCCCC-CCCcHHHHH
Q 048825 20 SKPPVGRSE-PLITKLMWR 37 (171)
Q Consensus 20 ~rpPr~~~e-~il~~~~~~ 37 (171)
=|||.+++| .-.|.+.+.
T Consensus 26 FRKpK~k~~~~~~~~r~iG 44 (89)
T PHA00726 26 FRKPKPKKVKSTLNHRSIG 44 (89)
T ss_pred hcCCCCchhhcCCCCccee
Confidence 466666555 455655543
No 39
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.63 E-value=1.5e+02 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=16.1
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHH
Q 048825 94 NIFKGIHKNKLFLAIIGITIVLQLIM 119 (171)
Q Consensus 94 ~~~~~~~~N~~l~~~~~~~~~l~~~~ 119 (171)
+++...+.|.+.+...++.+++.+++
T Consensus 39 ~~~~~~~~~~~~~i~qlInFlIlv~l 64 (205)
T PRK06231 39 SIINELFPNFWVFIAHLIAFSILLLL 64 (205)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 44556677877766666666655543
No 40
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.41 E-value=3.3e+02 Score=20.21 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=6.0
Q ss_pred HHhhhhhcccc
Q 048825 121 EFLKKFADTER 131 (171)
Q Consensus 121 p~~~~~f~~~~ 131 (171)
..+-.+|+.++
T Consensus 35 ~llI~lFg~~~ 45 (165)
T PF11286_consen 35 QLLIALFGGES 45 (165)
T ss_pred HHHHHHcCCCC
Confidence 44566677433
No 41
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=22.33 E-value=67 Score=18.92 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=8.6
Q ss_pred HHHhhhhhccccCCh
Q 048825 120 VEFLKKFADTERLNW 134 (171)
Q Consensus 120 vp~~~~~f~~~~l~~ 134 (171)
.|..+++++.-...+
T Consensus 34 s~~g~~~~~~l~~~w 48 (53)
T PF12555_consen 34 SPAGQSFLDLLADTW 48 (53)
T ss_pred CccHHHHHHHHHHHH
Confidence 366677776544433
No 42
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=21.13 E-value=53 Score=22.90 Aligned_cols=39 Identities=5% Similarity=-0.200 Sum_probs=15.3
Q ss_pred hhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 048825 123 LKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSG 161 (171)
Q Consensus 123 ~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~ 161 (171)
..-+|+..|..+.+...+..+.+..+...-+.+|.|+.+
T Consensus 48 ~afvf~~~~p~p~~iffavcI~l~~~s~~lLI~WYR~gd 86 (118)
T PF10856_consen 48 SAFVFPQDPPKPLHIFFAVCILLICISAILLIFWYRQGD 86 (118)
T ss_pred heEEecCCCCCceEEehHHHHHHHHHHHHhheeehhcCC
Confidence 344455454444343332222222222223345555544
No 43
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.95 E-value=2.9e+02 Score=22.39 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=3.4
Q ss_pred hhhhhcc
Q 048825 123 LKKFADT 129 (171)
Q Consensus 123 ~~~~f~~ 129 (171)
+..++|.
T Consensus 280 IaGiyGM 286 (324)
T PRK09546 280 LTGLFGV 286 (324)
T ss_pred HHhhhcc
Confidence 3455544
No 44
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=20.84 E-value=2e+02 Score=23.61 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=16.6
Q ss_pred HhhhhhccccCChhHHHHHHHHHHHH
Q 048825 122 FLKKFADTERLNWGQWAACIGIAAMS 147 (171)
Q Consensus 122 ~~~~~f~~~~l~~~~w~~~~~~~~~~ 147 (171)
.++.+++.-|.+..|+++++.+..+.
T Consensus 13 ~l~~~~g~~PFSvgdi~~~~~il~ll 38 (318)
T PF12725_consen 13 LLRRLFGWFPFSVGDILYYLLILFLL 38 (318)
T ss_pred HHHHhccCcChhHHHHHHHHHHHHHH
Confidence 35667777777777776665444433
No 45
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=20.74 E-value=3.8e+02 Score=20.27 Aligned_cols=41 Identities=10% Similarity=-0.085 Sum_probs=24.7
Q ss_pred HHHhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 048825 120 VEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 120 vp~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~ 160 (171)
+|++=.+|--.|+++.||..=+-.-+...+.....+-++++
T Consensus 28 ~YGlLAlfTG~~ls~~Q~s~YlySi~~L~~~~~~l~~Irk~ 68 (189)
T PF08552_consen 28 LYGLLALFTGHPLSFLQLSMYLYSILALVLFAWGLPHIRKQ 68 (189)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHhccC
Confidence 47777788778899888866443333333333445555543
No 46
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=20.43 E-value=91 Score=20.60 Aligned_cols=18 Identities=11% Similarity=0.433 Sum_probs=14.3
Q ss_pred CChhHHHHHHHHHHHHHH
Q 048825 132 LNWGQWAACIGIAAMSWP 149 (171)
Q Consensus 132 l~~~~w~~~~~~~~~~~~ 149 (171)
+++.+|+++++++++++.
T Consensus 4 ig~~elliIlvV~lllfG 21 (94)
T COG1826 4 IGWSELLIILVVALLVFG 21 (94)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 788999998888777653
No 47
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=20.05 E-value=1.8e+02 Score=18.08 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=11.3
Q ss_pred ccCChhHHHHHHHHH
Q 048825 130 ERLNWGQWAACIGIA 144 (171)
Q Consensus 130 ~~l~~~~w~~~~~~~ 144 (171)
..|++.||.++..++
T Consensus 29 ~GLslneWfyiati~ 43 (66)
T PF10746_consen 29 WGLSLNEWFYIATIA 43 (66)
T ss_pred cCCCHHHHHHHHHHH
Confidence 478999999875544
Done!