Query 048826
Match_columns 725
No_of_seqs 269 out of 3298
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-36 4.2E-41 360.0 26.3 513 56-680 70-592 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.9E-36 2.1E-40 354.0 26.3 510 77-695 68-584 (968)
3 KOG0472 Leucine-rich repeat pr 99.9 1.3E-27 2.7E-32 230.6 -19.2 483 32-671 47-540 (565)
4 KOG0618 Serine/threonine phosp 99.9 5.2E-26 1.1E-30 241.5 -9.2 444 23-585 38-488 (1081)
5 KOG4194 Membrane glycoprotein 99.9 3.3E-24 7.2E-29 216.3 2.8 223 454-691 221-448 (873)
6 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.7E-26 233.0 22.8 313 315-676 591-910 (1153)
7 KOG4194 Membrane glycoprotein 99.9 1.1E-23 2.3E-28 212.7 3.7 318 256-666 125-446 (873)
8 PLN03210 Resistant to P. syrin 99.9 9.9E-21 2.2E-25 225.4 24.7 275 24-349 552-838 (1153)
9 KOG0444 Cytoskeletal regulator 99.8 3.6E-23 7.9E-28 210.1 -4.5 224 456-697 152-377 (1255)
10 KOG0618 Serine/threonine phosp 99.8 9.2E-23 2E-27 217.0 -4.4 419 177-695 42-489 (1081)
11 KOG0472 Leucine-rich repeat pr 99.8 3.9E-24 8.4E-29 206.6 -13.6 450 24-561 62-539 (565)
12 KOG0444 Cytoskeletal regulator 99.8 7.1E-22 1.5E-26 200.8 -5.4 179 455-652 198-379 (1255)
13 PRK15387 E3 ubiquitin-protein 99.5 1.6E-13 3.4E-18 152.0 13.9 132 30-191 201-333 (788)
14 PRK15387 E3 ubiquitin-protein 99.5 2.2E-13 4.8E-18 150.9 14.5 72 289-372 201-272 (788)
15 KOG4237 Extracellular matrix p 99.3 1.8E-13 3.9E-18 133.3 -1.2 288 41-373 57-357 (498)
16 PRK15370 E3 ubiquitin-protein 99.3 5.4E-12 1.2E-16 141.0 7.7 244 30-373 178-426 (754)
17 KOG0617 Ras suppressor protein 99.3 1.5E-13 3.2E-18 118.3 -4.6 159 455-624 34-194 (264)
18 KOG4237 Extracellular matrix p 99.2 2.1E-13 4.6E-18 132.8 -5.8 196 455-677 275-481 (498)
19 PRK15370 E3 ubiquitin-protein 99.2 3.2E-11 6.9E-16 134.9 10.5 223 418-693 199-426 (754)
20 KOG0617 Ras suppressor protein 99.1 1.3E-12 2.8E-17 112.6 -4.0 160 474-677 29-190 (264)
21 KOG4341 F-box protein containi 99.1 1.2E-12 2.6E-17 128.7 -5.6 89 30-122 138-230 (483)
22 KOG4341 F-box protein containi 99.1 1.6E-12 3.4E-17 127.9 -6.1 285 55-379 138-443 (483)
23 cd00116 LRR_RI Leucine-rich re 99.1 3E-11 6.5E-16 125.2 0.4 11 659-669 250-260 (319)
24 cd00116 LRR_RI Leucine-rich re 99.0 5.1E-11 1.1E-15 123.5 -0.4 211 455-670 52-289 (319)
25 KOG4658 Apoptotic ATPase [Sign 99.0 4.3E-10 9.2E-15 128.0 6.4 70 247-326 562-631 (889)
26 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 108.7 -0.2 208 455-670 122-337 (505)
27 KOG4658 Apoptotic ATPase [Sign 98.7 3.8E-09 8.2E-14 120.3 2.5 230 455-702 546-790 (889)
28 PF14580 LRR_9: Leucine-rich r 98.6 8.4E-09 1.8E-13 93.8 1.3 140 25-193 14-153 (175)
29 KOG3207 Beta-tubulin folding c 98.6 8.2E-09 1.8E-13 102.8 -0.4 34 289-323 121-156 (505)
30 PRK15386 type III secretion pr 98.6 3.2E-07 6.9E-12 93.7 10.8 94 474-582 48-141 (426)
31 KOG1259 Nischarin, modulator o 98.4 1.2E-07 2.7E-12 89.7 2.9 126 454-585 284-411 (490)
32 PF14580 LRR_9: Leucine-rich r 98.4 1.4E-07 3E-12 85.8 2.6 85 524-610 62-149 (175)
33 KOG1259 Nischarin, modulator o 98.3 1E-07 2.3E-12 90.2 -0.1 125 527-671 285-411 (490)
34 COG4886 Leucine-rich repeat (L 98.3 7.2E-07 1.6E-11 95.3 5.8 173 477-671 115-289 (394)
35 KOG0532 Leucine-rich repeat (L 98.3 4.9E-08 1.1E-12 100.5 -3.6 191 456-669 77-270 (722)
36 PLN03150 hypothetical protein; 98.2 3E-06 6.4E-11 95.0 7.2 109 456-564 420-529 (623)
37 KOG2120 SCF ubiquitin ligase, 98.1 4.2E-08 9.1E-13 92.8 -6.7 111 500-611 208-323 (419)
38 PRK15386 type III secretion pr 98.1 1.1E-05 2.3E-10 82.8 10.0 39 479-519 73-111 (426)
39 KOG1909 Ran GTPase-activating 98.1 2.7E-07 5.9E-12 89.7 -1.9 230 455-693 31-309 (382)
40 COG4886 Leucine-rich repeat (L 98.0 5.1E-06 1.1E-10 88.7 5.6 190 481-692 96-287 (394)
41 KOG2120 SCF ubiquitin ligase, 98.0 3.1E-07 6.7E-12 87.1 -3.4 110 256-373 185-297 (419)
42 PF13855 LRR_8: Leucine rich r 98.0 7.7E-06 1.7E-10 60.7 4.2 57 455-512 2-59 (61)
43 KOG1909 Ran GTPase-activating 97.9 1E-06 2.3E-11 85.7 -1.7 190 472-670 86-309 (382)
44 PF13855 LRR_8: Leucine rich r 97.9 1.9E-05 4.2E-10 58.6 4.8 57 503-560 2-59 (61)
45 PLN03150 hypothetical protein; 97.8 2.7E-05 5.9E-10 87.3 6.1 84 479-562 419-502 (623)
46 KOG0531 Protein phosphatase 1, 97.8 4.6E-06 1E-10 89.2 -0.1 123 456-585 74-198 (414)
47 KOG0532 Leucine-rich repeat (L 97.6 6.9E-06 1.5E-10 85.1 -1.7 144 456-610 100-243 (722)
48 PF12799 LRR_4: Leucine Rich r 97.5 0.0001 2.2E-09 50.0 3.2 39 55-95 1-40 (44)
49 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.6E-09 64.1 5.6 104 32-148 21-124 (233)
50 KOG1859 Leucine-rich repeat pr 97.4 7.6E-06 1.6E-10 87.1 -5.1 124 233-373 166-290 (1096)
51 KOG2982 Uncharacterized conser 97.4 0.0003 6.6E-09 67.3 5.7 190 476-677 69-267 (418)
52 KOG1859 Leucine-rich repeat pr 97.3 8.6E-06 1.9E-10 86.7 -5.6 125 455-586 165-292 (1096)
53 KOG2982 Uncharacterized conser 97.2 0.00023 5E-09 68.1 3.2 60 287-346 69-131 (418)
54 KOG1947 Leucine rich repeat pr 97.2 2.9E-05 6.4E-10 85.5 -3.4 118 249-373 181-306 (482)
55 PF12799 LRR_4: Leucine Rich r 97.1 0.00032 6.9E-09 47.6 2.4 42 30-74 1-42 (44)
56 KOG1947 Leucine rich repeat pr 97.1 9.2E-05 2E-09 81.6 -0.9 60 134-193 240-308 (482)
57 KOG0531 Protein phosphatase 1, 97.1 0.00014 3.1E-09 77.8 0.4 100 455-560 96-196 (414)
58 KOG3665 ZYG-1-like serine/thre 97.1 0.00029 6.3E-09 78.9 2.5 38 283-322 167-204 (699)
59 COG5238 RNA1 Ran GTPase-activa 96.8 0.00047 1E-08 65.2 1.4 141 522-669 88-252 (388)
60 KOG3665 ZYG-1-like serine/thre 96.7 0.0011 2.3E-08 74.5 3.4 134 138-303 123-264 (699)
61 KOG4579 Leucine-rich repeat (L 96.3 0.00057 1.2E-08 57.8 -1.3 87 573-672 27-113 (177)
62 KOG1644 U2-associated snRNP A' 96.3 0.0062 1.3E-07 55.4 4.7 13 572-584 112-124 (233)
63 KOG4579 Leucine-rich repeat (L 96.1 0.00053 1.2E-08 58.0 -2.7 103 456-561 29-134 (177)
64 KOG2123 Uncharacterized conser 95.4 0.00046 9.9E-09 65.5 -6.4 86 29-123 18-103 (388)
65 COG5238 RNA1 Ran GTPase-activa 95.2 0.029 6.3E-07 53.5 4.9 137 473-611 87-252 (388)
66 KOG2739 Leucine-rich acidic nu 95.1 0.0072 1.6E-07 57.4 0.5 82 476-560 41-126 (260)
67 KOG2739 Leucine-rich acidic nu 94.7 0.014 3.1E-07 55.4 1.6 37 476-512 63-101 (260)
68 KOG2123 Uncharacterized conser 93.8 0.0047 1E-07 58.9 -3.7 18 174-191 35-52 (388)
69 KOG3864 Uncharacterized conser 92.9 0.013 2.7E-07 53.5 -2.3 60 107-170 124-187 (221)
70 KOG3864 Uncharacterized conser 92.3 0.016 3.6E-07 52.8 -2.3 81 527-610 102-185 (221)
71 PF00560 LRR_1: Leucine Rich R 91.3 0.11 2.4E-06 29.0 1.1 19 291-310 2-20 (22)
72 PF13306 LRR_5: Leucine rich r 90.7 0.97 2.1E-05 39.1 7.2 12 547-558 78-89 (129)
73 PF13504 LRR_7: Leucine rich r 89.9 0.22 4.8E-06 25.8 1.4 10 56-65 2-11 (17)
74 PF00560 LRR_1: Leucine Rich R 89.9 0.21 4.6E-06 27.9 1.4 18 636-654 1-18 (22)
75 PF13306 LRR_5: Leucine rich r 89.0 2.2 4.7E-05 36.8 8.1 97 455-559 13-112 (129)
76 smart00370 LRR Leucine-rich re 83.9 0.65 1.4E-05 27.1 1.3 21 77-98 1-21 (26)
77 smart00369 LRR_TYP Leucine-ric 83.9 0.65 1.4E-05 27.1 1.3 21 77-98 1-21 (26)
78 smart00367 LRR_CC Leucine-rich 73.5 2.5 5.5E-05 24.6 1.6 15 659-673 2-16 (26)
79 PF13516 LRR_6: Leucine Rich r 57.5 7.5 0.00016 22.0 1.5 20 455-474 3-22 (24)
80 KOG3763 mRNA export factor TAP 52.8 7.7 0.00017 41.6 1.7 70 253-329 215-286 (585)
81 smart00364 LRR_BAC Leucine-ric 42.3 15 0.00033 21.5 1.1 17 56-73 3-19 (26)
82 smart00365 LRR_SD22 Leucine-ri 42.0 19 0.00041 21.1 1.4 17 77-94 1-17 (26)
83 KOG3763 mRNA export factor TAP 36.7 19 0.0004 38.9 1.5 35 289-323 218-254 (585)
84 smart00368 LRR_RI Leucine rich 23.4 58 0.0013 19.3 1.4 16 455-470 3-18 (28)
85 KOG0473 Leucine-rich repeat pr 23.0 3.7 8.1E-05 38.7 -5.6 33 637-670 90-122 (326)
86 KOG0473 Leucine-rich repeat pr 21.3 3.7 8E-05 38.8 -5.9 79 456-537 44-122 (326)
87 PF05725 FNIP: FNIP Repeat; I 20.0 1.6E+02 0.0035 19.6 3.3 12 679-690 31-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-36 Score=360.01 Aligned_cols=513 Identities=16% Similarity=0.162 Sum_probs=243.9
Q ss_pred CccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCCC
Q 048826 56 NLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVE 134 (725)
Q Consensus 56 ~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 134 (725)
+++.|+++++..-+.++. +..+++|+.|++++|.....+|..++. .+.+|++|+++++ ++.+.. + ..
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~-----~l~~L~~L~Ls~n-~l~~~~----p--~~ 137 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT-----TSSSLRYLNLSNN-NFTGSI----P--RG 137 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc-----cCCCCCEEECcCC-cccccc----C--cc
Confidence 455555555422222333 555555555555555422244433321 1455555555553 222211 1 13
Q ss_pred CCCCccEEEeccCcCcccccCC---CCCcceeeeeccChh---hhhhccCCCcccEEEecCCCceeEcccccccCCCCcc
Q 048826 135 GFPKLRELHVIRCSKLQGTFPE---HLPALEMLAIEKCEE---LLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSV 208 (725)
Q Consensus 135 ~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 208 (725)
.+++|++|++++| .+.+.+|. .+++|+.|++++|.. ++..+..+++|+.|++++|....
T Consensus 138 ~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-------------- 202 (968)
T PLN00113 138 SIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-------------- 202 (968)
T ss_pred ccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC--------------
Confidence 3555555555555 33333332 234455555555432 13345555666666666554211
Q ss_pred cccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhcc
Q 048826 209 VCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELS 288 (725)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~ 288 (725)
.+|..+.++++|+..++..+......+ ..+..+++|++|++++|.....++.. +..+
T Consensus 203 -------------~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~~l---- 259 (968)
T PLN00113 203 -------------QIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSS-----LGNL---- 259 (968)
T ss_pred -------------cCChHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChh-----HhCC----
Confidence 122222233333222222222211122 22355566666666664322223221 3333
Q ss_pred CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC-CCCCCCCceEEeeccCcccccccccccCCCCcccEE
Q 048826 289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEIL 367 (725)
Q Consensus 289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 367 (725)
++|++|++++|.+.+.+|..+.++++|++|++++|.....++. +..+++|+.|++++|......+..+. .+++|+.|
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L 337 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVL 337 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh--cCCCCCEE
Confidence 5666666666665555666666666666666666543333332 23355666666666554444443332 23555666
Q ss_pred EeeccCCccccccc-ccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccc
Q 048826 368 SIWVCHSLTYLAGV-QLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLES 446 (725)
Q Consensus 368 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~ 446 (725)
++.+|.....++.. ...++|+.|+++++.....+ |..+.
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~---------------------------------------p~~~~- 377 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI---------------------------------------PEGLC- 377 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC---------------------------------------ChhHh-
Confidence 65555332222211 12233333333332211111 11000
Q ss_pred cccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcC
Q 048826 447 LEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCA 526 (725)
Q Consensus 447 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 526 (725)
.. ++|+.|++++|...+.+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.....++..+..++
T Consensus 378 ----~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 378 ----SS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred ----Cc-CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 00 2356666666655555555556666666666666554445555555566666666666555555555455555
Q ss_pred cCceeeeccccCccccccccCCCCCcceeecCCCCCCCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcE
Q 048826 527 KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRR 605 (725)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 605 (725)
+|+.|++++|...+.+|..+ ..++|+.|++++|......+. ...+++|++|++++|.... . .+..+..+++|+.
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~---~p~~~~~l~~L~~ 527 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG-E---IPDELSSCKKLVS 527 (968)
T ss_pred CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee-e---CChHHcCccCCCE
Confidence 66666666665554444433 235566666666543322221 2234556666666664321 1 1123455666666
Q ss_pred EEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCC
Q 048826 606 LTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL 680 (725)
Q Consensus 606 L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 680 (725)
|++++| .....+|..+. .+++|+.|++++|+....+|..+..+++|+.|++++|+....+|..+.
