Query 048826
Match_columns 725
No_of_seqs 269 out of 3298
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 00:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.8E-46 2E-50 429.1 20.7 249 455-717 443-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-41 3.9E-46 393.2 28.6 576 30-693 50-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-36 1.6E-40 343.4 41.8 562 30-693 25-620 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2E-35 6.8E-40 338.2 37.4 540 25-672 44-622 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-34 8.4E-39 324.7 35.0 422 32-560 13-458 (606)
6 3t6q_A CD180 antigen; protein- 100.0 8.4E-34 2.9E-38 320.3 37.8 408 30-560 33-459 (606)
7 3t6q_A CD180 antigen; protein- 100.0 3.6E-34 1.2E-38 323.3 34.0 518 33-693 15-558 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-33 1.8E-37 313.7 37.0 476 30-610 32-530 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-31 2.2E-35 306.7 41.6 125 34-191 8-134 (844)
10 2z81_A CD282 antigen, TOLL-lik 100.0 2E-31 6.8E-36 297.2 32.2 192 454-671 310-509 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 3E-30 1E-34 301.0 35.0 500 28-611 22-557 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 1.8E-29 6.1E-34 282.9 37.3 201 455-672 326-531 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 7.4E-30 2.5E-34 286.0 33.0 477 30-611 28-528 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-29 2.4E-33 276.6 30.0 174 455-652 335-514 (549)
15 2z7x_B TOLL-like receptor 1, v 100.0 3.8E-29 1.3E-33 276.7 24.0 445 33-585 3-480 (520)
16 4eco_A Uncharacterized protein 100.0 4.1E-29 1.4E-33 281.6 23.1 103 455-560 434-546 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-28 7.7E-33 270.5 28.1 452 58-670 3-479 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 9.8E-29 3.4E-33 282.8 23.2 307 252-646 511-838 (876)
19 4g8a_A TOLL-like receptor 4; l 100.0 2E-26 6.7E-31 261.9 37.1 523 35-693 36-578 (635)
20 4eco_A Uncharacterized protein 100.0 8.4E-28 2.9E-32 270.9 25.0 343 305-693 198-598 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 8.4E-26 2.9E-30 256.6 35.8 500 30-646 52-578 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-26 4.1E-31 258.8 27.4 143 30-192 31-181 (562)
23 4ecn_A Leucine-rich repeat pro 99.9 9.8E-27 3.4E-31 266.3 26.3 339 281-693 444-838 (876)
24 1jl5_A Outer protein YOPM; leu 99.9 8E-27 2.7E-31 251.2 18.7 257 252-585 149-408 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.4E-26 2.5E-30 252.4 26.2 450 138-693 32-508 (562)
26 1jl5_A Outer protein YOPM; leu 99.9 2E-26 6.7E-31 248.2 19.1 417 54-693 10-427 (454)
27 3v47_A TOLL-like receptor 5B a 99.9 3.1E-25 1.1E-29 240.9 23.1 289 251-584 98-406 (455)
28 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.9E-29 236.5 25.8 110 454-563 299-408 (455)
29 1o6v_A Internalin A; bacterial 99.9 5.6E-24 1.9E-28 231.2 26.7 100 29-147 45-144 (466)
30 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-24 1.3E-28 230.6 19.9 143 25-190 37-180 (457)
31 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-23 4.8E-28 226.1 23.6 354 54-622 41-394 (457)
32 1o6v_A Internalin A; bacterial 99.9 4.5E-23 1.5E-27 224.1 26.5 319 289-670 68-386 (466)
33 2id5_A Lingo-1, leucine rich r 99.9 3.1E-22 1.1E-26 218.5 28.3 57 33-95 14-72 (477)
34 4fmz_A Internalin; leucine ric 99.9 5.3E-22 1.8E-26 207.2 24.4 304 253-670 41-344 (347)
35 4fmz_A Internalin; leucine ric 99.9 3.9E-22 1.3E-26 208.2 23.2 301 289-693 44-344 (347)
36 3o6n_A APL1; leucine-rich repe 99.9 7.5E-22 2.6E-26 209.4 23.3 292 247-587 60-353 (390)
37 3o6n_A APL1; leucine-rich repe 99.9 6.5E-22 2.2E-26 209.9 21.1 103 454-561 248-350 (390)
38 2id5_A Lingo-1, leucine rich r 99.9 1.2E-21 4.1E-26 213.9 23.0 177 454-646 152-331 (477)
39 3oja_B Anopheles plasmodium-re 99.9 4.6E-21 1.6E-25 214.7 21.7 308 227-587 50-359 (597)
40 3oja_B Anopheles plasmodium-re 99.8 3.5E-20 1.2E-24 207.5 23.1 84 254-347 49-134 (597)
41 3ogk_B Coronatine-insensitive 99.8 8.5E-22 2.9E-26 221.5 7.0 205 454-670 293-524 (592)
42 3ogk_B Coronatine-insensitive 99.8 1E-21 3.4E-26 220.9 7.1 129 455-584 379-524 (592)
43 2p1m_B Transport inhibitor res 99.8 1.2E-21 4.2E-26 220.4 5.2 83 455-538 433-518 (594)
44 1ogq_A PGIP-2, polygalacturona 99.8 4.1E-20 1.4E-24 189.2 15.8 127 456-584 176-302 (313)
45 2ft3_A Biglycan; proteoglycan, 99.8 3.9E-19 1.3E-23 184.0 21.5 201 456-670 125-331 (332)
46 2ft3_A Biglycan; proteoglycan, 99.8 2.6E-19 9.1E-24 185.2 18.9 104 455-560 218-330 (332)
47 1xku_A Decorin; proteoglycan, 99.8 3.7E-19 1.3E-23 184.0 19.9 60 253-324 97-156 (330)
48 1xku_A Decorin; proteoglycan, 99.8 7.1E-19 2.4E-23 181.9 21.7 129 478-610 192-328 (330)
49 4fcg_A Uncharacterized protein 99.8 1.3E-19 4.3E-24 186.7 15.7 216 456-690 83-309 (328)
50 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-20 7.8E-25 191.1 9.8 227 454-696 76-305 (313)
51 1z7x_W Ribonuclease inhibitor; 99.8 3.1E-22 1.1E-26 217.7 -4.6 268 29-373 2-295 (461)
52 4fcg_A Uncharacterized protein 99.8 2.9E-19 1E-23 183.9 16.4 221 418-668 81-310 (328)
53 1z7x_W Ribonuclease inhibitor; 99.8 7.1E-21 2.4E-25 207.0 1.1 230 455-693 171-438 (461)
54 2p1m_B Transport inhibitor res 99.8 1.7E-20 5.9E-25 210.9 3.7 405 227-671 65-518 (594)
55 2z80_A TOLL-like receptor 2, v 99.8 4.8E-18 1.6E-22 177.4 16.7 61 456-517 251-316 (353)
56 3zyi_A Leucine-rich repeat-con 99.7 1.7E-17 5.7E-22 179.4 18.5 223 454-693 75-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.7 2.7E-17 9.3E-22 177.1 19.4 219 455-693 65-290 (440)
58 3o53_A Protein LRIM1, AGAP0063 99.7 2.5E-18 8.5E-23 176.4 10.6 214 289-561 34-248 (317)
59 3g06_A SSPH2 (leucine-rich rep 99.7 8.6E-17 3E-21 178.2 22.6 256 30-373 40-295 (622)
60 2z80_A TOLL-like receptor 2, v 99.7 1.1E-17 3.6E-22 174.8 13.8 80 255-347 30-111 (353)
61 1ozn_A Reticulon 4 receptor; N 99.7 1E-17 3.4E-22 169.3 12.0 221 33-349 14-238 (285)
62 3g06_A SSPH2 (leucine-rich rep 99.7 2.2E-16 7.4E-21 175.1 23.4 155 455-647 142-296 (622)
63 3zyj_A Leucine-rich repeat-con 99.7 9.1E-17 3.1E-21 173.0 19.8 200 454-670 88-290 (440)
64 3oja_A Leucine-rich immune mol 99.7 2.1E-17 7.3E-22 179.5 14.2 84 281-372 26-109 (487)
65 3zyi_A Leucine-rich repeat-con 99.7 1E-16 3.4E-21 173.3 18.5 200 454-670 99-301 (452)
66 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-16 3.6E-21 161.7 16.6 202 454-671 32-237 (285)
67 2z66_A Variable lymphocyte rec 99.7 9.8E-17 3.3E-21 163.9 15.4 224 454-693 28-259 (306)
68 2z66_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 163.0 16.1 225 289-585 28-260 (306)
69 3o53_A Protein LRIM1, AGAP0063 99.7 2.3E-17 7.8E-22 169.3 9.5 260 232-561 11-273 (317)
70 2xwt_C Thyrotropin receptor; s 99.7 5.5E-16 1.9E-20 152.0 17.0 201 454-695 31-239 (239)
71 1wwl_A Monocyte differentiatio 99.7 1.5E-16 5.1E-21 162.7 11.1 221 456-693 65-307 (312)
72 2z62_A TOLL-like receptor 4, v 99.6 1.4E-15 4.7E-20 152.8 14.6 201 454-670 28-235 (276)
73 2xwt_C Thyrotropin receptor; s 99.6 4.2E-15 1.4E-19 145.6 15.8 214 34-347 15-237 (239)
74 4ay9_X Follicle-stimulating ho 99.6 6.2E-15 2.1E-19 153.3 16.9 221 454-691 30-255 (350)
75 3oja_A Leucine-rich immune mol 99.6 2.5E-15 8.4E-20 163.2 14.2 214 454-695 34-250 (487)
76 4ay9_X Follicle-stimulating ho 99.6 1.5E-14 5.3E-19 150.3 19.2 104 33-151 12-117 (350)
77 4glp_A Monocyte differentiatio 99.6 5.1E-15 1.7E-19 151.2 15.0 227 455-693 65-305 (310)
78 1wwl_A Monocyte differentiatio 99.6 6.9E-16 2.3E-20 157.8 8.3 196 455-670 96-307 (312)
79 1p9a_G Platelet glycoprotein I 99.6 1.9E-14 6.6E-19 145.0 18.2 174 454-646 31-206 (290)
80 2o6q_A Variable lymphocyte rec 99.6 4.8E-14 1.6E-18 140.8 19.0 106 454-560 37-143 (270)
81 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.2E-20 162.3 2.8 228 454-700 70-310 (336)
82 2ast_B S-phase kinase-associat 99.6 5.5E-16 1.9E-20 160.7 3.9 228 418-676 70-309 (336)
83 4glp_A Monocyte differentiatio 99.6 7.3E-15 2.5E-19 150.1 12.0 196 455-670 92-305 (310)
84 1p9a_G Platelet glycoprotein I 99.6 5.8E-14 2E-18 141.5 17.1 196 454-671 10-207 (290)
85 2o6q_A Variable lymphocyte rec 99.6 1.3E-13 4.5E-18 137.6 19.0 195 455-670 17-216 (270)
86 3rfs_A Internalin B, repeat mo 99.5 1.1E-14 3.8E-19 145.6 10.8 133 25-191 36-168 (272)
87 2z62_A TOLL-like receptor 4, v 99.5 2.7E-14 9.2E-19 143.3 13.5 199 478-691 28-233 (276)
88 1h6u_A Internalin H; cell adhe 99.5 4.1E-14 1.4E-18 144.1 13.1 193 454-676 41-233 (308)
89 1h6u_A Internalin H; cell adhe 99.5 4E-14 1.4E-18 144.2 12.8 195 417-653 40-234 (308)
90 3rfs_A Internalin B, repeat mo 99.5 6.3E-14 2.2E-18 140.1 12.0 124 455-585 110-234 (272)
91 2ca6_A RAN GTPase-activating p 99.5 1.1E-14 3.8E-19 153.8 4.4 107 455-561 188-314 (386)
92 2ca6_A RAN GTPase-activating p 99.4 7.7E-15 2.6E-19 155.0 0.5 208 454-670 60-314 (386)
93 3m19_A Variable lymphocyte rec 99.4 1.9E-12 6.4E-17 127.6 16.0 174 456-670 16-190 (251)
94 3m19_A Variable lymphocyte rec 99.4 8.6E-13 2.9E-17 130.1 13.0 130 454-584 35-166 (251)
95 4ezg_A Putative uncharacterize 99.4 9.2E-13 3.1E-17 124.5 11.7 146 455-610 45-190 (197)
96 3goz_A Leucine-rich repeat-con 99.4 5.4E-14 1.9E-18 147.0 2.0 244 249-561 15-295 (362)
97 3goz_A Leucine-rich repeat-con 99.4 7.6E-14 2.6E-18 145.8 1.0 230 452-693 20-295 (362)
98 2o6s_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 122.0 12.0 179 33-314 10-190 (208)
99 1h6t_A Internalin B; cell adhe 99.3 2.1E-12 7.1E-17 130.2 10.4 120 455-583 47-166 (291)
100 3cvr_A Invasion plasmid antige 99.3 5.1E-12 1.7E-16 138.2 14.1 185 455-673 60-244 (571)
101 4ezg_A Putative uncharacterize 99.3 6E-12 2.1E-16 118.9 10.5 128 454-585 66-193 (197)
102 1h6t_A Internalin B; cell adhe 99.3 9.6E-12 3.3E-16 125.3 11.7 169 475-670 43-211 (291)
103 2o6s_A Variable lymphocyte rec 99.3 8.9E-12 3E-16 118.9 10.7 128 454-583 28-158 (208)
104 3cvr_A Invasion plasmid antige 99.3 5.1E-11 1.7E-15 130.3 16.1 176 478-694 59-242 (571)
105 1m9s_A Internalin B; cell inva 99.2 1.3E-11 4.4E-16 136.7 10.3 165 455-646 44-208 (605)
106 2v9t_B SLIT homolog 2 protein 99.2 3.7E-11 1.3E-15 115.5 11.9 130 454-585 32-164 (220)
107 1xeu_A Internalin C; cellular 99.2 7E-12 2.4E-16 124.2 4.9 168 456-652 21-188 (263)
108 3e6j_A Variable lymphocyte rec 99.2 7.1E-11 2.4E-15 114.3 11.8 129 454-585 40-171 (229)
109 1m9s_A Internalin B; cell inva 99.2 4.2E-11 1.4E-15 132.5 11.3 171 474-671 39-209 (605)
110 3e6j_A Variable lymphocyte rec 99.2 2.6E-10 8.9E-15 110.3 15.3 77 480-560 21-98 (229)
111 2v9t_B SLIT homolog 2 protein 99.2 3E-10 1E-14 109.0 15.5 146 482-645 15-162 (220)
112 2ell_A Acidic leucine-rich nuc 99.2 2.5E-11 8.6E-16 111.4 6.4 138 477-620 23-164 (168)
113 2xot_A Amphoterin-induced prot 99.2 5.5E-11 1.9E-15 123.9 9.4 129 455-584 40-174 (361)
114 2v70_A SLIT-2, SLIT homolog 2 99.2 1.4E-10 4.8E-15 111.4 11.6 129 455-584 33-164 (220)
115 1xeu_A Internalin C; cellular 99.1 4.1E-11 1.4E-15 118.6 7.0 140 455-610 42-181 (263)
116 2xot_A Amphoterin-induced prot 99.1 1.7E-10 5.7E-15 120.2 11.3 101 457-561 21-123 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.1 3.5E-10 1.2E-14 108.7 12.1 108 454-561 57-164 (220)
118 2ell_A Acidic leucine-rich nuc 99.1 5.4E-10 1.8E-14 102.4 11.3 129 454-585 24-159 (168)
119 2je0_A Acidic leucine-rich nuc 99.1 5.2E-11 1.8E-15 106.8 4.3 128 478-609 17-148 (149)
120 1dce_A Protein (RAB geranylger 99.0 2.9E-12 1E-16 140.9 -7.0 197 454-688 349-566 (567)
121 2je0_A Acidic leucine-rich nuc 99.0 2.9E-10 1E-14 101.8 7.1 126 454-582 17-149 (149)
122 3sb4_A Hypothetical leucine ri 99.0 1.8E-09 6.3E-14 110.8 13.3 77 600-690 225-305 (329)
123 1dce_A Protein (RAB geranylger 99.0 8.7E-12 3E-16 137.2 -5.0 125 454-583 372-518 (567)
124 3sb4_A Hypothetical leucine ri 99.0 2.9E-09 9.8E-14 109.4 13.5 119 455-579 203-327 (329)
125 1w8a_A SLIT protein; signaling 99.0 1.7E-09 5.8E-14 101.4 10.4 107 455-561 30-137 (192)
126 1a9n_A U2A', U2A'; complex (nu 98.9 1.4E-09 4.7E-14 100.5 7.3 143 23-194 12-154 (176)
127 2wfh_A SLIT homolog 2 protein 98.9 5.8E-09 2E-13 97.7 10.8 107 454-561 31-137 (193)
128 1w8a_A SLIT protein; signaling 98.9 5.1E-09 1.8E-13 98.1 9.6 126 456-585 10-138 (192)
129 2wfh_A SLIT homolog 2 protein 98.9 7.2E-09 2.5E-13 97.0 10.2 124 457-585 13-138 (193)
130 2o6r_A Variable lymphocyte rec 98.9 1.1E-08 3.8E-13 94.4 11.4 106 454-561 28-135 (177)
131 1a9n_A U2A', U2A'; complex (nu 98.9 2E-09 6.7E-14 99.4 6.1 125 455-585 20-152 (176)
132 4b8c_D Glucose-repressible alc 98.8 2.3E-09 8E-14 121.7 5.5 109 494-610 216-325 (727)
133 4b8c_D Glucose-repressible alc 98.8 2.2E-09 7.6E-14 121.9 4.4 113 469-585 215-328 (727)
134 1ds9_A Outer arm dynein; leuci 98.8 1.2E-10 3.9E-15 110.1 -5.5 146 456-607 25-180 (198)
135 4fdw_A Leucine rich hypothetic 98.8 2.8E-07 9.7E-12 96.6 19.2 211 455-691 158-379 (401)
136 4fdw_A Leucine rich hypothetic 98.7 7.8E-07 2.7E-11 93.2 21.7 123 456-585 250-382 (401)
137 2o6r_A Variable lymphocyte rec 98.7 6.3E-08 2.2E-12 89.3 11.3 124 456-585 9-136 (177)
138 4fs7_A Uncharacterized protein 98.7 1.4E-06 4.7E-11 91.7 21.0 93 455-554 298-392 (394)
139 1ds9_A Outer arm dynein; leuci 98.6 4.9E-10 1.7E-14 105.8 -5.7 89 492-584 38-126 (198)
140 3g39_A Variable lymphocyte rec 98.6 1.7E-07 5.7E-12 85.6 9.1 102 456-561 11-113 (170)
141 4fs7_A Uncharacterized protein 98.5 5.7E-06 2E-10 86.9 21.1 206 455-690 163-374 (394)
142 2r9u_A Variable lymphocyte rec 98.5 2.6E-07 8.9E-12 84.7 9.2 100 457-561 15-116 (174)
143 3g39_A Variable lymphocyte rec 98.5 5.1E-07 1.8E-11 82.4 10.0 103 479-585 10-114 (170)
144 2r9u_A Variable lymphocyte rec 98.4 7.2E-07 2.5E-11 81.7 10.2 101 480-585 14-117 (174)
145 3un9_A NLR family member X1; l 98.4 2.7E-08 9.1E-13 103.4 -1.2 106 455-560 73-193 (372)
146 2ra8_A Uncharacterized protein 98.2 9.9E-07 3.4E-11 90.7 5.9 84 473-559 134-228 (362)
147 2ra8_A Uncharacterized protein 98.2 1.5E-06 5E-11 89.4 6.6 59 473-534 167-227 (362)
148 2ifg_A High affinity nerve gro 98.1 4.7E-06 1.6E-10 85.9 9.2 82 455-537 32-114 (347)
149 4gt6_A Cell surface protein; l 98.1 0.00012 4.1E-09 76.8 19.9 104 472-583 282-388 (394)
150 4gt6_A Cell surface protein; l 98.1 0.00025 8.5E-09 74.3 21.8 125 471-610 258-387 (394)
151 2ifg_A High affinity nerve gro 98.1 6.2E-06 2.1E-10 85.0 9.2 102 457-561 11-114 (347)
152 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5.2E-11 78.1 3.3 91 55-151 61-153 (176)
153 3un9_A NLR family member X1; l 98.0 2.2E-06 7.5E-11 88.9 3.9 87 255-347 154-250 (372)
154 3e4g_A ATP synthase subunit S, 97.9 8.8E-06 3E-10 73.1 5.7 89 229-328 62-154 (176)
155 4h09_A Hypothetical leucine ri 97.5 0.0095 3.3E-07 61.7 22.4 14 175-188 64-77 (379)
156 4h09_A Hypothetical leucine ri 97.5 0.017 5.7E-07 59.9 23.3 16 595-610 327-342 (379)
157 1io0_A Tropomodulin; LRR prote 97.1 0.00017 5.7E-09 66.5 2.6 60 526-586 93-164 (185)
158 3rw6_A Nuclear RNA export fact 97.1 0.00012 4E-09 71.2 1.3 80 475-556 167-257 (267)
159 1io0_A Tropomodulin; LRR prote 97.1 0.00027 9.1E-09 65.1 3.7 117 249-372 29-161 (185)
160 3rw6_A Nuclear RNA export fact 96.8 0.00073 2.5E-08 65.5 4.3 14 596-609 246-259 (267)
161 3rfe_A Platelet glycoprotein I 92.9 0.1 3.4E-06 44.3 4.6 51 34-89 12-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 89.7 0.24 8.1E-06 45.2 3.9 93 249-346 34-136 (197)
163 3rfe_A Platelet glycoprotein I 88.9 0.26 9E-06 41.7 3.3 37 288-324 30-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 87.7 1.1 3.8E-05 40.7 6.8 91 227-323 40-136 (197)
165 2lz0_A Uncharacterized protein 24.1 86 0.0029 24.5 4.3 14 132-145 38-51 (100)
166 2lz0_A Uncharacterized protein 22.4 99 0.0034 24.1 4.3 31 54-86 19-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-46 Score=429.06 Aligned_cols=249 Identities=17% Similarity=0.079 Sum_probs=145.2
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 35555555554444444444455555555555544443444444445555555555544444444444445555555555
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcc-----------------------------------------------
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE----------------------------------------------- 567 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~----------------------------------------------- 567 (725)
+|...+.+|..+..+++|++|++++|.....+|
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 554444444444555555555554442110000
Q ss_pred ------------------------cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCc
Q 048826 568 ------------------------EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPE 623 (725)
Q Consensus 568 ------------------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~ 623 (725)
..+.+++|++|++++|+... . .+..+..+++|+.|++++| .....+|..++
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~---ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~ 677 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-Y---IPKEIGSMPYLFILNLGHN-DISGSIPDEVG 677 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-C---CCGGGGGCTTCCEEECCSS-CCCSCCCGGGG
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccc-c---CCHHHhccccCCEEeCcCC-ccCCCCChHHh
Confidence 12234788999999996532 2 2356888999999999983 44557787764
Q ss_pred ccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCCchhHH----hh
Q 048826 624 DVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCPLIEE----KC 699 (725)
Q Consensus 624 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~----~~ 699 (725)
.+++|+.|++++|+....+|..+..+++|+.|++++|+....+|..+.+.++....+.++|.|.. .|
T Consensus 678 ---------~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 678 ---------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp ---------GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred ---------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCC
Confidence 67899999999987777899988999999999999987777788877666666666667665433 47
Q ss_pred hccCCcccccccccceEE
Q 048826 700 RKDGGQYWDLLTHIPYAR 717 (725)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~ 717 (725)
...+.++|++++|++.++
T Consensus 749 ~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 749 DPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CSCC--------------
T ss_pred CCCccCCCCCCCCccccC
Confidence 778889999999998765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-41 Score=393.18 Aligned_cols=576 Identities=16% Similarity=0.089 Sum_probs=402.3
Q ss_pred CCcceEEEeccCCCC----CCCCcCCCCCCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccc--cccCCC
Q 048826 30 KNLKQFCISGYGGTK----FPTWLGDSSFSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGS--EFYGND 102 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~--~~~~~~ 102 (725)
.+++.|++++++... +|..+.. +++|+.++++.+ .+..+|. ++.+++|++|++++|..-..++. .+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~--L~~L~~l~~~~~-~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l---- 122 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLS--LTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL---- 122 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTT--CTTCCEEECTTS-CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGG----
T ss_pred CcEEEEECCCCCcCCccCccChhHhc--cCcccccCCcCC-CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHH----
Confidence 467777777666533 4444433 666777776665 3444545 78888888888888774444554 22
Q ss_pred CCCCCCCcceeeecccccccccccCCCCCCC-CCCCCccEEEeccCcCccccc------CCCCCcceeeeeccChhh-hh
Q 048826 103 SSTPFPCLETLRFEDMEEWEDWIPHGSSQGV-EGFPKLRELHVIRCSKLQGTF------PEHLPALEMLAIEKCEEL-LA 174 (725)
Q Consensus 103 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~------p~~l~~L~~L~l~~~~~l-~~ 174 (725)
..+++|++|+++++ .+.... +..+ ..+++|++|++++| .+++.. ...+++|++|++++|... ..
T Consensus 123 --~~l~~L~~L~Ls~n-~l~~~~----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 194 (768)
T 3rgz_A 123 --GSCSGLKFLNVSSN-TLDFPG----KVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDV 194 (768)
T ss_dssp --GGCTTCCEEECCSS-EEECCS----SCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCC
T ss_pred --hCCCCCCEEECcCC-ccCCcC----CHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccC
Confidence 33777888888875 333322 2333 66788888888877 454333 245677888888877633 22
Q ss_pred hccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCC--CCCccceeeeccccchhHHhhhhhhhh
Q 048826 175 SITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKP--RLPKLEELEINDMKEQTYIWKSHNELL 252 (725)
Q Consensus 175 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~ 252 (725)
.+..+++|++|++++|.... .++. .+++|+.|.+.++.-. ...+..+
T Consensus 195 ~~~~l~~L~~L~Ls~n~l~~---------------------------~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l 243 (768)
T 3rgz_A 195 DVSRCVNLEFLDVSSNNFST---------------------------GIPFLGDCSALQHLDISGNKLS----GDFSRAI 243 (768)
T ss_dssp BCTTCTTCCEEECCSSCCCS---------------------------CCCBCTTCCSCCEEECCSSCCC----SCHHHHT
T ss_pred CcccCCcCCEEECcCCcCCC---------------------------CCcccccCCCCCEEECcCCcCC----CcccHHH
Confidence 34677888888888876332 1111 2445555555544321 1234456
Q ss_pred hhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCC-CCCcEEEeecCCCccccC-
Q 048826 253 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSL-SSLREIEIYKCSSLVSFP- 330 (725)
Q Consensus 253 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~- 330 (725)
..+++|++|++++|.....++.. .+ ++|++|++++|.+.+.+|..+... ++|++|++++|.....++
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~-------~l----~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPL-------PL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCC-------CC----TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred hcCCCCCEEECCCCcccCccCcc-------cc----CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 88899999999997544333321 22 789999999998877888887664 899999999986443443
Q ss_pred CCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCccccccc-c-cccccceEEeecCCCccccccccccc
Q 048826 331 EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV-Q-LPRSLKRLVILNCDNIRTLTMEEGIQ 408 (725)
Q Consensus 331 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~-~~~~L~~L~l~~~~~l~~~~~~~~~~ 408 (725)
.++.+++|++|++++|.....++.... ..+++|++|++++|.....++.. . ..++|+.|+++++.....++....
