Query 048825
Match_columns 171
No_of_seqs 174 out of 1128
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 00:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 100.0 4.8E-29 1.6E-33 227.3 17.3 166 1-167 824-1029(1034)
2 2zxe_A Na, K-ATPase alpha subu 99.9 2.8E-26 9.5E-31 209.0 13.3 160 1-161 819-1017(1028)
3 3ar4_A Sarcoplasmic/endoplasmi 99.9 1.8E-25 6.3E-30 203.1 18.2 160 1-161 800-992 (995)
4 1mhs_A Proton pump, plasma mem 99.7 1.1E-17 3.9E-22 150.6 8.9 150 1-163 729-883 (920)
5 3b8c_A ATPase 2, plasma membra 99.0 6.2E-13 2.1E-17 119.6 -12.6 148 2-160 684-843 (885)
6 2voy_D Sarcoplasmic/endoplasmi 49.8 22 0.00074 17.2 3.4 21 36-56 3-23 (26)
7 1kf6_D Fumarate reductase 13 k 22.7 12 0.00041 25.1 -0.8 13 19-31 2-14 (119)
8 4ev6_A Magnesium transport pro 19.7 92 0.0032 24.2 3.6 7 123-129 295-301 (339)
9 2iub_A CORA, divalent cation t 16.2 1.7E+02 0.0059 22.9 4.5 38 123-160 319-360 (363)
10 1d6g_A CCK-A-receptor, cholecy 14.8 84 0.0029 17.4 1.6 19 9-28 20-38 (47)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.96 E-value=4.8e-29 Score=227.27 Aligned_cols=166 Identities=13% Similarity=0.169 Sum_probs=141.0
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCC-CCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCC---------------
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGR-SEPLITKLMWRNL-IPQAIYQVTILLTLQFKGRSIFSV--------------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~-~e~il~~~~~~~i-~~~g~~~~~~~~~~~~~~~~~~g~--------------- 63 (171)
||++||++|++||||+|+|+||||++ ++++++++++..+ +..|++++++++..|++.....|.
T Consensus 824 ~d~~palal~~e~~~~~~m~~~Pr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 903 (1034)
T 3ixz_A 824 TDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENH 903 (1034)
T ss_pred HHHHHHHHhhcCCCChhhhhCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccccccc
Confidence 68999999999999999999999998 7999999987664 456999998888888764421110
Q ss_pred ---c-----------------ccchhhHHHHHHHHHHHHHHHHhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHHH--
Q 048825 64 ---N-----------------ESVKDTMIFNTFVFCQIFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIMV-- 120 (171)
Q Consensus 64 ---~-----------------~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~v-- 120 (171)
+ ...+||++|++++++|++|+++||+.+ .++|+ +.++|+++++++++++++|++++
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~q~~~~~~~r~~~-~s~~~~~~~~N~~l~~~~~~~~~l~~~~~~~ 982 (1034)
T 3ixz_A 904 HLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTRR-LSAFQQGFFRNRILVIAIVFQVCIGCFLCYC 982 (1034)
T ss_pred cccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccCC-CcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 0 013899999999999999999999964 67775 77899999999999999998764
Q ss_pred HHhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 048825 121 EFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGTQLLFK 167 (171)
Q Consensus 121 p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~~~~~~ 167 (171)
|+++.+|++.|+++.+|++++++++++++++|++|++.|+.+..-+.
T Consensus 983 p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~~~~~~ 1029 (1034)
T 3ixz_A 983 PGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGSWWD 1029 (1034)
T ss_pred hhHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence 78999999999999999999999999999999999998876554443
No 2
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.94 E-value=2.8e-26 Score=208.99 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=135.7
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCC-CCCcHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCC---------------
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSE-PLITKLMWRN-LIPQAIYQVTILLTLQFKGRSIFSV--------------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e-~il~~~~~~~-i~~~g~~~~~~~~~~~~~~~~~~g~--------------- 63 (171)
||++|+++|++||+++++|+||||++++ ++++++++.. ++..|+++++++++.|++.....|.
