BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048826
(725 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 19/163 (11%)
Query: 420 LEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGC--SKLESIAERLDNN 477
L L I +CP LT ELP L S + L +L + + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE--GGLLCAKLTRLTILD 535
+L+ + I N L L +H+L +L+E+ ++ C L ++P GG A L RL + D
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 536 CKRLEALPKGLHNLTSLQQLTIGKG----GELPSLEEDGLPTN 574
C L LP +H LT L++L + +G LPSL LP N
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDL-RGCVNLSRLPSLIAQ-LPAN 303
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 112/279 (40%), Gaps = 58/279 (20%)
Query: 246 KSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRY--CKGLV 303
K+ +LL+D R+ ++ L+S+ + DQ + RL +L+ GL
Sbjct: 69 KATADLLEDATQPGRVALE----LRSVPLPQFPDQ-------AFRLSHLQHXTIDAAGLX 117
Query: 304 KLPQXXXXXXXXREIEIYKCSSLVSFP-EVALPSKLKKIQFRECDALKLLPEAWMSDTNS 362
+LP + + + + L + P +A ++L+++ R C L LPE ++ T++
Sbjct: 118 ELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDA 175
Query: 363 SLEILSIWVCHSLTY-LAGVQ-LPRSLKRLVILNCDNIRTLTMEEGIQXXXXXXXXXXLL 420
S E + SL G++ LP S I N N+++L + +
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIRSLPAS-----IANLQNLKSLKIRNS-----PLSALGPAI 225
Query: 421 EHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSL 480
HL P L+ L + GC+ L + L
Sbjct: 226 HHL------------------------------PKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 481 EYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFP 519
+ + + +C NL LP +H L QL+++ ++ C NL P
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 46/192 (23%)
Query: 258 LKRLTIDSCPKL----QSLVAEEEKDQQQQLCEL-SCRLEYLRLRYCKGLVKLPQXXXXX 312
L+ L+I +CP+L + L + + + Q L L S RLE+ G+ LP
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW------TGIRSLPASIANL 205
Query: 313 XXXREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVC 372
+ ++I P + KL+++ R C AL+ P +
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF---------------- 249
Query: 373 HSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQXXXXXXXXXXLLEHLHIESCPSLT 432
G + P LKRL++ +C N+ TL ++ LE L + C +L+
Sbjct: 250 -------GGRAP--LKRLILKDCSNLLTLPLD---------IHRLTQLEKLDLRGCVNLS 291
Query: 433 RIFS-KNELPAT 443
R+ S +LPA
Sbjct: 292 RLPSLIAQLPAN 303
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 60/98 (61%), Gaps = 9/98 (9%)
Query: 463 GCSKLESIAERLDNN-TSLEYINISNCENLKILPSGLHN-LRQLQEITIQRCGNLESFPE 520
G +KL+S+ + N TSL Y+N+S L+ LP+G+ + L QL+E+ + L+S P+
Sbjct: 60 GGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKELALNT-NQLQSLPD 117
Query: 521 GGLLCAKLTRLTILDC--KRLEALPKGLHN-LTSLQQL 555
G + KLT+L L +L+++P G+ + LTSLQ +
Sbjct: 118 G--VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 130/338 (38%), Gaps = 90/338 (26%)
Query: 425 IESCPSLTRIFSKNELPATLESLEVGN--------LPPSLKSLSVYGCSKLESIAERLDN 476
+ SC SLT + ELP +L+SL V N LPP L+ L V ++LE + E L N
Sbjct: 97 VASCNSLTEL---PELPQSLKSLLVDNNNLKALSDLPPLLEYLGV-SNNQLEKLPE-LQN 151
Query: 477 NTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL-- 534
++ L+ I++ N +LK LP +L E LE PE L LT +
Sbjct: 152 SSFLKIIDVDN-NSLKKLP----DLPPSLEFIAAGNNQLEELPE----LQNLPFLTAIYA 202
Query: 535 DCKRLEALPKGLHNLTSLQQLTIGKG--GELPSLEE-----------------DGLPTNL 575
D L+ LP SL+ + G ELP L+ LP +L
Sbjct: 203 DNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSL 259
Query: 576 HSLWIEDNM-----EIWKSMIERGRGFHRFSSLRRLT----IINCDDDMV----SFPPEP 622
+L + DN E+ +S+ + FS L L +N + + PP
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319
Query: 623 EDVRXXXXXXXXXXXXXXWISNFPNLERLSSSIVDL-------QNLTSLYLLDCPKLRYF 675
E++ P LERL +S L QNL L++ P LR F
Sbjct: 320 EELNVSNNKLIELPALP------PRLERLIASFNHLAEVPELPQNLKQLHVEYNP-LREF 372
Query: 676 PE-----------------KGLPSSLLQLHIYRCPLIE 696
P+ LP +L QLH+ PL E
Sbjct: 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410
>pdb|4AFG|A Chain A, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|B Chain B, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|C Chain C, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|D Chain D, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|E Chain E, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFH|A Chain A, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|B Chain B, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|C Chain C, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|D Chain D, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|E Chain E, Capitella Teleta Achbp In Complex With Lobeline
pdb|4B5D|A Chain A, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|B Chain B, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|C Chain C, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|D Chain D, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|E Chain E, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
Length = 230
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 549 LTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI 608
L + +QL GK G LP L++ G L ++++ KS+ +RG GF+ + + +
Sbjct: 14 LNTYEQL--GKSG-LPFLDDIGKVDVKFGL----SLQLLKSIEQRGMGFNSIGTFKAIVK 66
Query: 609 INCDDDMVSFPPEP 622
++ D ++ + PEP
Sbjct: 67 LSWVDTILRWDPEP 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,889,214
Number of Sequences: 62578
Number of extensions: 840020
Number of successful extensions: 1772
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1761
Number of HSP's gapped (non-prelim): 12
length of query: 725
length of database: 14,973,337
effective HSP length: 106
effective length of query: 619
effective length of database: 8,340,069
effective search space: 5162502711
effective search space used: 5162502711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)