T Consensus 528 L~Ls~N-~l~~~~p~~~~---------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 528 LDLSHN-QLSGQIPASFS---------EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred EECCCC-cccccCChhHh---------CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcch
Confidence 666663 22333443332 456666666666555556666556666666666666655555555433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.9e-36 Score=353.96 Aligned_cols=510 Identities=19% Similarity=0.182 Sum_probs=348.0
Q ss_pred CCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCC-CCCCCccEEEeccCcCcccccC
Q 048826 77 LPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGV-EGFPKLRELHVIRCSKLQGTFP 155 (725)
Q Consensus 77 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~p 155 (725)
...++.|+++++..-..++..+ ..++.|+.|+++++ ++.... +..+ ..+++|++|++++| .+++.+|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~------~~l~~L~~L~Ls~n-~~~~~i----p~~~~~~l~~L~~L~Ls~n-~l~~~~p 135 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAI------FRLPYIQTINLSNN-QLSGPI----PDDIFTTSSSLRYLNLSNN-NFTGSIP 135 (968)
T ss_pred CCcEEEEEecCCCccccCChHH------hCCCCCCEEECCCC-ccCCcC----ChHHhccCCCCCEEECcCC-ccccccC
Confidence 3478999999886333343333 34899999999985 444322 3444 58999999999998 5555666
Q ss_pred C-CCCcceeeeeccChhh---hhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccc
Q 048826 156 E-HLPALEMLAIEKCEEL---LASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLE 231 (725)
Q Consensus 156 ~-~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~ 231 (725)
. .+++|++|++++|... +..++.+++|+.|++++|.... .+|..+.++.
T Consensus 136 ~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~---------------------------~~p~~~~~l~ 188 (968)
T PLN00113 136 RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG---------------------------KIPNSLTNLT 188 (968)
T ss_pred ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc---------------------------cCChhhhhCc
Confidence 4 5789999999988742 5568888999999998886332 2222233333
Q ss_pred eeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCC
Q 048826 232 ELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS 311 (725)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~ 311 (725)
+|+..++.++...... +..+..+++|++|++++|.....++.. +..+ ++|++|++++|.+.+.+|..+++
T Consensus 189 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~~l----~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 189 SLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYE-----IGGL----TSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred CCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChh-----HhcC----CCCCEEECcCceeccccChhHhC
Confidence 3333333333321112 223355666666666665333333322 3333 56666666666665566666666
Q ss_pred CCCCcEEEeecCCCccccC-CCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceE
Q 048826 312 LSSLREIEIYKCSSLVSFP-EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRL 390 (725)
Q Consensus 312 l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 390 (725)
+++|++|++++|.....++ .+..+++|++|++++|.....+|..+. .+++|+.|++.+|.....++..
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~--------- 327 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLEILHLFSNNFTGKIPVA--------- 327 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc--CCCCCcEEECCCCccCCcCChh---------
Confidence 6666666666654333332 233355666666666554334443321 2355555555555322211110
Q ss_pred EeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhh
Q 048826 391 VILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESI 470 (725)
Q Consensus 391 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 470 (725)
....++|++|+++++.- . +.+|..+ +.+ ++|+.|++++|...+.+
T Consensus 328 -----------------------~~~l~~L~~L~L~~n~l-~-----~~~p~~l-----~~~-~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 328 -----------------------LTSLPRLQVLQLWSNKF-S-----GEIPKNL-----GKH-NNLTVLDLSTNNLTGEI 372 (968)
T ss_pred -----------------------HhcCCCCCEEECcCCCC-c-----CcCChHH-----hCC-CCCcEEECCCCeeEeeC
Confidence 01113466666665421 1 1122211 111 46999999999998888
Q ss_pred hhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCC
Q 048826 471 AERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLT 550 (725)
Q Consensus 471 ~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 550 (725)
|..+..+++|+.|++++|.....+|..+..+++|+.|++++|+....+|..+..+++|+.|++++|.....++..+..++
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 99999999999999999888788898899999999999999988888898899999999999999998888888888999
Q ss_pred CcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcc
Q 048826 551 SLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTT 630 (725)
Q Consensus 551 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~ 630 (725)
+|+.|++++|.....++.....++|+.|++++|+... . .+..+..+++|+.|++++| .....+|..++
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~-~---~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~------- 520 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG-A---VPRKLGSLSELMQLKLSEN-KLSGEIPDELS------- 520 (968)
T ss_pred CCcEEECcCceeeeecCcccccccceEEECcCCccCC-c---cChhhhhhhccCEEECcCC-cceeeCChHHc-------
Confidence 9999999999765555554455899999999997642 1 1245778999999999994 44556776653
Q ss_pred cCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCC-CCcccccEEEecCCchh
Q 048826 631 LPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCPLI 695 (725)
Q Consensus 631 ~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l 695 (725)
.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|.. ..+++|++|++++|+-.
T Consensus 521 --~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 521 --SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred --CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 6789999999998877788988899999999999998776677764 23678999999998743
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.3e-27 Score=230.57 Aligned_cols=483 Identities=21% Similarity=0.235 Sum_probs=254.6
Q ss_pred cceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826 32 LKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL 110 (725)
Q Consensus 32 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 110 (725)
|..|.++.+....+-..+. .+..|++|+++++ .+.++|+ ++++..++.|+++.+. +.++|+.. +..+.|
T Consensus 47 l~~lils~N~l~~l~~dl~--nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i------~s~~~l 116 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLK--NLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNK-LSELPEQI------GSLISL 116 (565)
T ss_pred hhhhhhccCchhhccHhhh--cccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccch-HhhccHHH------hhhhhh
Confidence 3444445444443332222 2445555555554 4455544 5555555555555554 44444433 123444
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCC---CcceeeeeccChhh--hhhccCCCcccEE
Q 048826 111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHL---PALEMLAIEKCEEL--LASITCLPALCKL 185 (725)
Q Consensus 111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l---~~L~~L~l~~~~~l--~~~~~~~~~L~~L 185 (725)
..|+.++. ++.+. +++++.+..|+.++..++ ++. +.|..+ .++..+++.++... ++..-.++.|+++
T Consensus 117 ~~l~~s~n-~~~el-----~~~i~~~~~l~dl~~~~N-~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 117 VKLDCSSN-ELKEL-----PDSIGRLLDLEDLDATNN-QIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhcccc-ceeec-----CchHHHHhhhhhhhcccc-ccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 55544442 33333 344444555555555554 333 444432 34455555554422 3333347788888
Q ss_pred EecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEcc
Q 048826 186 KIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDS 265 (725)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 265 (725)
+...|- -+.+|+.++.+++|...+++.++. ...+. |.++..|++|.+..
T Consensus 189 d~~~N~----------------------------L~tlP~~lg~l~~L~~LyL~~Nki--~~lPe-f~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 189 DCNSNL----------------------------LETLPPELGGLESLELLYLRRNKI--RFLPE-FPGCSLLKELHVGE 237 (565)
T ss_pred ccchhh----------------------------hhcCChhhcchhhhHHHHhhhccc--ccCCC-CCccHHHHHHHhcc
Confidence 876653 346778888899988888888777 22233 47777888888876
Q ss_pred CCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeec
Q 048826 266 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRE 345 (725)
Q Consensus 266 ~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~ 345 (725)
+.++.++.+ ....+ ++|.+|||+.|++ ..+|..+..+.+|..||+++|....-.+..+.+ .|+.|-+.|
T Consensus 238 -N~i~~lpae----~~~~L----~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 238 -NQIEMLPAE----HLKHL----NSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred -cHHHhhHHH----Hhccc----ccceeeecccccc-ccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence 567776654 24455 7888899988876 678888888888889999887644334456666 778888888
Q ss_pred cCcccccccccccCCC-CcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEE
Q 048826 346 CDALKLLPEAWMSDTN-SSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLH 424 (725)
Q Consensus 346 ~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 424 (725)
++ +..+...+...+. .-|++|.=. ..|..+..-. ++....
T Consensus 307 NP-lrTiRr~ii~~gT~~vLKyLrs~----------------------~~~dglS~se--~~~e~~-------------- 347 (565)
T KOG0472|consen 307 NP-LRTIRREIISKGTQEVLKYLRSK----------------------IKDDGLSQSE--GGTETA-------------- 347 (565)
T ss_pred Cc-hHHHHHHHHcccHHHHHHHHHHh----------------------hccCCCCCCc--cccccc--------------
Confidence 77 4444333322211 112221100 0000000000 000000
Q ss_pred EeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCC---CccEEEecCCCCcccccccccCC
Q 048826 425 IESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNT---SLEYINISNCENLKILPSGLHNL 501 (725)
Q Consensus 425 l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~~l~~~~~~l 501 (725)
.+ .+...+|.. +. ..+.+.|++++-..+. +|..+.... -....++++ +.+.++|..+..+
T Consensus 348 ---~t-----~~~~~~~~~------~~-~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~l 410 (565)
T KOG0472|consen 348 ---MT-----LPSESFPDI------YA-IITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVEL 410 (565)
T ss_pred ---CC-----CCCCcccch------hh-hhhhhhhccccccccc-CCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHH
Confidence 00 000000100 00 0135555555543332 232222111 256667776 4556667666666
Q ss_pred CcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCC-Ccccccceec
Q 048826 502 RQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDG-LPTNLHSLWI 580 (725)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l 580 (725)
..+.+.-+..++.+..+|..+..+++|..|++++|. +..+|..++.+..|+.|+++.| ..+..|... .+..++.+-.
T Consensus 411 kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtlla 488 (565)
T KOG0472|consen 411 KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLA 488 (565)
T ss_pred HHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHh
Confidence 666555555556666677777777777777777765 6677777777777777777777 333333222 1233333333
Q ss_pred ccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcC
Q 048826 581 EDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQN 660 (725)
Q Consensus 581 ~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~ 660 (725)
++|+. ..++... ..++.+|..|++.+ +.+..||..+.++.+
T Consensus 489 s~nqi------------------------------~~vd~~~--------l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 489 SNNQI------------------------------GSVDPSG--------LKNMRNLTTLDLQN-NDLQQIPPILGNMTN 529 (565)
T ss_pred ccccc------------------------------cccChHH--------hhhhhhcceeccCC-CchhhCChhhccccc
Confidence 33322 2222210 01344555555555 456666666666666
Q ss_pred CCeEeccCCCC
Q 048826 661 LTSLYLLDCPK 671 (725)
Q Consensus 661 L~~L~l~~c~~ 671 (725)
|++|++.++|.
T Consensus 530 L~hLeL~gNpf 540 (565)
T KOG0472|consen 530 LRHLELDGNPF 540 (565)
T ss_pred eeEEEecCCcc
Confidence 66666666554
No 4
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=5.2e-26 Score=241.51 Aligned_cols=444 Identities=20% Similarity=0.231 Sum_probs=281.9
Q ss_pred cccCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCC
Q 048826 23 LDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGN 101 (725)
Q Consensus 23 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 101 (725)
++..+...+|++|+|+++....+|..+.. +.+|+.|+++.+ .+..+|. .+++.+|++|.|.++. ++..|..+
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~~it~--l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~--- 110 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPIQITL--LSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASI--- 110 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCchhhh--HHHHhhcccchh-hHhhCchhhhhhhcchhheeccch-hhcCchhH---
Confidence 44555565688888888888888887765 788888888886 7888887 8888888888888776 77777654
Q ss_pred CCCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCc
Q 048826 102 DSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPA 181 (725)
Q Consensus 102 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~ 181 (725)
....+|+.|+++.. ++... +.-+..+..+..+..+++.++. .++... ++.+++..+..........-.
T Consensus 111 ---~~lknl~~LdlS~N-~f~~~-----Pl~i~~lt~~~~~~~s~N~~~~-~lg~~~--ik~~~l~~n~l~~~~~~~i~~ 178 (1081)
T KOG0618|consen 111 ---SELKNLQYLDLSFN-HFGPI-----PLVIEVLTAEEELAASNNEKIQ-RLGQTS--IKKLDLRLNVLGGSFLIDIYN 178 (1081)
T ss_pred ---Hhhhcccccccchh-ccCCC-----chhHHhhhHHHHHhhhcchhhh-hhcccc--chhhhhhhhhcccchhcchhh
Confidence 33667777777773 34333 3334556666666666653222 333322 444444443322111222222
Q ss_pred cc-EEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcE
Q 048826 182 LC-KLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKR 260 (725)
Q Consensus 182 L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 260 (725)
++ .|++.+|.... . ++.++..|+...|..+.. ..+-..-++|+.
T Consensus 179 l~~~ldLr~N~~~~-~-----------------------------dls~~~~l~~l~c~rn~l-----s~l~~~g~~l~~ 223 (1081)
T KOG0618|consen 179 LTHQLDLRYNEMEV-L-----------------------------DLSNLANLEVLHCERNQL-----SELEISGPSLTA 223 (1081)
T ss_pred hheeeecccchhhh-h-----------------------------hhhhccchhhhhhhhccc-----ceEEecCcchhe
Confidence 33 36666665441 1 122222233333322222 011123367777
Q ss_pred EEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC-CCCCCCCCc
Q 048826 261 LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP-EVALPSKLK 339 (725)
Q Consensus 261 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~ 339 (725)
|+...|+..+. .....|.+|+++++++++. ..+|+++..+.+|+.+++.+|.. +.++ ......+|+
T Consensus 224 L~a~~n~l~~~-----------~~~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~ 290 (1081)
T KOG0618|consen 224 LYADHNPLTTL-----------DVHPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLV 290 (1081)
T ss_pred eeeccCcceee-----------ccccccccceeeecchhhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHH
Confidence 77777654422 1123458999999999887 57789999999999999998864 5554 344477889
Q ss_pred eEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCC
Q 048826 340 KIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSL 419 (725)
Q Consensus 340 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 419 (725)
.|.+..|+ ++.++.... ...+|++|++..+ .+..++...+. .+. ..
T Consensus 291 ~l~~~~ne-l~yip~~le--~~~sL~tLdL~~N-~L~~lp~~~l~----v~~--------------------------~~ 336 (1081)
T KOG0618|consen 291 SLSAAYNE-LEYIPPFLE--GLKSLRTLDLQSN-NLPSLPDNFLA----VLN--------------------------AS 336 (1081)
T ss_pred HHHhhhhh-hhhCCCccc--ccceeeeeeehhc-cccccchHHHh----hhh--------------------------HH
Confidence 99888887 777776643 2478889988877 33333331000 000 00
Q ss_pred CCeEEEeeCCCcccc--ccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccccc
Q 048826 420 LEHLHIESCPSLTRI--FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG 497 (725)
Q Consensus 420 L~~L~l~~~~~l~~l--~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 497 (725)
++.++.+. ..+..+ +....+ +.|+.|++.+|...+...+.+.++++|+.|++++ +.+.++|..
T Consensus 337 l~~ln~s~-n~l~~lp~~~e~~~-------------~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas 401 (1081)
T KOG0618|consen 337 LNTLNVSS-NKLSTLPSYEENNH-------------AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPAS 401 (1081)
T ss_pred HHHHhhhh-ccccccccccchhh-------------HHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHH
Confidence 11111111 111110 222222 2489999999999888888899999999999999 567767654
Q ss_pred -ccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCc-ccc
Q 048826 498 -LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLP-TNL 575 (725)
Q Consensus 498 -~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~L 575 (725)
+.+++.|++|++++ +.++.+|.....++.|++|...+|. +..+| .+..++.|+.+|++.|.--...-....+ ++|
T Consensus 402 ~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L 478 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL 478 (1081)
T ss_pred HHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence 56789999999999 5788888888889999999988887 55777 7888999999999988422221122333 899
Q ss_pred cceecccchh
Q 048826 576 HSLWIEDNME 585 (725)
Q Consensus 576 ~~L~l~~n~~ 585 (725)
++||+++|..
T Consensus 479 kyLdlSGN~~ 488 (1081)
T KOG0618|consen 479 KYLDLSGNTR 488 (1081)
T ss_pred ceeeccCCcc
Confidence 9999999964
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.3e-24 Score=216.29 Aligned_cols=223 Identities=16% Similarity=0.166 Sum_probs=152.0
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++|+.|+|..|.+...-.-.|..+++|+.|.+..| .+..+-+ .+..+.++++|++..|+....-..++..+.+|+.|+
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 35888888887655444566778888888888874 3444433 355688888888888655444445667778888888
Q ss_pred eccccCccccccccCCCCCcceeecCCCCCCCCcccC--CCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEED--GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
+++|.+...-++.+..+++|+.|++++| .+..++.. ..+..|++|.|+.|..- .+.+ ..|..+++|++|++++
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~--~l~e--~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSID--HLAE--GAFVGLSSLHKLDLRS 374 (873)
T ss_pred cchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchH--HHHh--hHHHHhhhhhhhcCcC
Confidence 8888876666777888888888888888 34444332 22478888888888653 3333 5677888999999887
Q ss_pred CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCCCcccCCCCC-cccccEEE
Q 048826 611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKGL-PSSLLQLH 688 (725)
Q Consensus 611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~ 688 (725)
+ ...-.+.+..+ .|..+++|+.|++.+ ++++.|+. ++..+++|+.|++.+++ +.++....+ +-.|++|.