T Consensus 819 ~d~~pa~al~~e~~~~~~m~~~Pr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 898 (1028)
T 2zxe_A 819 TDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDR 898 (1028)
T ss_dssp TTHHHHHHGGGCCCSSCGGGSCCCCTTTCCSSCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCHHHHSCT
T ss_pred HHHHHHHHhccCccchhhhccCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhcccchhccc
Confidence 6899999999999999999999999776 9999998766 5677999998888887653211111
Q ss_pred ---------c-----------ccchhhHHHHHHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHH--H
Q 048825 64 ---------N-----------ESVKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV--E 121 (171)
Q Consensus 64 ---------~-----------~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~v--p 121 (171)
+ ..++||++|++++++|++|.++||+.+ .++|+..++|+++++++++++++|++++ |
T Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~T~~f~~~v~~q~~~~~~~r~~~-~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~p 977 (1028)
T 2zxe_A 899 WISDVEDSFGQQWTYEQRKIVEFTCHTSFFISIVVVQWADLIICKTRR-NSIFQQGMKNKILIFGLFEETALAAFLSYCP 977 (1028)
T ss_dssp TCCCEECTTSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS-SCHHHHCSCCHHHHHHHHHHHHHHHHHHHST
T ss_pred cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCC-cchhccCCcCHHHHHHHHHHHHHHHHHHHhh
Confidence 0 026899999999999999999999964 5667644899999999999999998776 5
Q ss_pred HhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 048825 122 FLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSG 161 (171)
Q Consensus 122 ~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~ 161 (171)
+++.+|+++|+++.+|++++++++..+++.|++|++.|+.
T Consensus 978 ~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~k~~~r~~ 1017 (1028)
T 2zxe_A 978 GTDVALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFIIRRS 1017 (1028)
T ss_dssp THHHHTCCCCCCGGGGGTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7899999999999999999999999999999999987754
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.93 E-value=1.8e-25 Score=203.13 Aligned_cols=160 Identities=19% Similarity=0.229 Sum_probs=136.5
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCC----------------
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRS-IFSV---------------- 63 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~-~~g~---------------- 63 (171)
+|++|+++|+.||+|+++|+||||++++++++++++.+++.+|++++++++..|.+... ..+.
T Consensus 800 ~d~~p~l~l~~~~~~~~~m~~~P~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (995)
T 3ar4_A 800 TDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTE 879 (995)
T ss_dssp TTHHHHHHHTTCCCCTTGGGSCCCCTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSSSCCCTTCCGGGCSSCSS
T ss_pred HHHHHHHhhccCCCChhHHhCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhcccccccc
Confidence 68999999999999999999999999999999999988999999999888776544221 0000
Q ss_pred -------------cccchhhHHHHHHHHHHHHHHHHhhcCCccccc-cccccCHHHHHHHHHHHHHHHHHH--HHhhhhh
Q 048825 64 -------------NESVKDTMIFNTFVFCQIFNEFNARKLEKKNIF-KGIHKNKLFLAIIGITIVLQLIMV--EFLKKFA 127 (171)
Q Consensus 64 -------------~~~~a~T~~F~~lv~~q~~~~~~~Rs~~~~~~~-~~~~~N~~l~~~~~~~~~l~~~~v--p~~~~~f 127 (171)
...++||++|+++|++|++|.++||+.+ .+++ .+.++|++++++++++++++++++ |+++++|
T Consensus 880 ~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~r~~~-~~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f 958 (995)
T 3ar4_A 880 DHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSEN-QSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIF 958 (995)
T ss_dssp CCSCCSCSCCCGGGCHHHHHHHHHHHHHHHHHHHHTTSCSS-CCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTHHHHHT
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccc-cchhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0135899999999999999999999975 4555 477899999999999988888765 5789999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 048825 128 DTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSG 161 (171)
Q Consensus 128 ~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~ 161 (171)
++.|+++.+|+++++++++.++++|++|++.|+.