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~-- 389 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC-- 389 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT--
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh--
Confidence 345588999999999876556665421 34588999999888544344433 2 224889999888754333221100
Q ss_pred cCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCC
Q 048826 409 SSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNC 488 (725)
Q Consensus 409 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 488 (725)
....++|++|+++++. +.. ..|..+.. + ++|+.|++++|...+.+|..++.+++|+.|++++|
T Consensus 390 -----~~~~~~L~~L~L~~n~-l~~-----~~p~~l~~-----l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 390 -----QNPKNTLQELYLQNNG-FTG-----KIPPTLSN-----C-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp -----CSTTCCCCEEECCSSE-EEE-----ECCGGGGG-----C-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred -----hcccCCccEEECCCCc-ccc-----ccCHHHhc-----C-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 0113469999988752 222 12222222 1 47999999999998899999999999999999998
Q ss_pred CCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcc-
Q 048826 489 ENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE- 567 (725)
Q Consensus 489 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~- 567 (725)
.....+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|.++..+++|++|++++|.....++
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 8777889999999999999999998888899999999999999999999888999999999999999999996544444
Q ss_pred cCCCcccccceecccchhhHHHHhh-------------------------------------------------------
Q 048826 568 EDGLPTNLHSLWIEDNMEIWKSMIE------------------------------------------------------- 592 (725)
Q Consensus 568 ~~~~~~~L~~L~l~~n~~~~~~~~~------------------------------------------------------- 592 (725)
..+.+++|++|++++|+... .++.
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHcCCCCCCEEECCCCccCC-cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 34567999999999996531 0000
Q ss_pred ------------ccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcC
Q 048826 593 ------------RGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQN 660 (725)
Q Consensus 593 ------------~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~ 660 (725)
.+..+..+++|+.|++++| .....+|..++ .+++|+.|++++|.....+|..+..+++
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~---------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIG---------SMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGG---------GCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred ccccccceecccCchhhhccccccEEECcCC-cccccCCHHHh---------ccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 0113445678999999984 44557777764 6899999999997766799999999999
Q ss_pred CCeEeccCCCCCcccCCC-CCcccccEEEecCCc
Q 048826 661 LTSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCP 693 (725)
Q Consensus 661 L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 693 (725)
|+.|++++|.....+|.. +.+++|++|++++++
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999999997655566654 236889999999975
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-36 Score=343.41 Aligned_cols=562 Identities=16% Similarity=0.096 Sum_probs=343.4
Q ss_pred CCcceEEEeccCCCCCCCC-cCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPTW-LGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP 106 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 106 (725)
+++++|+++++....+|.. +.. +++|++|++++| .+..+++ ++.+++|++|++++|. +..++...+ ..
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-----~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTF-----AF 95 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTT-----TT
T ss_pred CCCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc-cCccChhhh-----cc
Confidence 7899999999998877653 443 889999999998 6666644 8899999999999986 788876533 33
Q ss_pred CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCC---CCCcceeeeeccChhh---hhh--ccC
Q 048826 107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPE---HLPALEMLAIEKCEEL---LAS--ITC 178 (725)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l---~~~--~~~ 178 (725)
+++|++|+++++ ++.+.. +..+..+++|++|++++| .+++..|. .+++|++|++++|... ... ...
T Consensus 96 l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 96 CTNLTELHLMSN-SIQKIK----NNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp CTTCSEEECCSS-CCCCCC----SCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred CCCCCEEECCCC-ccCccC----hhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 889999999986 455542 456788999999999988 55544443 4678999999887632 222 235
Q ss_pred CCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCC
Q 048826 179 LPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSL 258 (725)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 258 (725)
+++|+.|++++|......... -..+++|+.|.+.++............. ...++|
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~~~l~~~~~~~~~~~-l~~~~L 224 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGC------------------------FHAIGRLFGLFLNNVQLGPSLTEKLCLE-LANTSI 224 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTG------------------------GGGSSEECEEECTTCCCHHHHHHHHHHH-HTTSCC
T ss_pred cccccEEECCCCcccccChhh------------------------hhhhhhhhhhhccccccChhhHHHHHHH-hhhccc
Confidence 688999999988644322110 0124455556555543322211111111 134788
Q ss_pred cEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC-CCCCCCC
Q 048826 259 KRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP-EVALPSK 337 (725)
Q Consensus 259 ~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~ 337 (725)
++|+++++ .++.+.+.. +..+. .++|++|++++|.+.+..+..++.+++|++|++++|......+ .+..+++
T Consensus 225 ~~L~L~~n-~l~~~~~~~----~~~l~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 225 RNLSLSNS-QLSTTSNTT----FLGLK--WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp CEEECTTS-CCCEECTTT----TGGGG--GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred cEEEccCC-cccccChhH----hhccC--cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 99999885 444443322 22220 0358999999988876677788888999999999886433333 3455888
Q ss_pred CceEEeeccCccc-----ccccc--cccCCCCcccEEEeeccCCccccccc--ccccccceEEeecCCCccccccccccc
Q 048826 338 LKKIQFRECDALK-----LLPEA--WMSDTNSSLEILSIWVCHSLTYLAGV--QLPRSLKRLVILNCDNIRTLTMEEGIQ 408 (725)
Q Consensus 338 L~~L~l~~~~~~~-----~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~ 408 (725)
|+.|+++++.... .++.. ..-..+++|++|++++|.. ..+... ...++|+.|++.++..
T Consensus 298 L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~----------- 365 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSLSNSFT----------- 365 (680)
T ss_dssp CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCCCTTTTTTCTTCCEEECTTCBS-----------
T ss_pred ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCCChhHhccccCCcEEECCCCch-----------
Confidence 8888888764322 11110 0112346677777766632 222211 2234444444444321
Q ss_pred cCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCC
Q 048826 409 SSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNC 488 (725)
Q Consensus 409 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 488 (725)
.+.. .+...+... . .++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 366 ---------------------~~~~-l~~~~f~~~------~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 366 ---------------------SLRT-LTNETFVSL------A--HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp ---------------------CCCE-ECTTTTGGG------T--TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ---------------------hhhh-cchhhhccc------c--cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 0111 111111100 0 024777777777766666667777777777777776
Q ss_pred CCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCc--cccccccCCCCCcceeecCCCCCCCC
Q 048826 489 ENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRL--EALPKGLHNLTSLQQLTIGKGGELPS 565 (725)
Q Consensus 489 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~ 565 (725)
.....+| ..+.++++|++|++++|......+..+..+++|+.|++++|... ..+|..+..+++|++|++++|. +..
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~ 494 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IAN 494 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCC
T ss_pred cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCc
Confidence 5544454 45666777777777776655555556666777777777777643 4556667777777777777773 333
Q ss_pred ccc--CCCcccccceecccchhhHHHHhh----ccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcE
Q 048826 566 LEE--DGLPTNLHSLWIEDNMEIWKSMIE----RGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTS 639 (725)
Q Consensus 566 ~~~--~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 639 (725)
++. ...+++|++|++++|......... ....+..+++|+.|++++ +.+..+|... +..+++|+.
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~--------~~~l~~L~~ 564 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEV--------FKDLFELKI 564 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTT--------TTTCTTCCE
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHH--------cccccCcce
Confidence 322 334577777777777543210000 001256677777777777 3444555542 235677777
Q ss_pred EEeccCccccccccc-ccCCcCCCeEeccCCCCCcccCCCC---CcccccEEEecCCc
Q 048826 640 LWISNFPNLERLSSS-IVDLQNLTSLYLLDCPKLRYFPEKG---LPSSLLQLHIYRCP 693 (725)
Q Consensus 640 L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~l~~c~ 693 (725)
|++++ +.++.+|.. +..+++|+.|++++| .++.+++.. .+++|+.|+++++|
T Consensus 565 L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 565 IDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp EECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred eECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 77777 456666653 356777777777774 555555432 24677777777765
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-35 Score=338.19 Aligned_cols=540 Identities=16% Similarity=0.135 Sum_probs=378.7
Q ss_pred cCCCCCCcceEEEeccCCCCC-CCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCC
Q 048826 25 MLKPHKNLKQFCISGYGGTKF-PTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGN 101 (725)
Q Consensus 25 ~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 101 (725)
+|..+++|++|+++++....+ |..+.. +++|++|++++| .+..+|. ++.+++|++|++++|. +..+++..+
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-- 117 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQK--LPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPF-- 117 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHH--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTT--
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhc--ccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHc--
Confidence 577889999999999988776 444544 899999999998 7888886 9999999999999997 777776543
Q ss_pred CCCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCC-----CCCcceeeeeccChhh---h
Q 048826 102 DSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPE-----HLPALEMLAIEKCEEL---L 173 (725)
Q Consensus 102 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~-----~l~~L~~L~l~~~~~l---~ 173 (725)
..+++|++|+++++ .+.... +..+..+++|++|++++| .+++..+. .+++|++|++++|... .
T Consensus 118 ---~~l~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 118 ---VKQKNLITLDLSHN-GLSSTK----LGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ---TTCTTCCEEECCSS-CCSCCC----CCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ---cccCCCCEEECCCC-cccccC----chhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccCh
Confidence 34899999999996 455443 455688999999999998 55533222 3478999999998632 4
Q ss_pred hhccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhh
Q 048826 174 ASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQ 253 (725)
Q Consensus 174 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 253 (725)
..+..+++|+.+.+.++......... .+. . ....+|+.|.+.++.-.. ..+..+.
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~---------~~~----------~--l~~~~L~~L~L~~n~l~~----~~~~~~~ 243 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEK---------LCL----------E--LANTSIRNLSLSNSQLST----TSNTTFL 243 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHH---------HHH----------H--HTTSCCCEEECTTSCCCE----ECTTTTG
T ss_pred hhhhhhhhhhhhhccccccChhhHHH---------HHH----------H--hhhccccEEEccCCcccc----cChhHhh
Confidence 56778899999999887632100000 000 0 013667777777654321 2233445
Q ss_pred hcC--CCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCcc----
Q 048826 254 DIC--SLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLV---- 327 (725)
Q Consensus 254 ~~~--~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~---- 327 (725)
.++ +|++|++++| .++.+++.. +..+ ++|++|++++|.+.+..+..+..+++|++|++++|....
T Consensus 244 ~l~~~~L~~L~Ls~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYN-NLNVVGNDS----FAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp GGGGSCCCEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred ccCcCCCCEEECCCC-CcCccCccc----ccCc----ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 554 5999999996 466555432 4444 899999999999988888899999999999999764221
Q ss_pred -ccC-----CCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCC-cccccccccccccceEEeecCCCccc
Q 048826 328 -SFP-----EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHS-LTYLAGVQLPRSLKRLVILNCDNIRT 400 (725)
Q Consensus 328 -~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~L~~L~l~~~~~l~~ 400 (725)
.++ .+..+++|++|++++|......+..+ ..+++|++|++++|.. ...++...+.
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~~~~~~l~~~~f~---------------- 376 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TGLINLKYLSLSNSFTSLRTLTNETFV---------------- 376 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TTCTTCCEEECTTCBSCCCEECTTTTG----------------
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHh--ccccCCcEEECCCCchhhhhcchhhhc----------------
Confidence 222 34558999999999997544333333 3458999999998752 2222211110
Q ss_pred cccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhh-hhhcCCCC
Q 048826 401 LTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIA-ERLDNNTS 479 (725)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~ 479 (725)
....+.|++|+++++ ++.. .....+.. + ++|+.|++++|.+.+.++ ..+..+++
T Consensus 377 -------------~~~~~~L~~L~L~~n-~l~~-~~~~~~~~---------l-~~L~~L~L~~N~l~~~~~~~~~~~l~~ 431 (680)
T 1ziw_A 377 -------------SLAHSPLHILNLTKN-KISK-IESDAFSW---------L-GHLEVLDLGLNEIGQELTGQEWRGLEN 431 (680)
T ss_dssp -------------GGTTSCCCEEECTTS-CCCE-ECTTTTTT---------C-TTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred -------------ccccCcCceEECCCC-CCCe-EChhhhhC---------C-CCCCEEeCCCCcCccccCcccccCccc
Confidence 000022555555543 2222 11111111 1 468999999988776554 67888999
Q ss_pred ccEEEecCCCCcccccccccCCCcccEEEeccCCCc--cccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826 480 LEYINISNCENLKILPSGLHNLRQLQEITIQRCGNL--ESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI 557 (725)
Q Consensus 480 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 557 (725)
|+.|++++|......+..+..+++|+.|++++|... ..+|..+..+++|+.|++++|......+..+..+++|++|++
T Consensus 432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 511 (680)
T 1ziw_A 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511 (680)
T ss_dssp CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeC
Confidence 999999997655555667788899999999987643 567778888899999999998865545556788999999999
Q ss_pred CCCCCCCCcc----------cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCccccc
Q 048826 558 GKGGELPSLE----------EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRL 627 (725)
Q Consensus 558 ~~~~~l~~~~----------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~ 627 (725)
++|. +..++ ....+++|++|++++|... .++. ..+..+++|+.|++++ +.+..+|....
T Consensus 512 s~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~--~~~~~l~~L~~L~Ls~--N~l~~l~~~~~---- 580 (680)
T 1ziw_A 512 QHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPV--EVFKDLFELKIIDLGL--NNLNTLPASVF---- 580 (680)
T ss_dssp CSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCT--TTTTTCTTCCEEECCS--SCCCCCCTTTT----
T ss_pred CCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCH--HHcccccCcceeECCC--CCCCcCCHhHh----
Confidence 9984 32221 1345689999999999654 2222 4578899999999988 56667776542
Q ss_pred CcccCCCCCCcEEEeccCccccccccc-cc-CCcCCCeEeccCCCCC
Q 048826 628 GTTLPLPASLTSLWISNFPNLERLSSS-IV-DLQNLTSLYLLDCPKL 672 (725)
Q Consensus 628 ~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~-~~~~L~~L~l~~c~~l 672 (725)
..+++|+.|++++| .++.++.. +. .+++|+.|++++||-.
T Consensus 581 ----~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 581 ----NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp ----TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred ----CCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 36799999999995 56666643 34 6899999999997754
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-34 Score=324.69 Aligned_cols=422 Identities=16% Similarity=0.120 Sum_probs=220.3
Q ss_pred cceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCC
Q 048826 32 LKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPC 109 (725)
Q Consensus 32 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 109 (725)
.+.++.++.+...+|..+ .+++++|++++| .++.+++ ++.+++|++|++++|. ++.+++..++ .+++
T Consensus 13 ~~~~~c~~~~l~~ip~~~----~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~-----~l~~ 81 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI----PSSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWH-----GLHH 81 (606)
T ss_dssp TTEEECTTSCCSSCCTTS----CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-----TCTT
T ss_pred CCceEccCCCcccCCCCC----CCCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhh-----chhh
Confidence 356777777788888655 368899999887 6777765 8888999999999886 7777654432 3788
Q ss_pred cceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccC----CCCCcceeeeeccChh----hhhhccCCCc
Q 048826 110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFP----EHLPALEMLAIEKCEE----LLASITCLPA 181 (725)
Q Consensus 110 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~----l~~~~~~~~~ 181 (725)
|++|+++++ .++... +..+..+++|++|++++| .++ .++ ..+++|++|++++|.. ++..++.+++
T Consensus 82 L~~L~Ls~n-~l~~~~----p~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 82 LSNLILTGN-PIQSFS----PGSFSGLTSLENLVAVET-KLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp CCEEECTTC-CCCCCC----TTSSTTCTTCCEEECTTS-CCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred cCEeECCCC-cccccC----hhhcCCcccCCEEEccCC-ccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 888888885 455543 566788888888888888 444 222 2345566666665542 1344566666
Q ss_pred ccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCC-CcE
Q 048826 182 LCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICS-LKR 260 (725)
Q Consensus 182 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-L~~ 260 (725)
|++|++++|......... + ..+..++. +++
T Consensus 155 L~~L~Ls~n~l~~~~~~~---------------------------~----------------------~~l~~L~~~l~~ 185 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITVND---------------------------L----------------------QFLRENPQVNLS 185 (606)
T ss_dssp CCEEECCSSCCCEECTTT---------------------------T----------------------HHHHHCTTCCCE
T ss_pred CCEEEccCCcceecChhh---------------------------h----------------------hhhhccccccce
Confidence 666666665433211100 0 01122222 457
Q ss_pred EEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc-ccccccCCCCCCcEEEeecCCCc--cccCC--CCCC
Q 048826 261 LTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV-KLPQSSLSLSSLREIEIYKCSSL--VSFPE--VALP 335 (725)
Q Consensus 261 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~--~~~~~--~~~l 335 (725)
|+++++ .++.+++..+ .. .+|+.|++++|...+ .++..++++++|+.+++...... ..+.. ...+
T Consensus 186 L~l~~n-~l~~~~~~~~-----~~----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 186 LDMSLN-PIDFIQDQAF-----QG----IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp EECTTC-CCCEECTTTT-----TT----CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred eeccCC-CcceeCcccc-----cC----ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 777774 4555554321 11 367777777776642 55666777777777766532211 11100 0011
Q ss_pred C-----CCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccC
Q 048826 336 S-----KLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSS 410 (725)
Q Consensus 336 ~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 410 (725)
. +++.+++.....+......+ ..+++|+.|++.++. +..++.....++|+.|++.+|.. ..++.
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~------- 324 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPT------- 324 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCC-------
T ss_pred hhhhhccHhheecccccccccccccc--ccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-ccccc-------
Confidence 1 23333332222222211111 233566666666553 23333333344555555555443 22220
Q ss_pred CCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhh--hhhhhcCCCCccEEEecCC
Q 048826 411 SSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLES--IAERLDNNTSLEYINISNC 488 (725)
Q Consensus 411 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~ 488 (725)
+..++|++|+++++..+.. +....+ ++|+.|++++|...+. ++..+..+++|+.|++++|
T Consensus 325 ----~~l~~L~~L~l~~n~~~~~-~~~~~l-------------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 325 ----LDLPFLKSLTLTMNKGSIS-FKKVAL-------------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp ----CCCSSCCEEEEESCSSCEE-CCCCCC-------------TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred ----CCCCccceeeccCCcCccc-hhhccC-------------CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 0123355555555433322 111111 2355555555544333 1344445555555555553
Q ss_pred CCcccccccccCCCcccEEEeccCCCccccC-CCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCC
Q 048826 489 ENLKILPSGLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKG 560 (725)
Q Consensus 489 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 560 (725)
. +..+|..+..+++|++|++++|......+ ..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 387 ~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 387 G-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp S-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred c-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 2 33344444555555555555544333333 23444555555555555544444444555555555555555
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.4e-34 Score=320.29 Aligned_cols=408 Identities=15% Similarity=0.098 Sum_probs=240.5
Q ss_pred CCcceEEEeccCCCCC-CCCcCCCCCCCccEEEEecCCCCCcC-CC-CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKF-PTWLGDSSFSNLVILKFEDCGMCTTW-PS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP 106 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l-~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 106 (725)
+++++|+++++.+..+ |..+.. +++|++|++++| .+..+ |. ++.+++|++|++++|. +..+++..+ ..
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSR--LINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETAL-----SG 103 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTT--CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTT-----SS
T ss_pred CcCcEEEccCCccCcCChhHhcc--CccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhh-----cc
Confidence 5889999999998876 445544 899999999998 66666 44 8999999999999987 655544333 33
Q ss_pred CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC--CCCcceeeeeccChhh---hhhccCCC
Q 048826 107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE--HLPALEMLAIEKCEEL---LASITCLP 180 (725)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~--~l~~L~~L~l~~~~~l---~~~~~~~~ 180 (725)
+++|++|+++++ .+.... +..+..+++|++|++++| .+++ ..|. .+++|++|++++|... ...++.++
T Consensus 104 l~~L~~L~L~~n-~i~~l~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 104 PKALKHLFFIQT-GISSID----FIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp CTTCCEEECTTS-CCSCGG----GSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred cccccEeecccc-CcccCC----cchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 889999999985 455543 355688999999999988 4442 2232 2678999999988633 45677888
Q ss_pred ccc--EEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCC
Q 048826 181 ALC--KLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSL 258 (725)
Q Consensus 181 ~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 258 (725)
+|+ .|++++|......... .....|+.|.+.++..... .+..+.++
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~-------~~~~l~~~ 225 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGA-------------------------FDSAVFQSLNFGGTQNLLV-------IFKGLKNS 225 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTT-------------------------TTTCEEEEEECTTCSCHHH-------HHHHTTTC
T ss_pred ccceeEEecCCCccCccChhH-------------------------hhhccccccccCCchhHHH-------Hhhhcccc
Confidence 888 7888888765543221 1134566777666653222 23444444
Q ss_pred cE--EEEccCCCcc--cchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC-CCC
Q 048826 259 KR--LTIDSCPKLQ--SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP-EVA 333 (725)
Q Consensus 259 ~~--L~l~~~~~l~--~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~ 333 (725)
+. +.+..+..+. .+... .+..+.. .+|+.|++++|.+.+..+..++.+++|++|++++|. ++.+| .+.
T Consensus 226 ~l~~l~~~~~~~~~~~~i~~~----~~~~l~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~ 298 (606)
T 3t6q_A 226 TIQSLWLGTFEDMDDEDISPA----VFEGLCE--MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV 298 (606)
T ss_dssp EEEEEECCCCTTSCCCCCCGG----GGGGGGG--SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCC
T ss_pred chhheechhhccccccccChh----Hhchhhc--CceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhc
Confidence 43 3333332222 12211 1222211 378888888888766666668888888888888875 44554 344
Q ss_pred CCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCc
Q 048826 334 LPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSR 413 (725)
Q Consensus 334 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 413 (725)
.+++|++|++++|......+..+ ..+++|++|++.+|.....++.
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~--------------------------------- 343 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIKGNTKRLELGT--------------------------------- 343 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEECCSCSSCCBCCS---------------------------------
T ss_pred ccccCCEEECccCCcCcCchhhh--hccCcCCEEECCCCCcccccch---------------------------------
Confidence 46777777777776333323222 1235555555554431111110
Q ss_pred ccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhh--hhhhcCCCCccEEEecCCCCc
Q 048826 414 RYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESI--AERLDNNTSLEYINISNCENL 491 (725)
Q Consensus 414 ~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 491 (725)
..+.. + ++|++|++++|...+.. +..+..+++|++|++++|...
T Consensus 344 ------------------------~~~~~---------l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 344 ------------------------GCLEN---------L-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp ------------------------STTTT---------C-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred ------------------------hhhhc---------c-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 00000 0 23555555555444333 344555556666666554433
Q ss_pred ccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCccccccccCCCCCcceeecCCC
Q 048826 492 KILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKG 560 (725)
Q Consensus 492 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 560 (725)
...|..+..+++|++|++++|......+. .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 33344555555666666655544333332 2445555666666665544444445555555666665555
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-34 Score=323.28 Aligned_cols=518 Identities=15% Similarity=0.100 Sum_probs=323.4
Q ss_pred ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826 33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL 110 (725)
Q Consensus 33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 110 (725)
+.++.++.+...+|..+. .++++|++++| .++.+++ ++.+++|++|++++|. +..+.+..+ ..+++|
T Consensus 15 ~~~~c~~~~l~~iP~~l~----~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-----~~l~~L 83 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP----NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTF-----QSQHRL 83 (606)
T ss_dssp TEEECTTSCCSSCCTTSC----TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTT-----TTCTTC
T ss_pred ceEECCCCCcccCcCCCC----CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeChhhc-----cCcccc
Confidence 457777778888887664 47999999998 7888754 9999999999999997 666655433 338899
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccC---CCCCcceeeeeccChhh---hhhccCCCcccE
Q 048826 111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFP---EHLPALEMLAIEKCEEL---LASITCLPALCK 184 (725)
Q Consensus 111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l---~~~~~~~~~L~~ 184 (725)
++|+++++ .+.... +..+..+++|++|++++| .+++.-| ..+++|++|++++|... ...+..+++|+.
T Consensus 84 ~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 84 DTLVLTAN-PLIFMA----ETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp CEEECTTC-CCSEEC----TTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred CeeeCCCC-cccccC----hhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 99999985 455543 556788999999999988 4542212 23445555555554422 122223455555
Q ss_pred EEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCc--EEE
Q 048826 185 LKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLK--RLT 262 (725)
Q Consensus 185 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~--~L~ 262 (725)
|++++|.... ..+..+..+++|+ .|+
T Consensus 158 L~L~~n~l~~----------------------------------------------------~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 158 LDFQNNAIHY----------------------------------------------------LSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp EECCSSCCCE----------------------------------------------------ECHHHHHTTTTCCSEEEE
T ss_pred EEcccCcccc----------------------------------------------------cChhhhhhhcccceeEEe
Confidence 5555544322 2223345555565 556
Q ss_pred EccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcE--EEeecCCCccc--cCC--CCC--
Q 048826 263 IDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLRE--IEIYKCSSLVS--FPE--VAL-- 334 (725)
Q Consensus 263 l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~--L~L~~~~~~~~--~~~--~~~-- 334 (725)
++++ .++.+++..+ . . .+|+.|++++|... +..+..+.+++. +.+........ +.. +..
T Consensus 186 l~~n-~l~~~~~~~~----~-~----~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 186 LNGN-DIAGIEPGAF----D-S----AVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp CTTC-CCCEECTTTT----T-T----CEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred cCCC-ccCccChhHh----h-h----ccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 6553 3343333211 1 1 35666666655422 222222222222 22222111110 000 000
Q ss_pred CCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCccccccc-ccccccceEEeecCCCccccccccccccCCCc
Q 048826 335 PSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV-QLPRSLKRLVILNCDNIRTLTMEEGIQSSSSR 413 (725)
Q Consensus 335 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 413 (725)
..+|+.|+++++.. ..++.... ..+++|++|++++|. ++.++.. ...++
T Consensus 253 ~~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~-l~~lp~~l~~l~~--------------------------- 302 (606)
T 3t6q_A 253 EMSVESINLQKHYF-FNISSNTF-HCFSGLQELDLTATH-LSELPSGLVGLST--------------------------- 302 (606)
T ss_dssp GSEEEEEECTTCCC-SSCCTTTT-TTCTTCSEEECTTSC-CSCCCSSCCSCTT---------------------------
T ss_pred cCceeEEEeecCcc-CccCHHHh-ccccCCCEEeccCCc-cCCCChhhccccc---------------------------
Confidence 11566666666643 32322211 233566666666653 2222211 12223
Q ss_pred ccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhh-hhcCCCCccEEEecCCCCcc
Q 048826 414 RYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAE-RLDNNTSLEYINISNCENLK 492 (725)
Q Consensus 414 ~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~ 492 (725)
|++|+++++ .+.. .....+ ..+ ++|++|++++|.....++. .+..+++|++|++++|....