T Consensus 375 N-~ls~~IEDaa~------~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv 445 (873)
T KOG4194|consen 375 N-ELSWCIEDAAV------AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELV 445 (873)
T ss_pred C-eEEEEEecchh------hhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhh
Confidence 3 22222222211 234688999999998 66888886 56788999999998854 455544433 23566665
Q ss_pred ecC
Q 048826 689 IYR 691 (725)
Q Consensus 689 l~~ 691 (725)
+..
T Consensus 446 ~nS 448 (873)
T KOG4194|consen 446 MNS 448 (873)
T ss_pred hcc
Confidence 544
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.3e-21 Score=233.03 Aligned_cols=313 Identities=24% Similarity=0.327 Sum_probs=159.2
Q ss_pred CcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeec
Q 048826 315 LREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILN 394 (725)
Q Consensus 315 L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 394 (725)
|+.|.+.+++ ++.+|....+.+|+.|++.++. ++.++... ..+++|+.|+++++..++.++.....++|+.|++.+
T Consensus 591 Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCC-CCCCCCcCCccCCcEEECcCcc-cccccccc--ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecC
Confidence 4444444432 3333333334444444444443 33333322 122444444444444444444434444455555555
Q ss_pred CCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhh
Q 048826 395 CDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERL 474 (725)
Q Consensus 395 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 474 (725)
|..+..++.. +. ..++|+.|++++|..++. ++...- .++|+.|++++|.....+|..
T Consensus 667 c~~L~~lp~s--i~-------~L~~L~~L~L~~c~~L~~-Lp~~i~------------l~sL~~L~Lsgc~~L~~~p~~- 723 (1153)
T PLN03210 667 CSSLVELPSS--IQ-------YLNKLEDLDMSRCENLEI-LPTGIN------------LKSLYRLNLSGCSRLKSFPDI- 723 (1153)
T ss_pred CCCccccchh--hh-------ccCCCCEEeCCCCCCcCc-cCCcCC------------CCCCCEEeCCCCCCccccccc-
Confidence 4444433311 00 112355555555554444 221110 023555555555544443321
Q ss_pred cCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccc-------cCCCCcCcCcCceeeeccccCccccccccC
Q 048826 475 DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLES-------FPEGGLLCAKLTRLTILDCKRLEALPKGLH 547 (725)
Q Consensus 475 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 547 (725)
..+|+.|+++++ .+..+|..+ .+++|++|.+.++..... .+.....+++|+.|++++|+....+|..+.
T Consensus 724 --~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 724 --STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred --cCCcCeeecCCC-ccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 235555666553 244454433 355555555554321100 011122235666777776666666666666
Q ss_pred CCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCccccc
Q 048826 548 NLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRL 627 (725)
Q Consensus 548 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~ 627 (725)
++++|+.|++++|..+..+|....+++|+.|++++|..+.. + ....++|+.|++++ +.+..+|..+.
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-~------p~~~~nL~~L~Ls~--n~i~~iP~si~---- 866 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-F------PDISTNISDLNLSR--TGIEEVPWWIE---- 866 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-c------cccccccCEeECCC--CCCccChHHHh----
Confidence 67777777777666666555544556677777776654421 1 11235677777766 44555665543
Q ss_pred CcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccC
Q 048826 628 GTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFP 676 (725)
Q Consensus 628 ~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 676 (725)
.+++|+.|++++|+++..+|..+..+++|+.+++++|+.++.++
T Consensus 867 -----~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 867 -----KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -----cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 46777777777777777777666677777777777777776543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-23 Score=212.72 Aligned_cols=318 Identities=16% Similarity=0.181 Sum_probs=158.5
Q ss_pred CCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--CC
Q 048826 256 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VA 333 (725)
Q Consensus 256 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~ 333 (725)
.+|++|+|.+ +.++.+..+ .++.+ +.|+.|||+.|.+...-...+..-.++++|+|++|. ++.+.. +.
T Consensus 125 ghl~~L~L~~-N~I~sv~se----~L~~l----~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~ 194 (873)
T KOG4194|consen 125 GHLEKLDLRH-NLISSVTSE----ELSAL----PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFD 194 (873)
T ss_pred cceeEEeeec-cccccccHH----HHHhH----hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-cccccccccc
Confidence 4566666666 345554443 24444 666777777666543333345555667777777654 444432 33
Q ss_pred CCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCc
Q 048826 334 LPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSR 413 (725)
Q Consensus 334 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 413 (725)
.+.+|..|.++.|. +..+|...+ ..++.|+.|++..|. ++.+. -+.+.+
T Consensus 195 ~lnsL~tlkLsrNr-ittLp~r~F-k~L~~L~~LdLnrN~-irive---------~ltFqg------------------- 243 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNR-ITTLPQRSF-KRLPKLESLDLNRNR-IRIVE---------GLTFQG------------------- 243 (873)
T ss_pred ccchheeeecccCc-ccccCHHHh-hhcchhhhhhccccc-eeeeh---------hhhhcC-------------------
Confidence 35566666666665 444443322 124556666655442 11000 000001
Q ss_pred ccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccc
Q 048826 414 RYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKI 493 (725)
Q Consensus 414 ~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 493 (725)
+ ++|+.|.+..|++...--..|-.+.++++|+++.|.....
T Consensus 244 --------------------------L-------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 244 --------------------------L-------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred --------------------------c-------------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 1 1244444444444333333444455555555555332222
Q ss_pred ccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCC--CCCcccCCC
Q 048826 494 LPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGE--LPSLEEDGL 571 (725)
Q Consensus 494 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--l~~~~~~~~ 571 (725)
-..++.+++.|+.|++++|..-+.-+..+.-+++|++|++++|....--+..+..+..|++|.++.|.. +....+.+
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~- 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG- 363 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-
Confidence 223344555555555555444344444455555666666666553333333455556666666666521 11111222
Q ss_pred cccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc
Q 048826 572 PTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL 651 (725)
Q Consensus 572 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 651 (725)
+++|++|||+.|...+ .+.+....+.++++|++|.+.+ +.+..+|.-. |..++.||+|++.+|.....-
T Consensus 364 lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~g--Nqlk~I~krA--------fsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTG--NQLKSIPKRA--------FSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred hhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecC--ceeeecchhh--------hccCcccceecCCCCcceeec
Confidence 2666666666665433 2222233456677777777776 5666666543 346777777777775544333
Q ss_pred cccccCCcCCCeEec
Q 048826 652 SSSIVDLQNLTSLYL 666 (725)
Q Consensus 652 ~~~~~~~~~L~~L~l 666 (725)
+.+|..+ +|++|-+
T Consensus 433 ~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 433 PNAFEPM-ELKELVM 446 (873)
T ss_pred ccccccc-hhhhhhh
Confidence 4455555 5666543
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.9e-21 Score=225.41 Aligned_cols=275 Identities=20% Similarity=0.282 Sum_probs=172.8
Q ss_pred ccCCCCCCcceEEEeccCC-------CCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccc
Q 048826 24 DMLKPHKNLKQFCISGYGG-------TKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGS 96 (725)
Q Consensus 24 ~~l~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~ 96 (725)
++|+.+++|+.|.+..... ..+|..+.. --.+|+.|++.++ .++.+|.--.+.+|+.|++.++. ++.++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~-lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY-LPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhh-cCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccccc
Confidence 3678888899888865431 123433322 1246888888886 67888873367888888888876 777664
Q ss_pred cccCCCCCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCC---CCcceeeeeccChhh-
Q 048826 97 EFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEH---LPALEMLAIEKCEEL- 172 (725)
Q Consensus 97 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~~l- 172 (725)
.. ..+++|+.|+++++..++.. +.+..+++|++|++++|..+. .+|.. +++|+.|++++|..+
T Consensus 629 ~~------~~l~~Lk~L~Ls~~~~l~~i------p~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 629 GV------HSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred cc------ccCCCCCEEECCCCCCcCcC------CccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcC
Confidence 43 34788888888887666553 345668888888888887775 66754 467888888888755
Q ss_pred -hhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhh
Q 048826 173 -LASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNEL 251 (725)
Q Consensus 173 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 251 (725)
.+....+++|+.|++++|.... .+|....+|+.|.+.+..- ...+..
T Consensus 696 ~Lp~~i~l~sL~~L~Lsgc~~L~---------------------------~~p~~~~nL~~L~L~~n~i----~~lP~~- 743 (1153)
T PLN03210 696 ILPTGINLKSLYRLNLSGCSRLK---------------------------SFPDISTNISWLDLDETAI----EEFPSN- 743 (1153)
T ss_pred ccCCcCCCCCCCEEeCCCCCCcc---------------------------ccccccCCcCeeecCCCcc----cccccc-
Confidence 1222267888888888886432 1222245666666655431 112222
Q ss_pred hhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC
Q 048826 252 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE 331 (725)
Q Consensus 252 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 331 (725)
..+++|+.|.+.++... .++.... .........+++|+.|++++|.....+|..++++++|+.|++++|..++.+|.
T Consensus 744 -~~l~~L~~L~l~~~~~~-~l~~~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 744 -LRLENLDELILCEMKSE-KLWERVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred -ccccccccccccccchh-hcccccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 24677777777664321 1111000 00000112346888888888887778888888888888888888877666665
Q ss_pred CCCCCCCceEEeeccCcc
Q 048826 332 VALPSKLKKIQFRECDAL 349 (725)
Q Consensus 332 ~~~l~~L~~L~l~~~~~~ 349 (725)
...+++|+.|++++|..+
T Consensus 821 ~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 821 GINLESLESLDLSGCSRL 838 (1153)
T ss_pred CCCccccCEEECCCCCcc
Confidence 445556666665555433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.6e-23 Score=210.15 Aligned_cols=224 Identities=18% Similarity=0.188 Sum_probs=171.8
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCC-ccccCCCCcCcCcCceeeec
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGN-LESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~ 534 (725)
|-.|+|++| .++.+|+....+.+|++|++++|....---.-+..+++|+.|++++.+. +..+|..+-.+.+|..+|++
T Consensus 152 LLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 677888886 5667777888888999999988653221112233467888888887543 45688888888899999998
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCC
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD 614 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 614 (725)
.|. +..+|..+..+++|+.|++|+|..-+--...+...+|++|+++.|+... .|..+.++++|++|.+.++...
T Consensus 231 ~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 231 ENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCccc
Confidence 886 6778888899999999999998432222234455889999999997542 2246788899999999886667
Q ss_pred CccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCC-CCcccccEEEecCCc
Q 048826 615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCP 693 (725)
Q Consensus 615 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 693 (725)
.+.+|++++ .+.+|+.+...+ ++++-.|.++..|+.|+.|.+++ +.+-.+|+. .+++.|+.|+++..|
T Consensus 305 FeGiPSGIG---------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 305 FEGIPSGIG---------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccCCccchh---------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCc
Confidence 888998886 678889888888 67999999888999999999987 566677765 457889999999999
Q ss_pred hhHH
Q 048826 694 LIEE 697 (725)
Q Consensus 694 ~l~~ 697 (725)
+|.-
T Consensus 374 nLVM 377 (1255)
T KOG0444|consen 374 NLVM 377 (1255)
T ss_pred CccC
Confidence 8863
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=9.2e-23 Score=217.03 Aligned_cols=419 Identities=20% Similarity=0.221 Sum_probs=247.8
Q ss_pred cCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcC
Q 048826 177 TCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDIC 256 (725)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 256 (725)
.+.-+|+.|+++++....+. .....+..|.-.+++.+.. ...+ .-..++.
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp----------------------------~~it~l~~L~~ln~s~n~i-~~vp-~s~~~~~ 91 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFP----------------------------IQITLLSHLRQLNLSRNYI-RSVP-SSCSNMR 91 (1081)
T ss_pred hheeeeEEeeccccccccCC----------------------------chhhhHHHHhhcccchhhH-hhCc-hhhhhhh
Confidence 33444888999888654432 2334444444444444433 2233 3347788
Q ss_pred CCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCC
Q 048826 257 SLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS 336 (725)
Q Consensus 257 ~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~ 336 (725)
+|+.+.|.+ +.+..+|.+ +..+ .+|++|++++|.+ +.+|..+..+..+..+..++|..+..++...
T Consensus 92 ~l~~lnL~~-n~l~~lP~~-----~~~l----knl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--- 157 (1081)
T KOG0618|consen 92 NLQYLNLKN-NRLQSLPAS-----ISEL----KNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS--- 157 (1081)
T ss_pred cchhheecc-chhhcCchh-----HHhh----hcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc---
Confidence 888888886 677777754 5666 7888999998887 6788878888888888888874444444333
Q ss_pred CCceEEeeccCcccccccccccCCCCcccE-EEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCccc
Q 048826 337 KLKKIQFRECDALKLLPEAWMSDTNSSLEI-LSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRY 415 (725)
Q Consensus 337 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 415 (725)
.+.+++..+.....+.... ..+++ |++.++... .+++..+..++.+....+ .......
T Consensus 158 -ik~~~l~~n~l~~~~~~~i-----~~l~~~ldLr~N~~~-------------~~dls~~~~l~~l~c~rn--~ls~l~~ 216 (1081)
T KOG0618|consen 158 -IKKLDLRLNVLGGSFLIDI-----YNLTHQLDLRYNEME-------------VLDLSNLANLEVLHCERN--QLSELEI 216 (1081)
T ss_pred -chhhhhhhhhcccchhcch-----hhhheeeecccchhh-------------hhhhhhccchhhhhhhhc--ccceEEe
Confidence 5566666555444444332 22333 677666422 233333333333321110 1001122
Q ss_pred ccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc
Q 048826 416 TSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP 495 (725)
Q Consensus 416 ~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~ 495 (725)
..++++.|+..+++-.+. .....|.+|+.++++.+.. ..+|.+++.+.+|+.++..+| .+..+|
T Consensus 217 ~g~~l~~L~a~~n~l~~~--------------~~~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N-~l~~lp 280 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTL--------------DVHPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHN-RLVALP 280 (1081)
T ss_pred cCcchheeeeccCcceee--------------ccccccccceeeecchhhh-hcchHHHHhcccceEecccch-hHHhhH
Confidence 234466666655443321 1222345799999999754 445688889999999999884 457777
Q ss_pred ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccccc-CCCC-CcceeecCCCCCCCCcc--cCCC
Q 048826 496 SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGL-HNLT-SLQQLTIGKGGELPSLE--EDGL 571 (725)
Q Consensus 496 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~-~L~~L~l~~~~~l~~~~--~~~~ 571 (725)
..+...++|+.|.+.+ +.++.+|.....+..|++|++..|. +.++|..+ .... +|..|..+.+. +...+ ....