T Consensus 959 ~~~~l~~~~w~~~~~~~~~~~~~~e~~k~~~r~~ 992 (995)
T 3ar4_A 959 KLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 992 (995)
T ss_dssp TCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999997754
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.71 E-value=1.1e-17 Score=150.56 Aligned_cols=150 Identities=11% Similarity=0.001 Sum_probs=116.8
Q ss_pred CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cC--CcccchhhHHHHH
Q 048825 1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSI---FS--VNESVKDTMIFNT 75 (171)
Q Consensus 1 tD~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~---~g--~~~~~a~T~~F~~ 75 (171)
+|. |+++|++||++++ ||||+++++ +++..++..|.+++++++..|.+.... .+ .+..++||++|++
T Consensus 729 ~d~-~~lal~~e~~~~~---~~P~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~f~~ 800 (920)
T 1mhs_A 729 ADV-ATLAIAYDNAPYS---QTPVKWNLP----KLWGMSVLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEVLFLQ 800 (920)
T ss_dssp HTT-HHHHCCCCCSGGG---GSCCCCCSS----SCSSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSSSSSSSHHHHHHHH
T ss_pred HHH-HhhhhcccCcccc---cCCCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 355 8999999999876 789887763 344445678888888877777554321 11 1234689999999
Q ss_pred HHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHhhhhhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 048825 76 FVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFK 155 (171)
Q Consensus 76 lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~vp~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K 155 (171)
++++|+++.+++|+.+ .++++ +.|++++.++++..++++.+.+ .+ +|+++|+++.+|+.+++++++.+++.|+.|
T Consensus 801 lv~~~~~~~~~~R~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~f~~~~l~~~~~~~~~~~~~~~~~~~e~~k 875 (920)
T 1mhs_A 801 ISLTENWLIFITRANG--PFWSS-IPSWQLSGAIFLVDILATCFTI-WG-WFEHSDTSIVAVVRIWIFSFGIFCIMGGVY 875 (920)
T ss_dssp HHHHHHHHTTSSSCSS--SCSCC-SCTHHHHHHHHHHHHHHHHHHS-SS-STTSCSHHHHTHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccch--hhhcC-chHHHHHHHHHHHHHHHHHHHH-hh-hhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999963 46654 4899988888887777776543 33 899999999999999999999999999999
Q ss_pred hhcccccc
Q 048825 156 CIPVSGTQ 163 (171)
Q Consensus 156 ~~~r~~~~ 163 (171)
++.++.+.
T Consensus 876 ~~~~~~~~ 883 (920)
T 1mhs_A 876 YILQDSVG 883 (920)
T ss_dssp HCCCCCCT
T ss_pred HHHhhhHH
Confidence 98876643
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=98.97 E-value=6.2e-13 Score=119.62 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=97.0
Q ss_pred chhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCc-----ccchhh
Q 048825 2 DTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTILLTLQFKGRSI------FSVN-----ESVKDT 70 (171)
Q Consensus 2 D~~palaL~~ep~e~~iM~rpPr~~~e~il~~~~~~~i~~~g~~~~~~~~~~~~~~~~~------~g~~-----~~~a~T 70 (171)
|+.+ ++++.|++++ ||++++..+ ++++...+..|.++++.++..|++.... .|.+ ..++||
T Consensus 684 d~~~-l~l~~~~~~~------~~~p~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 755 (885)
T 3b8c_A 684 DGTI-MTISKDRVKP------SPTPDSWKL-KEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMG 755 (885)
T ss_dssp HTTT-CCCCCCCCCC------SSCCCSTTT-TTTTTTHHHHHSSTHHHHTTSSSCTTTTTTTTCCCCSSCCGGGTHHHHT
T ss_pred HHHH-HhhcccccCc------ccCCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCcccccchHHHHHH
Confidence 4544 8888888654 444444444 5555556788888888888777554310 1211 234555
Q ss_pred H-HHHHHHHHHHHHHHHhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHhhhhhccccCChhHHHHHHHHHHHHHH