T Consensus 303 ------L~~L~l~~n-~l~~-~~~~~~---------~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 303 ------LKKLVLSAN-KFEN-LCQISA---------SNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp ------CCEEECTTC-CCSB-GGGGCG---------GGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred ------CCEEECccC-CcCc-Cchhhh---------hcc-CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 333333332 1111 000001 111 3599999999887755543 48899999999999976554
Q ss_pred cc--cccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc-ccCCCCCcceeecCCCCCCCCccc-
Q 048826 493 IL--PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK-GLHNLTSLQQLTIGKGGELPSLEE- 568 (725)
Q Consensus 493 ~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~- 568 (725)
.. +..+..+++|++|++++|......+..+..+++|++|++++|......+. .+..+++|++|++++|......+.
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 43 66788999999999999887777788888999999999999986655554 478999999999999954333222
Q ss_pred CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccc
Q 048826 569 DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL 648 (725)
Q Consensus 569 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 648 (725)
...+++|++|++++|+.....+ ..+..+..+++|+.|++++| ......|..+ ..+++|+.|++++|...
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFC-DLSSIDQHAF---------TSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTS-CCCEECTTTT---------TTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCC-ccCccChhhh---------ccccCCCEEECCCCccC
Confidence 4457999999999997643111 11245788999999999995 3333334444 36899999999998766
Q ss_pred ccccccccCCcCCCeEeccCCCCCcccCCCCC--cccccEEEecCCc
Q 048826 649 ERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQLHIYRCP 693 (725)
Q Consensus 649 ~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 693 (725)
...|..+..+++| .|++++| .++.+++..+ +++|+.|+++++|
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 6667788899999 9999996 4556555433 5889999999987
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-33 Score=313.70 Aligned_cols=476 Identities=15% Similarity=0.119 Sum_probs=313.0
Q ss_pred CCcceEEEeccCCCCCCC-CcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPT-WLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP 106 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 106 (725)
+++++|+++++....++. .+.. +++|++|++++| .+..+++ ++.+++|++|++++|. +..+++..+ ..
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~-----~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSN--FSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSF-----SG 102 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSS-----TT
T ss_pred CCcCEEECCCCCcCEeChhhccC--CccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhc-----CC
Confidence 899999999999887765 4544 899999999998 7887754 8999999999999998 777755433 34
Q ss_pred CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC---CCCcceeeeeccChhh---hhhccCC
Q 048826 107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE---HLPALEMLAIEKCEEL---LASITCL 179 (725)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l---~~~~~~~ 179 (725)
+++|++|+++++ .+.... +..+..+++|++|++++| .+++ .+|. .+++|++|++++|... ...++.+
T Consensus 103 l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 103 LTSLENLVAVET-KLASLE----SFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp CTTCCEEECTTS-CCCCSS----SSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred cccCCEEEccCC-cccccc----ccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 899999999996 455443 355789999999999998 4542 4554 4689999999998633 2334444
Q ss_pred Ccc----cEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhc
Q 048826 180 PAL----CKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDI 255 (725)
Q Consensus 180 ~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 255 (725)
++| ..|++++|....+.... ....+|+.|.+.++.... ...+..+..+
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~~~-------------------------~~~~~L~~L~L~~n~~~~---~~~~~~~~~l 228 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQDQA-------------------------FQGIKLHELTLRGNFNSS---NIMKTCLQNL 228 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECTTT-------------------------TTTCEEEEEEEESCCSCH---HHHHHHHHTT
T ss_pred hccccccceeeccCCCcceeCccc-------------------------ccCceeeeeeccCCccch---hHHHHHhccc
Confidence 444 48999999866544332 012256666666554322 2445567889
Q ss_pred CCCcEEEEccC-----CCcccchhhhhhHHHhhhhhccCCccEEEE-ecccCccccccccCCCCCCcEEEeecCCCcccc
Q 048826 256 CSLKRLTIDSC-----PKLQSLVAEEEKDQQQQLCELSCRLEYLRL-RYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSF 329 (725)
Q Consensus 256 ~~L~~L~l~~~-----~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 329 (725)
+.|+.+++... ..+..+... .+..+.. -.++.+++ ..+...+.+|. +..+++|+.|++++|. ++.+
T Consensus 229 ~~L~~l~l~~~~~~~~~~l~~~~~~----~~~~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~l 300 (606)
T 3vq2_A 229 AGLHVHRLILGEFKDERNLEIFEPS----IMEGLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS-IKYL 300 (606)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCGG----GGTTGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC-CCCC
T ss_pred cccccccccccccccCCcccccChH----Hhhhhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCcc-chhh
Confidence 99999887542 112222221 1222222 25778888 45555556665 8899999999999986 5667
Q ss_pred CCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCcccccccccccc
Q 048826 330 PEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQS 409 (725)
Q Consensus 330 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 409 (725)
+.+..+++|++|++++|.. +.+|.. .+++|++|++.+|.....+ .....++|+.|+++++.
T Consensus 301 ~~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~------------- 361 (606)
T 3vq2_A 301 EDVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA------------- 361 (606)
T ss_dssp CCCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-------------
T ss_pred hhccccccCCEEEcccccC-cccccC----CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-------------
Confidence 7677788999999999985 666632 5588888888888544433 22233445555544432
Q ss_pred CCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCC
Q 048826 410 SSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCE 489 (725)
Q Consensus 410 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 489 (725)
++. .. ..+.. +..+ ++|++|++++|...+ ++..+..+++|+.|++++|.
T Consensus 362 ---------------------l~~-~~--~~~~~-----~~~~-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 362 ---------------------LSF-SG--CCSYS-----DLGT-NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp ---------------------EEE-EE--ECCHH-----HHCC-SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred ---------------------cCC-Cc--chhhh-----hccC-CcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence 111 00 00010 0111 358888888876544 44667788888888888865
Q ss_pred Cccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcc-ccccccCCCCCcceeecCCCCCCCCcc
Q 048826 490 NLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLE-ALPKGLHNLTSLQQLTIGKGGELPSLE 567 (725)
Q Consensus 490 ~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~ 567 (725)
.....| ..+..+++|++|++++|......|..+..+++|++|++++|.... .+|..+..+++|++|++++|......+
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 544444 467778888888888877777777777788888888888887555 367778888888888888884322211
Q ss_pred c-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 568 E-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 568 ~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
. ...+++|++|++++|+... . .+..+..+++|+.|++++
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~-~---~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLF-L---DSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSC-E---EGGGTTTCTTCCEEECTT
T ss_pred hhhcccccCCEEECCCCcCCC-c---CHHHccCCCcCCEEECCC
Confidence 1 2334555555555554321 0 012344445555555554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-31 Score=306.67 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=79.3
Q ss_pred eEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcc
Q 048826 34 QFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLE 111 (725)
Q Consensus 34 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~ 111 (725)
..+.++++...+|. + .++|++|+|++| .++.+++ ++.+++|++|++++|..+..+++..+ ..+++|+
T Consensus 8 ~~dcs~~~L~~vP~-l----p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f-----~~L~~L~ 76 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-V----LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF-----RNLPNLR 76 (844)
T ss_dssp EEEESCCCSSCCCS-S----CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTT-----SSCTTCC
T ss_pred EEEccCCCCCCCCC-C----CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHh-----cCCCCCC
Confidence 45556666677775 2 467888888887 5666543 78888888888888766666654433 2377777
Q ss_pred eeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCC
Q 048826 112 TLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCK 191 (725)
Q Consensus 112 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~ 191 (725)
+|+++++ ++.... +..+..+++|++|++++| .+++.+|.. ..+..+++|++|++++|.
T Consensus 77 ~L~Ls~N-~l~~~~----p~~~~~l~~L~~L~Ls~n-~l~~~~~~~----------------~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 77 ILDLGSS-KIYFLH----PDAFQGLFHLFELRLYFC-GLSDAVLKD----------------GYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp EEECTTC-CCCEEC----TTSSCSCSSCCCEECTTC-CCSSCCSTT----------------CCCSSCSSCCEEEEESCC
T ss_pred EEECCCC-cCcccC----HhHccCCcccCEeeCcCC-CCCcccccC----------------ccccccCCCCEEECCCCc
Confidence 7777774 444443 456677788888888777 444333321 124555666666666654
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-31 Score=297.20 Aligned_cols=192 Identities=18% Similarity=0.201 Sum_probs=142.5
Q ss_pred CCccEEEEecccchhhhhhhh-cCCCCccEEEecCCCCccccc---ccccCCCcccEEEeccCCCccccC---CCCcCcC
Q 048826 454 PSLKSLSVYGCSKLESIAERL-DNNTSLEYINISNCENLKILP---SGLHNLRQLQEITIQRCGNLESFP---EGGLLCA 526 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~ 526 (725)
++|+.|++++|... .+|..+ ..+++|++|++++|.....+| ..+..+++|++|++++|.. +.++ ..+..++
T Consensus 310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCT
T ss_pred ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCC
Confidence 46999999998765 455544 578999999999977665553 3467889999999999754 3333 3466788
Q ss_pred cCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEE
Q 048826 527 KLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRL 606 (725)
Q Consensus 527 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 606 (725)
+|++|++++|. ++.+|..+..+++|++|++++|. +..++. ..+++|++|++++|... .....+++|++|
T Consensus 388 ~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~-~~~~~L~~L~Ls~N~l~--------~~~~~l~~L~~L 456 (549)
T 2z81_A 388 NLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKT-CIPQTLEVLDVSNNNLD--------SFSLFLPRLQEL 456 (549)
T ss_dssp TCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCT-TSCTTCSEEECCSSCCS--------CCCCCCTTCCEE
T ss_pred CCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccc-hhcCCceEEECCCCChh--------hhcccCChhcEE
Confidence 99999999997 45788888889999999999984 444433 23478999999998643 224578889999
Q ss_pred EeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc-cccccCCcCCCeEeccCCCC
Q 048826 607 TIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL-SSSIVDLQNLTSLYLLDCPK 671 (725)
Q Consensus 607 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~ 671 (725)
++++| .+..+|... .+++|+.|++++|+ ++.+ +..+..+++|+.|++++|+-
T Consensus 457 ~Ls~N--~l~~ip~~~----------~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 457 YISRN--KLKTLPDAS----------LFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp ECCSS--CCSSCCCGG----------GCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred ECCCC--ccCcCCCcc----------cCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCc
Confidence 99884 455677532 57889999999864 4444 44577888899999988763
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=3e-30 Score=300.97 Aligned_cols=500 Identities=13% Similarity=0.052 Sum_probs=336.2
Q ss_pred CCCCcceEEEeccCCCCC-CCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCC
Q 048826 28 PHKNLKQFCISGYGGTKF-PTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSS 104 (725)
Q Consensus 28 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 104 (725)
-++++++|+|+++.+..+ |..+.. +++|++|++++|.....+++ ++.+++|++|++++|. +..+++..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~--l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~----- 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPF--LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAF----- 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSS--CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSS-----
T ss_pred CCCCcCEEECCCCcCCccChhHCcc--cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHc-----
Confidence 458999999999998775 455544 99999999999977778844 9999999999999998 777655443
Q ss_pred CCCCCcceeeecccccccccccCCCCCC--CCCCCCccEEEeccCcCcccccC----CCCCcceeeeeccChhh---hhh
Q 048826 105 TPFPCLETLRFEDMEEWEDWIPHGSSQG--VEGFPKLRELHVIRCSKLQGTFP----EHLPALEMLAIEKCEEL---LAS 175 (725)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l---~~~ 175 (725)
..+++|++|+++++ .+.+.. +.. +..+++|++|++++| .+++..+ ..+++|++|++++|... ...
T Consensus 94 ~~l~~L~~L~Ls~n-~l~~~~----~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 94 QGLFHLFELRLYFC-GLSDAV----LKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp CSCSSCCCEECTTC-CCSSCC----STTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCCcccCEeeCcCC-CCCccc----ccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 34899999999996 454422 222 688999999999998 5543333 34789999999987632 234
Q ss_pred ccCC--CcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCC--CccceeeeccccchhHHhhhhhhh
Q 048826 176 ITCL--PALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRL--PKLEELEINDMKEQTYIWKSHNEL 251 (725)
Q Consensus 176 ~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~L~~L~l~~~~~~~~~~~~~~~~ 251 (725)
+..+ ++|+.|++++|......... . +..+..+ ..|+.|.+.++.-... .+..+
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~----------~----------~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~ 224 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVD----------W----------GKCMNPFRNMVLEILDVSGNGWTVD---ITGNF 224 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCC----------C----------CSSSCTTTTCCBSEEBCSSCCSSTT---TTSGG
T ss_pred cccccCCccceEECCCCccccccccc----------h----------hhcCCccccCceeEEecCCCcCchh---HHHHH
Confidence 4444 78999999988644311110 0 0000011 1366666655432111 22222
Q ss_pred hh--hcCCCcEEEEccCC--------CcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEee
Q 048826 252 LQ--DICSLKRLTIDSCP--------KLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIY 321 (725)
Q Consensus 252 ~~--~~~~L~~L~l~~~~--------~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 321 (725)
.. ...+++.|.+..+. .+...... .+..+ .+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~----~f~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN----TFAGL--ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT----TTTTT--TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred HhhcCcccccceecccccccccccccccCCCChh----hhhcc--ccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 22 22567777776321 11111111 11111 12689999999988877777888899999999999
Q ss_pred cCCCccccC-CCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCccccccc--ccccccceEEeecCCCc
Q 048826 322 KCSSLVSFP-EVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV--QLPRSLKRLVILNCDNI 398 (725)
Q Consensus 322 ~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l 398 (725)
+|......+ .+..+++|++|++++|......+..+ ..+++|+.|++++|. +..++.. ...++|+.|+++++.-
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l- 374 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNAL- 374 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCS-
T ss_pred CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCC-
Confidence 986433323 34558899999999987444434443 345889999999884 4544432 4467888999888642
Q ss_pred cccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhh-hhhhhcCC
Q 048826 399 RTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLES-IAERLDNN 477 (725)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l 477 (725)
..+. ..++|++++++++ +++. + |.. ..+++.|++++|...+. .+..+..+
T Consensus 375 ~~i~-------------~~~~L~~L~l~~N-~l~~-l-----~~~---------~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 375 TTIH-------------FIPSIPDIFLSGN-KLVT-L-----PKI---------NLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp CCCS-------------SCCSCSEEEEESC-CCCC-C-----CCC---------CTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred Cccc-------------CCCCcchhccCCC-Cccc-c-----ccc---------ccccceeecccCccccCchhhhhhcC
Confidence 2222 1345889998874 3333 1 111 13589999999877653 23446689
Q ss_pred CCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCc-----cccCCCCcCcCcCceeeeccccCccccccccCCCCC
Q 048826 478 TSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNL-----ESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTS 551 (725)
Q Consensus 478 ~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 551 (725)
++|+.|++++|......+ ..+..+++|+.|++++|... ...+..+..+++|+.|++++|......+..+..+++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 999999999965443222 23456899999999997654 223445778899999999999866666667899999
Q ss_pred cceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 552 LQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 552 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
|++|++++| .+..++.....++|+.|++++|.... .....+.+|+.|+++++
T Consensus 506 L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~-------~~~~~~~~L~~l~l~~N 557 (844)
T 3j0a_A 506 LRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLA-------PNPDVFVSLSVLDITHN 557 (844)
T ss_dssp CSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCC-------CCSCCCSSCCEEEEEEE
T ss_pred hheeECCCC-CCCccChhhhhccccEEECCCCcCCC-------CChhHhCCcCEEEecCC
Confidence 999999999 55556555555899999999996542 22234568889999884
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=282.94 Aligned_cols=201 Identities=17% Similarity=0.096 Sum_probs=128.1
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc--cccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL--PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
+|+.|++++|......+. ..+++|+.|++++|...... +..+..+++|++|++++|.. ..++..+..+++|++|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLD 402 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEE
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEE
Confidence 478888887766554433 56778888888775433321 45566778888888887653 33444466777888888
Q ss_pred eccccCccccc-cccCCCCCcceeecCCCCCCCCcc-cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 533 ILDCKRLEALP-KGLHNLTSLQQLTIGKGGELPSLE-EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 533 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
+++|......+ ..+..+++|++|++++|......+ ....+++|++|++++|......+ +..+..+++|+.|++++
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTT
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCC
Confidence 88877554444 356778888888888874333222 23345777777777775432111 24567778888888887
Q ss_pred CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc-ccccCCcCCCeEeccCCCCC
Q 048826 611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS-SSIVDLQNLTSLYLLDCPKL 672 (725)
Q Consensus 611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~c~~l 672 (725)
| ......|..++ .+++|+.|++++|. ++.++ ..+..+++|+.|++++|+..
T Consensus 480 n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 480 C-QLEQLSPTAFN---------SLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp S-CCCEECTTTTT---------TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-ccccCChhhhh---------cccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCccc
Confidence 4 22233344432 56788888888854 44444 44667788888888886543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=7.4e-30 Score=286.02 Aligned_cols=477 Identities=16% Similarity=0.122 Sum_probs=279.0
Q ss_pred CCcceEEEeccCCCCCCC-CcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPT-WLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP 106 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 106 (725)
+++++|+++++....++. .+.. +++|++|++++| .++.+++ ++.+++|++|++++|. +..+++..++ .
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-----~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS-----G 98 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTT--CSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-----T
T ss_pred ccccEEEccCCccCccChhHhhC--CCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhc-----C
Confidence 678888888888776643 3433 788888888888 6777754 7888888888888887 7777654433 3
Q ss_pred CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC---CCCcceeeeeccChhh---hhhccCC
Q 048826 107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE---HLPALEMLAIEKCEEL---LASITCL 179 (725)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l---~~~~~~~ 179 (725)
+++|++|+++++ +++... ...+..+++|++|++++| .+++ .+|. .+++|++|++++|... ...++.+
T Consensus 99 l~~L~~L~L~~n-~l~~l~----~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 99 LSSLQKLVAVET-NLASLE----NFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp CTTCCEEECTTS-CCCCST----TCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred cccccccccccc-ccccCC----CccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 788888888885 455442 234678888888888887 4432 2454 3567888888877532 2344455
Q ss_pred Ccc----cEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhc
Q 048826 180 PAL----CKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDI 255 (725)
Q Consensus 180 ~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 255 (725)
++| +.+++++|......... + ...+|+.|.+.+..... ......+..+
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~-----------------------~--~~~~L~~L~l~~n~~~~---~~~~~~~~~l 224 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGA-----------------------F--KEIRLHKLTLRNNFDSL---NVMKTCIQGL 224 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTT-----------------------T--TTCEEEEEEEESCCSCT---THHHHHHHTT
T ss_pred hccchhhhhcccCCCCceecCHHH-----------------------h--ccCcceeEecccccccc---cchhhhhcCc
Confidence 555 67777777655433221 0 11245666555432111 1223445667
Q ss_pred CCCcEEEEccC-----CCcccchhhhhhHHHhhhhhccCCccEEEEecc-cCccccccccCCCCCCcEEEeecCCCcccc
Q 048826 256 CSLKRLTIDSC-----PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYC-KGLVKLPQSSLSLSSLREIEIYKCSSLVSF 329 (725)
Q Consensus 256 ~~L~~L~l~~~-----~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 329 (725)
+.++.+.+... ..+..+.... +..+.. -.++.+++.++ ...+..+..+..+++|++|++++|. ++.+
T Consensus 225 ~~l~~~~l~~~~~~~~~~l~~~~~~~----~~~l~~--l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l 297 (570)
T 2z63_A 225 AGLEVHRLVLGEFRNEGNLEKFDKSA----LEGLCN--LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERV 297 (570)
T ss_dssp TTCEEEEEEEEECCCCSSCEECCTTT----TGGGGG--SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSC
T ss_pred cccceeeeccccccCchhhhhcchhh----hccccc--cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhh
Confidence 77776655421 1222332221 222211 24677778777 4455677778888888999888875 4445
Q ss_pred CC-CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccc
Q 048826 330 PE-VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQ 408 (725)
Q Consensus 330 ~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 408 (725)
+. ...+ +|++|++++|.. ..++. ..+++|+.|++.+|.....++. ..+++|+.|++.++......
T Consensus 298 ~~~~~~~-~L~~L~l~~n~~-~~l~~----~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~------- 363 (570)
T 2z63_A 298 KDFSYNF-GWQHLELVNCKF-GQFPT----LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKG------- 363 (570)
T ss_dssp CBCCSCC-CCSEEEEESCBC-SSCCB----CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEE-------
T ss_pred hhhhccC-CccEEeeccCcc-cccCc----ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccc-------
Confidence 43 3335 888888888763 34443 2447788888877753333222 33445555555543211100
Q ss_pred cCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCC
Q 048826 409 SSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNC 488 (725)
Q Consensus 409 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 488 (725)
..+.. +..+ ++|++|++++|...+..+. +..+++|+.|++++|
T Consensus 364 ------------------------------~~~~~-----~~~~-~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 364 ------------------------------CCSQS-----DFGT-TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406 (570)
T ss_dssp ------------------------------EEEHH-----HHTC-SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred ------------------------------ccccc-----cccc-CccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence 00000 0001 2466666666655443333 666667777777665
Q ss_pred CCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCc-cccccccCCCCCcceeecCCCCCCCCc
Q 048826 489 ENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRL-EALPKGLHNLTSLQQLTIGKGGELPSL 566 (725)
Q Consensus 489 ~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~ 566 (725)
......+ ..+..+++|++|++++|......+..+..+++|++|++++|... ..+|..+..+++|++|++++|......
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC
Confidence 4333322 24556667777777766655555666666667777777776644 346666666777777777766322221
Q ss_pred c-cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 567 E-EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 567 ~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
+ ....+++|++|++++|.... ++ +..+..+++|+.|++++|
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~--~~--~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKS--VP--DGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC--CC--TTTTTTCTTCCEEECCSS
T ss_pred hhhhhcccCCCEEeCCCCcCCC--CC--HHHhhcccCCcEEEecCC
Confidence 2 23344667777777764321 11 134566777777777773
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=7.1e-29 Score=276.59 Aligned_cols=174 Identities=19% Similarity=0.237 Sum_probs=102.9
Q ss_pred CccEEEEecccchhhhhh---hhcCCCCccEEEecCCCCccccc---ccccCCCcccEEEeccCCCccccCCCCcCcCcC
Q 048826 455 SLKSLSVYGCSKLESIAE---RLDNNTSLEYINISNCENLKILP---SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL 528 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 528 (725)
+|+.|++++|.+.+.++. .++.+++|+.|++++|. ++.++ ..+..+++|++|++++| .+..+|..+..+++|
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L 412 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKM 412 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccc
Confidence 466666666666655532 25566677777777643 33332 23556677777777765 344666666666677
Q ss_pred ceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826 529 TRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI 608 (725)
Q Consensus 529 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 608 (725)
++|++++|. +..++..+ .++|++|++++|. +..+. ..+++|++|++++|+.. .++. ...+++|+.|++
T Consensus 413 ~~L~Ls~N~-l~~l~~~~--~~~L~~L~Ls~N~-l~~~~--~~l~~L~~L~Ls~N~l~--~ip~----~~~l~~L~~L~L 480 (549)
T 2z81_A 413 RFLNLSSTG-IRVVKTCI--PQTLEVLDVSNNN-LDSFS--LFLPRLQELYISRNKLK--TLPD----ASLFPVLLVMKI 480 (549)
T ss_dssp CEEECTTSC-CSCCCTTS--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSCCS--SCCC----GGGCTTCCEEEC
T ss_pred cEEECCCCC-cccccchh--cCCceEEECCCCC-hhhhc--ccCChhcEEECCCCccC--cCCC----cccCccCCEEec
Confidence 777777766 33444333 2467777777773 33222 34567777777777543 2221 345778888888
Q ss_pred ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826 609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS 652 (725)
Q Consensus 609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 652 (725)
++| .+..+++.. +..+++|+.|++++|+-....+
T Consensus 481 s~N--~l~~~~~~~--------~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 481 SRN--QLKSVPDGI--------FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSS--CCCCCCTTG--------GGGCTTCCEEECCSSCBCCCHH
T ss_pred CCC--ccCCcCHHH--------HhcCcccCEEEecCCCccCCCc
Confidence 873 444444432 1257888888888876544433
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=276.67 Aligned_cols=445 Identities=17% Similarity=0.125 Sum_probs=234.8
Q ss_pred ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826 33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL 110 (725)
Q Consensus 33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 110 (725)
++|+++++....+|..+ .++|++|++++| .+..+++ ++.+++|++|++++|. ++.+++..++ .+++|
T Consensus 3 ~~l~ls~n~l~~ip~~~----~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-----~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL----SQKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFK-----FNQEL 71 (520)
T ss_dssp CEEECTTSCCSSCCCSC----CTTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGT-----TCTTC
T ss_pred ceEecCCCCcccccccc----cccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhh-----cccCC
Confidence 34555666555555433 245666666665 4555542 5566666666666655 4444332222 25566
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC---CCCcceeeeeccChhhhhhccCCCcc--cE
Q 048826 111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE---HLPALEMLAIEKCEELLASITCLPAL--CK 184 (725)
Q Consensus 111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l~~~~~~~~~L--~~ 184 (725)
++|+++++ +++.. +.. .+++|++|++++| .+++ .+|. .+++|++|++++|......+..+++| +.
T Consensus 72 ~~L~Ls~N-~l~~l-----p~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 72 EYLDLSHN-KLVKI-----SCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISK 142 (520)
T ss_dssp CEEECCSS-CCCEE-----ECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEE
T ss_pred CEEecCCC-ceeec-----Ccc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchhhccccccceeeE
Confidence 66666653 34433 111 4566666666655 3332 2232 24556666666555333344555555 66
Q ss_pred EEecCCCc--eeE-cccccccCC-CCcccccCCCCcccccCCCCCCCCccceeeeccccchh------HHhhhhhhhhhh
Q 048826 185 LKIYGCKK--VVW-RSSTDHLGS-QNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQT------YIWKSHNELLQD 254 (725)
Q Consensus 185 L~l~~~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~ 254 (725)
|++++|.. ... ......+.. ...+.... ...........+.++..|+..++..+. .+....+ .+..