T Consensus 281 ~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENN 357 (1081)
T ss_pred HHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcc-ccccccccchh
Confidence 7777888888888887 4677788777778888999998886 55565532 2222 24555555442 11111 1222
Q ss_pred cccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc
Q 048826 572 PTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL 651 (725)
Q Consensus 572 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 651 (725)
.+.|+.|.+.+|......++. +.++.+||.|++++ +.+..||...- ..++.|++|++++ ++++.+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsy--NrL~~fpas~~--------~kle~LeeL~LSG-NkL~~L 422 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSY--NRLNSFPASKL--------RKLEELEELNLSG-NKLTTL 422 (1081)
T ss_pred hHHHHHHHHhcCcccccchhh----hccccceeeeeecc--cccccCCHHHH--------hchHHhHHHhccc-chhhhh
Confidence 356666666666555444433 55666666666666 55555665442 2556666666666 445544
Q ss_pred cc----------------------cccCCcCCCeEeccCCCCCcccC-CCCCc-ccccEEEecCCchh
Q 048826 652 SS----------------------SIVDLQNLTSLYLLDCPKLRYFP-EKGLP-SSLLQLHIYRCPLI 695 (725)
Q Consensus 652 ~~----------------------~~~~~~~L~~L~l~~c~~l~~l~-~~~~~-~~L~~L~l~~c~~l 695 (725)
|. .+..++.|+.+|++. +.++++. ....+ |.|++|++.+++.+
T Consensus 423 p~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCccc
Confidence 43 445566677777765 4455533 22345 67888888877753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.9e-24 Score=206.63 Aligned_cols=450 Identities=21% Similarity=0.224 Sum_probs=261.7
Q ss_pred ccCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCC
Q 048826 24 DMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGND 102 (725)
Q Consensus 24 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 102 (725)
+.+....-|.+|++.++...++|..++. +.+++.|+.+.+ ++..+|. ++.+++|++|+++++. +.+++++++.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~--l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~-- 135 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGE--LEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGR-- 135 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHH--HHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-eeecCchHHH--
Confidence 4667778889999999999999999987 889999999997 8999998 9999999999999987 7777766532
Q ss_pred CCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCC---CCcceeeeeccCh--hhhhhcc
Q 048826 103 SSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEH---LPALEMLAIEKCE--ELLASIT 177 (725)
Q Consensus 103 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~--~l~~~~~ 177 (725)
+..|+.|+..+. +.... +.++..+.+|..+.+.++ +++ .+|.. +..|++++...+. .++..++
T Consensus 136 ----~~~l~dl~~~~N-~i~sl-----p~~~~~~~~l~~l~~~~n-~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 136 ----LLDLEDLDATNN-QISSL-----PEDMVNLSKLSKLDLEGN-KLK-ALPENHIAMKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred ----Hhhhhhhhcccc-ccccC-----chHHHHHHHHHHhhcccc-chh-hCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence 455666665552 33333 555566777777777766 554 44432 3456666554433 2356677
Q ss_pred CCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCC
Q 048826 178 CLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICS 257 (725)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 257 (725)
.+.+|..|++..|.+...+... .++.|+++.+... .+...+....+.+++
T Consensus 204 ~l~~L~~LyL~~Nki~~lPef~--------------------------gcs~L~Elh~g~N----~i~~lpae~~~~L~~ 253 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLPEFP--------------------------GCSLLKELHVGEN----QIEMLPAEHLKHLNS 253 (565)
T ss_pred chhhhHHHHhhhcccccCCCCC--------------------------ccHHHHHHHhccc----HHHhhHHHHhccccc
Confidence 7888888888877655533221 2334444444322 224466777789999
Q ss_pred CcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC----CCC
Q 048826 258 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP----EVA 333 (725)
Q Consensus 258 L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~ 333 (725)
+.+||+++ ++++..|.+ +.-+ .+|++||+++|.+ +.+|..++++ .|+.|.+.||+ ++.+. ..+
T Consensus 254 l~vLDLRd-Nklke~Pde-----~clL----rsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~g 320 (565)
T KOG0472|consen 254 LLVLDLRD-NKLKEVPDE-----ICLL----RSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKG 320 (565)
T ss_pred ceeeeccc-cccccCchH-----HHHh----hhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCc-hHHHHHHHHccc
Confidence 99999999 689998876 3344 7899999999887 6888899999 99999999997 32221 111
Q ss_pred ---CCCCCceEE----eeccCcc----ccccccc--ccCCCCcccEEEeeccCCccccccccc----ccccceEEeecCC
Q 048826 334 ---LPSKLKKIQ----FRECDAL----KLLPEAW--MSDTNSSLEILSIWVCHSLTYLAGVQL----PRSLKRLVILNCD 396 (725)
Q Consensus 334 ---~l~~L~~L~----l~~~~~~----~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~----~~~L~~L~l~~~~ 396 (725)
.++.|+.-. ++....- .+.+... ......+.+.|++++- .++.+|...+ -.-+...++++..
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccch
Confidence 133333200 0100000 0001000 0112245677776654 4445544311 1113444444422
Q ss_pred CccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcC
Q 048826 397 NIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDN 476 (725)
Q Consensus 397 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 476 (725)
+..++ .+.... ..-...+.+++ +..+ |... .+..+ ++|..|++++| ....+|..++.
T Consensus 400 -L~elP--k~L~~l------kelvT~l~lsn--n~is-fv~~---------~l~~l-~kLt~L~L~NN-~Ln~LP~e~~~ 456 (565)
T KOG0472|consen 400 -LCELP--KRLVEL------KELVTDLVLSN--NKIS-FVPL---------ELSQL-QKLTFLDLSNN-LLNDLPEEMGS 456 (565)
T ss_pred -Hhhhh--hhhHHH------HHHHHHHHhhc--Cccc-cchH---------HHHhh-hcceeeecccc-hhhhcchhhhh
Confidence 22222 000000 00000011110 0000 1100 01111 34666666664 45555666666
Q ss_pred CCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCccccccccCCCCCccee
Q 048826 477 NTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL 555 (725)
Q Consensus 477 l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 555 (725)
+..|+.|+++.| .+..+|.++..+..++.+-.++ ..++.++. ++..|.+|..||+.+|. +..+|..+++|.+|++|
T Consensus 457 lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 457 LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHL 533 (565)
T ss_pred hhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEE
Confidence 666666666663 5555666555555555554444 33344433 35666666666666665 45566666666666666
Q ss_pred ecCCCC
Q 048826 556 TIGKGG 561 (725)
Q Consensus 556 ~l~~~~ 561 (725)
.+++|+
T Consensus 534 eL~gNp 539 (565)
T KOG0472|consen 534 ELDGNP 539 (565)
T ss_pred EecCCc
Confidence 666663
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=7.1e-22 Score=200.84 Aligned_cols=179 Identities=22% Similarity=0.312 Sum_probs=123.1
Q ss_pred CccEEEEecccch-hhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKL-ESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+|+.|++++.+.+ ..+|.++..+.+|..+|++. +.+..+|+++.++++|+.|++++ +.++.+........+|+.|++
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNL 275 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcc
Confidence 4677777766543 45677777788888888887 56777788888888888888888 455666555555667888888
Q ss_pred ccccCccccccccCCCCCcceeecCCCCC-CCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGE-LPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
+.|. ++.+|..+..++.|+.|.+.+|.- ...+|. .+.+.+|+++...+|... -.|..+..|..|+.|.+..
T Consensus 276 SrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-----lVPEglcRC~kL~kL~L~~- 348 (1255)
T KOG0444|consen 276 SRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-----LVPEGLCRCVKLQKLKLDH- 348 (1255)
T ss_pred ccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-----cCchhhhhhHHHHHhcccc-
Confidence 8876 667788888888888888777731 222332 444567777777766432 1234567777777777776
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS 652 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 652 (725)
+.+..+|..+. .++.|+.|++.+|+++..-|
T Consensus 349 -NrLiTLPeaIH---------lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 349 -NRLITLPEAIH---------LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -cceeechhhhh---------hcCCcceeeccCCcCccCCC
Confidence 66777777763 67778888888777776554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.6e-13 Score=152.05 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=97.0
Q ss_pred CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPC 109 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 109 (725)
.+-..|+++++....+|..+. .+|+.|.+.+| .++.+|.. +++|++|++++|. ++.+|.. +++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N~-LtsLP~l---------p~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGNQ-LTSLPVL---------PPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh----cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCCc-cCcccCc---------ccc
Confidence 567789999999999997663 48999999997 88889873 6899999999986 8888742 678
Q ss_pred cceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccC-CCcccEEEec
Q 048826 110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITC-LPALCKLKIY 188 (725)
Q Consensus 110 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~-~~~L~~L~l~ 188 (725)
|++|++.++ .+.... ..+++|+.|++++| +++ .+|..+++|+.|++++|... .++. .+.|+.|.++
T Consensus 264 L~~L~Ls~N-~L~~Lp--------~lp~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N~L~--~Lp~lp~~L~~L~Ls 330 (788)
T PRK15387 264 LLELSIFSN-PLTHLP--------ALPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLA--SLPALPSELCKLWAY 330 (788)
T ss_pred cceeeccCC-chhhhh--------hchhhcCEEECcCC-ccc-cccccccccceeECCCCccc--cCCCCcccccccccc
Confidence 999999885 344431 23467888999887 666 77777778888888887432 1211 2356666666
Q ss_pred CCC
Q 048826 189 GCK 191 (725)
Q Consensus 189 ~~~ 191 (725)
+|.
T Consensus 331 ~N~ 333 (788)
T PRK15387 331 NNQ 333 (788)
T ss_pred cCc
Confidence 665
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2.2e-13 Score=150.94 Aligned_cols=72 Identities=24% Similarity=0.287 Sum_probs=41.6
Q ss_pred CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826 289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS 368 (725)
Q Consensus 289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 368 (725)
.+-..|+++++.+ +.+|..+. ++|+.|++.+|. ++.+|. .+++|++|++++|. ++.+|.. .++|++|+
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N~-Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCCc-CCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 3456777777755 35666554 367777777764 555543 25667777776663 4444432 13455555
Q ss_pred eecc
Q 048826 369 IWVC 372 (725)
Q Consensus 369 l~~~ 372 (725)
+.+|
T Consensus 269 Ls~N 272 (788)
T PRK15387 269 IFSN 272 (788)
T ss_pred ccCC
Confidence 5544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=1.8e-13 Score=133.26 Aligned_cols=288 Identities=16% Similarity=0.107 Sum_probs=152.4
Q ss_pred CCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeeccc
Q 048826 41 GGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDM 118 (725)
Q Consensus 41 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~ 118 (725)
+...+|..+- ..-+.++|..| .++.+|+ |+.+++||+|+|++|. |+.|.++.|. ++++|-+|-+.+.
T Consensus 57 GL~eVP~~LP----~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~-----GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 57 GLTEVPANLP----PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFK-----GLASLLSLVLYGN 125 (498)
T ss_pred CcccCcccCC----CcceEEEeccC-CcccCChhhccchhhhceecccccc-hhhcChHhhh-----hhHhhhHHHhhcC
Confidence 3445565553 36788899887 8999988 9999999999999887 8888776643 3677777777776
Q ss_pred ccccccccCCCCCC-CCCCCCccEEEeccCcCcccccC----CCCCcceeeeeccChhh---hhhccCCCcccEEEecCC
Q 048826 119 EEWEDWIPHGSSQG-VEGFPKLRELHVIRCSKLQGTFP----EHLPALEMLAIEKCEEL---LASITCLPALCKLKIYGC 190 (725)
Q Consensus 119 ~~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~ 190 (725)
+++++. +.+ |+++..|+.|.+.-| ++. .++ ..++++..|.+.++..- ...+..+..++.+.+..+
T Consensus 126 NkI~~l-----~k~~F~gL~slqrLllNan-~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 126 NKITDL-----PKGAFGGLSSLQRLLLNAN-HIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred Cchhhh-----hhhHhhhHHHHHHHhcChh-hhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 677776 333 477888888877655 332 222 23555666666555422 123444555555555544
Q ss_pred CceeEcccccccCCCCcccccCCCCccc-ccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCc
Q 048826 191 KKVVWRSSTDHLGSQNSVVCGDTSNQVF-LTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKL 269 (725)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 269 (725)
.....-. -.+.. +....+..++..+-..-..+...+.-+.-...+......+..--...|.-.
T Consensus 199 p~icdCn----------------L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d 262 (498)
T KOG4237|consen 199 PFICDCN----------------LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPD 262 (498)
T ss_pred ccccccc----------------cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcC
Confidence 3211000 00000 111112334444333222222222200011111111111111111122111
Q ss_pred ccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--CCCCCCCceEEeeccC
Q 048826 270 QSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQFRECD 347 (725)
Q Consensus 270 ~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 347 (725)
..-|. ..|..+ ++|+.|+|++|.+...-+.+|.....++.|.|.+|. +..+.. +..+.+|++|++.+|.
T Consensus 263 ~~cP~----~cf~~L----~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 263 SICPA----KCFKKL----PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred CcChH----HHHhhc----ccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe
Confidence 11111 224444 677777777777766666677777777777777764 444433 2236677777777776
Q ss_pred cccccccccccCCCCcccEEEeeccC
Q 048826 348 ALKLLPEAWMSDTNSSLEILSIWVCH 373 (725)
Q Consensus 348 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 373 (725)
.....|..+. ...+|.+|.+..|+
T Consensus 334 it~~~~~aF~--~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 334 ITTVAPGAFQ--TLFSLSTLNLLSNP 357 (498)
T ss_pred eEEEeccccc--ccceeeeeehccCc
Confidence 4444454442 33566667666554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=5.4e-12 Score=141.01 Aligned_cols=244 Identities=17% Similarity=0.231 Sum_probs=147.5
Q ss_pred CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPC 109 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 109 (725)
.+...|++++++...+|..+. ++|+.|++++| .++.+|. ...++|++|++++|. ++.+|..+ ++.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N-~LtsLP~-~l~~nL~~L~Ls~N~-LtsLP~~l--------~~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP----EQITTLILDNN-ELKSLPE-NLQGNIKTLYANSNQ-LTSIPATL--------PDT 242 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc----cCCcEEEecCC-CCCcCCh-hhccCCCEEECCCCc-cccCChhh--------hcc
Confidence 577899999999999987663 57999999998 7889987 123699999999986 88887643 457
Q ss_pred cceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCC-cceeeeeccChhh--hhhccCCCcccEEE
Q 048826 110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLP-ALEMLAIEKCEEL--LASITCLPALCKLK 186 (725)
Q Consensus 110 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~-~L~~L~l~~~~~l--~~~~~~~~~L~~L~ 186 (725)
|+.|+++++ ++... +..+ .++|+.|+++++ +++ .+|..++ +|+.|++++|..- +..+ .++|+.|+
T Consensus 243 L~~L~Ls~N-~L~~L-----P~~l--~s~L~~L~Ls~N-~L~-~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~ 310 (754)
T PRK15370 243 IQEMELSIN-RITEL-----PERL--PSALQSLDLFHN-KIS-CLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLN 310 (754)
T ss_pred ccEEECcCC-ccCcC-----ChhH--hCCCCEEECcCC-ccC-ccccccCCCCcEEECCCCccccCcccc--hhhHHHHH
Confidence 999999985 44443 2222 347899999866 776 6676543 6777777665321 1001 12455555
Q ss_pred ecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccC
Q 048826 187 IYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSC 266 (725)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 266 (725)
+++|.... .+.. ..++|+.|++++|
T Consensus 311 Ls~N~Lt~----------------------------------------------------LP~~---l~~sL~~L~Ls~N 335 (754)
T PRK15370 311 VQSNSLTA----------------------------------------------------LPET---LPPGLKTLEAGEN 335 (754)
T ss_pred hcCCcccc----------------------------------------------------CCcc---ccccceeccccCC
Confidence 55543221 1111 1245666666664
Q ss_pred CCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeecc
Q 048826 267 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFREC 346 (725)
Q Consensus 267 ~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~ 346 (725)
.++.+|.. ++++|+.|++++|.+ ..+|..+ .++|++|++++|. ++.+|.. ...+|+.|++++|
T Consensus 336 -~Lt~LP~~-----------l~~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~-l~~sL~~LdLs~N 398 (754)
T PRK15370 336 -ALTSLPAS-----------LPPELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNA-LTNLPEN-LPAALQIMQASRN 398 (754)
T ss_pred -ccccCChh-----------hcCcccEEECCCCCC-CcCChhh--cCCcCEEECCCCc-CCCCCHh-HHHHHHHHhhccC
Confidence 34444422 125677777777665 3455433 2467777777664 3444321 2345667777766
Q ss_pred Cccccccccccc--CCCCcccEEEeeccC
Q 048826 347 DALKLLPEAWMS--DTNSSLEILSIWVCH 373 (725)
Q Consensus 347 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 373 (725)
. +..+|..... ...+.+..|++.+|+
T Consensus 399 ~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 399 N-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred C-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 5 3444443211 123566777777765
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=1.5e-13 Score=118.30 Aligned_cols=159 Identities=23% Similarity=0.349 Sum_probs=128.5
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
.+++|.+++|+. ..+|+.+..+.+|+.|++++ +.++++|..+..++.|+.|+++- +.+..+|.+++.+|.|+.||+.
T Consensus 34 ~ITrLtLSHNKl-~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKL-TVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCce-eecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcc
Confidence 588889999854 45666788899999999988 67888999999999999999987 5678899999999999999999
Q ss_pred cccCc-cccccccCCCCCcceeecCCCCCCCCc-ccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCC
Q 048826 535 DCKRL-EALPKGLHNLTSLQQLTIGKGGELPSL-EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCD 612 (725)
Q Consensus 535 ~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 612 (725)
+|+.. ..+|..|..+..|+.|++++|+ .+.+ +..+.+++|+.|.+++|..++ .+..++.++.|++|+|.+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~-----lpkeig~lt~lrelhiqg-- 182 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLS-----LPKEIGDLTRLRELHIQG-- 182 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhh-----CcHHHHHHHHHHHHhccc--
Confidence 98744 4678888889999999999984 3333 346677899999999987653 235677888999999988
Q ss_pred CCCccCCCCCcc
Q 048826 613 DDMVSFPPEPED 624 (725)
Q Consensus 613 ~~~~~l~~~~~~ 624 (725)
+.+..+|++++.