Q 048825 71 M-IFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWP 149 (171)
Q Consensus 71 ~-~F~~lv~~q~~~~~~~Rs~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~vp~~~~~f~~~~l~~~~w~~~~~~~~~~~~ 149 (171)
. +|.+++++|+ ++|++|+.+ .++++.. .|++++..++..++++++.++....+|++.|+++.+|+++++.+++.++
T Consensus 756 ~~~~~~~~~~~~-~~~~~Rs~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 832 (885)
T 3b8c_A 756 AVYLQVSIISQA-LIFVTRSRS-WSFVERP-GALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYF 832 (885)
T ss_dssp TTTTTTSSTTGG-GTTCSSSCT-TTSTTST-TTTTSGGGSSTTTTTTSSSSSCCCCSSCCCCCTTTTHHHHHHHTGGGTH
T ss_pred HHHHHHHHHHHH-HHHHhccCC-CCcccCc-cHHHHHHHHHHHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHHH
Confidence 5 5667888887 899999964 4444422 4554444444444444444443234567999999999999999999999
Q ss_pred HHHHHHhhccc
Q 048825 150 IGFLFKCIPVS 160 (171)
Q Consensus 150 ~~e~~K~~~r~ 160 (171)
+.|++|++.|+
T Consensus 833 ~~e~~k~~~~~ 843 (885)
T 3b8c_A 833 PLDVFKFAIRY 843 (885)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 6
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=49.79 E-value=22 Score=17.18 Aligned_cols=21 Identities=5% Similarity=-0.114 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048825 36 WRNLIPQAIYQVTILLTLQFK 56 (171)
Q Consensus 36 ~~~i~~~g~~~~~~~~~~~~~ 56 (171)
+.+++.+|++.+.++.+.|.+
T Consensus 3 ~~Ry~viG~yvg~aTvg~f~~ 23 (26)
T 2voy_D 3 FFRYMAIGGYVGAATVGAAAW 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhheeEE
Confidence 456889999999999888764
No 7
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=22.72 E-value=12 Score=25.12 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=9.9
Q ss_pred cCCCCCCCCCCCC
Q 048825 19 MSKPPVGRSEPLI 31 (171)
Q Consensus 19 M~rpPr~~~e~il 31 (171)
|++.|++++||++
T Consensus 2 ~~~~pkRS~EPi~ 14 (119)
T 1kf6_D 2 INPNPKRSDEPVF 14 (119)
T ss_dssp CCSSCCCCSHHHH
T ss_pred CCCCcCcCCCCch
Confidence 6778888888753
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=19.68 E-value=92 Score=24.23 Aligned_cols=7 Identities=0% Similarity=0.007 Sum_probs=4.1
Q ss_pred hhhhhcc
Q 048825 123 LKKFADT 129 (171)
Q Consensus 123 ~~~~f~~ 129 (171)
+..+||.
T Consensus 295 IaGiyGM 301 (339)
T 4ev6_A 295 ITGIYGM 301 (339)
T ss_dssp HHHHTTC
T ss_pred HHhhccC
Confidence 4566665
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=16.24 E-value=1.7e+02 Score=22.91 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=12.7
Q ss_pred hhhhhccc--cCChhHH--HHHHHHHHHHHHHHHHHHhhccc
Q 048825 123 LKKFADTE--RLNWGQW--AACIGIAAMSWPIGFLFKCIPVS 160 (171)
Q Consensus 123 ~~~~f~~~--~l~~~~w--~~~~~~~~~~~~~~e~~K~~~r~ 160 (171)
+..+||.. .++..+| ++.+.+++...+..-+.-+++|+
T Consensus 319 IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk 360 (363)
T 2iub_A 319 IAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKK 360 (363)
T ss_dssp HTTSCC--------------CHHHHHHHHHHHHHHHTTTTSC
T ss_pred HHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666542 3444333 44333333333333344455553
No 10
>1d6g_A CCK-A-receptor, cholecystokinin type A receptor; alpha-helix, beta-sheet, complex GPCR-ligand, hormone/growth factor complex; NMR {Synthetic} SCOP: g.33.1.1
Probab=14.76 E-value=84 Score=17.40 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=11.1
Q ss_pred hccCCCCccCcCCCCCCCCC
Q 048825 9 LATEQPTNDLMSKPPVGRSE 28 (171)
Q Consensus 9 L~~ep~e~~iM~rpPr~~~e 28 (171)
++.|...-.+.+| ||+++|
T Consensus 20 ~g~~~~~~~cl~~-P~~~kE 38 (47)
T 1d6g_A 20 LGLENETLFCLDQ-PRPSKE 38 (47)
T ss_dssp CSSSSSCCBSCCC-CSSCSS
T ss_pred cCcCccccccccC-CCCchh
Confidence 3444445566766 776665
Done!