T Consensus 143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~---n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~ 218 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPT---NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQT 218 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTTCCEEEEEEECCS---SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGG
T ss_pred EEeecccccccccccccccccccceEEEEecc---Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcc
Confidence 66666543 110 000000000 00000000 000011112234455555555555532 1111222 4577
Q ss_pred cCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcccccccc-----CCCCCCcEEEeecCCCcccc
Q 048826 255 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSS-----LSLSSLREIEIYKCSSLVSF 329 (725)
Q Consensus 255 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~~~~~~ 329 (725)
+++|++|+++++. +....... ..... ..++|++|++++|.+.+.+|..+ +.+++|+.+++++|.. .+
T Consensus 219 l~~L~~L~l~~~~-l~~~~~~~---~~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~ 290 (520)
T 2z7x_B 219 NPKLSNLTLNNIE-TTWNSFIR---ILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF 290 (520)
T ss_dssp CTTCCEEEEEEEE-EEHHHHHH---HHHHH--HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS
T ss_pred ccchhhccccccc-cCHHHHHH---HHHHh--hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec
Confidence 7888888888753 22211110 01110 01578888888888766777776 7777777777777653 33
Q ss_pred CCCC--CC---CCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccc
Q 048826 330 PEVA--LP---SKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTME 404 (725)
Q Consensus 330 ~~~~--~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 404 (725)
+... .+ .+|+.|++++|.... .+. ...+++|++|++++|.
T Consensus 291 p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~Ls~n~------------------------------- 335 (520)
T 2z7x_B 291 PQSYIYEIFSNMNIKNFTVSGTRMVH-MLC---PSKISPFLHLDFSNNL------------------------------- 335 (520)
T ss_dssp CTHHHHHHHHTCCCSEEEEESSCCCC-CCC---CSSCCCCCEEECCSSC-------------------------------
T ss_pred chhhhhcccccCceeEEEcCCCcccc-ccc---hhhCCcccEEEeECCc-------------------------------
Confidence 2100 01 346666665554211 110 0122333333333331
Q ss_pred cccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchh--hhhhhhcCCCCccE
Q 048826 405 EGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLE--SIAERLDNNTSLEY 482 (725)
Q Consensus 405 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~ 482 (725)
+.. ..+.. +..+ ++|+.|++++|.+.+ .+|..+..+++|+.
T Consensus 336 --------------------------l~~-----~~~~~-----~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 336 --------------------------LTD-----TVFEN-----CGHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp --------------------------CCT-----TTTTT-----CCCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred --------------------------cCh-----hhhhh-----hccC-CCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 110 00000 0111 358888888887765 55677888888888
Q ss_pred EEecCCCCccccccc-ccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCC
Q 048826 483 INISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 483 L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
|++++|.....+|.. +..+++|++|++++|...+.+|..+. ++|+.|++++|. ++.+|..+..+++|++|++++|
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N- 454 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN- 454 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-
Confidence 888886655546654 66788888888888776666655443 588888888887 4477777778888888888888
Q ss_pred CCCCccc--CCCcccccceecccchh
Q 048826 562 ELPSLEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 562 ~l~~~~~--~~~~~~L~~L~l~~n~~ 585 (725)
.+..++. ...+++|++|++++|+.
T Consensus 455 ~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 455 QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCccCHHHhccCCcccEEECcCCCC
Confidence 3444543 33457788888888764
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.1e-29 Score=281.61 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=62.3
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccC--------CCcccEEEeccCCCccccCCCCc--C
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHN--------LRQLQEITIQRCGNLESFPEGGL--L 524 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~ 524 (725)
+|+.|++++|.+....+..+..+++|+.|++++|.. ..+|..+.. +++|++|++++|.. ..+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSCC-CBCCGGGSTTT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcCCcC-CccChhhhhcc
Confidence 477777777766643334445577777777777543 355544322 22667777766543 35665554 6
Q ss_pred cCcCceeeeccccCccccccccCCCCCcceeecCCC
Q 048826 525 CAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKG 560 (725)
Q Consensus 525 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 560 (725)
+++|+.|++++|.... +|..+..+++|++|++++|
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 6666677766666443 6666666666666666655
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=270.45 Aligned_cols=452 Identities=13% Similarity=0.059 Sum_probs=234.7
Q ss_pred cEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCCCCC
Q 048826 58 VILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGF 136 (725)
Q Consensus 58 ~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l 136 (725)
++|++++| .++.+|. +. ++|++|++++|. +..+++..+. .+++|++|+++++ ++++.. +..+..+
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~-----~l~~L~~L~Ls~n-~l~~~~----~~~~~~l 68 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNY-ISELWTSDIL-----SLSKLRILIISHN-RIQYLD----ISVFKFN 68 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSC-CCCCCHHHHT-----TCTTCCEEECCSS-CCCEEE----GGGGTTC
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCc-ccccChhhcc-----ccccccEEecCCC-ccCCcC----hHHhhcc
Confidence 57889987 7888987 55 899999999987 7777654332 3788888888885 455543 4556778
Q ss_pred CCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCCCCc
Q 048826 137 PKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQ 216 (725)
Q Consensus 137 ~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (725)
++|++|++++| .++ .+|.. .+++|++|++++|.....
T Consensus 69 ~~L~~L~Ls~N-~l~-~lp~~--------------------~l~~L~~L~L~~N~l~~~--------------------- 105 (520)
T 2z7x_B 69 QELEYLDLSHN-KLV-KISCH--------------------PTVNLKHLDLSFNAFDAL--------------------- 105 (520)
T ss_dssp TTCCEEECCSS-CCC-EEECC--------------------CCCCCSEEECCSSCCSSC---------------------
T ss_pred cCCCEEecCCC-cee-ecCcc--------------------ccCCccEEeccCCccccc---------------------
Confidence 88888888877 554 34331 455666666666542210
Q ss_pred ccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCc--cEE
Q 048826 217 VFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRL--EYL 294 (725)
Q Consensus 217 ~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L--~~L 294 (725)
..+..++.+++|++|+++++. ++. ..+..+ ++| ++|
T Consensus 106 ------------------------------~~p~~~~~l~~L~~L~L~~n~-l~~-------~~~~~l----~~L~L~~L 143 (520)
T 2z7x_B 106 ------------------------------PICKEFGNMSQLKFLGLSTTH-LEK-------SSVLPI----AHLNISKV 143 (520)
T ss_dssp ------------------------------CCCGGGGGCTTCCEEEEEESS-CCG-------GGGGGG----TTSCEEEE
T ss_pred ------------------------------cchhhhccCCcceEEEecCcc-cch-------hhcccc----ccceeeEE
Confidence 001233667777777777743 332 113334 555 888
Q ss_pred EEecccC--ccccccccCCCC-CCcEEEeecCCCccccCCC--CCCCCCceEEeeccC-------cccccccccccCCCC
Q 048826 295 RLRYCKG--LVKLPQSSLSLS-SLREIEIYKCSSLVSFPEV--ALPSKLKKIQFRECD-------ALKLLPEAWMSDTNS 362 (725)
Q Consensus 295 ~L~~~~~--~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~--~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~~ 362 (725)
++++|.+ .+..|..+..+. +...+++++|.....++.. ..+++|+.|++++|. ..+.++ .+ ..++
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l--~~l~ 220 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL--QTNP 220 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG--GGCT
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh--cccc
Confidence 8887777 556666666554 2334455555544444322 236667777776654 111122 11 2235
Q ss_pred cccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccc
Q 048826 363 SLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPA 442 (725)
Q Consensus 363 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~ 442 (725)
+|+.|++.++......... .++ ....++|++|+++++. +.. .+|.
T Consensus 221 ~L~~L~l~~~~l~~~~~~~-~~~----------------------------~~~~~~L~~L~l~~n~-l~~-----~~p~ 265 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIR-ILQ----------------------------LVWHTTVWYFSISNVK-LQG-----QLDF 265 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHH-HHH----------------------------HHHTSSCSEEEEEEEE-EES-----CCCC
T ss_pred chhhccccccccCHHHHHH-HHH----------------------------HhhhCcccEEEeeccc-ccC-----cccc
Confidence 5666666554211100000 000 0000124444444431 110 0111
Q ss_pred cccccccCCCCCCccEEEEecccchhhhh-hhhcCC---CCccEEEecCCCCcccccccccCCCcccEEEeccCCCcccc
Q 048826 443 TLESLEVGNLPPSLKSLSVYGCSKLESIA-ERLDNN---TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESF 518 (725)
Q Consensus 443 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l---~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 518 (725)
.+.......+ ++|+.+++++|.. .+| ..+..+ ++|+.|++++|.. ...+ ....+++|++|++++|.....+
T Consensus 266 ~~~~~~~~~l-~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~Ls~n~l~~~~ 340 (520)
T 2z7x_B 266 RDFDYSGTSL-KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHML-CPSKISPFLHLDFSNNLLTDTV 340 (520)
T ss_dssp CCCCCCSCCC-CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCC-CCSSCCCCCEEECCSSCCCTTT
T ss_pred chhhcccccC-ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-cccc-chhhCCcccEEEeECCccChhh
Confidence 1000000011 2466666666655 222 222222 4577777776543 2221 1245677777777776655556
Q ss_pred CCCCcCcCcCceeeeccccCcc--ccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhcc
Q 048826 519 PEGGLLCAKLTRLTILDCKRLE--ALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERG 594 (725)
Q Consensus 519 ~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~ 594 (725)
|..+..+++|++|++++|.... .+|..+..+++|++|++++|.....++. ...+++|++|++++|.... ..
T Consensus 341 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~---- 415 (520)
T 2z7x_B 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-TI---- 415 (520)
T ss_dssp TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-GG----
T ss_pred hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc-ch----
Confidence 6666667777777777776443 3445566677777777777643322332 2234556666666554321 11
Q ss_pred cccccc-CCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccccc-ccCCcCCCeEeccCCC
Q 048826 595 RGFHRF-SSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSS-IVDLQNLTSLYLLDCP 670 (725)
Q Consensus 595 ~~~~~l-~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~ 670 (725)
+..+ ++|+.|++++| .+..+|..+. .+++|++|++++| .++.+|.. +..+++|+.|++++|+
T Consensus 416 --~~~l~~~L~~L~Ls~N--~l~~ip~~~~---------~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 416 --FRCLPPRIKVLDLHSN--KIKSIPKQVV---------KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp --GGSCCTTCCEEECCSS--CCCCCCGGGG---------GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --hhhhcccCCEEECCCC--cccccchhhh---------cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 1111 35555555552 2234444331 3455555555553 34445443 4445555555555543
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=9.8e-29 Score=282.78 Aligned_cols=307 Identities=15% Similarity=0.137 Sum_probs=174.2
Q ss_pred hhhcCCCcEEEEccCCCccc--chhhhhhHHHhhhh---hccCCccEEEEecccCcccccc--ccCCCCCCcEEEeecCC
Q 048826 252 LQDICSLKRLTIDSCPKLQS--LVAEEEKDQQQQLC---ELSCRLEYLRLRYCKGLVKLPQ--SSLSLSSLREIEIYKCS 324 (725)
Q Consensus 252 ~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~~~ 324 (725)
+..+++|+.|++++|..++. +|.. +..+. ...++|++|+|++|.+. .+|. .++++++|+.|++++|.
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~-----i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKAD-----WTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHH-----HHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred HhCCCCCCEEECcCCCCcccccchHH-----HHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence 46677777777777653543 4433 22221 11147888888887775 7777 77788888888888776
Q ss_pred CccccCCCCCCCCCceEEeeccCcccccccccccCCCCc-ccEEEeeccCCccccccc-ccc--cccceEEeecCCCccc
Q 048826 325 SLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSS-LEILSIWVCHSLTYLAGV-QLP--RSLKRLVILNCDNIRT 400 (725)
Q Consensus 325 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~-~~~--~~L~~L~l~~~~~l~~ 400 (725)
++.+|.++.+++|+.|++++|... .+|..+. .+++ |+.|++++|. ++.++.. ... ++|+.|+++++.....
T Consensus 585 -l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~--~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 585 -VRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFC--AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp -CCBCCCCCTTSEESEEECCSSCCS-CCCTTSC--EECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred -cccchhhcCCCcceEEECcCCccc-cchHHHh--hccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCc
Confidence 346666666778888888877633 5554432 3366 8888887774 3333321 011 1233444333321110
Q ss_pred cccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCc
Q 048826 401 LTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSL 480 (725)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L 480 (725)
++ .+. .....+. .++|+.|++++|.+.......+..+++|
T Consensus 660 ip---------------------------~l~--~~l~~~~-----------~~~L~~L~Ls~N~L~~lp~~~~~~l~~L 699 (876)
T 4ecn_A 660 GR---------------------------NIS--CSMDDYK-----------GINASTVTLSYNEIQKFPTELFATGSPI 699 (876)
T ss_dssp SS---------------------------SCS--SCTTTCC-----------CCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred cc---------------------------cch--hhhcccc-----------CCCcCEEEccCCcCCccCHHHHccCCCC
Confidence 00 000 0000000 0257888888877664333334477888
Q ss_pred cEEEecCCCCcccccccccC--------CCcccEEEeccCCCccccCCCCc--CcCcCceeeeccccCccccccccCCCC
Q 048826 481 EYINISNCENLKILPSGLHN--------LRQLQEITIQRCGNLESFPEGGL--LCAKLTRLTILDCKRLEALPKGLHNLT 550 (725)
Q Consensus 481 ~~L~l~~~~~~~~l~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~ 550 (725)
+.|++++| .+..+|..+.. +++|+.|++++|. +..+|..+. .+++|+.|++++|.... +|..+..++
T Consensus 700 ~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~ 776 (876)
T 4ecn_A 700 STIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776 (876)
T ss_dssp SEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT
T ss_pred CEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC
Confidence 88888875 44466654433 2377777777753 346666655 67777777777776443 666667777
Q ss_pred CcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcc
Q 048826 551 SLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTT 630 (725)
Q Consensus 551 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~ 630 (725)
+|+.|++++|. ++++|.... . .+..+..+++|+.|++++| .+..+|..+
T Consensus 777 ~L~~L~Ls~N~-----------------~ls~N~l~~-~---ip~~l~~L~~L~~L~Ls~N--~L~~Ip~~l-------- 825 (876)
T 4ecn_A 777 QLKAFGIRHQR-----------------DAEGNRILR-Q---WPTGITTCPSLIQLQIGSN--DIRKVDEKL-------- 825 (876)
T ss_dssp TCCEEECCCCB-----------------CTTCCBCCC-C---CCTTGGGCSSCCEEECCSS--CCCBCCSCC--------
T ss_pred CCCEEECCCCC-----------------Ccccccccc-c---ChHHHhcCCCCCEEECCCC--CCCccCHhh--------
Confidence 77777777664 222232111 0 1134556667777777763 335566543
Q ss_pred cCCCCCCcEEEeccCc
Q 048826 631 LPLPASLTSLWISNFP 646 (725)
Q Consensus 631 ~~~~~~L~~L~l~~~~ 646 (725)
.++|+.|++++|+
T Consensus 826 ---~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 826 ---TPQLYILDIADNP 838 (876)
T ss_dssp ---CSSSCEEECCSCT
T ss_pred ---cCCCCEEECCCCC
Confidence 2567777777654
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2e-26 Score=261.86 Aligned_cols=523 Identities=16% Similarity=0.112 Sum_probs=291.9
Q ss_pred EEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcce
Q 048826 35 FCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLET 112 (725)
Q Consensus 35 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~ 112 (725)
.+-++.+...+|..+. +++++|+|++| .++.+|+ |+.+++|++|+|++|. ++.|++..+. .+++|++
T Consensus 36 ~~c~~~~l~~vP~~lp----~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~-----~L~~L~~ 104 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLP----FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQ-----SLSHLST 104 (635)
T ss_dssp EECTTSCCSSCCSSSC----TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTT-----TCTTCCE
T ss_pred EECCCCCcCccCCCCC----cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhc-----CCCCCCE
Confidence 3444445667776553 47899999997 7888875 8899999999999886 8888776443 3788888
Q ss_pred eeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCc
Q 048826 113 LRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKK 192 (725)
Q Consensus 113 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~ 192 (725)
|+++++ +++... +..+..+++|++|++++| .++ .+|. ..++.+++|++|++++|..
T Consensus 105 L~Ls~N-~l~~l~----~~~f~~L~~L~~L~Ls~N-~l~-~l~~-----------------~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 105 LILTGN-PIQSLA----LGAFSGLSSLQKLVAVET-NLA-SLEN-----------------FPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp EECTTC-CCCEEC----GGGGTTCTTCCEEECTTS-CCC-CSTT-----------------CCCTTCTTCCEEECCSSCC
T ss_pred EEccCC-cCCCCC----HHHhcCCCCCCEEECCCC-cCC-CCCh-----------------hhhhcCcccCeeccccCcc
Confidence 888885 566552 334577888888888887 554 3332 2345555566666655542
Q ss_pred eeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccc
Q 048826 193 VVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSL 272 (725)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 272 (725)
.... .+..+..+++|++|+++++ .++.+
T Consensus 161 ~~~~---------------------------------------------------~~~~~~~l~~L~~L~L~~N-~l~~~ 188 (635)
T 4g8a_A 161 QSFK---------------------------------------------------LPEYFSNLTNLEHLDLSSN-KIQSI 188 (635)
T ss_dssp CCCC---------------------------------------------------CCGGGGGCTTCCEEECCSS-CCCEE
T ss_pred ccCC---------------------------------------------------CchhhccchhhhhhcccCc-ccccc
Confidence 2100 0112344555666666553 34444
Q ss_pred hhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccC--CCCCCCCCceEEeeccCc--
Q 048826 273 VAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKIQFRECDA-- 348 (725)
Q Consensus 273 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~l~~L~~L~l~~~~~-- 348 (725)
++.. +..+......+..++++.|.+. .++........++.+++.++....... .+..+..++...+.....
T Consensus 189 ~~~~----l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 189 YCTD----LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CGGG----GHHHHTCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cccc----ccchhhhhhhhhhhhcccCccc-ccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 3322 3333333334445555555442 333333333344555555543211111 011133333333321110
Q ss_pred cccccccc--ccCCCCcccEEEeeccCCcccc----cccccccccceEEeecCCCccccccccccccCCCcccccCCCCe
Q 048826 349 LKLLPEAW--MSDTNSSLEILSIWVCHSLTYL----AGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEH 422 (725)
Q Consensus 349 ~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 422 (725)
...+.... .......+....+..+...... .......+++.+.+.++........ .....++.
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-----------~~~~~L~~ 332 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF-----------SYNFGWQH 332 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG-----------GSCCCCSE
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc-----------ccchhhhh
Confidence 00000000 0001122222222222111100 1112334555555554432211110 11124777
Q ss_pred EEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc--cccccccC
Q 048826 423 LHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK--ILPSGLHN 500 (725)
Q Consensus 423 L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~ 500 (725)
|++.++. +.. +....+ +.|+.+.+.++..... .....+++|+.+++++|.... ..+.....
T Consensus 333 L~l~~~~-~~~-~~~~~l-------------~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 333 LELVNCK-FGQ-FPTLKL-------------KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp EEEESCE-ESS-CCCCBC-------------TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred hhccccc-ccC-cCcccc-------------hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhh
Confidence 7777642 111 111111 3478888887754432 234567888888888865432 23444556
Q ss_pred CCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccc-cccCCCCCcceeecCCCCCCCCcc-cCCCcccccce
Q 048826 501 LRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALP-KGLHNLTSLQQLTIGKGGELPSLE-EDGLPTNLHSL 578 (725)
Q Consensus 501 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L 578 (725)
+.+|+.+++..+.. ..++..+..+++|+.+++.++......+ ..+..+++++.++++.|......+ ....+++|++|
T Consensus 396 ~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 396 TISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp CSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhcccccc-ccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 77888888887543 4455566778888888888877554443 345778888888888884322222 23445888888
Q ss_pred ecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc-ccccC
Q 048826 579 WIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS-SSIVD 657 (725)
Q Consensus 579 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~ 657 (725)
++++|....... +..+..+++|+.|++++| .+..+++.. +..+++|++|++++| .++.++ ..+..
T Consensus 475 ~Ls~N~~~~~~~---~~~~~~l~~L~~L~Ls~N--~L~~l~~~~--------f~~l~~L~~L~Ls~N-~l~~l~~~~~~~ 540 (635)
T 4g8a_A 475 KMAGNSFQENFL---PDIFTELRNLTFLDLSQC--QLEQLSPTA--------FNSLSSLQVLNMSHN-NFFSLDTFPYKC 540 (635)
T ss_dssp ECTTCEEGGGEE---CSCCTTCTTCCEEECTTS--CCCEECTTT--------TTTCTTCCEEECTTS-CCCBCCCGGGTT
T ss_pred hhhhcccccccC---chhhhhccccCEEECCCC--ccCCcChHH--------HcCCCCCCEEECCCC-cCCCCChhHHhC
Confidence 888886543221 246778889999999884 444443322 236789999999985 466554 45678
Q ss_pred CcCCCeEeccCCCCCcccCCCCC---cccccEEEecCCc
Q 048826 658 LQNLTSLYLLDCPKLRYFPEKGL---PSSLLQLHIYRCP 693 (725)
Q Consensus 658 ~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~c~ 693 (725)
+++|+.|++++| +++.+++..+ +++|++|+++++|
T Consensus 541 l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 541 LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 899999999985 5666655443 4689999997654
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=8.4e-28 Score=270.91 Aligned_cols=343 Identities=15% Similarity=0.169 Sum_probs=201.1
Q ss_pred cccccCCCCCCcEEEeecCCCccc-----------------cC-CCC--CCCCCceEEeeccCcccccccccccCCCCcc
Q 048826 305 LPQSSLSLSSLREIEIYKCSSLVS-----------------FP-EVA--LPSKLKKIQFRECDALKLLPEAWMSDTNSSL 364 (725)
Q Consensus 305 ~~~~~~~l~~L~~L~L~~~~~~~~-----------------~~-~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 364 (725)
+|..++++++|++|++++|..... +| .++ .+++|++|++++|.....+|..+. .+++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCC
Confidence 555555555555555555543221 33 233 355555555555554445554432 23555
Q ss_pred cEEEeeccCCcc--ccccc-c------cccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCcc-cc
Q 048826 365 EILSIWVCHSLT--YLAGV-Q------LPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLT-RI 434 (725)
Q Consensus 365 ~~L~l~~~~~l~--~~~~~-~------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l 434 (725)
++|++++|..++ .++.. . ..++|+.|++.++.-. .++....+ ...++|++|+++++. +. .
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-------~~l~~L~~L~L~~N~-l~g~- 345 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-------QKMKKLGMLECLYNQ-LEGK- 345 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-------TTCTTCCEEECCSCC-CEEE-
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-------ccCCCCCEEeCcCCc-Cccc-
Confidence 555555554222 12221 1 1245666666554322 22210011 111346666666532 22 2
Q ss_pred ccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCC-ccEEEecCCCCcccccccccCCC--cccEEEecc
Q 048826 435 FSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTS-LEYINISNCENLKILPSGLHNLR--QLQEITIQR 511 (725)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~l~~~~~~l~--~L~~L~l~~ 511 (725)
++ .+.. + ++|+.|++++|.+. .+|..+..+++ |+.|++++|. +..+|..+..++ +|++|++++
T Consensus 346 ip--~~~~---------l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 346 LP--AFGS---------E-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp CC--CCEE---------E-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred hh--hhCC---------C-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence 22 1111 1 35888888887665 66667777777 8888888754 447777666543 788888888
Q ss_pred CCCccccCCCCc-------CcCcCceeeeccccCcccccccc-CCCCCcceeecCCCCCCCCcccCCC---------ccc
Q 048826 512 CGNLESFPEGGL-------LCAKLTRLTILDCKRLEALPKGL-HNLTSLQQLTIGKGGELPSLEEDGL---------PTN 574 (725)
Q Consensus 512 ~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~---------~~~ 574 (725)
|.....+|..+. .+++|++|++++|... .+|..+ ..+++|++|++++|.. ..++.... +++
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGG
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCC
Confidence 776666666555 6668888888888744 565543 4578888888888743 34443211 127
Q ss_pred ccceecccchhhHHHHhhcccccc--ccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEec------cCc
Q 048826 575 LHSLWIEDNMEIWKSMIERGRGFH--RFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWIS------NFP 646 (725)
Q Consensus 575 L~~L~l~~n~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~------~~~ 646 (725)
|++|++++|... .+ +..+. .+++|+.|++++| .+..+|..+. .+++|+.|+++ +|.
T Consensus 490 L~~L~Ls~N~l~--~l---p~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~---------~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 490 LTSIDLRFNKLT--KL---SDDFRATTLPYLVGIDLSYN--SFSKFPTQPL---------NSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp CCEEECCSSCCC--BC---CGGGSTTTCTTCCEEECCSS--CCSSCCCGGG---------GCSSCCEEECCSCBCTTCCB
T ss_pred ccEEECcCCcCC--cc---ChhhhhccCCCcCEEECCCC--CCCCcChhhh---------cCCCCCEEECCCCcccccCc
Confidence 888888888654 12 23343 7788888888873 3344666553 56788888884 444
Q ss_pred ccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCCc
Q 048826 647 NLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCP 693 (725)
Q Consensus 647 ~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 693 (725)
....+|..+..+++|+.|++++|. ++.+|.. +.++|+.|++++|+
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCT
T ss_pred ccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCC
Confidence 566777777778888888888864 4677664 34778888888875
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=8.4e-26 Score=256.64 Aligned_cols=500 Identities=15% Similarity=0.122 Sum_probs=280.1
Q ss_pred CCcceEEEeccCCCCCCC-CcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPT-WLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTP 106 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~ 106 (725)
+++++|+|++|.+..+|. .+.. +++|++|+|++| .++.+|+ |+.+++|++|+|++|. ++.+++..++.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~--l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~----- 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG----- 122 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTT-----
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC--CCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcC-----
Confidence 689999999999998864 4544 899999999998 7898876 8999999999999997 89998765543
Q ss_pred CCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccC---CCCCcceeeeeccChhh---hhhcc--
Q 048826 107 FPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFP---EHLPALEMLAIEKCEEL---LASIT-- 177 (725)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p---~~l~~L~~L~l~~~~~l---~~~~~-- 177 (725)
+++|++|+++++ +++... +..++.+++|++|+++++ .++. ..| ..+++|++|++++|... ...+.