T Consensus 183 nrl~vlppel~~ 194 (264)
T KOG0617|consen 183 NRLTVLPPELAN 194 (264)
T ss_pred ceeeecChhhhh
Confidence 677777776653
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=2.1e-13 Score=132.79 Aligned_cols=196 Identities=13% Similarity=0.115 Sum_probs=97.4
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+|++|+|++|.+...-..+|.....++.|.+.+| .+..+ ...+.++.+|+.|++++|+.....|..+..+.+|.+|.+
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 5666666666666666666666666666666663 33333 233455666666666665555555555666666666666
Q ss_pred ccccCcccc-ccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHH--hh------ccccccccCCCc
Q 048826 534 LDCKRLEAL-PKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSM--IE------RGRGFHRFSSLR 604 (725)
Q Consensus 534 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~------~~~~~~~l~~L~ 604 (725)
-.|+..-.- -.+++. .+.+.. ....+..+.+..++.+.+++...-...- ++ .+.....++-+.
T Consensus 354 ~~Np~~CnC~l~wl~~-------Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~ 425 (498)
T KOG4237|consen 354 LSNPFNCNCRLAWLGE-------WLRKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLD 425 (498)
T ss_pred ccCcccCccchHHHHH-------HHhhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhh
Confidence 655521100 000000 000001 1111223334455566665543211000 00 001111222222
Q ss_pred EEEeecCC-CCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCC
Q 048826 605 RLTIINCD-DDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPE 677 (725)
Q Consensus 605 ~L~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 677 (725)
. +..|. ..+..+|..+ +....++++.+ +.++.+|.+ .+.+| .++++++ .+..+..
T Consensus 426 t--VvRcSnk~lk~lp~~i-----------P~d~telyl~g-n~~~~vp~~--~~~~l-~~dls~n-~i~~Lsn 481 (498)
T KOG4237|consen 426 T--VVRCSNKLLKLLPRGI-----------PVDVTELYLDG-NAITSVPDE--LLRSL-LLDLSNN-RISSLSN 481 (498)
T ss_pred h--hHhhcccchhhcCCCC-----------CchhHHHhccc-chhcccCHH--HHhhh-hcccccC-ceehhhc
Confidence 2 22222 3466666654 56788889988 568888863 66677 7788774 3444443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=3.2e-11 Score=134.87 Aligned_cols=223 Identities=21% Similarity=0.295 Sum_probs=140.0
Q ss_pred CCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccccc
Q 048826 418 SLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG 497 (725)
Q Consensus 418 ~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 497 (725)
+.++.|+++++ +++. ++... +.+|+.|++++|.+. .+|..+. ++|+.|++++|. +..+|..
T Consensus 199 ~~L~~L~Ls~N-~Lts-LP~~l-------------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~-L~~LP~~ 259 (754)
T PRK15370 199 EQITTLILDNN-ELKS-LPENL-------------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINR-ITELPER 259 (754)
T ss_pred cCCcEEEecCC-CCCc-CChhh-------------ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCc-cCcCChh
Confidence 46777777763 4444 22111 125888888887654 4454332 468888888754 4566665
Q ss_pred ccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccc
Q 048826 498 LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHS 577 (725)
Q Consensus 498 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 577 (725)
+. ++|+.|++++| .+..+|..+. ++|+.|++++|. ++.+|..+. ++|+.|++++| .+..++. ..+++|+.
T Consensus 260 l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~ 329 (754)
T PRK15370 260 LP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSN-SLTALPE-TLPPGLKT 329 (754)
T ss_pred Hh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCC-ccccCCc-ccccccee
Confidence 53 57888888864 4556665443 478888888875 445665442 46788888887 3343432 23478888
Q ss_pred eecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccC
Q 048826 578 LWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVD 657 (725)
Q Consensus 578 L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~ 657 (725)
|++++|.... ++ ..+ .++|+.|++++| .+..+|.. .+++|+.|++++| .+..+|..+.
T Consensus 330 L~Ls~N~Lt~--LP---~~l--~~sL~~L~Ls~N--~L~~LP~~-----------lp~~L~~LdLs~N-~Lt~LP~~l~- 387 (754)
T PRK15370 330 LEAGENALTS--LP---ASL--PPELQVLDVSKN--QITVLPET-----------LPPTITTLDVSRN-ALTNLPENLP- 387 (754)
T ss_pred ccccCCcccc--CC---hhh--cCcccEEECCCC--CCCcCChh-----------hcCCcCEEECCCC-cCCCCCHhHH-
Confidence 8888885431 21 112 258888888883 44556653 3468888888885 5777775432
Q ss_pred CcCCCeEeccCCCCCcccCCCC-----CcccccEEEecCCc
Q 048826 658 LQNLTSLYLLDCPKLRYFPEKG-----LPSSLLQLHIYRCP 693 (725)
Q Consensus 658 ~~~L~~L~l~~c~~l~~l~~~~-----~~~~L~~L~l~~c~ 693 (725)
..|+.|++++| ++..+|... ..+.+..|++.++|
T Consensus 388 -~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 -AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 46888888884 566666531 13667888888877
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-12 Score=112.61 Aligned_cols=160 Identities=24% Similarity=0.376 Sum_probs=110.1
Q ss_pred hcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcc
Q 048826 474 LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQ 553 (725)
Q Consensus 474 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 553 (725)
+..+.+.+.|.+++ +.++.+|+.+..+.+|+.|++.+ +.++++|..+.++++|+.|++.-|+ +...|.+|+++|.|+
T Consensus 29 Lf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 33566788889999 67888899999999999999987 6789999999999999999998776 678899999999999
Q ss_pred eeecCCCCCCCC-ccc-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCccc
Q 048826 554 QLTIGKGGELPS-LEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTL 631 (725)
Q Consensus 554 ~L~l~~~~~l~~-~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~ 631 (725)
.||+.+|.--+. .+. ...+..|+.|.+++| ..+.+|.+++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dn------------------------------dfe~lp~dvg-------- 147 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDN------------------------------DFEILPPDVG-------- 147 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCC------------------------------CcccCChhhh--------
Confidence 999998842221 111 112244444444444 4445555543
Q ss_pred CCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCC
Q 048826 632 PLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPE 677 (725)
Q Consensus 632 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 677 (725)
.+++|+.|.+.+ +.+-.+|..+..+..|++|.|.+ +.++.+|+
T Consensus 148 -~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 148 -KLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred -hhcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 455556666665 34445565556666666666666 34444443
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.13 E-value=1.2e-12 Score=128.73 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=38.8
Q ss_pred CCcceEEEeccCCCCCCCC-cCCCCCCCccEEEEecCCCCCcCCC---CCCCCccceeeecCcccceeccccccCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPTW-LGDSSFSNLVILKFEDCGMCTTWPS---VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSST 105 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 105 (725)
-.||.|.++|+......+. .....++++++|.+.+|..+++-.- -..+++|++|++.+|..+++......+.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~---- 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE---- 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH----
Confidence 4555555555544332110 0112345555555555554443211 2345555555555555444433322221
Q ss_pred CCCCcceeeeccccccc
Q 048826 106 PFPCLETLRFEDMEEWE 122 (725)
Q Consensus 106 ~~~~L~~L~l~~~~~l~ 122 (725)
+|++|++|.+++|+...
T Consensus 214 gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQIS 230 (483)
T ss_pred hhhhHHHhhhccCchhh
Confidence 14555555555544443
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.10 E-value=1.6e-12 Score=127.93 Aligned_cols=285 Identities=19% Similarity=0.241 Sum_probs=202.1
Q ss_pred CCccEEEEecCCCCCcCC--C-CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCC
Q 048826 55 SNLVILKFEDCGMCTTWP--S-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQ 131 (725)
Q Consensus 55 ~~L~~L~l~~c~~l~~l~--~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 131 (725)
.-|+.|.+.||...+.=+ . ...+|++++|.+.+|..+++..-.-.+ ..+++|+.|.+..|+.+++.. .+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~----Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVS----LK 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHH----HH
Confidence 458999999997655443 3 578999999999999877665322112 338999999999999888765 34
Q ss_pred CC-CCCCCccEEEeccCcCccc----ccCCCCCcceeeeeccChhh-----hhhccCCCcccEEEecCCCceeEcccccc
Q 048826 132 GV-EGFPKLRELHVIRCSKLQG----TFPEHLPALEMLAIEKCEEL-----LASITCLPALCKLKIYGCKKVVWRSSTDH 201 (725)
Q Consensus 132 ~~-~~l~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 201 (725)
.+ .+|++|+++.++.|+.+++ .+......++.+...+|... ...-..++.+.++++.+|..++.....
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~-- 287 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW-- 287 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH--
Confidence 34 7899999999999998886 34445566888878888855 223455677888888888766644321
Q ss_pred cCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHH
Q 048826 202 LGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQ 281 (725)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l 281 (725)
.+......|+.|...++.+..+ .....+-....+|+.+.+..|..+++. .+
T Consensus 288 --------------------~i~~~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~-------~f 338 (483)
T KOG4341|consen 288 --------------------LIACGCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDR-------GF 338 (483)
T ss_pred --------------------HHhhhhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhh-------hh
Confidence 1122356677777777777555 233445567899999999999887663 35
Q ss_pred hhhhhccCCccEEEEecccCcc--ccccccCCCCCCcEEEeecCCCccccCC------CCCCCCCceEEeeccCcccccc
Q 048826 282 QQLCELSCRLEYLRLRYCKGLV--KLPQSSLSLSSLREIEIYKCSSLVSFPE------VALPSKLKKIQFRECDALKLLP 353 (725)
Q Consensus 282 ~~l~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~------~~~l~~L~~L~l~~~~~~~~~~ 353 (725)
..++.-.+.|+.|++.+|.... .+-..-.+++.|++|.+++|..+++-+. ......|..+.+++|+.+.+..
T Consensus 339 t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 339 TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 5666666899999999887644 2334445789999999999987766521 1236788999999998776544
Q ss_pred cccccCCCCcccEEEeeccCCccccc
Q 048826 354 EAWMSDTNSSLEILSIWVCHSLTYLA 379 (725)
Q Consensus 354 ~~~~~~~~~~L~~L~l~~~~~l~~~~ 379 (725)
.... ..++.|+.+++.+|..++.-+
T Consensus 419 Le~l-~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 419 LEHL-SICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred HHHH-hhCcccceeeeechhhhhhhh
Confidence 3322 245789999999987665443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=3e-11 Score=125.24 Aligned_cols=11 Identities=27% Similarity=0.069 Sum_probs=6.4
Q ss_pred cCCCeEeccCC
Q 048826 659 QNLTSLYLLDC 669 (725)
Q Consensus 659 ~~L~~L~l~~c 669 (725)
+.|+.|++++|
T Consensus 250 ~~L~~L~l~~n 260 (319)
T cd00116 250 ISLLTLSLSCN 260 (319)
T ss_pred CCceEEEccCC
Confidence 45666666554
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=5.1e-11 Score=123.54 Aligned_cols=211 Identities=19% Similarity=0.117 Sum_probs=120.7
Q ss_pred CccEEEEecccch------hhhhhhhcCCCCccEEEecCCCCcccccccccCCC---cccEEEeccCCCcc----ccCCC
Q 048826 455 SLKSLSVYGCSKL------ESIAERLDNNTSLEYINISNCENLKILPSGLHNLR---QLQEITIQRCGNLE----SFPEG 521 (725)
Q Consensus 455 ~L~~L~L~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~---~L~~L~l~~~~~~~----~~~~~ 521 (725)
++++++++++... ..++..+..+++|+.|++++|......+..+..+. +|++|++++|.... .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 4777777766544 23445566677888888887665443433333333 38888888765431 12222
Q ss_pred CcCc-CcCceeeeccccCcc----ccccccCCCCCcceeecCCCCCCCC----cc-cCCCcccccceecccchhhHHHHh
Q 048826 522 GLLC-AKLTRLTILDCKRLE----ALPKGLHNLTSLQQLTIGKGGELPS----LE-EDGLPTNLHSLWIEDNMEIWKSMI 591 (725)
Q Consensus 522 ~~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~----~~-~~~~~~~L~~L~l~~n~~~~~~~~ 591 (725)
+..+ ++|+.|++++|.... .++..+..+++|++|++++|..-.. ++ .....++|+.|++++|........
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3344 678888888887542 2333456677888888888742211 10 011225888888888865432222
Q ss_pred hccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccc----ccccccccCCcCCCeEecc
Q 048826 592 ERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL----ERLSSSIVDLQNLTSLYLL 667 (725)
Q Consensus 592 ~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~i~~~~~~~~~L~~L~l~ 667 (725)
.....+..+++|++|++++|......+..-... .....+.|++|++++|... ..+...+..+++|+.++++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~-----~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASA-----LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHH-----HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 222446677888999988853221111000000 0002368999999886432 2333444566888899888
Q ss_pred CCC
Q 048826 668 DCP 670 (725)
Q Consensus 668 ~c~ 670 (725)
+|+
T Consensus 287 ~N~ 289 (319)
T cd00116 287 GNK 289 (319)
T ss_pred CCC
Confidence 864
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.99 E-value=4.3e-10 Score=127.96 Aligned_cols=70 Identities=21% Similarity=0.258 Sum_probs=38.3
Q ss_pred hhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCc
Q 048826 247 SHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSL 326 (725)
Q Consensus 247 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 326 (725)
+...+|..++.|++||+++|..+..+|.. ++.+ -+|++|+++++.+ ..+|.++++++.|.+|++..+...
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~I-~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTGI-SHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCCc-cccchHHHHHHhhheecccccccc
Confidence 44445555666666666655555555543 4444 5555666655544 355555555555555555554433
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.2e-09 Score=108.68 Aligned_cols=208 Identities=15% Similarity=0.081 Sum_probs=126.4
Q ss_pred CccEEEEecccchhhhh-hhhcCCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCC-CCcCcCcCce
Q 048826 455 SLKSLSVYGCSKLESIA-ERLDNNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTR 530 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~ 530 (725)
+|+.+.|+++....... .....|++++.||+++|-... .+-.....+|+|+.|+++.|....-... .-..++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 36666666654332211 234456777777777743221 2223345577777777777543211110 1124567888
Q ss_pred eeeccccCc-cccccccCCCCCcceeecCCCCCCC-CcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826 531 LTILDCKRL-EALPKGLHNLTSLQQLTIGKGGELP-SLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI 608 (725)
Q Consensus 531 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 608 (725)
|.+++|... +++-..+..+|+|+.|++..|..+. .......++.|++|+|++|+.+..... .....++.|+.|.+
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNL 278 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccchhhhhc
Confidence 888888754 2333345678899999998884322 223345568999999999987642211 34678889999999
Q ss_pred ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc--cccCCcCCCeEeccCCC
Q 048826 609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS--SIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~ 670 (725)
+.|......+|+.-. ......+++|++|.+..| .+..+++ .+..+++|+.|.+..++
T Consensus 279 s~tgi~si~~~d~~s----~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 279 SSTGIASIAEPDVES----LDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccCcchhcCCCccc----hhhhcccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence 987655555555410 001126899999999995 4655543 44567788888766543
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=3.8e-09 Score=120.34 Aligned_cols=230 Identities=23% Similarity=0.243 Sum_probs=156.8
Q ss_pred CccEEEEeccc--chhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 455 SLKSLSVYGCS--KLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 455 ~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
.|++|-+.++. ........|..++.|++||+++|.....+|..++++-+|++|++++ ..+..+|.++..+.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheec
Confidence 58888888875 3444445577899999999999888999999999999999999998 45678899999999999999
Q ss_pred eccccCccccccccCCCCCcceeecCCCCCCC---CcccCCCcccccceecccchhhHHHHhhccccccccCCCc----E
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELP---SLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLR----R 605 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~----~ 605 (725)
+..+.....+|.....+.+|++|.+.....-. .+.....+.+|+.+.+...... .. ..+..++.|. .
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--~~----e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--LL----EDLLGMTRLRSLLQS 698 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH--hH----hhhhhhHHHHHHhHh
Confidence 99888777777666779999999886653111 1122334466666666544330 11 1123333333 2
Q ss_pred EEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-----cccC-CcCCCeEeccCCCCCcccCCCC
Q 048826 606 LTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-----SIVD-LQNLTSLYLLDCPKLRYFPEKG 679 (725)
Q Consensus 606 L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-----~~~~-~~~L~~L~l~~c~~l~~l~~~~ 679 (725)
+.+.+ ......+... ..+.+|+.|.+.+|...+.... .... |+++.++.+.+|...+.+....
T Consensus 699 l~~~~--~~~~~~~~~~---------~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 699 LSIEG--CSKRTLISSL---------GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred hhhcc--cccceeeccc---------ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence 22222 2222223222 3678999999999876532221 1122 7788888888888887777666
Q ss_pred CcccccEEEecCCchhHHhhhcc
Q 048826 680 LPSSLLQLHIYRCPLIEEKCRKD 702 (725)
Q Consensus 680 ~~~~L~~L~l~~c~~l~~~~~~~ 702 (725)
++|+|+.|.+..|+.++++....