T Consensus 123 L~~L~~L~Ls~N-~l~~l~----~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 123 LSSLQKLVAVET-NLASLE----NFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp CTTCCEEECTTS-CCCCST----TCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCCCCEEECCCC-cCCCCC----hhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 899999999996 566653 345789999999999998 4442 223 23566777777766521 12222
Q ss_pred -CCC-cccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhc
Q 048826 178 -CLP-ALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDI 255 (725)
Q Consensus 178 -~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 255 (725)
.++ ....++++.+....+.... .....+..+.+.+... ........+..+
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~-------------------------~~~~~~~~l~l~~n~~---~~~~~~~~~~~l 248 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGA-------------------------FKEIRLHKLTLRNNFD---SLNVMKTCIQGL 248 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTT-------------------------TTTCEEEEEEEESCCS---SHHHHHHHHHTT
T ss_pred hhhhhhhhhhhcccCcccccCccc-------------------------ccchhhhhhhhhcccc---cccccchhhcCC
Confidence 222 1234555555433322111 0112223333332211 112334455667
Q ss_pred CCCcEEEEccCC-----CcccchhhhhhHHHhhhhhccCCccEEEEecccCcc---ccccccCCCCCCcEEEeecCCCcc
Q 048826 256 CSLKRLTIDSCP-----KLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV---KLPQSSLSLSSLREIEIYKCSSLV 327 (725)
Q Consensus 256 ~~L~~L~l~~~~-----~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~---~~~~~~~~l~~L~~L~L~~~~~~~ 327 (725)
..++...+.... .+...... .+... ..+....+..+.... .....+..+.+++.+.+.++. +.
T Consensus 249 ~~l~~~~l~~~~~~~~~~l~~~~~~----~~~~~----~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~ 319 (635)
T 4g8a_A 249 AGLEVHRLVLGEFRNEGNLEKFDKS----ALEGL----CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IE 319 (635)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCTT----TTGGG----GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EE
T ss_pred ccccccccccccccccccccccccc----ccccc----cchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cc
Confidence 777766654321 11111111 12222 455555555443321 333445566777777777764 44
Q ss_pred ccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCcccccccccc
Q 048826 328 SFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGI 407 (725)
Q Consensus 328 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 407 (725)
.+.......+|+.|++.++.... ++. ..+..|+.+.+..+... ........++++.+++.++.......
T Consensus 320 ~~~~~~~~~~L~~L~l~~~~~~~-~~~----~~l~~L~~l~l~~n~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~----- 388 (635)
T 4g8a_A 320 RVKDFSYNFGWQHLELVNCKFGQ-FPT----LKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGC----- 388 (635)
T ss_dssp ECGGGGSCCCCSEEEEESCEESS-CCC----CBCTTCCEEEEESCCSC-CBCCCCBCTTCCEEECCSSCCBEEEE-----
T ss_pred cccccccchhhhhhhcccccccC-cCc----ccchhhhhcccccccCC-CCcccccccccccchhhccccccccc-----
Confidence 44455556677788777765222 211 12355666666655322 11222223344444444322110000
Q ss_pred ccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecC
Q 048826 408 QSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISN 487 (725)
Q Consensus 408 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 487 (725)
.+.. ... ..+|+.+++..+.... .+..+..+++|+.+++.+
T Consensus 389 --------------------------------~~~~-----~~~-~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 389 --------------------------------CSQS-----DFG-TISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp --------------------------------CCHH-----HHS-CSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred --------------------------------cccc-----hhh-hhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence 0000 000 0246666666654433 333455667777777766
Q ss_pred CCCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcc-ccccccCCCCCcceeecCCCCCCCC
Q 048826 488 CENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLE-ALPKGLHNLTSLQQLTIGKGGELPS 565 (725)
Q Consensus 488 ~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~ 565 (725)
++.....+ ..+..+++++.+++++|......+..+..+++|+.|++++|.... ..|..+..+++|++|++++|. +..
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~ 508 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQ 508 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCC
Confidence 55444332 335566777777777766555556666666777777777776443 345566777777777777773 333
Q ss_pred ccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCC-CCcccccCcccCCCCCCcEEEe
Q 048826 566 LEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPP-EPEDVRLGTTLPLPASLTSLWI 642 (725)
Q Consensus 566 ~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l 642 (725)
++. ...+++|++|+|++|+... +. +..+..+++|+.|++++ +.+..+++ .+.. .+++|+.|++
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~--l~--~~~~~~l~~L~~L~Ls~--N~l~~~~~~~l~~--------l~~~L~~L~L 574 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFS--LD--TFPYKCLNSLQVLDYSL--NHIMTSKKQELQH--------FPSSLAFLNL 574 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCB--CC--CGGGTTCTTCCEEECTT--SCCCBCCSSCTTC--------CCTTCCEEEC
T ss_pred cChHHHcCCCCCCEEECCCCcCCC--CC--hhHHhCCCCCCEEECCC--CcCCCCCHHHHHh--------hhCcCCEEEe
Confidence 221 2334566666666664321 11 13455667777777776 33333333 2221 2356777777
Q ss_pred ccCc
Q 048826 643 SNFP 646 (725)
Q Consensus 643 ~~~~ 646 (725)
++|+
T Consensus 575 ~~Np 578 (635)
T 4g8a_A 575 TQND 578 (635)
T ss_dssp TTCC
T ss_pred eCCC
Confidence 7754
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.2e-26 Score=258.76 Aligned_cols=143 Identities=15% Similarity=0.059 Sum_probs=104.1
Q ss_pred CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPF 107 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 107 (725)
...++++++++....+|..+ .++|++|++++| .+..+++ ++.+++|++|++++|. ++.+++..++ .+
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-----~l 99 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDL----PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFL-----FN 99 (562)
T ss_dssp --CCEEECTTSCCCSCCTTS----CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTT-----TC
T ss_pred CCCcEEEcCCCCCccCCCCC----CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhC-----CC
Confidence 44488999998888888655 378999999998 6777764 8899999999999886 7777655433 37
Q ss_pred CCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCccc-ccCC---CCCcceeeeeccChhhhhhccCCCcc-
Q 048826 108 PCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQG-TFPE---HLPALEMLAIEKCEELLASITCLPAL- 182 (725)
Q Consensus 108 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l~~~~~~~~~L- 182 (725)
++|++|+++++ +++.. +.. .+++|++|++++| .+++ .+|. .+++|++|+++++......+..+++|
T Consensus 100 ~~L~~L~Ls~N-~l~~l-----p~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~ 170 (562)
T 3a79_B 100 QDLEYLDVSHN-RLQNI-----SCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170 (562)
T ss_dssp TTCCEEECTTS-CCCEE-----CSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSC
T ss_pred CCCCEEECCCC-cCCcc-----Ccc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchhhhhhce
Confidence 88999999985 56654 222 6889999999988 4542 2222 46788888888876443445555566
Q ss_pred -cEEEecCCCc
Q 048826 183 -CKLKIYGCKK 192 (725)
Q Consensus 183 -~~L~l~~~~~ 192 (725)
+.|++++|..
T Consensus 171 L~~L~L~~n~l 181 (562)
T 3a79_B 171 LSCILLDLVSY 181 (562)
T ss_dssp EEEEEEEESSC
T ss_pred eeEEEeecccc
Confidence 8888888764
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=9.8e-27 Score=266.30 Aligned_cols=339 Identities=17% Similarity=0.181 Sum_probs=193.9
Q ss_pred HhhhhhccCCccEEEEecccCcc-----------------ccccccC--CCCCCcEEEeecCCCccccCC-CCCCCCCce
Q 048826 281 QQQLCELSCRLEYLRLRYCKGLV-----------------KLPQSSL--SLSSLREIEIYKCSSLVSFPE-VALPSKLKK 340 (725)
Q Consensus 281 l~~l~~~~~~L~~L~L~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~ 340 (725)
+..+ ++|++|+|++|.+.+ .+|..++ ++++|++|+|++|...+.+|. +..+++|+.
T Consensus 444 l~~L----~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 444 IQRL----TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp GGGC----TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred HhcC----CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 5555 899999999999876 3888887 999999999999987776663 556899999
Q ss_pred EEeeccCccc--cccccccc-----CCCCcccEEEeeccCCcccccc---cccccccceEEeecCCCccccccccccccC
Q 048826 341 IQFRECDALK--LLPEAWMS-----DTNSSLEILSIWVCHSLTYLAG---VQLPRSLKRLVILNCDNIRTLTMEEGIQSS 410 (725)
Q Consensus 341 L~l~~~~~~~--~~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 410 (725)
|++++|..+. .+|..+.. ..+++|+.|++++|... .++. ...+++|+.|+++++... .++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-------- 589 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-------- 589 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--------
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--------
Confidence 9999997343 46554332 23468999999988543 5554 244556666666654321 211
Q ss_pred CCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCC-ccEEEecCCC
Q 048826 411 SSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTS-LEYINISNCE 489 (725)
Q Consensus 411 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-L~~L~l~~~~ 489 (725)
. +..+ ++|+.|++++|.+. .+|..+..+++ |+.|++++|.
T Consensus 590 ----------------------------~---------~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 590 ----------------------------A---------FGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ----------------------------C---------CCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred ----------------------------h---------hcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 0 0000 23666666665544 45555555665 6666666643
Q ss_pred CcccccccccCCC--cccEEEeccCCCccccCCC---C--cCcCcCceeeeccccCcccccccc-CCCCCcceeecCCCC
Q 048826 490 NLKILPSGLHNLR--QLQEITIQRCGNLESFPEG---G--LLCAKLTRLTILDCKRLEALPKGL-HNLTSLQQLTIGKGG 561 (725)
Q Consensus 490 ~~~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~~---~--~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~ 561 (725)
+..+|..+..++ +|+.|++++|.....+|.. . ..+++|+.|++++|... .+|..+ ..+++|+.|++++|.
T Consensus 631 -L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 631 -LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp -CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred -CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence 335555544443 2666666665544333321 1 12335666666666533 444433 355666666666652
Q ss_pred CCCCcccCC---------CcccccceecccchhhHHHHhhcccccc--ccCCCcEEEeecCCCCCccCCCCCcccccCcc
Q 048826 562 ELPSLEEDG---------LPTNLHSLWIEDNMEIWKSMIERGRGFH--RFSSLRRLTIINCDDDMVSFPPEPEDVRLGTT 630 (725)
Q Consensus 562 ~l~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~ 630 (725)
+..++... .+++|++|++++|... .+ +..+. .+++|+.|++++| .+..+|..+.
T Consensus 709 -L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~l---p~~l~~~~l~~L~~L~Ls~N--~L~~lp~~l~------- 773 (876)
T 4ecn_A 709 -MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SL---SDDFRATTLPYLSNMDVSYN--CFSSFPTQPL------- 773 (876)
T ss_dssp -CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CC---CGGGSTTTCTTCCEEECCSS--CCSSCCCGGG-------
T ss_pred -CCccChHHhccccccccccCCccEEECCCCCCc--cc---hHHhhhccCCCcCEEEeCCC--CCCccchhhh-------
Confidence 22333211 1125666666666432 11 12333 5666666666662 2333554442
Q ss_pred cCCCCCCcEEEecc------CcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCCc
Q 048826 631 LPLPASLTSLWISN------FPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRCP 693 (725)
Q Consensus 631 ~~~~~~L~~L~l~~------~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 693 (725)
.+++|+.|++++ |.....+|..+..+++|+.|++++|.. +.+|.. +.++|+.|++++|+
T Consensus 774 --~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 774 --NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp --GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCT
T ss_pred --cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCC
Confidence 456666666654 333445555556666666666666433 555554 33566666666665
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=8e-27 Score=251.22 Aligned_cols=257 Identities=28% Similarity=0.304 Sum_probs=149.8
Q ss_pred hhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC
Q 048826 252 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE 331 (725)
Q Consensus 252 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 331 (725)
+..+++|++|+++++ .++.++.. +++|++|++++|.+.+ +| .++.+++|++|++++|. ++.++.
T Consensus 149 ~~~l~~L~~L~l~~N-~l~~lp~~------------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~-l~~l~~ 212 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN-SLKKLPDL------------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS-LKKLPD 212 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSCCCCC------------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC-CSSCCC
T ss_pred cCCCCCCCEEECCCC-cCcccCCC------------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc-CCcCCC
Confidence 366788888888885 45555432 1588888888887654 55 57888888888888875 444443
Q ss_pred CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCC
Q 048826 332 VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSS 411 (725)
Q Consensus 332 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 411 (725)
..++|++|++++|. +..++. + ..+++|+.|++++|. ++.++. .+++|+.|++.++. +..++.
T Consensus 213 --~~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L~l~~N~-l~~l~~-------- 274 (454)
T 1jl5_A 213 --LPLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYADNNL-LKTLPD--LPPSLEALNVRDNY-LTDLPE-------- 274 (454)
T ss_dssp --CCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSSC-CSSCCS--CCTTCCEEECCSSC-CSCCCC--------
T ss_pred --CcCcccEEECcCCc-CCcccc-c--CCCCCCCEEECCCCc-CCcccc--cccccCEEECCCCc-ccccCc--------
Confidence 23588888888885 445653 2 355788888888773 344432 34678888887764 222221
Q ss_pred CcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCC-CCccEEEecCCCC
Q 048826 412 SRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNN-TSLEYINISNCEN 490 (725)
Q Consensus 412 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 490 (725)
..++|++|+++++ .++. ++ .+|++|+.|++++|...+ +..+ ++|+.|++++|.
T Consensus 275 ----~~~~L~~L~ls~N-~l~~-l~--------------~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~- 328 (454)
T 1jl5_A 275 ----LPQSLTFLDVSEN-IFSG-LS--------------ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNK- 328 (454)
T ss_dssp ----CCTTCCEEECCSS-CCSE-ES--------------CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSC-
T ss_pred ----ccCcCCEEECcCC-ccCc-cc--------------CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCc-
Confidence 0135888888764 2332 11 122458888888886654 2223 478888888854
Q ss_pred cccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcc--ccccccCCCCCcceeecCCCCCCCCccc
Q 048826 491 LKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLE--ALPKGLHNLTSLQQLTIGKGGELPSLEE 568 (725)
Q Consensus 491 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 568 (725)
+..+|.. +++|++|++++|. +..+|. .+++|++|++++|+... .+|..+..+ . .|.....++.
T Consensus 329 l~~lp~~---~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------~--~n~~~~~i~~ 393 (454)
T 1jl5_A 329 LIELPAL---PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------R--MNSHLAEVPE 393 (454)
T ss_dssp CSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE------E--CCC-------
T ss_pred ccccccc---CCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhh------h--hccccccccc
Confidence 4456653 5788888888864 456776 46788888888887655 455544332 1 2222222222
Q ss_pred CCCcccccceecccchh
Q 048826 569 DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 569 ~~~~~~L~~L~l~~n~~ 585 (725)
.+++|++|++++|+.
T Consensus 394 --~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 394 --LPQNLKQLHVETNPL 408 (454)
T ss_dssp -----------------
T ss_pred --ccCcCCEEECCCCcC
Confidence 246777777777754
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.4e-26 Score=252.36 Aligned_cols=450 Identities=15% Similarity=0.099 Sum_probs=220.6
Q ss_pred CccEEEeccCcCcccccCCCC-CcceeeeeccChhh---hhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCC
Q 048826 138 KLRELHVIRCSKLQGTFPEHL-PALEMLAIEKCEEL---LASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDT 213 (725)
Q Consensus 138 ~L~~L~l~~c~~l~~~~p~~l-~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (725)
..++++++++ .++ .+|..+ ++|++|++++|... ...+..+++|++|++++|......
T Consensus 32 ~~~~l~ls~~-~L~-~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------- 92 (562)
T 3a79_B 32 LESMVDYSNR-NLT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD----------------- 92 (562)
T ss_dssp -CCEEECTTS-CCC-SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEEC-----------------
T ss_pred CCcEEEcCCC-CCc-cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCC-----------------
Confidence 3456666666 554 455533 46666666666522 246778888888888887644321
Q ss_pred CCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccE
Q 048826 214 SNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEY 293 (725)
Q Consensus 214 ~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~ 293 (725)
+..+..+++|++|+++++ .++.++.. .+ ++|++
T Consensus 93 -----------------------------------~~~~~~l~~L~~L~Ls~N-~l~~lp~~-------~l----~~L~~ 125 (562)
T 3a79_B 93 -----------------------------------FHVFLFNQDLEYLDVSHN-RLQNISCC-------PM----ASLRH 125 (562)
T ss_dssp -----------------------------------TTTTTTCTTCCEEECTTS-CCCEECSC-------CC----TTCSE
T ss_pred -----------------------------------HHHhCCCCCCCEEECCCC-cCCccCcc-------cc----ccCCE
Confidence 222355677777777774 45565543 22 67777
Q ss_pred EEEecccCcc-ccccccCCCCCCcEEEeecCCCccccCCCCCCCCC--ceEEeeccCc--ccccccccccCCCCcccEEE
Q 048826 294 LRLRYCKGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKL--KKIQFRECDA--LKLLPEAWMSDTNSSLEILS 368 (725)
Q Consensus 294 L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~ 368 (725)
|++++|.+.+ .+|..++++++|++|++++|.. +. ..+..+++| +.|++++|.. ....+..+.......+ .++
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~ 202 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLV 202 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcc-cc-CchhhhhhceeeEEEeecccccccccCcccccccCcceE-EEE
Confidence 7777777654 3456777777777777777643 22 223334455 7777777764 3333333222111111 233
Q ss_pred eeccCCccccccc--ccccccceEEeecCCCc-cccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCcccccc
Q 048826 369 IWVCHSLTYLAGV--QLPRSLKRLVILNCDNI-RTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLE 445 (725)
Q Consensus 369 l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~ 445 (725)
+.++.....+... ...++|+.+++.++... ..+. ... ......+.++.+++.++. +. ...+....+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~--~~~----~~l~~l~~L~~L~L~~~~-l~----~~~~~~~~~ 271 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM--TFL----SELTRGPTLLNVTLQHIE-TT----WKCSVKLFQ 271 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH--HHH----HHHHSCSSCEEEEEEEEE-EC----HHHHHHHHH
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHH--HHH----HHHhccCcceEEEecCCc-Cc----HHHHHHHHH
Confidence 4443322222111 22345555555543200 0000 000 000011234455544421 00 000000000
Q ss_pred ccccCCCCCCccEEEEecccchhhhhhhh-----cCCCCccEEEecCCCCcccccc-cccC---CCcccEEEeccCCCcc
Q 048826 446 SLEVGNLPPSLKSLSVYGCSKLESIAERL-----DNNTSLEYINISNCENLKILPS-GLHN---LRQLQEITIQRCGNLE 516 (725)
Q Consensus 446 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~l~~-~~~~---l~~L~~L~l~~~~~~~ 516 (725)
.. ..++|++|++++|...+.+|..+ ..+++|+.+++..+.. .+|. .+.. -.+|++|++++|....
T Consensus 272 ~~----~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 272 FF----WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HH----TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred hh----hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc
Confidence 00 00246666666666555555444 3444444444444322 2221 1111 1346666666654321
Q ss_pred ccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcc----cCCCcccccceecccchhhHHHHhh
Q 048826 517 SFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE----EDGLPTNLHSLWIEDNMEIWKSMIE 592 (725)
Q Consensus 517 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~ 592 (725)
++ ....+++|++|++++|.....+|..+..+++|++|++++|. +..++ ....+++|++|++++|.... .++.
T Consensus 346 -~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~ 421 (562)
T 3a79_B 346 -MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNS-HAYD 421 (562)
T ss_dssp -CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBS-CCSS
T ss_pred -cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCC-ccCh
Confidence 11 01345566666666666555555566666666666666662 22221 13344666666666665321 1111
Q ss_pred ccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCC
Q 048826 593 RGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKL 672 (725)
Q Consensus 593 ~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l 672 (725)
..+..+++|+.|++++|. ....+|..+ +++|+.|++++| .++.+|..+..+++|+.|++++| .+
T Consensus 422 --~~~~~l~~L~~L~l~~n~-l~~~~~~~l-----------~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l 485 (562)
T 3a79_B 422 --RTCAWAESILVLNLSSNM-LTGSVFRCL-----------PPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QL 485 (562)
T ss_dssp --CCCCCCTTCCEEECCSSC-CCGGGGSSC-----------CTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CC
T ss_pred --hhhcCcccCCEEECCCCC-CCcchhhhh-----------cCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CC
Confidence 235556666666666632 112222211 246677777664 46666665556667777777663 45
Q ss_pred cccCCC--CCcccccEEEecCCc
Q 048826 673 RYFPEK--GLPSSLLQLHIYRCP 693 (725)
Q Consensus 673 ~~l~~~--~~~~~L~~L~l~~c~ 693 (725)
+.+|.. ..+++|+.|+++++|
T Consensus 486 ~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 486 KSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCHHHHhcCCCCCEEEecCCC
Confidence 566554 224666667766654
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=2e-26 Score=248.18 Aligned_cols=417 Identities=24% Similarity=0.211 Sum_probs=179.0
Q ss_pred CCCccEEEEecCCCCCcCCC-CCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCC
Q 048826 54 FSNLVILKFEDCGMCTTWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQG 132 (725)
Q Consensus 54 ~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 132 (725)
.++|++|.++++ .++.+|. ++++++|++|++++|.....+|..+ +.+.+|+.+++.+|.
T Consensus 10 ~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~------~~l~~L~~l~l~~c~------------- 69 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN------GEQREMAVSRLRDCL------------- 69 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS------CCCHHHHHHHHHHHH-------------
T ss_pred cccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCccc------ccchhcchhhhhhhh-------------
Confidence 477888888887 6688887 8888889999888887444555443 224555555555542
Q ss_pred CCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCceeEcccccccCCCCcccccC
Q 048826 133 VEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGD 212 (725)
Q Consensus 133 ~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (725)
..++++|++++| .++ .+|...++|++|+ +++|....
T Consensus 70 ---~~~l~~L~l~~~-~l~-~lp~~~~~L~~L~---------------------l~~n~l~~------------------ 105 (454)
T 1jl5_A 70 ---DRQAHELELNNL-GLS-SLPELPPHLESLV---------------------ASCNSLTE------------------ 105 (454)
T ss_dssp ---HHTCSEEECTTS-CCS-CCCSCCTTCSEEE---------------------CCSSCCSS------------------
T ss_pred ---ccCCCEEEecCC-ccc-cCCCCcCCCCEEE---------------------ccCCcCCc------------------
Confidence 145678888877 454 4554333444444 44332111
Q ss_pred CCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCcc
Q 048826 213 TSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLE 292 (725)
Q Consensus 213 ~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~ 292 (725)
+| ..+++|++|+++++ .++.++. .+++|+
T Consensus 106 ----------lp----------------------------~~~~~L~~L~l~~n-~l~~l~~------------~~~~L~ 134 (454)
T 1jl5_A 106 ----------LP----------------------------ELPQSLKSLLVDNN-NLKALSD------------LPPLLE 134 (454)
T ss_dssp ----------CC----------------------------CCCTTCCEEECCSS-CCSCCCS------------CCTTCC
T ss_pred ----------cc----------------------------cccCCCcEEECCCC-ccCcccC------------CCCCCC
Confidence 00 01245666666663 3433321 125777
Q ss_pred EEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeecc
Q 048826 293 YLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVC 372 (725)
Q Consensus 293 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 372 (725)
+|++++|.+.+ +| .++.+++|++|++++|. ++.++. .+++|++|++++|. +..++. + ..+++|+.|++++|
T Consensus 135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~-l~~lp~--~~~~L~~L~L~~n~-l~~l~~-~--~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNNQ-LEELPE-L--QNLPFLTAIYADNN 205 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSS
T ss_pred EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc-CcccCC--CcccccEEECcCCc-CCcCcc-c--cCCCCCCEEECCCC
Confidence 77777776643 66 47777778888877764 444443 23577777777765 333442 1 33466666666655
Q ss_pred CCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCC
Q 048826 373 HSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNL 452 (725)
Q Consensus 373 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~ 452 (725)
. ++.++. .+++ |++|+++++ .++. ++. +. .+
T Consensus 206 ~-l~~l~~--~~~~---------------------------------L~~L~l~~n-~l~~-lp~--~~---------~l 236 (454)
T 1jl5_A 206 S-LKKLPD--LPLS---------------------------------LESIVAGNN-ILEE-LPE--LQ---------NL 236 (454)
T ss_dssp C-CSSCCC--CCTT---------------------------------CCEEECCSS-CCSS-CCC--CT---------TC
T ss_pred c-CCcCCC--CcCc---------------------------------ccEEECcCC-cCCc-ccc--cC---------CC
Confidence 2 111111 1112 444444332 1111 110 00 00
Q ss_pred CCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 453 PPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 453 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++|+.|++++|...+ ++. .+++|+.|++++|. +..+|.. +++|++|++++|. +..++.. .++|+.|+
T Consensus 237 -~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~ 303 (454)
T 1jl5_A 237 -PFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENI-FSGLSEL---PPNLYYLN 303 (454)
T ss_dssp -TTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSEESCC---CTTCCEEE
T ss_pred -CCCCEEECCCCcCCc-ccc---cccccCEEECCCCc-ccccCcc---cCcCCEEECcCCc-cCcccCc---CCcCCEEE
Confidence 347777777765543 222 23677777777743 4445542 3667777777754 3333321 14677777
Q ss_pred eccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCC
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCD 612 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 612 (725)
+++|... .++. ..++|++|++++|. +..++.. +++|++|++++|.... + +. .+++|+.|++++|
T Consensus 304 l~~N~l~-~i~~---~~~~L~~L~Ls~N~-l~~lp~~--~~~L~~L~L~~N~l~~--l---p~---~l~~L~~L~L~~N- 367 (454)
T 1jl5_A 304 ASSNEIR-SLCD---LPPSLEELNVSNNK-LIELPAL--PPRLERLIASFNHLAE--V---PE---LPQNLKQLHVEYN- 367 (454)
T ss_dssp CCSSCCS-EECC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSC--C---CC---CCTTCCEEECCSS-
T ss_pred CcCCcCC-cccC---CcCcCCEEECCCCc-ccccccc--CCcCCEEECCCCcccc--c---cc---hhhhccEEECCCC-
Confidence 7776532 2321 12467777777763 3333322 4667777777764321 1 11 3566777777663
Q ss_pred CCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEecCC
Q 048826 613 DDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIYRC 692 (725)
Q Consensus 613 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 692 (725)
....+|. .+..+..|. .++....+|. .+++|+.|++++|+ ++.++. +|++++.|.+.+|
T Consensus 368 -~l~~l~~------------ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~-l~~~~~--iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 368 -PLREFPD------------IPESVEDLR--MNSHLAEVPE---LPQNLKQLHVETNP-LREFPD--IPESVEDLRMNSE 426 (454)
T ss_dssp -CCSSCCC------------CCTTCCEEE--CCC----------------------------------------------
T ss_pred -CCCcCCC------------ChHHHHhhh--hccccccccc---ccCcCCEEECCCCc-CCcccc--chhhHhheeCcCc
Confidence 2222221 112333332 2334444442 35889999999864 444433 5677888888876
Q ss_pred c
Q 048826 693 P 693 (725)
Q Consensus 693 ~ 693 (725)
.
T Consensus 427 ~ 427 (454)
T 1jl5_A 427 R 427 (454)
T ss_dssp -
T ss_pred c
Confidence 5
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.1e-25 Score=240.95 Aligned_cols=289 Identities=16% Similarity=0.161 Sum_probs=166.4
Q ss_pred hhhhcCCCcEEEEccCCCccc-chhhhhhHHHhhhhhccCCccEEEEecccCccccccc-cCCCCCCcEEEeecCCCccc
Q 048826 251 LLQDICSLKRLTIDSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQS-SLSLSSLREIEIYKCSSLVS 328 (725)
Q Consensus 251 ~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~ 328 (725)
.+..+++|++|++++|. ++. ++.. ..+..+ ++|++|++++|.+.+..|.. +..+++|++|++++|.. +.
T Consensus 98 ~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~l----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~ 168 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCN-LDGAVLSG---NFFKPL----TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KS 168 (455)
T ss_dssp TTTTCTTCCEEECTTSC-CBTHHHHS---STTTTC----TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SC
T ss_pred hccCcccCCEEeCCCCC-CCccccCc---ccccCc----ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-cc
Confidence 34667777777777753 332 2221 113333 67777777777765555554 67777777777777653 22
Q ss_pred cCCCC--C--CCCCceEEeeccCcccccccccc-------cCCCCcccEEEeeccCCccccccc----ccccccceEEee
Q 048826 329 FPEVA--L--PSKLKKIQFRECDALKLLPEAWM-------SDTNSSLEILSIWVCHSLTYLAGV----QLPRSLKRLVIL 393 (725)
Q Consensus 329 ~~~~~--~--l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~ 393 (725)
..... . ..+|+.|+++++.. ..++.... ...+++|++|++++|......+.. ...++++.+++.
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBC-TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred cChhhhhccccccccccccccCcc-cccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 22111 1 25667777766652 22221110 012356666666666432222111 112345555554
Q ss_pred cCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCC-CCCCccEEEEecccchhhhhh
Q 048826 394 NCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGN-LPPSLKSLSVYGCSKLESIAE 472 (725)
Q Consensus 394 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~ 472 (725)
++...... +....++..... .+.. -.++|+.|++++|.+.+..+.
T Consensus 248 ~~~~~~~~---------------------------------~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 248 NSYNMGSS---------------------------------FGHTNFKDPDNF-TFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp TCTTTSCC---------------------------------TTCCSSCCCCTT-TTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred cccccccc---------------------------------cchhhhccCccc-ccccccccCceEEEecCccccccchh
Confidence 44322211 111111100000 0000 013588888888888877777
Q ss_pred hhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCc
Q 048826 473 RLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSL 552 (725)
Q Consensus 473 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 552 (725)
.++.+++|+.|++++|......|..+.++++|++|++++|......+..+..+++|++|++++|......|..+..+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 88888888888888866555556677788888888888876555556667778888888888887655557777888888
Q ss_pred ceeecCCCCCCCCccc--CCCcccccceecccch
Q 048826 553 QQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNM 584 (725)
Q Consensus 553 ~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~ 584 (725)
++|++++|. +..++. ...+++|++|++++|+
T Consensus 374 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 374 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 888888873 333332 2344666666666664
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.1e-24 Score=236.55 Aligned_cols=110 Identities=16% Similarity=-0.011 Sum_probs=93.2
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++|++|++++|.+.+..+..+..+++|+.|++++|......|..+..+++|++|++++|......|..+..+++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 46999999999988888889999999999999997655455777889999999999998776666888899999999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGEL 563 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 563 (725)
++|......+..+..+++|++|++++|+..
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 999855433445689999999999999543
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=5.6e-24 Score=231.22 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=68.1
Q ss_pred CCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCC
Q 048826 29 HKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFP 108 (725)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 108 (725)
++++++|+++++....+|. +. .+++|++|++++| .+..+++++.+++|++|++++|. +..+++ + ..++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~--~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~------~~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VE--YLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-L------ANLT 112 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GG--GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G------TTCT
T ss_pred hccccEEecCCCCCccCcc-hh--hhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh-h------cCCC
Confidence 3677888888777777664 32 2678888888887 67777667788888888888776 555544 2 3377
Q ss_pred CcceeeecccccccccccCCCCCCCCCCCCccEEEeccC
Q 048826 109 CLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRC 147 (725)
Q Consensus 109 ~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c 147 (725)
+|++|+++++ .+++. ..+..+++|++|++++|
T Consensus 113 ~L~~L~L~~n-~l~~~------~~~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 113 NLTGLTLFNN-QITDI------DPLKNLTNLNRLELSSN 144 (466)
T ss_dssp TCCEEECCSS-CCCCC------GGGTTCTTCSEEEEEEE
T ss_pred CCCEEECCCC-CCCCC------hHHcCCCCCCEEECCCC
Confidence 7777777775 34443 12566777777777766
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.7e-24 Score=230.64 Aligned_cols=143 Identities=19% Similarity=0.113 Sum_probs=91.8
Q ss_pred cCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCC
Q 048826 25 MLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSS 104 (725)
Q Consensus 25 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 104 (725)
.+..+++|++|+++++....+| .+.. +++|++|++++| .++.+| ++.+++|++|++++|. ++.++ +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~--l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~------ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEK--LTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--V------ 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGG--CTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--C------
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcc--cCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--c------
Confidence 4445688888888888887776 3443 788888888887 677775 7888888888888886 66653 2
Q ss_pred CCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhh-hhhccCCCccc
Q 048826 105 TPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEEL-LASITCLPALC 183 (725)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l-~~~~~~~~~L~ 183 (725)
..+++|++|+++++ ++++. .+..+++|++|++++| .+++.-...+++|++|++++|..+ ...+..+++|+
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l-------~~~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKL-------DVSQNPLLTYLNCARN-TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCC-------CCTTCTTCCEEECTTS-CCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred CCCCcCCEEECCCC-cCCee-------cCCCCCcCCEEECCCC-ccceeccccCCcCCEEECCCCCcccccccccCCcCC
Confidence 33788888888885 44442 1567788888888877 454221123445555555554322 11234444444
Q ss_pred EEEecCC
Q 048826 184 KLKIYGC 190 (725)
Q Consensus 184 ~L~l~~~ 190 (725)
.|++++|
T Consensus 174 ~L~ls~n 180 (457)
T 3bz5_A 174 TLDCSFN 180 (457)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 4444444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.4e-23 Score=226.06 Aligned_cols=354 Identities=16% Similarity=0.150 Sum_probs=217.8
Q ss_pred CCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCCC
Q 048826 54 FSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQGV 133 (725)
Q Consensus 54 ~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 133 (725)
+++|++|++++| .++.+|.++.+++|++|++++|. ++.++ + ..+++|++|+++++ .+++. .+
T Consensus 41 l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~--~------~~l~~L~~L~Ls~N-~l~~~-------~~ 102 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD--L------SQNTNLTYLACDSN-KLTNL-------DV 102 (457)
T ss_dssp HTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC--C------TTCTTCSEEECCSS-CCSCC-------CC
T ss_pred cCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc--c------ccCCCCCEEECcCC-CCcee-------ec
Confidence 789999999998 78888889999999999999997 77764 2 34888999999885 45442 26
Q ss_pred CCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCCCceeEcccccccCCCCcccccCC
Q 048826 134 EGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDT 213 (725)
Q Consensus 134 ~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (725)
..+++|++|++++| .++ .+| ++.+++|++|++++|....+.
T Consensus 103 ~~l~~L~~L~L~~N-~l~-~l~--------------------~~~l~~L~~L~l~~N~l~~l~----------------- 143 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLT-KLD--------------------VSQNPLLTYLNCARNTLTEID----------------- 143 (457)
T ss_dssp TTCTTCCEEECCSS-CCS-CCC--------------------CTTCTTCCEEECTTSCCSCCC-----------------
T ss_pred CCCCcCCEEECCCC-cCC-eec--------------------CCCCCcCCEEECCCCccceec-----------------
Confidence 77888888888887 444 222 445566666666665422100
Q ss_pred CCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccE
Q 048826 214 SNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEY 293 (725)
Q Consensus 214 ~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~ 293 (725)
+..+++|++|++++|..+..++ +..+ ++|++
T Consensus 144 --------------------------------------l~~l~~L~~L~l~~n~~~~~~~-------~~~l----~~L~~ 174 (457)
T 3bz5_A 144 --------------------------------------VSHNTQLTELDCHLNKKITKLD-------VTPQ----TQLTT 174 (457)
T ss_dssp --------------------------------------CTTCTTCCEEECTTCSCCCCCC-------CTTC----TTCCE
T ss_pred --------------------------------------cccCCcCCEEECCCCCcccccc-------cccC----CcCCE
Confidence 1344566666666655544432 2222 56777
Q ss_pred EEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccC
Q 048826 294 LRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCH 373 (725)
Q Consensus 294 L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 373 (725)
|++++|.+.+ +| ++.+++|+.|++++|. ++.+ +++.+++|+.|++++|. +..++ + ..+++|+.|++++|.
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~-l~~~-~l~~l~~L~~L~Ls~N~-l~~ip--~--~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNN-ITKL-DLNQNIQLTFLDCSSNK-LTEID--V--TPLTQLTYFDCSVNP 244 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSC-CSCC-CCTTCTTCSEEECCSSC-CSCCC--C--TTCTTCSEEECCSSC
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCc-CCee-ccccCCCCCEEECcCCc-ccccC--c--cccCCCCEEEeeCCc
Confidence 7777766533 44 5666777777777664 3333 34556777777777765 33343 1 234666666666653
Q ss_pred CcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCC
Q 048826 374 SLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLP 453 (725)
Q Consensus 374 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~ 453 (725)
++.++ ...+ ++|+.|++++
T Consensus 245 -l~~~~-~~~l---------------------------------~~L~~L~l~~-------------------------- 263 (457)
T 3bz5_A 245 -LTELD-VSTL---------------------------------SKLTTLHCIQ-------------------------- 263 (457)
T ss_dssp -CSCCC-CTTC---------------------------------TTCCEEECTT--------------------------
T ss_pred -CCCcC-HHHC---------------------------------CCCCEEeccC--------------------------
Confidence 11111 0011 1244443322
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
.+|+.|++++|...+.+| ++.+++|+.|++++|..++.+|. ..++|+.|++++| ++|++|++
T Consensus 264 n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L 325 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYL 325 (457)
T ss_dssp CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEEC
T ss_pred CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEEC
Confidence 125666666666555554 45677888888888777777764 3456666666654 47888888
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDD 613 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 613 (725)
++|.... ++ +..+++|+.|++++|. +.. ++.|..|++.+|... ....+..|..++++++ .
T Consensus 326 ~~N~l~~-l~--l~~l~~L~~L~l~~N~-l~~------l~~L~~L~l~~n~l~---------g~~~~~~l~~l~l~~N-~ 385 (457)
T 3bz5_A 326 NNTELTE-LD--VSHNTKLKSLSCVNAH-IQD------FSSVGKIPALNNNFE---------AEGQTITMPKETLTNN-S 385 (457)
T ss_dssp TTCCCSC-CC--CTTCTTCSEEECCSSC-CCB------CTTGGGSSGGGTSEE---------EEEEEEECCCBCCBTT-B
T ss_pred CCCcccc-cc--cccCCcCcEEECCCCC-CCC------ccccccccccCCcEE---------ecceeeecCccccccC-c
Confidence 8887444 43 7788888888888873 332 266777777776432 1134455666666652 2
Q ss_pred CCccCCCCC
Q 048826 614 DMVSFPPEP 622 (725)
Q Consensus 614 ~~~~l~~~~ 622 (725)
....+|..+
T Consensus 386 l~g~ip~~~ 394 (457)
T 3bz5_A 386 LTIAVSPDL 394 (457)
T ss_dssp EEEECCTTC
T ss_pred EEEEcChhH
Confidence 234555543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=4.5e-23 Score=224.13 Aligned_cols=319 Identities=18% Similarity=0.162 Sum_probs=177.2
Q ss_pred CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826 289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS 368 (725)
Q Consensus 289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 368 (725)
++|++|++++|.+.+ ++. +..+++|++|++++|. +..++.+..+++|++|++++|. +..++.. ..+++|++|+
T Consensus 68 ~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQ-ITDIDPL---KNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEE
T ss_pred cCCCEEECCCCccCC-chh-hhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCCC-CCCChHH---cCCCCCCEEE
Confidence 455555555555432 222 5555555555555553 2333334445555555555553 2222221 2335555555
Q ss_pred eeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccc
Q 048826 369 IWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE 448 (725)
Q Consensus 369 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~ 448 (725)
+++|. +..++....+++|+.|.+.+ .+..... ....++|++|+++++. +..+-. +
T Consensus 141 l~~n~-l~~~~~~~~l~~L~~L~l~~--~~~~~~~----------~~~l~~L~~L~l~~n~-l~~~~~---l-------- 195 (466)
T 1o6v_A 141 LSSNT-ISDISALSGLTSLQQLSFGN--QVTDLKP----------LANLTTLERLDISSNK-VSDISV---L-------- 195 (466)
T ss_dssp EEEEE-ECCCGGGTTCTTCSEEEEEE--SCCCCGG----------GTTCTTCCEEECCSSC-CCCCGG---G--------
T ss_pred CCCCc-cCCChhhccCCcccEeecCC--cccCchh----------hccCCCCCEEECcCCc-CCCChh---h--------
Confidence 55552 33333333444555555532 1111110 0112346666666542 222100 1
Q ss_pred cCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcC
Q 048826 449 VGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL 528 (725)
Q Consensus 449 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 528 (725)
..+ ++|++|++++|...+..+ ++.+++|+.|++++|. +..++ .+..+++|++|++++|......+ +..+++|
T Consensus 196 -~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 196 -AKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKL 267 (466)
T ss_dssp -GGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred -ccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence 111 357888888776665544 5667788888887753 44443 46677788888888765433322 5667788
Q ss_pred ceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826 529 TRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI 608 (725)
Q Consensus 529 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 608 (725)
+.|++++|... .++. +..+++|++|++++|. +..++....+++|++|++++|.... . ..+..+++|+.|++
T Consensus 268 ~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 268 TELKLGANQIS-NISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNISD--I----SPVSSLTKLQRLFF 338 (466)
T ss_dssp SEEECCSSCCC-CCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSC--C----GGGGGCTTCCEEEC
T ss_pred CEEECCCCccC-cccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCcCCC--c----hhhccCccCCEeEC
Confidence 88888887643 3333 6777888888888773 3444445556788888888875432 1 12567788888888
Q ss_pred ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826 609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 670 (725)
++| .+..++ . +..+++|+.|++++|+. ..++. +..+++|+.|++++|+
T Consensus 339 ~~n--~l~~~~-~---------l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 339 YNN--KVSDVS-S---------LANLTNINWLSAGHNQI-SDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CSS--CCCCCG-G---------GTTCTTCCEEECCSSCC-CBCGG-GTTCTTCCEEECCCEE
T ss_pred CCC--ccCCch-h---------hccCCCCCEEeCCCCcc-Cccch-hhcCCCCCEEeccCCc
Confidence 774 222222 1 23577888888888654 43333 6778888888888754
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=3.1e-22 Score=218.53 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=32.8
Q ss_pred ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceecc
Q 048826 33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLG 95 (725)
Q Consensus 33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~ 95 (725)
+.++.++.....+|..+ .+++++|++++| .++.+++ +..+++|++|++++|. +..++
T Consensus 14 ~~v~c~~~~l~~ip~~~----~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~ 72 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI----PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVE 72 (477)
T ss_dssp TEEECCSCCCSSCCSCC----CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEEC
T ss_pred CEEEeCCCCcCcCCCCC----CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeC
Confidence 34555555555556543 246667777666 5555543 6666666666666664 44443
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=5.3e-22 Score=207.18 Aligned_cols=304 Identities=18% Similarity=0.172 Sum_probs=152.6
Q ss_pred hhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCC
Q 048826 253 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEV 332 (725)
Q Consensus 253 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 332 (725)
..+++|++|+++++ .++.++. +..+ ++|++|++++|.+. .++. +..+++|++|++++|. ++.++.+
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~------~~~~----~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~-i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG------IEYL----TNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNK-ITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT------GGGC----TTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchh------hhhc----CCccEEEccCCccc-cchh-hhcCCcCCEEEccCCc-ccCchHH
Confidence 46677888888774 4444432 3333 67888888777653 3444 7777788888887774 5555556
Q ss_pred CCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCC
Q 048826 333 ALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSS 412 (725)
Q Consensus 333 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 412 (725)
..+++|++|++++|. +..++.. ..+++|+.|++.+|.....++....+++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~l~~-------------------------- 156 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMTG-------------------------- 156 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGGG---TTCTTCCEEECTTCTTCCCCGGGTTCTT--------------------------
T ss_pred cCCCcCCEEECcCCc-ccCchhh---ccCCceeEEECCCCCCcccccchhhCCC--------------------------
Confidence 667777777777765 3333321 2345566665555543332222222222
Q ss_pred cccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc
Q 048826 413 RRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK 492 (725)
Q Consensus 413 ~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 492 (725)
|+.|++++|...+..+ +..+++|+.|++++|. +.
T Consensus 157 -------------------------------------------L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~ 190 (347)
T 4fmz_A 157 -------------------------------------------LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ-IE 190 (347)
T ss_dssp -------------------------------------------CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC-CC
T ss_pred -------------------------------------------CcEEEecCCCcCCchh--hccCCCCCEEEccCCc-cc
Confidence 4444444433322221 3444445555554432 22
Q ss_pred cccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCc
Q 048826 493 ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLP 572 (725)
Q Consensus 493 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 572 (725)
.++. +..+++|+.+++++|... .++. +..+++|++|++++|... .++. +..+++|++|++++| .+..++....+
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l 264 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTN-QISDINAVKDL 264 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCCCGGGTTC
T ss_pred cccc-ccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCC-ccCCChhHhcC
Confidence 2322 344455555555543222 2211 334445555555555422 2222 455555555555555 22333333444
Q ss_pred ccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826 573 TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS 652 (725)
Q Consensus 573 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 652 (725)
++|++|++++|.... + ..+..+++|+.|++++|. .....+..+ ..+++|+.|++++|+ +..++
T Consensus 265 ~~L~~L~l~~n~l~~--~----~~~~~l~~L~~L~L~~n~-l~~~~~~~l---------~~l~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 265 TKLKMLNVGSNQISD--I----SVLNNLSQLNSLFLNNNQ-LGNEDMEVI---------GGLTNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp TTCCEEECCSSCCCC--C----GGGGGCTTCSEEECCSSC-CCGGGHHHH---------HTCTTCSEEECCSSS-CCCCG
T ss_pred CCcCEEEccCCccCC--C----hhhcCCCCCCEEECcCCc-CCCcChhHh---------hccccCCEEEccCCc-ccccc
Confidence 555555555553321 0 124455666666666531 111111111 245667777777754 44444
Q ss_pred ccccCCcCCCeEeccCCC
Q 048826 653 SSIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 653 ~~~~~~~~L~~L~l~~c~ 670 (725)
. +..+++|+.|++++|+
T Consensus 328 ~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 328 P-LASLSKMDSADFANQV 344 (347)
T ss_dssp G-GGGCTTCSEESSSCC-
T ss_pred C-hhhhhccceeehhhhc
Confidence 3 5667777777777764
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.9e-22 Score=208.19 Aligned_cols=301 Identities=17% Similarity=0.164 Sum_probs=218.5
Q ss_pred CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826 289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS 368 (725)
Q Consensus 289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 368 (725)
++|++|++++|.+. .++ .+..+++|++|++++|. ++.++.+..+++|++|++++|. +..++.. ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n~-i~~~~~~---~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNK-ITDISAL---QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEE
T ss_pred ccccEEEEeCCccc-cch-hhhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCCc-ccCchHH---cCCCcCCEEE
Confidence 89999999998774 444 47889999999999985 5566666778888888888875 4444321 3345666666
Q ss_pred eeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccc
Q 048826 369 IWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE 448 (725)
Q Consensus 369 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~ 448 (725)
+++|. +..++. ...+
T Consensus 117 l~~n~-i~~~~~--------------------------------------------------------~~~l-------- 131 (347)
T 4fmz_A 117 LNEDN-ISDISP--------------------------------------------------------LANL-------- 131 (347)
T ss_dssp CTTSC-CCCCGG--------------------------------------------------------GTTC--------
T ss_pred CcCCc-ccCchh--------------------------------------------------------hccC--------
Confidence 65542 110000 0000
Q ss_pred cCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcC
Q 048826 449 VGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL 528 (725)
Q Consensus 449 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 528 (725)
++|+.|++++|.....++. +..+++|++|++++|. +..++. +..+++|++|++++|. +..++. +..+++|
T Consensus 132 -----~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 132 -----TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSL 201 (347)
T ss_dssp -----TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTC
T ss_pred -----CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCcc
Confidence 2477777777765555443 7889999999999965 444443 7789999999999975 444544 6788999
Q ss_pred ceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826 529 TRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI 608 (725)
Q Consensus 529 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 608 (725)
+.+++++|.... ++. +..+++|++|++++|. +..++....+++|++|++++|.... + ..+..+++|+.|++
T Consensus 202 ~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~--~----~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 202 HYFTAYVNQITD-ITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISD--I----NAVKDLTKLKMLNV 272 (347)
T ss_dssp CEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCC--C----GGGTTCTTCCEEEC
T ss_pred ceeecccCCCCC-Cch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCC--C----hhHhcCCCcCEEEc
Confidence 999999997543 433 7889999999999994 4444546677999999999996542 1 34778999999999
Q ss_pred ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEE
Q 048826 609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLH 688 (725)
Q Consensus 609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 688 (725)
++| .+..++. +..+++|+.|++++|+.....+..+..+++|+.|++++|+ ++.+++...+++|++|+
T Consensus 273 ~~n--~l~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 339 (347)
T 4fmz_A 273 GSN--QISDISV----------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSAD 339 (347)
T ss_dssp CSS--CCCCCGG----------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEES
T ss_pred cCC--ccCCChh----------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceee
Confidence 995 3333332 2368999999999986555666677899999999999986 56665555578999999
Q ss_pred ecCCc
Q 048826 689 IYRCP 693 (725)
Q Consensus 689 l~~c~ 693 (725)
+++|+
T Consensus 340 l~~N~ 344 (347)
T 4fmz_A 340 FANQV 344 (347)
T ss_dssp SSCC-
T ss_pred hhhhc
Confidence 99986
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=7.5e-22 Score=209.41 Aligned_cols=292 Identities=16% Similarity=0.153 Sum_probs=208.4
Q ss_pred hhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCc
Q 048826 247 SHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSL 326 (725)
Q Consensus 247 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 326 (725)
.+..++..+++|++|+++++ .++.+++.. +..+ ++|++|++++|.+.+..+..++.+++|++|++++|. +
T Consensus 60 l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 129 (390)
T 3o6n_A 60 LPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-L 129 (390)
T ss_dssp ECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred CChhHhcccccCcEEECCCC-cccccChhh----ccCC----CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-c
Confidence 44556688889999999885 566665532 4444 789999999988866666778889999999999875 5
Q ss_pred cccCC--CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccccccceEEeecCCCccccccc
Q 048826 327 VSFPE--VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTME 404 (725)
Q Consensus 327 ~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 404 (725)
+.++. +..+++|++|++++|......+..+ ..+++|++|++++|. ++.+ ....+++|+.+++.++. +..+.
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~-~~~~l~~L~~L~l~~n~-l~~~~-- 202 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNR-LTHV-DLSLIPSLFHANVSYNL-LSTLA-- 202 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECCSSC-CSBC-CGGGCTTCSEEECCSSC-CSEEE--
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECCCCc-CCcc-ccccccccceeeccccc-ccccC--
Confidence 56654 3458889999998887433333333 345889999998874 3333 23455678888877653 22211
Q ss_pred cccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEE
Q 048826 405 EGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYIN 484 (725)
Q Consensus 405 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 484 (725)
..+.+++|+++++ .+.. ++.. .+++|+.|++++|...+. ..+..+++|+.|+
T Consensus 203 -----------~~~~L~~L~l~~n-~l~~-~~~~-------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 203 -----------IPIAVEELDASHN-SINV-VRGP-------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVD 254 (390)
T ss_dssp -----------CCSSCSEEECCSS-CCCE-EECC-------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred -----------CCCcceEEECCCC-eeee-cccc-------------ccccccEEECCCCCCccc--HHHcCCCCccEEE
Confidence 1134888888774 3333 2211 114699999999977664 4678899999999
Q ss_pred ecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCC
Q 048826 485 ISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELP 564 (725)
Q Consensus 485 l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 564 (725)
+++|......|..+..+++|++|++++| .+..++.....+++|++|++++|. +..+|..+..+++|++|++++|. +.
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~ 331 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IV 331 (390)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CC
T ss_pred CCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cc
Confidence 9997655556778888999999999985 456677777788899999999997 45677778888999999999985 44
Q ss_pred CcccCCCcccccceecccchhhH
Q 048826 565 SLEEDGLPTNLHSLWIEDNMEIW 587 (725)
Q Consensus 565 ~~~~~~~~~~L~~L~l~~n~~~~ 587 (725)
.++ ...+++|++|++++|+...