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred ccCcccEEEEecccccccCCCHH
Confidence 78999999999998888765543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=8.4e-09 Score=93.78 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=51.3
Q ss_pred cCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCC
Q 048826 25 MLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSS 104 (725)
Q Consensus 25 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 104 (725)
.+..+.++++|+|+++.+..+.. ++ ..+.+|+.|++++| .++.++.+..++.|+.|++++|. ++.++..+.
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~-L~-~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~----- 84 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIEN-LG-ATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD----- 84 (175)
T ss_dssp ----------------------S----TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH-----
T ss_pred ccccccccccccccccccccccc-hh-hhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH-----
Confidence 34455678999999999988753 43 14789999999998 89999889999999999999998 887754321
Q ss_pred CCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccE
Q 048826 105 TPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCK 184 (725)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~ 184 (725)
..+|+|++|.+++ +++.++.. ...+..+++|+.|++.++|--. .+ ..-...+..+|+|+.
T Consensus 85 ~~lp~L~~L~L~~-N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~--~~--------------~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 85 KNLPNLQELYLSN-NKISDLNE---LEPLSSLPKLRVLSLEGNPVCE--KK--------------NYRLFVIYKLPSLKV 144 (175)
T ss_dssp HH-TT--EEE-TT-S---SCCC---CGGGGG-TT--EEE-TT-GGGG--ST--------------THHHHHHHH-TT-SE
T ss_pred HhCCcCCEEECcC-CcCCChHH---hHHHHcCCCcceeeccCCcccc--hh--------------hHHHHHHHHcChhhe
Confidence 1289999999988 46666532 2334667788888887775321 11 011345667788888
Q ss_pred EEecCCCce
Q 048826 185 LKIYGCKKV 193 (725)
Q Consensus 185 L~l~~~~~~ 193 (725)
|+-......
T Consensus 145 LD~~~V~~~ 153 (175)
T PF14580_consen 145 LDGQDVTEE 153 (175)
T ss_dssp ETTEETTS-
T ss_pred eCCEEccHH
Confidence 876654433
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=8.2e-09 Score=102.77 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=17.2
Q ss_pred CCccEEEEecccCccccc--cccCCCCCCcEEEeecC
Q 048826 289 CRLEYLRLRYCKGLVKLP--QSSLSLSSLREIEIYKC 323 (725)
Q Consensus 289 ~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~L~~~ 323 (725)
.+|+...|+++.. ...+ .....|++++.|+|++|
T Consensus 121 kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 121 KKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred HhhhheeecCccc-cccchhhhhhhCCcceeecchhh
Confidence 5666666666543 2222 13344555555555554
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=3.2e-07 Score=93.75 Aligned_cols=94 Identities=30% Similarity=0.554 Sum_probs=60.2
Q ss_pred hcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcc
Q 048826 474 LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQ 553 (725)
Q Consensus 474 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 553 (725)
+..+.+++.|++++| .++.+|. -.++|++|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445688888898887 6777762 23468888888888877777543 34788888888765555553 466
Q ss_pred eeecCCCCCCCCcccCCCcccccceeccc
Q 048826 554 QLTIGKGGELPSLEEDGLPTNLHSLWIED 582 (725)
Q Consensus 554 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 582 (725)
.|+++++. ...+ ...+++|++|.+.+
T Consensus 116 ~L~L~~n~-~~~L--~~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKGSA-TDSI--KNVPNGLTSLSINS 141 (426)
T ss_pred eEEeCCCC-Cccc--ccCcchHhheeccc
Confidence 66665432 1111 23446677776644
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=1.2e-07 Score=89.71 Aligned_cols=126 Identities=24% Similarity=0.278 Sum_probs=82.3
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+.|+++++++|.+ ..+..++.-.|.++.|++++| .+..+ ..+..+++|..|++++| .+..+..+-..+.+.+.|.+
T Consensus 284 q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N-~i~~v-~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQN-RIRTV-QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccch-hhhhhhhhhccceeEEecccc-ceeee-hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 3488888888754 334456666788888888884 44444 23677788888888874 44444444455667788888
Q ss_pred ccccCccccccccCCCCCcceeecCCCC--CCCCcccCCCcccccceecccchh
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGG--ELPSLEEDGLPTNLHSLWIEDNME 585 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~l~~~~~~~~~~~L~~L~l~~n~~ 585 (725)
++|. +..+ .++..+-+|..||+++|. ++..+...+.+|-|+.+.+.+|+.
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 8775 3333 356677777888888773 233444566667777777777764
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=1.4e-07 Score=85.84 Aligned_cols=85 Identities=25% Similarity=0.233 Sum_probs=30.1
Q ss_pred CcCcCceeeeccccCcccccccc-CCCCCcceeecCCCC--CCCCcccCCCcccccceecccchhhHHHHhhcccccccc
Q 048826 524 LCAKLTRLTILDCKRLEALPKGL-HNLTSLQQLTIGKGG--ELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRF 600 (725)
Q Consensus 524 ~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~--~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 600 (725)
.+++|+.|++++|.. +.+...+ ..+++|++|++++|. .+..+.....+++|+.|++.+|+..... ......+..+
T Consensus 62 ~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~-~YR~~vi~~l 139 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRI-SSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK-NYRLFVIYKL 139 (175)
T ss_dssp --TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST-THHHHHHHH-
T ss_pred ChhhhhhcccCCCCC-CccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh-hHHHHHHHHc
Confidence 344555555555542 2232222 235555555555552 1222223334466666666666543211 1112346678
Q ss_pred CCCcEEEeec
Q 048826 601 SSLRRLTIIN 610 (725)
Q Consensus 601 ~~L~~L~l~~ 610 (725)
|+|+.||-..
T Consensus 140 P~Lk~LD~~~ 149 (175)
T PF14580_consen 140 PSLKVLDGQD 149 (175)
T ss_dssp TT-SEETTEE
T ss_pred ChhheeCCEE
Confidence 8888887655
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=1e-07 Score=90.17 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=65.2
Q ss_pred cCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEE
Q 048826 527 KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRL 606 (725)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 606 (725)
.|+.+|+++|. ++.+...+.-.|.++.|+++.|. +..+.....+++|+.||+++|.... +. .+-.++.|.+.|
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~--~~---Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAE--CV---GWHLKLGNIKTL 357 (490)
T ss_pred hhhhccccccc-hhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHh--hh---hhHhhhcCEeee
Confidence 45555555554 33444444455555555555552 2222334444555555555553321 10 112245566666
Q ss_pred EeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc--cccCCcCCCeEeccCCCC
Q 048826 607 TIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS--SIVDLQNLTSLYLLDCPK 671 (725)
Q Consensus 607 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~ 671 (725)
.+++ +.++.+.. +..+-+|+.|++++ +.|+.+.. ++.++|.|+.+.+.++|.
T Consensus 358 ~La~--N~iE~LSG----------L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 358 KLAQ--NKIETLSG----------LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ehhh--hhHhhhhh----------hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 6665 33333321 12456677777777 45666543 567788888888887663
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=7.2e-07 Score=95.27 Aligned_cols=173 Identities=25% Similarity=0.326 Sum_probs=99.7
Q ss_pred CCCccEEEecCCCCcccccccccCCC-cccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCccee
Q 048826 477 NTSLEYINISNCENLKILPSGLHNLR-QLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL 555 (725)
Q Consensus 477 l~~L~~L~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 555 (725)
++.++.|++.+ +.+..++.....+. +|+.|++++ +.+..+|.....+++|+.|++++|+ +.++|...+..+.|+.|
T Consensus 115 ~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhe
Confidence 35666666665 44555555444453 677777766 3455555555666677777777766 44555544466677777
Q ss_pred ecCCCCCCCCcccC-CCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCC
Q 048826 556 TIGKGGELPSLEED-GLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLP 634 (725)
Q Consensus 556 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 634 (725)
++++| .+..++.. ..+..|++|.+.+|+... ....+..+.++..|.+.+ +....++...+ .+
T Consensus 192 ~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~--n~~~~~~~~~~---------~l 254 (394)
T COG4886 192 DLSGN-KISDLPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSN--NKLEDLPESIG---------NL 254 (394)
T ss_pred eccCC-ccccCchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCC--ceeeeccchhc---------cc
Confidence 77776 34444433 344557777777774221 112344555555555444 33333333332 45
Q ss_pred CCCcEEEeccCcccccccccccCCcCCCeEeccCCCC
Q 048826 635 ASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPK 671 (725)
Q Consensus 635 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~ 671 (725)
++++.|++++ +.+..++. +..+.+|+.|+++++..
T Consensus 255 ~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 255 SNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccceecccc-cccccccc-ccccCccCEEeccCccc
Confidence 6677777777 45666665 56777777777777433
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.28 E-value=4.9e-08 Score=100.46 Aligned_cols=191 Identities=20% Similarity=0.226 Sum_probs=134.3
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
-...+++.|. ..++|..+..|..|+.+.+.. +.+..+|..+.++..|..++++. +.+..+|..+..+| |+.|-+++
T Consensus 77 t~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec
Confidence 3556777764 445677777788888888877 56777888889999999999998 56777888877774 88888888
Q ss_pred ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCC
Q 048826 536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDM 615 (725)
Q Consensus 536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 615 (725)
|+ ++.+|..++....|..|+.+.|....-.+..+.+.+|+.|.++.|+... .+..+.. -.|..||++. +.+
T Consensus 153 Nk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-----lp~El~~-LpLi~lDfSc--Nki 223 (722)
T KOG0532|consen 153 NK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-----LPEELCS-LPLIRLDFSC--NKI 223 (722)
T ss_pred Cc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-----CCHHHhC-Cceeeeeccc--Cce
Confidence 76 7788988888889999999998655544556667888888888886552 1123332 2466677765 667
Q ss_pred ccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccc---cCCcCCCeEeccCC
Q 048826 616 VSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSI---VDLQNLTSLYLLDC 669 (725)
Q Consensus 616 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~---~~~~~L~~L~l~~c 669 (725)
..+|-.+. .+..|++|.|.+|+ ++.-|..+ ....=-|.|++.-|
T Consensus 224 s~iPv~fr---------~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SYLPVDFR---------KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecchhhh---------hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 77776653 56777777777765 55544322 12233456666666
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=3e-06 Score=94.97 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=90.4
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
++.|+|++|...+.+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 78889999888888888899999999999999777778888888899999999999887778888888889999999999
Q ss_pred ccCccccccccCCC-CCcceeecCCCCCCC
Q 048826 536 CKRLEALPKGLHNL-TSLQQLTIGKGGELP 564 (725)
Q Consensus 536 ~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~ 564 (725)
|.....+|..+... .++..+++.+|..+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 98777888777543 466778888775443
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.2e-08 Score=92.84 Aligned_cols=111 Identities=12% Similarity=0.087 Sum_probs=52.3
Q ss_pred CCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc--ccCCCCCcceeecCCCCCCCCcc---cCCCccc
Q 048826 500 NLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK--GLHNLTSLQQLTIGKGGELPSLE---EDGLPTN 574 (725)
Q Consensus 500 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~ 574 (725)
.|.+|+.|.+.+......+...+..-.+|+.|+++.|...++... -+.+|+.|.+|++++|....... ....-++
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 344445555444433333333333333555555555554433221 23667777777777774332211 1223367
Q ss_pred ccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 575 LHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 575 L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
|..|+++++...-.. .........+++|.+||+++|
T Consensus 288 l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hhhhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccc
Confidence 777777777542100 000012334555555555553
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=1.1e-05 Score=82.78 Aligned_cols=39 Identities=33% Similarity=0.711 Sum_probs=20.0
Q ss_pred CccEEEecCCCCcccccccccCCCcccEEEeccCCCccccC
Q 048826 479 SLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFP 519 (725)
Q Consensus 479 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 519 (725)
+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 45555555555555554433 2455555555554444444
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=2.7e-07 Score=89.68 Aligned_cols=230 Identities=16% Similarity=0.101 Sum_probs=124.3
Q ss_pred CccEEEEecccchhh----hhhhhcCCCCccEEEecCCCCcc----cccc-------cccCCCcccEEEeccCCCccccC
Q 048826 455 SLKSLSVYGCSKLES----IAERLDNNTSLEYINISNCENLK----ILPS-------GLHNLRQLQEITIQRCGNLESFP 519 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~l~~-------~~~~l~~L~~L~l~~~~~~~~~~ 519 (725)
+++.++|++|.+... +...+.+.++|+..++++- ... .+|+ .+..++.|++++|++|-.-...+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 588899998877654 3445566778888888762 111 2222 33456788888888764332222
Q ss_pred C----CCcCcCcCceeeeccccCccc-------------cccccCCCCCcceeecCCCCCCCCccc------CCCccccc
Q 048826 520 E----GGLLCAKLTRLTILDCKRLEA-------------LPKGLHNLTSLQQLTIGKGGELPSLEE------DGLPTNLH 576 (725)
Q Consensus 520 ~----~~~~l~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~l~~~~~------~~~~~~L~ 576 (725)
. .+.++.+|++|.+.+|..-.. ......+-+.|+.+..++|. +.+.+. ....+.|+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccc
Confidence 2 234566778887777763221 11123455677777777663 221110 11226777
Q ss_pred ceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc----
Q 048826 577 SLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS---- 652 (725)
Q Consensus 577 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~---- 652 (725)
++.+..|.+....+......+..+++|+.|++.++.-... +....-..++.+++|++|++++|..-..-.
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e------gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE------GSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH------HHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 7777777554333322224566777777777777321110 000011122456678888887775332211
Q ss_pred ccc-cCCcCCCeEeccCCCCCcccCCC------CCcccccEEEecCCc
Q 048826 653 SSI-VDLQNLTSLYLLDCPKLRYFPEK------GLPSSLLQLHIYRCP 693 (725)
Q Consensus 653 ~~~-~~~~~L~~L~l~~c~~l~~l~~~------~~~~~L~~L~l~~c~ 693 (725)
..+ ..+|+|+.|.+.+|. +++-... .-.|.|++|++++|.
T Consensus 263 ~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 111 346778888877753 2221110 114678888887765
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.04 E-value=5.1e-06 Score=88.70 Aligned_cols=190 Identities=24% Similarity=0.288 Sum_probs=136.3
Q ss_pred cEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcC-cCceeeeccccCccccccccCCCCCcceeecCC
Q 048826 481 EYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCA-KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGK 559 (725)
Q Consensus 481 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 559 (725)
..++...+...... ..+..++.++.|++.+ ..+..++.....+. +|+.|++++|. ...+|..+..++.|+.|++++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCC-cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCC
Confidence 34666654332322 3345568899999998 55677776666774 99999999998 556766789999999999999
Q ss_pred CCCCCCcccCC-CcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCc
Q 048826 560 GGELPSLEEDG-LPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLT 638 (725)
Q Consensus 560 ~~~l~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 638 (725)
| .+..++... ..+.|+.|++++|.... ++ .......+|++|.+++ +.....+.... .+.++.
T Consensus 173 N-~l~~l~~~~~~~~~L~~L~ls~N~i~~--l~---~~~~~~~~L~~l~~~~--N~~~~~~~~~~---------~~~~l~ 235 (394)
T COG4886 173 N-DLSDLPKLLSNLSNLNNLDLSGNKISD--LP---PEIELLSALEELDLSN--NSIIELLSSLS---------NLKNLS 235 (394)
T ss_pred c-hhhhhhhhhhhhhhhhheeccCCcccc--Cc---hhhhhhhhhhhhhhcC--Ccceecchhhh---------hccccc
Confidence 9 455555543 67999999999997542 11 1223455699999998 32334444332 567888
Q ss_pred EEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCC
Q 048826 639 SLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRC 692 (725)
Q Consensus 639 ~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 692 (725)
.+.+.+ +.+..++..+..+++++.|++++ +.+..++..+-..+++.|++.+.
T Consensus 236 ~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 236 GLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCc
Confidence 888777 55666677778899999999999 56777777555688999999874
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.1e-07 Score=87.12 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=68.0
Q ss_pred CCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC---C
Q 048826 256 CSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE---V 332 (725)
Q Consensus 256 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~ 332 (725)
..|++|||+. ..++. ..+..+..-+.+|+.|.|.+++....+...++.=.+|+.|+|++|..++.... +
T Consensus 185 sRlq~lDLS~-s~it~-------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITV-------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcch-hheeH-------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHH
Confidence 4678888877 34443 22333333447888888888877777777777777888888888876655432 2
Q ss_pred CCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826 333 ALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH 373 (725)
Q Consensus 333 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 373 (725)
..++.|..|+++-|.............--+.|..|+++++.