T Consensus 332 ~~~-~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 332 TLK-LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCC-CCTTCCCSEEECCSSCEEH
T ss_pred eeC-chhhccCCEEEcCCCCccc
Confidence 444 4456889999999987654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=6.5e-22 Score=209.91 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=86.3
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++|++|++++|.+.+..+..+..+++|+.|++++| .+..+|..+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEEC
Confidence 45999999999888887888999999999999995 566677777889999999999974 5577777778899999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
++|+. ..++ +..+++|++|++++|+
T Consensus 326 ~~N~i-~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 326 DHNSI-VTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred CCCcc-ceeC--chhhccCCEEEcCCCC
Confidence 99984 4444 6788999999999984
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=213.88 Aligned_cols=177 Identities=18% Similarity=0.243 Sum_probs=134.2
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++|++|++++|...+..+..+..+++|+.|++++|......+..+..+++|+.|++++|+....++.......+|+.|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 35999999999887777778899999999999997655555557888999999999999988888887777779999999
Q ss_pred ccccCccccc-cccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 534 LDCKRLEALP-KGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 534 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
++|.. +.+| ..+..+++|++|++++|. +..++. ...+++|++|++++|.... + .+..+..+++|+.|++++
T Consensus 232 ~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--~--~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 232 THCNL-TAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAV--V--EPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp ESSCC-CSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSE--E--CTTTBTTCTTCCEEECCS
T ss_pred cCCcc-cccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccce--E--CHHHhcCcccCCEEECCC
Confidence 99974 4555 467889999999999985 333332 3445888899998886432 1 124577788888888888
Q ss_pred CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCc
Q 048826 611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFP 646 (725)
Q Consensus 611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 646 (725)
| .+..++... +..+++|+.|++++|+
T Consensus 306 N--~l~~~~~~~--------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 306 N--QLTTLEESV--------FHSVGNLETLILDSNP 331 (477)
T ss_dssp S--CCSCCCGGG--------BSCGGGCCEEECCSSC
T ss_pred C--cCceeCHhH--------cCCCcccCEEEccCCC
Confidence 3 444555433 2356788888888865
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4.6e-21 Score=214.70 Aligned_cols=308 Identities=15% Similarity=0.136 Sum_probs=230.7
Q ss_pred CCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccc
Q 048826 227 LPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLP 306 (725)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~ 306 (725)
+.+++.+.+.+..- ...+..++..+++|++|++++| .++.+++.. +..+ ++|++|+|++|.+.+..|
T Consensus 50 l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCT
T ss_pred CCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCC-CCCCCChHH----hcCC----CCCCEEECCCCcCCCCCH
Confidence 45566666655432 3467777899999999999996 577766532 4455 899999999999877777
Q ss_pred cccCCCCCCcEEEeecCCCccccCC--CCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCcccccccccc
Q 048826 307 QSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGVQLP 384 (725)
Q Consensus 307 ~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 384 (725)
..++.+++|++|++++|. ++.++. ++.+++|++|++++|......+..+ ..+++|+.|++++|. ++.++ ...+
T Consensus 117 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~-~~~l 191 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLSSNR-LTHVD-LSLI 191 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECTTSC-CSBCC-GGGC
T ss_pred HHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECcCCC-CCCcC-hhhh
Confidence 788999999999999986 556664 3568999999999997544444333 345899999999984 44442 3456
Q ss_pred cccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecc
Q 048826 385 RSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGC 464 (725)
Q Consensus 385 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~ 464 (725)
++|+.|++.++.- ..+. ..++|++|+++++ .+.. ++.. .+++|+.|++++|
T Consensus 192 ~~L~~L~l~~n~l-~~l~-------------~~~~L~~L~ls~n-~l~~-~~~~-------------~~~~L~~L~L~~n 242 (597)
T 3oja_B 192 PSLFHANVSYNLL-STLA-------------IPIAVEELDASHN-SINV-VRGP-------------VNVELTILKLQHN 242 (597)
T ss_dssp TTCSEEECCSSCC-SEEE-------------CCTTCSEEECCSS-CCCE-EECS-------------CCSCCCEEECCSS
T ss_pred hhhhhhhcccCcc-cccc-------------CCchhheeeccCC-cccc-cccc-------------cCCCCCEEECCCC
Confidence 7889998887532 2221 1135889988874 3333 2111 1246999999999
Q ss_pred cchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc
Q 048826 465 SKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK 544 (725)
Q Consensus 465 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 544 (725)
.+.+. ..++.+++|+.|++++|......|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.. ..+|.
T Consensus 243 ~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~ 318 (597)
T 3oja_B 243 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVER 318 (597)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCC-CCCGG
T ss_pred CCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCC-CccCc
Confidence 87763 578899999999999977666668889999999999999964 556777778899999999999984 47888
Q ss_pred ccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhH
Q 048826 545 GLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIW 587 (725)
Q Consensus 545 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~ 587 (725)
.+..+++|++|++++|. +..++ ...+++|+.|++++|+...
T Consensus 319 ~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp GHHHHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEH
T ss_pred ccccCCCCCEEECCCCC-CCCcC-hhhcCCCCEEEeeCCCCCC
Confidence 88889999999999995 34443 4456899999999997643
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3.5e-20 Score=207.53 Aligned_cols=84 Identities=12% Similarity=0.064 Sum_probs=61.5
Q ss_pred hcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--
Q 048826 254 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-- 331 (725)
Q Consensus 254 ~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-- 331 (725)
.+.+++.++++++ .++.+|+.. +..+ ++|++|+|++|.+.+..+..++.+++|++|+|++|. ++.+++
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAAL----LDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHH----HHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCceEEEeeCC-CCCCcCHHH----HccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 4578889999884 677777643 4444 789999999988866666688889999999999886 444443
Q ss_pred CCCCCCCceEEeeccC
Q 048826 332 VALPSKLKKIQFRECD 347 (725)
Q Consensus 332 ~~~l~~L~~L~l~~~~ 347 (725)
++.+++|++|++++|.
T Consensus 119 ~~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 119 FQNVPLLTVLVLERND 134 (597)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HcCCCCCCEEEeeCCC
Confidence 3457777777777765
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=8.5e-22 Score=221.53 Aligned_cols=205 Identities=11% Similarity=0.038 Sum_probs=124.5
Q ss_pred CCccEEEEecccchhhhh-hhhcCCCCccEEEecCCCCcccccccccCCCcccEEEecc----------CCCccc--cCC
Q 048826 454 PSLKSLSVYGCSKLESIA-ERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQR----------CGNLES--FPE 520 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~----------~~~~~~--~~~ 520 (725)
++|++|++++|...+... ..+..+++|+.|+++++.....++.....+++|++|++++ |..+.. ++.
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 468888888887554433 4467888888888874322233444445678888888884 544432 222
Q ss_pred CCcCcCcCceeeeccccCccccccccC-CCCCcceeecCC---CCCCCCccc-------CCCcccccceecccchh-hHH
Q 048826 521 GGLLCAKLTRLTILDCKRLEALPKGLH-NLTSLQQLTIGK---GGELPSLEE-------DGLPTNLHSLWIEDNME-IWK 588 (725)
Q Consensus 521 ~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~---~~~l~~~~~-------~~~~~~L~~L~l~~n~~-~~~ 588 (725)
....+++|++|++..+......+..+. .+++|++|++++ |..+...+. ...+++|++|+++.|.. +.+
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 234577888888865554444444443 378888888873 334443211 22357888888876542 222
Q ss_pred HHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccc--ccccccCCcCCCeEec
Q 048826 589 SMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER--LSSSIVDLQNLTSLYL 666 (725)
Q Consensus 589 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--i~~~~~~~~~L~~L~l 666 (725)
.... .....+++|+.|++++|......++... ..+++|++|++++|+ ++. ++..+..+++|+.|++
T Consensus 453 ~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~---------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 453 LGLS--YIGQYSPNVRWMLLGYVGESDEGLMEFS---------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp HHHH--HHHHSCTTCCEEEECSCCSSHHHHHHHH---------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred HHHH--HHHHhCccceEeeccCCCCCHHHHHHHH---------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 2222 2234578899999987532222222211 246889999999987 432 3333356889999999
Q ss_pred cCCC
Q 048826 667 LDCP 670 (725)
Q Consensus 667 ~~c~ 670 (725)
++|+
T Consensus 521 s~n~ 524 (592)
T 3ogk_B 521 QGYR 524 (592)
T ss_dssp ESCB
T ss_pred cCCc
Confidence 9986
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1e-21 Score=220.91 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=69.9
Q ss_pred CccEEEEecccchhhhhhhhcC-CCCccEEEecC---CCCcccc------cccccCCCcccEEEeccCCC-cc-c-cCCC
Q 048826 455 SLKSLSVYGCSKLESIAERLDN-NTSLEYINISN---CENLKIL------PSGLHNLRQLQEITIQRCGN-LE-S-FPEG 521 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~l~~---~~~~~~l------~~~~~~l~~L~~L~l~~~~~-~~-~-~~~~ 521 (725)
+|++|+++.+.+.+..+..++. +++|+.|++++ |+.++.. +..+.++++|+.|++++|.. +. . +...
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 4667777666555555555543 66777777752 3344432 22244567777777765432 11 1 1111
Q ss_pred CcCcCcCceeeeccccCcc-ccccccCCCCCcceeecCCCCCCCCc--c-cCCCcccccceecccch
Q 048826 522 GLLCAKLTRLTILDCKRLE-ALPKGLHNLTSLQQLTIGKGGELPSL--E-EDGLPTNLHSLWIEDNM 584 (725)
Q Consensus 522 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~--~-~~~~~~~L~~L~l~~n~ 584 (725)
...+++|++|++++|.... .++..+..+++|++|++++|. +... + ....+++|++|++++|+
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 2235667777777766432 233344666777777777775 3221 1 12234677777777776
No 43
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.2e-21 Score=220.36 Aligned_cols=83 Identities=13% Similarity=0.214 Sum_probs=37.6
Q ss_pred CccEEEEecccchhhhhhhhcC-CCCccEEEecCCCCcccccccc-cCCCcccEEEeccCCCccccC-CCCcCcCcCcee
Q 048826 455 SLKSLSVYGCSKLESIAERLDN-NTSLEYINISNCENLKILPSGL-HNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRL 531 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 531 (725)
+|++|++++ ...+.....+.. +++|+.|++++|.........+ .++++|++|++++|+...... .....+++|+.|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 456666654 333333333333 5556666665544322211111 335556666665555421111 122334555555
Q ss_pred eeccccC
Q 048826 532 TILDCKR 538 (725)
Q Consensus 532 ~l~~~~~ 538 (725)
++++|+.
T Consensus 512 ~l~~~~~ 518 (594)
T 2p1m_B 512 WMSSCSV 518 (594)
T ss_dssp EEESSCC
T ss_pred eeeCCCC
Confidence 5555553
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=4.1e-20 Score=189.21 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=64.8
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
|+.|++++|.+.+.+|..+..++ |+.|++++|......|..+..+++|+.|++++|.....++. +..+++|++|++++
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN 253 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCS
T ss_pred CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcC
Confidence 45555555544444444444444 55555555443334444455555555555555443333332 34455556666655
Q ss_pred ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccch
Q 048826 536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNM 584 (725)
Q Consensus 536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~ 584 (725)
|.....+|..+..+++|++|++++|.....++....+++|+.+++.+|+
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 5544455555555566666666655332233333444556666666554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=3.9e-19 Score=183.96 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=96.9
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
|++|++++|.+....+..+..+++|+.|++++|.... ..+..+..+ +|++|++++|. +..+|..+. ++|++|++
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l 200 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHL 200 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBC
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEEC
Confidence 4444444444443333345555555555555543321 223334444 56666666543 334444332 46666666
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCcc--cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE--EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
++|......+..+..+++|++|++++|.. ..++ ....+++|++|++++|... ..+..+..+++|+.|++++
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~- 273 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHT- 273 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCS-
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCC-
Confidence 66654444445566666666666666632 2221 1223355555555555332 1123355666677777766
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCccc--ccccccccCCcCCCeEeccCCC
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL--ERLSSSIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~i~~~~~~~~~L~~L~l~~c~ 670 (725)
+.+..++..... ........++|+.|++++|+.. ...+..+..+++|+.+++++|.
T Consensus 274 -N~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 274 -NNITKVGVNDFC--PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -SCCCBCCTTSSS--CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -CCCCccChhHcc--ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 233333332110 0000012456777777776533 2334455667777777777653
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.6e-19 Score=185.22 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=55.6
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcC------cCc
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLL------CAK 527 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~------l~~ 527 (725)
+|+.|++++|.+.+..+..+..+++|+.|++++| .+..+|..+..+++|++|++++|+. +.++. .+.. .++
T Consensus 218 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCC
T ss_pred CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCC-CccChhHcccccccccccc
Confidence 3666666666555555555666666777777664 3446666666666666666666543 33322 1111 245
Q ss_pred CceeeeccccCc--cccccccCCCCCcceeecCCC
Q 048826 528 LTRLTILDCKRL--EALPKGLHNLTSLQQLTIGKG 560 (725)
Q Consensus 528 L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~ 560 (725)
|+.|++.+|+.. ...|..+..+++|+.+++++|
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 566666666533 233344555555555555554
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3.7e-19 Score=183.99 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=34.1
Q ss_pred hhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCC
Q 048826 253 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCS 324 (725)
Q Consensus 253 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 324 (725)
..+++|++|+++++ .++.++... +++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 97 ~~l~~L~~L~Ls~n-~l~~l~~~~-----------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 97 APLVKLERLYLSKN-QLKELPEKM-----------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp TTCTTCCEEECCSS-CCSBCCSSC-----------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-cCCccChhh-----------cccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 45566666666663 344444321 1466666666666544444455666666666666654
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=7.1e-19 Score=181.89 Aligned_cols=129 Identities=13% Similarity=0.124 Sum_probs=59.4
Q ss_pred CCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826 478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI 557 (725)
Q Consensus 478 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 557 (725)
++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|++++|. +..+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEEC
Confidence 455555555543322223445555555555555544333333344455555555555554 3355555555566666666
Q ss_pred CCCCCCCCcccCC--------CcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 558 GKGGELPSLEEDG--------LPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 558 ~~~~~l~~~~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
++|. +..++... ..++++.|++.+|+.....+. +..+.++.+|+.+++++
T Consensus 271 ~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~--~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ--PSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC--GGGGTTCCCGGGEEC--
T ss_pred CCCc-CCccChhhcCCcccccccccccceEeecCcccccccC--ccccccccceeEEEecc
Confidence 6552 22222111 124555555555543221111 13444555555555544
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.3e-19 Score=186.67 Aligned_cols=216 Identities=24% Similarity=0.301 Sum_probs=101.7
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
++.|++++|.+. .+|..++.+++|++|++++|. +..+|..+..+++|++|++++|.. ..+|..+..+++|++|++++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECCC
Confidence 444444444332 333334444444444444432 224444444444444444444322 24444444444444444444
Q ss_pred ccCccccccccCC---------CCCcceeecCCCCCCCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcE
Q 048826 536 CKRLEALPKGLHN---------LTSLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRR 605 (725)
Q Consensus 536 ~~~~~~~~~~~~~---------l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~ 605 (725)
|...+.+|..+.. +++|++|++++|. +..++. .+.+++|++|++++|.... .+..+..+++|++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEE 233 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCE
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCE
Confidence 4444444433322 4444444444442 112221 2223444444444443221 1123455566666
Q ss_pred EEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCC-Ccccc
Q 048826 606 LTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKG-LPSSL 684 (725)
Q Consensus 606 L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~L 684 (725)
|++++| .....+|..++ .+++|+.|++++|+.++.+|..+..+++|+.|++++|+.++.+|... .+++|
T Consensus 234 L~Ls~n-~~~~~~p~~~~---------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 234 LDLRGC-TALRNYPPIFG---------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp EECTTC-TTCCBCCCCTT---------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred EECcCC-cchhhhHHHhc---------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 666653 33444454442 45666666666666666666666666666666666666666665532 24555
Q ss_pred cEEEec
Q 048826 685 LQLHIY 690 (725)
Q Consensus 685 ~~L~l~ 690 (725)
+.+++.
T Consensus 304 ~~l~l~ 309 (328)
T 4fcg_A 304 CIILVP 309 (328)
T ss_dssp CEEECC
T ss_pred eEEeCC
Confidence 555544
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=2.3e-20 Score=191.08 Aligned_cols=227 Identities=15% Similarity=0.104 Sum_probs=162.4
Q ss_pred CCccEEEEec-ccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYG-CSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++|++|++++ |...+.+|..++.+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 4688888884 777777777888888888888888665557777788888888888888766667777777888888888
Q ss_pred eccccCccccccccCCCC-CcceeecCCCCCCCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 533 ILDCKRLEALPKGLHNLT-SLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
+++|.....+|..+..++ +|++|++++|.....++. ...++ |++|++++|..... .+..+..+++|+.|++++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCS
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCC
Confidence 888876667777777777 888888888743222222 22223 88888888864321 124567788888888888
Q ss_pred CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEEec
Q 048826 611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLHIY 690 (725)
Q Consensus 611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 690 (725)
|. ....+|. . ..+++|++|++++|.....+|..+..+++|+.|++++|+....+|....+++|+.+++.
T Consensus 231 N~-l~~~~~~-~---------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 231 NS-LAFDLGK-V---------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp SE-ECCBGGG-C---------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred Cc-eeeecCc-c---------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 42 1222222 2 25688888888886654478887888888888988887655567776667888888888
Q ss_pred CCchhH
Q 048826 691 RCPLIE 696 (725)
Q Consensus 691 ~c~~l~ 696 (725)
+++.+.
T Consensus 300 ~N~~lc 305 (313)
T 1ogq_A 300 NNKCLC 305 (313)
T ss_dssp SSSEEE
T ss_pred CCCCcc
Confidence 887664
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=3.1e-22 Score=217.74 Aligned_cols=268 Identities=18% Similarity=0.149 Sum_probs=135.4
Q ss_pred CCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCC-----cCCC-CCCCCccceeeecCcccceeccccccCCC
Q 048826 29 HKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCT-----TWPS-VGQLPSLKHLAVSGMSKVKRLGSEFYGND 102 (725)
Q Consensus 29 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 102 (725)
+++|++|+++++.....+..-....+++|++|++++| .++ .++. +..+++|++|++++|. +.+........
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~- 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQ- 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHH-
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHH-
Confidence 4678889998888654331100123788999999988 465 3444 6778889999998886 54432211111
Q ss_pred CCCCCC----CcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhh-cc
Q 048826 103 SSTPFP----CLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLAS-IT 177 (725)
Q Consensus 103 ~~~~~~----~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~-~~ 177 (725)
.++ +|++|+++++ .+.+......+..+..+++|++|++++|. +++..+. .+... ..
T Consensus 79 ---~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~--------------~l~~~l~~ 139 (461)
T 1z7x_W 79 ---GLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQ--------------LLCEGLLD 139 (461)
T ss_dssp ---TTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHH--------------HHHHHHTS
T ss_pred ---HHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHH--------------HHHHHHhc
Confidence 122 5777777775 23321000002233556666666666662 3211000 00111 22
Q ss_pred CCCcccEEEecCCCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCC
Q 048826 178 CLPALCKLKIYGCKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICS 257 (725)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 257 (725)
..++|++|++++|...... .......+..+++
T Consensus 140 ~~~~L~~L~L~~n~l~~~~------------------------------------------------~~~l~~~l~~~~~ 171 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAAS------------------------------------------------CEPLASVLRAKPD 171 (461)
T ss_dssp TTCCCCEEECTTSCCBGGG------------------------------------------------HHHHHHHHHHCTT
T ss_pred CCCcceEEECCCCCCCHHH------------------------------------------------HHHHHHHHhhCCC
Confidence 3456777777766422100 0011223355666
Q ss_pred CcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccc----cccccCCCCCCcEEEeecCCCccccC---
Q 048826 258 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVK----LPQSSLSLSSLREIEIYKCSSLVSFP--- 330 (725)
Q Consensus 258 L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~--- 330 (725)
|++|++++|. ++......+.. .+....++|++|++++|.+... ++..+..+++|++|++++|. ++...
T Consensus 172 L~~L~L~~n~-i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~ 246 (461)
T 1z7x_W 172 FKELTVSNND-INEAGVRVLCQ---GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAE 246 (461)
T ss_dssp CCEEECCSSB-CHHHHHHHHHH---HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHH
T ss_pred CCEEECcCCC-cchHHHHHHHH---HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHH
Confidence 6667666653 33322221111 1111124667777776665432 45555666677777777664 22211
Q ss_pred ---C-CCCCCCCceEEeeccCcccc----cccccccCCCCcccEEEeeccC
Q 048826 331 ---E-VALPSKLKKIQFRECDALKL----LPEAWMSDTNSSLEILSIWVCH 373 (725)
Q Consensus 331 ---~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~ 373 (725)
. ...+++|++|++++|..... ++..+ ..+++|++|++++|.
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--RAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCTTCCEEECTTCC
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH--hhCCCcceEECCCCC
Confidence 0 11256677777777642221 22222 123667777776663
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.9e-19 Score=183.95 Aligned_cols=221 Identities=20% Similarity=0.292 Sum_probs=178.7
Q ss_pred CCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccccc
Q 048826 418 SLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG 497 (725)
Q Consensus 418 ~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 497 (725)
+++++|+++++ .++. +|..+..+ ++|++|++++|.+. .+|..++.+++|++|++++|. +..+|..
T Consensus 81 ~~l~~L~L~~n-~l~~------lp~~l~~l------~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~ 145 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQ------FPDQAFRL------SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPAS 145 (328)
T ss_dssp TTCCEEEEESS-CCSS------CCSCGGGG------TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGG
T ss_pred cceeEEEccCC-Cchh------cChhhhhC------CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHH
Confidence 45788888773 2332 23322221 46999999999877 778889999999999999964 5588989
Q ss_pred ccCCCcccEEEeccCCCccccCCCCcC---------cCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCccc
Q 048826 498 LHNLRQLQEITIQRCGNLESFPEGGLL---------CAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE 568 (725)
Q Consensus 498 ~~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 568 (725)
+..+++|++|++++|+..+.+|..+.. +++|++|++++|.. +.+|..+..+++|++|++++|......+.
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence 999999999999999999999887654 89999999999974 48888899999999999999954332233
Q ss_pred CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccc
Q 048826 569 DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNL 648 (725)
Q Consensus 569 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 648 (725)
...+++|++|++++|.... ..+..+..+++|+.|++++| .....+|..++ .+++|+.|++++|+.+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~~---------~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALR----NYPPIFGGRAPLKRLILKDC-SNLLTLPLDIH---------RLTQLEKLDLRGCVNL 290 (328)
T ss_dssp GGGCTTCCEEECTTCTTCC----BCCCCTTCCCCCCEEECTTC-TTCCBCCTTGG---------GCTTCCEEECTTCTTC
T ss_pred hccCCCCCEEECcCCcchh----hhHHHhcCCCCCCEEECCCC-Cchhhcchhhh---------cCCCCCEEeCCCCCch
Confidence 5566899999999997653 12356888999999999994 56777887764 6899999999999999
Q ss_pred ccccccccCCcCCCeEeccC
Q 048826 649 ERLSSSIVDLQNLTSLYLLD 668 (725)
Q Consensus 649 ~~i~~~~~~~~~L~~L~l~~ 668 (725)
+.+|..+..+++|+.+++..
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCG
T ss_pred hhccHHHhhccCceEEeCCH
Confidence 99999999999999999986
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=7.1e-21 Score=206.96 Aligned_cols=230 Identities=20% Similarity=0.137 Sum_probs=122.3
Q ss_pred CccEEEEecccchhhhhhhhc-----CCCCccEEEecCCCCccc----ccccccCCCcccEEEeccCCCccc----c-CC
Q 048826 455 SLKSLSVYGCSKLESIAERLD-----NNTSLEYINISNCENLKI----LPSGLHNLRQLQEITIQRCGNLES----F-PE 520 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~l~~~~~~~~----~-~~ 520 (725)
+|++|++++|.+.+..+..+. ..++|++|++++|..... ++..+..+++|++|++++|..... + +.
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 466666666655444333332 245666666666543321 344455566666676666542221 1 11
Q ss_pred CCcCcCcCceeeeccccCccc----cccccCCCCCcceeecCCCCCCCCc-----cc--CCCcccccceecccchhhHHH
Q 048826 521 GGLLCAKLTRLTILDCKRLEA----LPKGLHNLTSLQQLTIGKGGELPSL-----EE--DGLPTNLHSLWIEDNMEIWKS 589 (725)
Q Consensus 521 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~-----~~--~~~~~~L~~L~l~~n~~~~~~ 589 (725)
....+++|++|++++|..... ++..+..+++|++|++++|. +... .. ....++|++|++++|......
T Consensus 251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 122355677777777653322 44555566777777777763 2211 00 111247777777777644322
Q ss_pred HhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccC-CCCCCcEEEeccCcccc-----cccccccCCcCCCe
Q 048826 590 MIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLP-LPASLTSLWISNFPNLE-----RLSSSIVDLQNLTS 663 (725)
Q Consensus 590 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~-----~i~~~~~~~~~L~~ 663 (725)
....+..+..+++|++|++++|.... ..+..+.. .+. ..++|+.|++++|. ++ .++..+..+++|+.
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~-----~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQ-----GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHH-----HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHH-----HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccE
Confidence 22222345667788888888742111 00110000 000 14688999998864 55 67777778899999
Q ss_pred EeccCCCCCcccCCC-------CCcccccEEEecCCc
Q 048826 664 LYLLDCPKLRYFPEK-------GLPSSLLQLHIYRCP 693 (725)
Q Consensus 664 L~l~~c~~l~~l~~~-------~~~~~L~~L~l~~c~ 693 (725)
|++++|+ +...... .....|+.|.+.++.
T Consensus 403 L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 403 LDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp EECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred EECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 9999874 3321110 012357778776654
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=1.7e-20 Score=210.94 Aligned_cols=405 Identities=14% Similarity=0.095 Sum_probs=203.3
Q ss_pred CCccceeeeccccchhHHhh-----------hhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEE
Q 048826 227 LPKLEELEINDMKEQTYIWK-----------SHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLR 295 (725)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~ 295 (725)
+++|++|.+.+++....... ....+...+++|++|++++|. ++... +..+....++|++|+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~-------~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDC-------LELIAKSFKNFKVLV 136 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHH-------HHHHHHHCTTCCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHH-------HHHHHHhCCCCcEEe
Confidence 56677777776654433211 112334566777777777753 33211 112221126777777
Q ss_pred EecccCccc--cccccCCCCCCcEEEeecCCCccc-----cCCC-CCCCCCceEEeeccC-ccc--ccccccccCCCCcc
Q 048826 296 LRYCKGLVK--LPQSSLSLSSLREIEIYKCSSLVS-----FPEV-ALPSKLKKIQFRECD-ALK--LLPEAWMSDTNSSL 364 (725)
Q Consensus 296 L~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~-----~~~~-~~l~~L~~L~l~~~~-~~~--~~~~~~~~~~~~~L 364 (725)
|++|...+. ++....++++|++|++++|. ++. ++.. ..+++|++|++++|. .+. .+.... ..+++|
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~--~~~~~L 213 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV--TRCPNL 213 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH--HHCTTC
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH--HhCCCC
Confidence 777643332 44444567777777777765 222 1111 135677777777664 111 111111 124667
Q ss_pred cEEEeeccCCccccccc-ccccccceEEeecCCC-ccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccc
Q 048826 365 EILSIWVCHSLTYLAGV-QLPRSLKRLVILNCDN-IRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPA 442 (725)
Q Consensus 365 ~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~ 442 (725)
++|++.+|..+..++.. ...++|+.|.+..+.. +..... .+... .....++|+.+. ++.. .....++.
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~l~~---~l~~~~~L~~Ls--~~~~----~~~~~l~~ 283 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY-SGLSV---ALSGCKELRCLS--GFWD----AVPAYLPA 283 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH-HHHHH---HHHTCTTCCEEE--CCBT----CCGGGGGG
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH-HHHHH---HHhcCCCccccc--CCcc----cchhhHHH
Confidence 77777766444433222 3345666666554432 000000 00000 000112233331 1100 11111221
Q ss_pred cccccccCCCCCCccEEEEecccchhhh-hhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccC--------C
Q 048826 443 TLESLEVGNLPPSLKSLSVYGCSKLESI-AERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRC--------G 513 (725)
Q Consensus 443 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~--------~ 513 (725)
.... .++|++|++++|...+.. ...+..+++|+.|++++|.....++.....+++|++|++.+| .