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 23667777777777654444333322333566666666654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=7.7e-06 Score=60.74 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=30.8
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccC
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRC 512 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~ 512 (725)
+|++|++++|.+....+..|..+++|++|++++|. +..+ +..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 36666666665544444555556666666666533 3333 334555666666666554
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.94 E-value=1e-06 Score=85.70 Aligned_cols=190 Identities=17% Similarity=0.201 Sum_probs=116.7
Q ss_pred hhhcCCCCccEEEecCCCCcccc----cccccCCCcccEEEeccCCCcccc-------------CCCCcCcCcCceeeec
Q 048826 472 ERLDNNTSLEYINISNCENLKIL----PSGLHNLRQLQEITIQRCGNLESF-------------PEGGLLCAKLTRLTIL 534 (725)
Q Consensus 472 ~~~~~l~~L~~L~l~~~~~~~~l----~~~~~~l~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~ 534 (725)
+.+..+++|+++++|+|-.-..- -..+.++..|++|.+.+|..-..- ......-+.|++++..
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34445566777777664322211 122345667777777766432111 1123345688888888
Q ss_pred cccCc----cccccccCCCCCcceeecCCCCCCCC-c----ccCCCcccccceecccchhhHHHHhhccccccccCCCcE
Q 048826 535 DCKRL----EALPKGLHNLTSLQQLTIGKGGELPS-L----EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRR 605 (725)
Q Consensus 535 ~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~-~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 605 (725)
.|+.- +.+...+...+.|+.+.+..|..-.. + .....+++|+.||+++|-............+..+++|++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 87632 12333567778999999988854332 1 123457999999999997665444333456778899999
Q ss_pred EEeecCCC---CCccCCCCCcccccCcccCCCCCCcEEEeccCccccc-----ccccccCCcCCCeEeccCCC
Q 048826 606 LTIINCDD---DMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER-----LSSSIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 606 L~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~~~~~~L~~L~l~~c~ 670 (725)
|++.+|.. +-..+-.... ...|+|+.|.+.+|. ++. +...+..-|.|++|++++|.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~--------~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALK--------ESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ecccccccccccHHHHHHHHh--------ccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99999732 1122222221 246899999999954 442 22334568999999999974
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.90 E-value=1.9e-05 Score=58.56 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=25.4
Q ss_pred cccEEEeccCCCccccC-CCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCC
Q 048826 503 QLQEITIQRCGNLESFP-EGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKG 560 (725)
Q Consensus 503 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 560 (725)
+|++|++++| .+..+| ..+..+++|++|++++|.....-+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444455443 333333 23344455555555544432222234455555555555554
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.79 E-value=2.7e-05 Score=87.31 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=66.9
Q ss_pred CccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecC
Q 048826 479 SLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIG 558 (725)
Q Consensus 479 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 558 (725)
.++.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888876666777778888888888888877767788777888888888888888777788888888888888888
Q ss_pred CCCC
Q 048826 559 KGGE 562 (725)
Q Consensus 559 ~~~~ 562 (725)
+|..
T Consensus 499 ~N~l 502 (623)
T PLN03150 499 GNSL 502 (623)
T ss_pred CCcc
Confidence 8753
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=4.6e-06 Score=89.19 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=61.6
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
++.+.++.+.+.. +...+..+.+|+.|++.+ +.+..+...+..+++|++|++++|. ++.+. ....++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheecc
Confidence 4444444443322 222345556666666666 3444443334556666666666643 33332 223344566666666
Q ss_pred ccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826 536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~ 585 (725)
|.. ..+ ..+..++.|+.+++++|.. ..+.. ...+.+++.+++.+|..
T Consensus 150 N~i-~~~-~~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 150 NLI-SDI-SGLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred Ccc-hhc-cCCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCch
Confidence 652 222 2344466666666666632 22222 24456666666666644
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.63 E-value=6.9e-06 Score=85.07 Aligned_cols=144 Identities=28% Similarity=0.372 Sum_probs=90.7
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
|..+.+..|. ...+|..+..+..|+.++++. +.+..+|..+..++ |+.|.+++ +.++.+|..++..+.|..||.+.
T Consensus 100 Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh
Confidence 4445554442 334555666777777777776 45566666665544 67777766 55667777666777777777777
Q ss_pred ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
|. +..+|..+..+.+|+.|.+..|....-.++.. .-.|.+||+++|+... .|..|..|++|++|.+.+
T Consensus 176 ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 176 NE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred hh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeecc
Confidence 76 45667777777777777777774433222233 3567777777775432 234577777777777776
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.51 E-value=0.0001 Score=50.03 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=29.5
Q ss_pred CCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceecc
Q 048826 55 SNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLG 95 (725)
Q Consensus 55 ~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~ 95 (725)
++|++|++++| .++++|+ +++|++|+.|++++|. +++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 47888888887 7888888 8888888888888886 55543
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00026 Score=64.05 Aligned_cols=104 Identities=16% Similarity=0.267 Sum_probs=75.7
Q ss_pred cceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCCcc
Q 048826 32 LKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLE 111 (725)
Q Consensus 32 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~ 111 (725)
=++++++++++..+-. ++ ....+...++++++ .+..++.+.+++.|..|.+++|. |..|.+.... .+|+|+
T Consensus 21 e~e~~LR~lkip~ien-lg-~~~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNr-It~I~p~L~~-----~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LG-ATLDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDLDT-----FLPNLK 91 (233)
T ss_pred ccccccccccccchhh-cc-ccccccceeccccc-chhhcccCCCccccceEEecCCc-ceeeccchhh-----hccccc
Confidence 3556677776644322 21 13567888999997 88899889999999999999998 8888765432 378999
Q ss_pred eeeecccccccccccCCCCCCCCCCCCccEEEeccCc
Q 048826 112 TLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCS 148 (725)
Q Consensus 112 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 148 (725)
+|.+.+. ++.+... ...+..||+|++|.+-+++
T Consensus 92 ~L~LtnN-si~~l~d---l~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 92 TLILTNN-SIQELGD---LDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred eEEecCc-chhhhhh---cchhccCCccceeeecCCc
Confidence 9999984 4444322 3445778899999988775
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=7.6e-06 Score=87.07 Aligned_cols=124 Identities=19% Similarity=0.135 Sum_probs=76.2
Q ss_pred eeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcccccc-ccCC
Q 048826 233 LEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQ-SSLS 311 (725)
Q Consensus 233 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~~~~ 311 (725)
|...+|+.|.. ...+..+.-++.|+.|+|+++ +++.. +.+..+ ++|++|||++|.. ..+|. +...
T Consensus 166 L~~a~fsyN~L--~~mD~SLqll~ale~LnLshN-k~~~v------~~Lr~l----~~LkhLDlsyN~L-~~vp~l~~~g 231 (1096)
T KOG1859|consen 166 LATASFSYNRL--VLMDESLQLLPALESLNLSHN-KFTKV------DNLRRL----PKLKHLDLSYNCL-RHVPQLSMVG 231 (1096)
T ss_pred HhhhhcchhhH--HhHHHHHHHHHHhhhhccchh-hhhhh------HHHHhc----ccccccccccchh-ccccccchhh
Confidence 33444555554 344555677788888888885 33332 123333 6888999988876 44554 3344
Q ss_pred CCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826 312 LSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH 373 (725)
Q Consensus 312 l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 373 (725)
++ |+.|.+++|. ++.+-....+.+|+.|++++|-..+ ..+...-..+..|+.|++.+|+
T Consensus 232 c~-L~~L~lrnN~-l~tL~gie~LksL~~LDlsyNll~~-hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNA-LTTLRGIENLKSLYGLDLSYNLLSE-HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hh-heeeeecccH-HHhhhhHHhhhhhhccchhHhhhhc-chhhhHHHHHHHHHHHhhcCCc
Confidence 44 8888888864 6777667778888888888775222 1111111123567888887775
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0003 Score=67.30 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=99.4
Q ss_pred CCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCc-cccccccCCCCCc
Q 048826 476 NNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRL-EALPKGLHNLTSL 552 (725)
Q Consensus 476 ~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L 552 (725)
.++.++.+|+.+|.... ++...+.++|.|+.|+++.|+.-..|........+|++|-+.+.... +.....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34556666666533221 22333455666666666665543333322234446666666554422 1122234556677
Q ss_pred ceeecCCCC--CC--CCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccC
Q 048826 553 QQLTIGKGG--EL--PSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLG 628 (725)
Q Consensus 553 ~~L~l~~~~--~l--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~ 628 (725)
+.|.++.|. ++ ..-....+-+.+++|....|... .+.......+.++++..+.+..|+....+-....
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~--~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s------ 220 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ--LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS------ 220 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHH--HHHHHHhHHhhcccchheeeecCcccchhhcccC------
Confidence 777777662 11 11011123367777888777654 2222223455678888888877432222211111
Q ss_pred cccCCCCCCcEEEeccCcccccccc--cccCCcCCCeEeccCCCCCcccCC
Q 048826 629 TTLPLPASLTSLWISNFPNLERLSS--SIVDLQNLTSLYLLDCPKLRYFPE 677 (725)
Q Consensus 629 ~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l~~ 677 (725)
..+|.+-.|.++. +++....+ ++..|+.|..|.+++.|....+..
T Consensus 221 ---e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 221 ---EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred ---CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 2345566677777 44555432 456788888888888877655543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.32 E-value=8.6e-06 Score=86.65 Aligned_cols=125 Identities=26% Similarity=0.314 Sum_probs=91.8
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCC-CcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG-GLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l 533 (725)
.|...++++| .+..+-.++.-++.|+.|++++| .++.+ ..+..++.|++||+++| .++.+|.. ...| .|..|.+
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchh-hhhhh-HHHHhcccccccccccc-hhccccccchhhh-hheeeee
Confidence 4777777776 45555667778899999999995 45555 36778999999999995 45666653 3344 5999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCCC--CCCcccCCCcccccceecccchhh
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGE--LPSLEEDGLPTNLHSLWIEDNMEI 586 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--l~~~~~~~~~~~L~~L~l~~n~~~ 586 (725)
++|. ++.+ .++.++++|+.||+++|-. ...+.....+..|+.|.|.+|+.-
T Consensus 240 rnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9997 4444 4678999999999999822 122333445689999999999753
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.00023 Score=68.12 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=35.0
Q ss_pred ccCCccEEEEecccCcc--ccccccCCCCCCcEEEeecCCCccccCCCC-CCCCCceEEeecc
Q 048826 287 LSCRLEYLRLRYCKGLV--KLPQSSLSLSSLREIEIYKCSSLVSFPEVA-LPSKLKKIQFREC 346 (725)
Q Consensus 287 ~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~l~~~ 346 (725)
..+.++.|||.+|.+.. .+...+.++|.|+.|+|+.|+.-..+.... -..+|++|-+.|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 34677777777776643 444455677777777777765333333222 2456666666554
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.21 E-value=2.9e-05 Score=85.54 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=54.0
Q ss_pred hhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecc-cCccccc----cccCCCCCCcEEEeecC
Q 048826 249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYC-KGLVKLP----QSSLSLSSLREIEIYKC 323 (725)
Q Consensus 249 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~----~~~~~l~~L~~L~L~~~ 323 (725)
..+...++.|+.+.+.+|..+.... +..+....++|+.|+++++ ......+ .....+++|+.|+++++
T Consensus 181 ~~l~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 181 LRLLSSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred HHHHhhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 3344456777777777776665422 2222223367777777663 2211111 12334456666666665
Q ss_pred CCccccCC---CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826 324 SSLVSFPE---VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH 373 (725)
Q Consensus 324 ~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 373 (725)
..+++..- ...+++|++|.+.+|..++..........++.|++|++.+|.
T Consensus 254 ~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 53333221 111445555555555433322222222233444444444443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.14 E-value=0.00032 Score=47.58 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=34.6
Q ss_pred CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCC
Q 048826 30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSV 74 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 74 (725)
++|++|+++++++..+|..+.. +++|+.|++++| .+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~--l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSN--LPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTT--CTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhC--CCCCCEEEecCC-CCCCCcCC
Confidence 5899999999999999886765 999999999998 78777654
No 56
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.10 E-value=9.2e-05 Score=81.62 Aligned_cols=60 Identities=25% Similarity=0.517 Sum_probs=27.3
Q ss_pred CCCCCccEEEeccCcCcccc----cCCCCCcceeeeeccChhh-----hhhccCCCcccEEEecCCCce
Q 048826 134 EGFPKLRELHVIRCSKLQGT----FPEHLPALEMLAIEKCEEL-----LASITCLPALCKLKIYGCKKV 193 (725)
Q Consensus 134 ~~l~~L~~L~l~~c~~l~~~----~p~~l~~L~~L~l~~~~~l-----~~~~~~~~~L~~L~l~~~~~~ 193 (725)
..+.+|+.|+++.|..+++. +...+++|+.|.+.+|..+ ......++.|++|++++|...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 33456666666655433211 1111334444444433321 233445566666666666533
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.08 E-value=0.00014 Score=77.80 Aligned_cols=100 Identities=22% Similarity=0.327 Sum_probs=62.5
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+|..|++.+|.+... ...+..+++|++|++++ +.++.+ ..+..++.|+.|++.+|. +..+. .+..+++|+.++++
T Consensus 96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhhc-ccchhhhhcchheeccc-cccccc-cchhhccchhhheeccCc-chhcc-CCccchhhhcccCC
Confidence 477777777654433 22256677888888887 445544 235566678888888754 34443 23336678888888
Q ss_pred cccCccccccc-cCCCCCcceeecCCC
Q 048826 535 DCKRLEALPKG-LHNLTSLQQLTIGKG 560 (725)
Q Consensus 535 ~~~~~~~~~~~-~~~l~~L~~L~l~~~ 560 (725)
+|.... +... ...+.+++.+++++|
T Consensus 171 ~n~i~~-ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 171 YNRIVD-IENDELSELISLEELDLGGN 196 (414)
T ss_pred cchhhh-hhhhhhhhccchHHHhccCC
Confidence 877433 3221 466777777888777
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00029 Score=78.90 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=17.5
Q ss_pred hhhhccCCccEEEEecccCccccccccCCCCCCcEEEeec
Q 048826 283 QLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYK 322 (725)
Q Consensus 283 ~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 322 (725)
.+..-+|+|..||++++++. .+ .+++++++|++|.+.+
T Consensus 167 ~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 167 QLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred HHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccC
Confidence 33333355555555554432 22 3445555555555444
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.83 E-value=0.00047 Score=65.16 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=69.7
Q ss_pred CcCcCcCceeeeccccCcccccc----ccCCCCCcceeecCCCCCCCCcc---------------cCCCcccccceeccc
Q 048826 522 GLLCAKLTRLTILDCKRLEALPK----GLHNLTSLQQLTIGKGGELPSLE---------------EDGLPTNLHSLWIED 582 (725)
Q Consensus 522 ~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~---------------~~~~~~~L~~L~l~~ 582 (725)
...||.|+.+++++|......|. .+++-..|++|.+++|.. ..+. ....-|.|+++....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 34555666666666654433333 234556666666666631 1110 011226777777777
Q ss_pred chhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc-----cccccC
Q 048826 583 NMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL-----SSSIVD 657 (725)
Q Consensus 583 n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-----~~~~~~ 657 (725)
|+..+.+.......+..-.+|+.+.+..+... |.+++....+. +....+|+.|++.+| .++.. ...+.+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr----pegv~~L~~~g-l~y~~~LevLDlqDN-tft~~gS~~La~al~~ 240 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIR----PEGVTMLAFLG-LFYSHSLEVLDLQDN-TFTLEGSRYLADALCE 240 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcC----cchhHHHHHHH-HHHhCcceeeecccc-chhhhhHHHHHHHhcc
Confidence 76554333222223444467777777764221 22111111111 124567777777774 33322 122344
Q ss_pred CcCCCeEeccCC
Q 048826 658 LQNLTSLYLLDC 669 (725)
Q Consensus 658 ~~~L~~L~l~~c 669 (725)
.+.|+.|.+.+|
T Consensus 241 W~~lrEL~lnDC 252 (388)
T COG5238 241 WNLLRELRLNDC 252 (388)
T ss_pred cchhhhccccch
Confidence 566777777776
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.71 E-value=0.0011 Score=74.50 Aligned_cols=134 Identities=17% Similarity=0.166 Sum_probs=66.7
Q ss_pred CccEEEeccCcCccc----ccCCCCCcceeeeeccCh----hhhhhccCCCcccEEEecCCCceeEcccccccCCCCccc
Q 048826 138 KLRELHVIRCSKLQG----TFPEHLPALEMLAIEKCE----ELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVV 209 (725)
Q Consensus 138 ~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 209 (725)
+|++|++++-..+.. .+...+|.|++|.+.+-. ....-...+|+|..|+|++++.....+..
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS---------- 192 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGIS---------- 192 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHh----------
Confidence 455555554322221 222345666666666522 22344567778888888877755542221
Q ss_pred ccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccC
Q 048826 210 CGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSC 289 (725)
Q Consensus 210 ~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~ 289 (725)
.+.+|+.|.+.++.--.. ..-.-+..+++|++||++.-.....- ......+..-.. .|
T Consensus 193 ----------------~LknLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~-Lp 250 (699)
T KOG3665|consen 193 ----------------RLKNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMV-LP 250 (699)
T ss_pred ----------------ccccHHHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccch--HHHHHHHHhccc-Cc
Confidence 244555554444443221 11112356889999998874433321 111112222222 25
Q ss_pred CccEEEEecccCcc
Q 048826 290 RLEYLRLRYCKGLV 303 (725)
Q Consensus 290 ~L~~L~L~~~~~~~ 303 (725)
.|+.||.++.....
T Consensus 251 eLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 251 ELRFLDCSGTDINE 264 (699)
T ss_pred cccEEecCCcchhH
Confidence 77777777655443
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.33 E-value=0.00057 Score=57.77 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=67.5
Q ss_pred ccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826 573 TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS 652 (725)
Q Consensus 573 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 652 (725)
..+..++++.|+.+. +.+..+.+.....|+..++++ +....||..... .++.++.|.+++ +.+..+|
T Consensus 27 kE~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~--N~fk~fp~kft~--------kf~t~t~lNl~~-neisdvP 93 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSD--NGFKKFPKKFTI--------KFPTATTLNLAN-NEISDVP 93 (177)
T ss_pred HHhhhcccccchhhH--HHHHHHHHhCCceEEEEeccc--chhhhCCHHHhh--------ccchhhhhhcch-hhhhhch
Confidence 566778888887652 222235566777888888988 788888887653 678899999998 7899999
Q ss_pred ccccCCcCCCeEeccCCCCC
Q 048826 653 SSIVDLQNLTSLYLLDCPKL 672 (725)
Q Consensus 653 ~~~~~~~~L~~L~l~~c~~l 672 (725)
..+..++.|+.|+++.++..
T Consensus 94 eE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 94 EELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HHHhhhHHhhhcccccCccc
Confidence 98889999999999987643
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.26 E-value=0.0062 Score=55.40 Aligned_cols=13 Identities=23% Similarity=0.061 Sum_probs=6.0
Q ss_pred cccccceecccch
Q 048826 572 PTNLHSLWIEDNM 584 (725)
Q Consensus 572 ~~~L~~L~l~~n~ 584 (725)
+|+|++|.+-+|+
T Consensus 112 ~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 112 CPKLEYLTLLGNP 124 (233)
T ss_pred CCccceeeecCCc
Confidence 3444444444443
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.09 E-value=0.00053 Score=57.95 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=74.2
Q ss_pred ccEEEEecccchh--hhhhhhcCCCCccEEEecCCCCccccccccc-CCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 456 LKSLSVYGCSKLE--SIAERLDNNTSLEYINISNCENLKILPSGLH-NLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 456 L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
+..++|++|...- ..+-.+.....|...++++ +.+..+|..+. .++.++.+++.+ +.+.++|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 6777888886542 2233445566777788888 56666666554 467889999988 57788888888899999999
Q ss_pred eccccCccccccccCCCCCcceeecCCCC
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
++.|+.. ..|..+..+.++..|+..+|.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 9998844 455556557788888877763
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.00046 Score=65.48 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=60.7
Q ss_pred CCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCC
Q 048826 29 HKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFP 108 (725)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 108 (725)
..+.+.|+.-|+++..+. +.. -++.|++|.|+-| .++.+.++..|++|+.|+|..|. |+.+..-+.- ..+|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~-kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~YL----knlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICE-KMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEYL----KNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHH-hcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHHH----hcCc
Confidence 356667776666665543 221 2788999999987 88899889999999999999876 7766554332 2278
Q ss_pred Ccceeeecccccccc
Q 048826 109 CLETLRFEDMEEWED 123 (725)
Q Consensus 109 ~L~~L~l~~~~~l~~ 123 (725)
+|++|++...|....
T Consensus 89 sLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGE 103 (388)
T ss_pred hhhhHhhccCCcccc
Confidence 888888877665443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.22 E-value=0.029 Score=53.48 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=61.7
Q ss_pred hhcCCCCccEEEecCCCCcccccc----cccCCCcccEEEeccCCCccccCC--------------CCcCcCcCceeeec
Q 048826 473 RLDNNTSLEYINISNCENLKILPS----GLHNLRQLQEITIQRCGNLESFPE--------------GGLLCAKLTRLTIL 534 (725)
Q Consensus 473 ~~~~l~~L~~L~l~~~~~~~~l~~----~~~~l~~L~~L~l~~~~~~~~~~~--------------~~~~l~~L~~L~l~ 534 (725)
.+..||+|+..++++|-.-...|+ .+.+-+.|++|.+++|.. +-+.. ....-|.|+++...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 344566666666666543333332 233445666666666432 11110 12233556666665
Q ss_pred cccCcccccc-----ccCCCCCcceeecCCCCCCCC----ccc--CCCcccccceecccchhhHHHHhhccccccccCCC
Q 048826 535 DCKRLEALPK-----GLHNLTSLQQLTIGKGGELPS----LEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSL 603 (725)
Q Consensus 535 ~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~l~~----~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 603 (725)
.|+. ...+. .+.+-..|+.+.+..|..-+. ... ...+.+|+.||+.+|-.........+..+..++.|
T Consensus 166 rNRl-engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRL-ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchh-ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 5542 11111 222234666666666632211 111 12235666666666644332222212233444445
Q ss_pred cEEEeecC
Q 048826 604 RRLTIINC 611 (725)
Q Consensus 604 ~~L~l~~~ 611 (725)
++|.+.+|
T Consensus 245 rEL~lnDC 252 (388)
T COG5238 245 RELRLNDC 252 (388)
T ss_pred hhccccch
Confidence 55555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.07 E-value=0.0072 Score=57.41 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=42.0
Q ss_pred CCCCccEEEecCCCCcccccccccCCCcccEEEeccC--CCccccCCCCcCcCcCceeeeccccCcc--ccccccCCCCC
Q 048826 476 NNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRC--GNLESFPEGGLLCAKLTRLTILDCKRLE--ALPKGLHNLTS 551 (725)
Q Consensus 476 ~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~ 551 (725)
.+..|+.+.+.++. ++++ ..+..+++|+.|.++.| .....++.....+|+|+++++++|.... .+ ..+..+++
T Consensus 41 ~~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELEN 117 (260)
T ss_pred cccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcc
Confidence 44556666665532 2222 22445667777777766 3333444444455666666666665321 11 12344555
Q ss_pred cceeecCCC
Q 048826 552 LQQLTIGKG 560 (725)
Q Consensus 552 L~~L~l~~~ 560 (725)
|..|++.+|
T Consensus 118 L~~Ldl~n~ 126 (260)
T KOG2739|consen 118 LKSLDLFNC 126 (260)
T ss_pred hhhhhcccC
Confidence 555666555
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.74 E-value=0.014 Score=55.44 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=16.1
Q ss_pred CCCCccEEEecCC--CCcccccccccCCCcccEEEeccC
Q 048826 476 NNTSLEYINISNC--ENLKILPSGLHNLRQLQEITIQRC 512 (725)
Q Consensus 476 ~l~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~l~~~ 512 (725)
.+++|++|.+++| .....++.....+|+|+++++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3445555555554 222233333333455555555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.0047 Score=58.85 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=9.6
Q ss_pred hhccCCCcccEEEecCCC
Q 048826 174 ASITCLPALCKLKIYGCK 191 (725)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~ 191 (725)
+.+..|+.|+.|.++-|.
T Consensus 35 sic~kMp~lEVLsLSvNk 52 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNK 52 (388)
T ss_pred HHHHhcccceeEEeeccc
Confidence 344455555555555554
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=0.013 Score=53.49 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=37.2
Q ss_pred CCCcceeeecccccccccccCCCCCCC-CCCCCccEEEeccCcCcccccC---CCCCcceeeeeccCh
Q 048826 107 FPCLETLRFEDMEEWEDWIPHGSSQGV-EGFPKLRELHVIRCSKLQGTFP---EHLPALEMLAIEKCE 170 (725)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~ 170 (725)
++.++.|++.+|..+.+|. .+.+ ...++|+.|+|++|+.++..-- ..+++|+.|.+.+-+
T Consensus 124 l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 6677777888888888875 3444 4567788888888877762111 124455555555543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=0.016 Score=52.78 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=50.7
Q ss_pred cCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcc---cCCCcccccceecccchhhHHHHhhccccccccCCC
Q 048826 527 KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE---EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSL 603 (725)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 603 (725)
.++.+|-+++....+--..+..+++++.|.+.+|..+.+.. ..+..++|+.|+|++|+.+++.... .+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~---~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA---CLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH---HHHHhhhh
Confidence 45566666655444433445667777778888876665421 1224488888888888877654432 46667777
Q ss_pred cEEEeec
Q 048826 604 RRLTIIN 610 (725)
Q Consensus 604 ~~L~l~~ 610 (725)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7777765
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.29 E-value=0.11 Score=29.03 Aligned_cols=19 Identities=37% Similarity=0.356 Sum_probs=10.4
Q ss_pred ccEEEEecccCccccccccC
Q 048826 291 LEYLRLRYCKGLVKLPQSSL 310 (725)
Q Consensus 291 L~~L~L~~~~~~~~~~~~~~ 310 (725)
|++|+|++|.+. .+|++++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666443 5555444
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.68 E-value=0.97 Score=39.07 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=4.9
Q ss_pred CCCCCcceeecC
Q 048826 547 HNLTSLQQLTIG 558 (725)
Q Consensus 547 ~~l~~L~~L~l~ 558 (725)
..+++|+.+++.
T Consensus 78 ~~~~~l~~i~~~ 89 (129)
T PF13306_consen 78 SNCTNLKNIDIP 89 (129)
T ss_dssp TT-TTECEEEET
T ss_pred cccccccccccC
Confidence 334444444443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.88 E-value=0.22 Score=25.80 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=4.2
Q ss_pred CccEEEEecC
Q 048826 56 NLVILKFEDC 65 (725)
Q Consensus 56 ~L~~L~l~~c 65 (725)
+|+.|+|++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.85 E-value=0.21 Score=27.87 Aligned_cols=18 Identities=39% Similarity=0.355 Sum_probs=11.8
Q ss_pred CCcEEEeccCccccccccc
Q 048826 636 SLTSLWISNFPNLERLSSS 654 (725)
Q Consensus 636 ~L~~L~l~~~~~l~~i~~~ 654 (725)
+|++|++++| .++.||.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4677777775 56677753
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.03 E-value=2.2 Score=36.81 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=47.3
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCC-CCcCcCcCceee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLT 532 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~ 532 (725)
+|+.+.+.. .........|..+++|+.+.+... +..++. .+.++++|+.+.+.+ ....++. .+..+++|+.++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence 477777664 233333455677778888888662 444433 355676788888864 3334443 344577888888
Q ss_pred eccccCccccc-cccCCCCCcceeecCC
Q 048826 533 ILDCKRLEALP-KGLHNLTSLQQLTIGK 559 (725)
Q Consensus 533 l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 559 (725)
+..+ ...++ ..+..+ .|+.+.+..
T Consensus 88 ~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cCcc--ccEEchhhhcCC-CceEEEECC
Confidence 8654 33333 345555 777777654
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.93 E-value=0.65 Score=27.09 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCccceeeecCcccceeccccc
Q 048826 77 LPSLKHLAVSGMSKVKRLGSEF 98 (725)
Q Consensus 77 l~~L~~L~l~~~~~l~~i~~~~ 98 (725)
+++|++|++++|. ++.+|...
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4677888888875 77777654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.93 E-value=0.65 Score=27.09 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCccceeeecCcccceeccccc
Q 048826 77 LPSLKHLAVSGMSKVKRLGSEF 98 (725)
Q Consensus 77 l~~L~~L~l~~~~~l~~i~~~~ 98 (725)
+++|++|++++|. ++.+|...
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 4677888888875 77777654
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.47 E-value=2.5 Score=24.62 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=8.5
Q ss_pred cCCCeEeccCCCCCc
Q 048826 659 QNLTSLYLLDCPKLR 673 (725)
Q Consensus 659 ~~L~~L~l~~c~~l~ 673 (725)
++|+.|++++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 556666666665543
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.52 E-value=7.5 Score=21.97 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=12.6
Q ss_pred CccEEEEecccchhhhhhhh
Q 048826 455 SLKSLSVYGCSKLESIAERL 474 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~ 474 (725)
+|+.|+|++|.+.+.....+
T Consensus 3 ~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHHh
Confidence 58888888888776655443
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.85 E-value=7.7 Score=41.58 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=37.2
Q ss_pred hhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCC--CCCCcEEEeecCCCcccc
Q 048826 253 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS--LSSLREIEIYKCSSLVSF 329 (725)
Q Consensus 253 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~--l~~L~~L~L~~~~~~~~~ 329 (725)
.+.+.+..++|++ +++..+ +.+..+....|+|+.|+|++|.....-..++.+ ...|++|-+.||+..+.+
T Consensus 215 ~n~p~i~sl~lsn-NrL~~L------d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSN-NRLYHL------DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeeccc-chhhch------hhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 4456666666766 344444 235555566677777777777322211112222 234566666666654443
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=42.34 E-value=15 Score=21.49 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=8.4
Q ss_pred CccEEEEecCCCCCcCCC
Q 048826 56 NLVILKFEDCGMCTTWPS 73 (725)
Q Consensus 56 ~L~~L~l~~c~~l~~l~~ 73 (725)
+|+.|++++| .++.+|.
T Consensus 3 ~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNN-QLTSLPE 19 (26)
T ss_pred ccceeecCCC-ccccCcc
Confidence 3455555554 4555544
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=41.96 E-value=19 Score=21.12 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=11.2
Q ss_pred CCccceeeecCcccceec
Q 048826 77 LPSLKHLAVSGMSKVKRL 94 (725)
Q Consensus 77 l~~L~~L~l~~~~~l~~i 94 (725)
+++|+.|+++.|. |+.|
T Consensus 1 L~~L~~L~L~~Nk-I~~I 17 (26)
T smart00365 1 LTNLEELDLSQNK-IKKI 17 (26)
T ss_pred CCccCEEECCCCc-ccee
Confidence 4577888888776 4443
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.73 E-value=19 Score=38.86 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=16.1
Q ss_pred CCccEEEEecccCcc--ccccccCCCCCCcEEEeecC
Q 048826 289 CRLEYLRLRYCKGLV--KLPQSSLSLSSLREIEIYKC 323 (725)
Q Consensus 289 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~ 323 (725)
+.+..++|++|++.. .+...-...|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 455555555555421 22222233445555555554
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=23.38 E-value=58 Score=19.29 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=11.2
Q ss_pred CccEEEEecccchhhh
Q 048826 455 SLKSLSVYGCSKLESI 470 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~ 470 (725)
+|++|+|++|.+...-
T Consensus 3 ~L~~LdL~~N~i~~~G 18 (28)
T smart00368 3 SLRELDLSNNKLGDEG 18 (28)
T ss_pred ccCEEECCCCCCCHHH
Confidence 4788888888765543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=22.96 E-value=3.7 Score=38.74 Aligned_cols=33 Identities=6% Similarity=-0.194 Sum_probs=16.9
Q ss_pred CcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826 637 LTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 637 L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 670 (725)
+..+...+ +..+..|.++...|++++++..+++
T Consensus 90 ~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 90 TVNAASHK-NNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHhhc-cchhhCCccccccCCcchhhhccCc
Confidence 33344444 3455555555555556655555543
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=21.32 E-value=3.7 Score=38.78 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=35.8
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
.+.|+++.+.. ...-..++.++.+..|+++. +.+..+|..++....+..+++.. +..+..|.++...|.+++++..+
T Consensus 44 ~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRL-VNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHH-HhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhcc
Confidence 44555554422 12222333344455555554 33444444444444444444443 33444455555555555555555
Q ss_pred cc
Q 048826 536 CK 537 (725)
Q Consensus 536 ~~ 537 (725)
++
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 44
No 87
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.04 E-value=1.6e+02 Score=19.58 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=6.3
Q ss_pred CCcccccEEEec
Q 048826 679 GLPSSLLQLHIY 690 (725)
Q Consensus 679 ~~~~~L~~L~l~ 690 (725)
.+|++|++|.+.
T Consensus 31 ~lP~sl~~L~fg 42 (44)
T PF05725_consen 31 SLPNSLKSLSFG 42 (44)
T ss_pred ccCCCceEEEee
Confidence 345555555543
Done!