T Consensus 284 ~~~~------~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 284 VYSV------CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp GHHH------HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSS
T ss_pred HHHh------hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCC
Confidence 1111 146899999888755443 334567889999999886222223333345788999988543 2
Q ss_pred Ccccc--CCCCcCcCcCceeeeccccCcccccccc-CCCCCcceeecC-----CCCCCCCccc-------CCCcccccce
Q 048826 514 NLESF--PEGGLLCAKLTRLTILDCKRLEALPKGL-HNLTSLQQLTIG-----KGGELPSLEE-------DGLPTNLHSL 578 (725)
Q Consensus 514 ~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~-----~~~~l~~~~~-------~~~~~~L~~L 578 (725)
.+... ......+++|+.|.+..+......+..+ ..+++|++|+++ +|..+...+. ...+++|++|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence 22211 1111236788888776555433333333 357888888888 4445543221 2235788888
Q ss_pred ecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccC
Q 048826 579 WIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVD 657 (725)
Q Consensus 579 ~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~ 657 (725)
+++++ .....+. .....+++|+.|++++|......+.. + ...+++|+.|++++|+.-..... .+..
T Consensus 438 ~L~~~-l~~~~~~---~l~~~~~~L~~L~L~~~~i~~~~~~~-l--------~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 438 SLSGL-LTDKVFE---YIGTYAKKMEMLSVAFAGDSDLGMHH-V--------LSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp ECCSS-CCHHHHH---HHHHHCTTCCEEEEESCCSSHHHHHH-H--------HHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred eecCc-ccHHHHH---HHHHhchhccEeeccCCCCcHHHHHH-H--------HhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 88762 2211111 11224778888888875321111110 0 01367888888888765222222 2345
Q ss_pred CcCCCeEeccCCCC
Q 048826 658 LQNLTSLYLLDCPK 671 (725)
Q Consensus 658 ~~~L~~L~l~~c~~ 671 (725)
+++|+.|++++|+.
T Consensus 505 l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 505 LETMRSLWMSSCSV 518 (594)
T ss_dssp GGGSSEEEEESSCC
T ss_pred CCCCCEEeeeCCCC
Confidence 78888888888865
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=177.38 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=41.8
Q ss_pred ccEEEEecccchh----hhhhhhcCCCCccEEEecCCCCcccccccc-cCCCcccEEEeccCCCccc
Q 048826 456 LKSLSVYGCSKLE----SIAERLDNNTSLEYINISNCENLKILPSGL-HNLRQLQEITIQRCGNLES 517 (725)
Q Consensus 456 L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~-~~l~~L~~L~l~~~~~~~~ 517 (725)
++.++++++...+ .+|..+..+++|+.|++++| .++.+|..+ ..+++|++|++++|+....
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 4444454444333 46777888899999999885 455777664 6788888888888765443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.7e-17 Score=179.42 Aligned_cols=223 Identities=17% Similarity=0.123 Sum_probs=133.5
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++++.|++++|.+.+..+..+..+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35777777777666666666777777777777775443333455666777777777775433333334566777777777
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
++|......+..+..+++|++|++++|..+..++. ...+++|++|++++|.... + ..+..+++|++|++++|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--M----PNLTPLVGLEELEMSGN 228 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--C----CCCTTCTTCCEEECTTS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--c----ccccccccccEEECcCC
Confidence 77764433333566777777777777655555443 3344677777777775431 1 23556677777777763
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCC--cccccEEEe
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQLHI 689 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l 689 (725)
.+..++... +..+++|+.|++++|......+..+..+++|+.|++++| .++.++...+ +++|+.|++
T Consensus 229 --~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 229 --HFPEIRPGS--------FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp --CCSEECGGG--------GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEEC
T ss_pred --cCcccCccc--------ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEc
Confidence 222222211 235667777777775433333445566777777777774 5556555433 466777777
Q ss_pred cCCc
Q 048826 690 YRCP 693 (725)
Q Consensus 690 ~~c~ 693 (725)
+++|
T Consensus 298 ~~Np 301 (452)
T 3zyi_A 298 HHNP 301 (452)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2.7e-17 Score=177.06 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=128.8
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccC-CCCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l 533 (725)
+++.|++++|.+....+..+..+++|+.|++++|......+..+.++++|++|++++|. +..++ ..+..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeC
Confidence 46777777776666656666677777777777654333333456667777777777653 33333 34566667777777
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
++|......+..+..+++|++|++++|..+..++. ...+++|++|++++|.... + ..+..+++|++|++++|
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~----~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--I----PNLTPLIKLDELDLSGN 217 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--C----CCCTTCSSCCEEECTTS
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--c----cccCCCcccCEEECCCC
Confidence 77664433333566677777777776655554433 2334677777777764431 1 13556667777777763
Q ss_pred CCCCccC-CCCCcccccCcccCCCCCCcEEEeccCcccccc-cccccCCcCCCeEeccCCCCCcccCCCCC--cccccEE
Q 048826 612 DDDMVSF-PPEPEDVRLGTTLPLPASLTSLWISNFPNLERL-SSSIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQL 687 (725)
Q Consensus 612 ~~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L 687 (725)
.+..+ |..+ ..+++|+.|++++|. ++.+ +..+..+++|+.|++++| .++.++...+ +++|+.|
T Consensus 218 --~l~~~~~~~~---------~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 218 --HLSAIRPGSF---------QGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp --CCCEECTTTT---------TTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred --ccCccChhhh---------ccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence 33333 2222 256677777777743 4433 344566677777777774 4555555432 4667777
Q ss_pred EecCCc
Q 048826 688 HIYRCP 693 (725)
Q Consensus 688 ~l~~c~ 693 (725)
+++++|
T Consensus 285 ~L~~Np 290 (440)
T 3zyj_A 285 HLHHNP 290 (440)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 776654
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=2.5e-18 Score=176.42 Aligned_cols=214 Identities=12% Similarity=0.067 Sum_probs=105.0
Q ss_pred CCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEE
Q 048826 289 CRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILS 368 (725)
Q Consensus 289 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 368 (725)
++|++|+|++|.+.+..+..+..+++|++|++++|.. +..+++..+++|++|++++|. +..++. .++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNY-VQELLV------GPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEEETTCTTCCEEECCSSE-EEEEEE------CTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-CcchhhhhcCCCCEEECcCCc-cccccC------CCCcCEEE
Confidence 5667777766666555555666677777777776653 333335556666666666654 222221 14555555
Q ss_pred eeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccc
Q 048826 369 IWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLE 448 (725)
Q Consensus 369 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~ 448 (725)
+++|. ++.++.. .+++ |++|+++++ .++. .....+..
T Consensus 106 l~~n~-l~~~~~~-~~~~---------------------------------L~~L~l~~N-~l~~-~~~~~~~~------ 142 (317)
T 3o53_A 106 AANNN-ISRVSCS-RGQG---------------------------------KKNIYLANN-KITM-LRDLDEGC------ 142 (317)
T ss_dssp CCSSC-CSEEEEC-CCSS---------------------------------CEEEECCSS-CCCS-GGGBCTGG------
T ss_pred CCCCc-cCCcCcc-ccCC---------------------------------CCEEECCCC-CCCC-ccchhhhc------
Confidence 55442 1111100 0111 223322221 1111 00000000
Q ss_pred cCCCCCCccEEEEecccchhhhhhhh-cCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCc
Q 048826 449 VGNLPPSLKSLSVYGCSKLESIAERL-DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAK 527 (725)
Q Consensus 449 ~~~~~~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 527 (725)
.++|+.|++++|.+.+..+..+ ..+++|++|++++|. ++.++. ...+++|++|++++|. +..+|..+..+++
T Consensus 143 ----l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~ 215 (317)
T 3o53_A 143 ----RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAG 215 (317)
T ss_dssp ----GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTT
T ss_pred ----cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCc-CCcchhhhcccCc
Confidence 0246666666665555444444 245666666666643 333332 2235666666666643 3344444555666
Q ss_pred CceeeeccccCccccccccCCCCCcceeecCCCC
Q 048826 528 LTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 528 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
|+.|++++|. ++.+|..+..+++|+.|++++|.
T Consensus 216 L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 216 VTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred ccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 6666666665 33455555566666666666653
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=8.6e-17 Score=178.23 Aligned_cols=256 Identities=23% Similarity=0.226 Sum_probs=169.9
Q ss_pred CCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCCCCCCC
Q 048826 30 KNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPC 109 (725)
Q Consensus 30 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~ 109 (725)
.+++.|+++++....+|..+. ++|++|++++| .++.+|. .+++|++|++++|. ++.+|. .+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---------LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---------CCTT
T ss_pred CCCcEEEecCCCcCccChhhC----CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---------CCCC
Confidence 579999999999999987663 79999999998 7888988 68999999999997 888875 2889
Q ss_pred cceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecC
Q 048826 110 LETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYG 189 (725)
Q Consensus 110 L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~ 189 (725)
|++|+++++ +++.. + ..+++|++|++++| +++ .+|..+++|++|++++|... ..-..+++|+.|++++
T Consensus 103 L~~L~Ls~N-~l~~l-----~---~~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~ 170 (622)
T 3g06_A 103 LLELSIFSN-PLTHL-----P---ALPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYN 170 (622)
T ss_dssp CCEEEECSC-CCCCC-----C---CCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCS
T ss_pred CCEEECcCC-cCCCC-----C---CCCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCC-CcCCccCCCCEEECCC
Confidence 999999985 45543 1 25789999999988 676 78888889999999887532 1112456788888887
Q ss_pred CCceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCc
Q 048826 190 CKKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKL 269 (725)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 269 (725)
|....+ +..+++|+.|.+.++.-.. ++ ..+++|+.|++++| .+
T Consensus 171 N~l~~l----------------------------~~~~~~L~~L~Ls~N~l~~----l~----~~~~~L~~L~L~~N-~l 213 (622)
T 3g06_A 171 NQLTSL----------------------------PMLPSGLQELSVSDNQLAS----LP----TLPSELYKLWAYNN-RL 213 (622)
T ss_dssp SCCSCC----------------------------CCCCTTCCEEECCSSCCSC----CC----CCCTTCCEEECCSS-CC
T ss_pred CCCCCC----------------------------cccCCCCcEEECCCCCCCC----CC----CccchhhEEECcCC-cc
Confidence 764331 2234556666555543211 11 22456666666664 44
Q ss_pred ccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcc
Q 048826 270 QSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDAL 349 (725)
Q Consensus 270 ~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 349 (725)
+.++.. +++|+.|++++|.+. .+| ..+++|+.|++++|. ++.++. .+++|+.|++++|. +
T Consensus 214 ~~l~~~------------~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N~-L 273 (622)
T 3g06_A 214 TSLPAL------------PSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-L 273 (622)
T ss_dssp SSCCCC------------CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-C
T ss_pred cccCCC------------CCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCC-CCcCCc--ccccCcEEeCCCCC-C
Confidence 444321 156666666666553 344 344666666666663 444544 45666666666664 3
Q ss_pred cccccccccCCCCcccEEEeeccC
Q 048826 350 KLLPEAWMSDTNSSLEILSIWVCH 373 (725)
Q Consensus 350 ~~~~~~~~~~~~~~L~~L~l~~~~ 373 (725)
..+|..+. .+++|+.|++.+|+
T Consensus 274 ~~lp~~l~--~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 274 TRLPESLI--HLSSETTVNLEGNP 295 (622)
T ss_dssp CSCCGGGG--GSCTTCEEECCSCC
T ss_pred CcCCHHHh--hccccCEEEecCCC
Confidence 45554432 33566666666654
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=174.75 Aligned_cols=80 Identities=11% Similarity=-0.001 Sum_probs=48.4
Q ss_pred cCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--C
Q 048826 255 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--V 332 (725)
Q Consensus 255 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~ 332 (725)
++.....+.++ ..++.+|.. ++++|++|++++|.+.+..+..+..+++|++|++++|. ++.++. +
T Consensus 30 C~~~~~c~~~~-~~l~~iP~~-----------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 96 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPSG-----------LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSF 96 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCTT-----------CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred CCCCeEeeCCC-CCccccccc-----------ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhc
Confidence 34444455555 456666543 12678888888877654444467778888888887775 344332 4
Q ss_pred CCCCCCceEEeeccC
Q 048826 333 ALPSKLKKIQFRECD 347 (725)
Q Consensus 333 ~~l~~L~~L~l~~~~ 347 (725)
..+++|++|++++|.
T Consensus 97 ~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 97 SSLGSLEHLDLSYNY 111 (353)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCCc
Confidence 446666666666654
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1e-17 Score=169.29 Aligned_cols=221 Identities=18% Similarity=0.205 Sum_probs=142.2
Q ss_pred ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826 33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL 110 (725)
Q Consensus 33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 110 (725)
+.++.++.+...+|..+ .++|++|++++| .++.++. ++.+++|++|++++|. ++.+++..+ ..+++|
T Consensus 14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAF-----TGLALL 82 (285)
T ss_dssp CEEECCSSCCSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT-----TTCTTC
T ss_pred eEEEcCcCCcccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCc-cceeCHhhc-----CCccCC
Confidence 56777777777777544 468999999987 7777774 8889999999999886 676654433 337888
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCC
Q 048826 111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGC 190 (725)
Q Consensus 111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 190 (725)
++|+++++..+.... +..+..+++|++|++++| .+++..| ..+..+++|++|++++|
T Consensus 83 ~~L~l~~n~~l~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~------------------~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVD----PATFHGLGRLHTLHLDRC-GLQELGP------------------GLFRGLAALQYLYLQDN 139 (285)
T ss_dssp CEEECCSCTTCCCCC----TTTTTTCTTCCEEECTTS-CCCCCCT------------------TTTTTCTTCCEEECCSS
T ss_pred CEEeCCCCCCccccC----HHHhcCCcCCCEEECCCC-cCCEECH------------------hHhhCCcCCCEEECCCC
Confidence 888888865465553 455677888888888887 4442222 23555666777777766
Q ss_pred CceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcc
Q 048826 191 KKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQ 270 (725)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 270 (725)
..... +...+..+++|++|+++++ .++
T Consensus 140 ~l~~~----------------------------------------------------~~~~~~~l~~L~~L~l~~n-~l~ 166 (285)
T 1ozn_A 140 ALQAL----------------------------------------------------PDDTFRDLGNLTHLFLHGN-RIS 166 (285)
T ss_dssp CCCCC----------------------------------------------------CTTTTTTCTTCCEEECCSS-CCC
T ss_pred ccccc----------------------------------------------------CHhHhccCCCccEEECCCC-ccc
Confidence 53221 1112345566666666664 455
Q ss_pred cchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCC--CCCCCCCceEEeeccCc
Q 048826 271 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQFRECDA 348 (725)
Q Consensus 271 ~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~l~~L~~L~l~~~~~ 348 (725)
.++... +..+ ++|++|++++|.+.+..|..+..+++|+.|++++|. ++.++. +..+++|+.|++++|+.
T Consensus 167 ~~~~~~----~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 167 SVPERA----FRGL----HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECTTT----TTTC----TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCHHH----hcCc----cccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCc
Confidence 544321 2233 667777777776655556667777777777777764 333332 34466777777776654
Q ss_pred c
Q 048826 349 L 349 (725)
Q Consensus 349 ~ 349 (725)
.
T Consensus 238 ~ 238 (285)
T 1ozn_A 238 V 238 (285)
T ss_dssp E
T ss_pred c
Confidence 3
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.2e-16 Score=175.06 Aligned_cols=155 Identities=24% Similarity=0.248 Sum_probs=80.5
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+|++|++++|.+.+ ++. .+++|+.|++++| .+..+| ..+++|+.|++++|. +..+|.. +++|+.|+++
T Consensus 142 ~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~ 209 (622)
T 3g06_A 142 GLQELSVSDNQLAS-LPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAY 209 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECC
T ss_pred CCCEEECcCCcCCC-cCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECc
Confidence 36666666664433 221 2456777777663 444455 345677777777743 3445432 3567777777
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCC
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD 614 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 614 (725)
+|. +..+|. .+++|++|++++| .+..++ ..+++|++|++++|.... + ...+++|+.|++++| .
T Consensus 210 ~N~-l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~L~~--l------p~~~~~L~~L~Ls~N--~ 272 (622)
T 3g06_A 210 NNR-LTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNRLTS--L------PMLPSGLLSLSVYRN--Q 272 (622)
T ss_dssp SSC-CSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSCCSC--C------CCCCTTCCEEECCSS--C
T ss_pred CCc-ccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCCCCc--C------CcccccCcEEeCCCC--C
Confidence 765 334443 2356677777666 333333 334566666666663321 0 013445555555552 2
Q ss_pred CccCCCCCcccccCcccCCCCCCcEEEeccCcc
Q 048826 615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN 647 (725)
Q Consensus 615 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 647 (725)
+..+|..+. .+++|+.|++++|+.
T Consensus 273 L~~lp~~l~---------~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 273 LTRLPESLI---------HLSSETTVNLEGNPL 296 (622)
T ss_dssp CCSCCGGGG---------GSCTTCEEECCSCCC
T ss_pred CCcCCHHHh---------hccccCEEEecCCCC
Confidence 334443332 345555555555443
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=9.1e-17 Score=172.96 Aligned_cols=200 Identities=18% Similarity=0.187 Sum_probs=151.8
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++|+.|+|++|.+....+..+..+++|++|++++| .++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 46999999998887777788888999999999986 4555544 578889999999998765444445677888999999
Q ss_pred eccccCcccccc-ccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 533 ILDCKRLEALPK-GLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 533 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
+++|.....++. .+..+++|++|++++| .+..++....+++|++|++++|.... + .+..+..+++|++|+++++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSA--I--RPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCE--E--CTTTTTTCTTCCEEECTTC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCc--c--ChhhhccCccCCEEECCCC
Confidence 999777776665 5788899999999998 45566666777899999999986432 1 1256788899999999883
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCC
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~ 670 (725)
.+..++... +..+++|+.|++++| .++.++. .+..+++|+.|++++||
T Consensus 242 --~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 --QIQVIERNA--------FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --CCCEECTTS--------STTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --ceeEEChhh--------hcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 444444332 236789999999995 5666664 45678999999998865
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=2.1e-17 Score=179.50 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=58.7
Q ss_pred HhhhhhccCCccEEEEecccCccccccccCCCCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCC
Q 048826 281 QQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDT 360 (725)
Q Consensus 281 l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 360 (725)
+..+...+++|++|+|++|.+.+..|..++.+++|++|+|++|. ++..+++..+++|++|++++|. +..++..
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~----- 98 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG----- 98 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC-----
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC-----
Confidence 33443334689999999988877667788999999999999886 4444446678888888888875 3333321
Q ss_pred CCcccEEEeecc
Q 048826 361 NSSLEILSIWVC 372 (725)
Q Consensus 361 ~~~L~~L~l~~~ 372 (725)
++|+.|++++|
T Consensus 99 -~~L~~L~L~~N 109 (487)
T 3oja_A 99 -PSIETLHAANN 109 (487)
T ss_dssp -TTCCEEECCSS
T ss_pred -CCcCEEECcCC
Confidence 55666666655
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=1e-16 Score=173.28 Aligned_cols=200 Identities=22% Similarity=0.229 Sum_probs=152.8
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++|+.|++++|.+.+..+..+..+++|++|++++|. +..+| ..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 469999999998887777888899999999999865 45554 4477899999999999765444444677889999999
Q ss_pred eccccCcccccc-ccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 533 ILDCKRLEALPK-GLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 533 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
+++|..++.++. .+..+++|++|++++| .+..++....+++|++|++++|.... + .+..+..+++|+.|++++|
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPE--I--RPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSE--E--CGGGGTTCTTCCEEECTTS
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcc--c--CcccccCccCCCEEEeCCC
Confidence 999877777765 5788999999999998 45556666777899999999996542 1 1246788999999999984
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCC
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~ 670 (725)
.+..++... +..+++|+.|++++| .++.++. .+..+++|+.|++++||
T Consensus 253 --~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 --QVSLIERNA--------FDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --CCCEECTTT--------TTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --cCceECHHH--------hcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 333333322 236789999999995 5666664 45678999999999875
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.1e-16 Score=161.73 Aligned_cols=202 Identities=21% Similarity=0.209 Sum_probs=151.3
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCcccc-CCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESF-PEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 532 (725)
+++++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|..+..+ +..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 46999999999888777778899999999999996544444777889999999999998756666 66788899999999
Q ss_pred eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
+++|......+..+..+++|++|++++|. +..++. ...+++|++|++++|.... ++. ..+..+++|+.|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~--~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS--VPE--RAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE--ECT--TTTTTCTTCCEEECCS
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc--cCH--HHhcCccccCEEECCC
Confidence 99998666567778899999999999984 333332 3456889999998885431 111 3467788888888888
Q ss_pred CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCC
Q 048826 611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPK 671 (725)
Q Consensus 611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~ 671 (725)
| ......|..+ ..+++|+.|++++| .++.++. .+..+++|+.|++++|+.
T Consensus 187 n-~l~~~~~~~~---------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 187 N-RVAHVHPHAF---------RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp S-CCCEECTTTT---------TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred C-cccccCHhHc---------cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 4 2222334443 25788888888885 4555553 467788888888888653
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=9.8e-17 Score=163.87 Aligned_cols=224 Identities=16% Similarity=0.066 Sum_probs=153.8
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCCCCcCcCcCcee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRL 531 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 531 (725)
+++++|++++|.+.+..+..+..+++|++|++++|.... ..+..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 358888888887765545557888889999988864332 124556678888999998864 45666667778889999
Q ss_pred eeccccCccccc-cccCCCCCcceeecCCCCCCCCccc-CCCcccccceecccchhhHHHHhhccccccccCCCcEEEee
Q 048826 532 TILDCKRLEALP-KGLHNLTSLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTII 609 (725)
Q Consensus 532 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 609 (725)
++++|......+ ..+..+++|++|++++|......+. ...+++|++|++++|...... .+..+..+++|++|+++
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLS 183 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECT
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECC
Confidence 998887443322 4678888899999988853322222 344588999999888653211 22567788899999998
Q ss_pred cCCCCCccC-CCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCCCcccCCCC--Cccccc
Q 048826 610 NCDDDMVSF-PPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKG--LPSSLL 685 (725)
Q Consensus 610 ~~~~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~ 685 (725)
+| .+..+ |..+ ..+++|+.|++++|. +..++. .+..+++|+.|++++|+.....+... ++++|+
T Consensus 184 ~n--~l~~~~~~~~---------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 184 QC--QLEQLSPTAF---------NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TS--CCCEECTTTT---------TTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred CC--CcCCcCHHHh---------cCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 84 33333 3333 267899999999854 555543 56778999999999875433333321 235899
Q ss_pred EEEecCCc
Q 048826 686 QLHIYRCP 693 (725)
Q Consensus 686 ~L~l~~c~ 693 (725)
+|++++++
T Consensus 252 ~L~L~~N~ 259 (306)
T 2z66_A 252 FLNLTQND 259 (306)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 99998875
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.3e-16 Score=162.96 Aligned_cols=225 Identities=17% Similarity=0.117 Sum_probs=119.7
Q ss_pred CCccEEEEecccCcccccc-ccCCCCCCcEEEeecCCCcccc----CCCCCCCCCceEEeeccCcccccccccccCCCCc
Q 048826 289 CRLEYLRLRYCKGLVKLPQ-SSLSLSSLREIEIYKCSSLVSF----PEVALPSKLKKIQFRECDALKLLPEAWMSDTNSS 363 (725)
Q Consensus 289 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 363 (725)
++|++|++++|.+. .+|. .++.+++|++|++++|.. +.. .....+++|++|++++|. +..++..+ ..+++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~--~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF--LGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE--ETCTT
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCc-cccChhhc--CCCCC
Confidence 67888888888764 4444 467888888888888753 322 122336777888877775 33344332 23356
Q ss_pred ccEEEeeccCCcccccccccccccceEEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCcccc
Q 048826 364 LEILSIWVCHSLTYLAGVQLPRSLKRLVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPAT 443 (725)
Q Consensus 364 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~ 443 (725)
|++|++++|. ++.++.. ..+..
T Consensus 103 L~~L~l~~n~-l~~~~~~--------------------------------------------------------~~~~~- 124 (306)
T 2z66_A 103 LEHLDFQHSN-LKQMSEF--------------------------------------------------------SVFLS- 124 (306)
T ss_dssp CCEEECTTSE-EESSTTT--------------------------------------------------------TTTTT-
T ss_pred CCEEECCCCc-ccccccc--------------------------------------------------------hhhhh-
Confidence 6666665542 1111000 00000
Q ss_pred ccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcc-cccccccCCCcccEEEeccCCCccccCCCC
Q 048826 444 LESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLK-ILPSGLHNLRQLQEITIQRCGNLESFPEGG 522 (725)
Q Consensus 444 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 522 (725)
+ ++|+.|++++|...+..+..+..+++|++|++++|.... .+|..+..+++|++|++++|......|..+
T Consensus 125 --------l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 125 --------L-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp --------C-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred --------c-cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 0 235555555555555555555556666666666643332 245555566666666666654444445555
Q ss_pred cCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCccc-CC-Ccccccceecccchh
Q 048826 523 LLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE-DG-LPTNLHSLWIEDNME 585 (725)
Q Consensus 523 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~-~~~~L~~L~l~~n~~ 585 (725)
..+++|++|++++|......+..+..+++|++|++++|......+. .. .+++|++|++++|+.
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 5566666666666654333333455566666666666633222111 11 224666666666643
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=2.3e-17 Score=169.25 Aligned_cols=260 Identities=13% Similarity=0.116 Sum_probs=183.7
Q ss_pred eeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCC
Q 048826 232 ELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLS 311 (725)
Q Consensus 232 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~ 311 (725)
.+.+.++..... .......+..+++|++|++++| .++.+++. .+..+ ++|++|+|++|.+.+..+ +..
T Consensus 11 ~l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~--~~~ 78 (317)
T 3o53_A 11 RYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGN-PLSQISAA----DLAPF----TKLELLNLSSNVLYETLD--LES 78 (317)
T ss_dssp EEEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTS-CCCCCCHH----HHTTC----TTCCEEECTTSCCEEEEE--ETT
T ss_pred ceeEeeccccch-hhhHHHHhccCCCCCEEECcCC-ccCcCCHH----HhhCC----CcCCEEECCCCcCCcchh--hhh
Confidence 345555555444 3345566677889999999996 67766553 25555 899999999999865444 889
Q ss_pred CCCCcEEEeecCCCccccCCCCCCCCCceEEeeccCcccccccccccCCCCcccEEEeeccCCccccccc--ccccccce
Q 048826 312 LSSLREIEIYKCSSLVSFPEVALPSKLKKIQFRECDALKLLPEAWMSDTNSSLEILSIWVCHSLTYLAGV--QLPRSLKR 389 (725)
Q Consensus 312 l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~ 389 (725)
+++|++|++++|. ++.++. .++|++|++++|.. ..++.. .+++|++|++++|. ++.+... ..+++|+.
T Consensus 79 l~~L~~L~Ls~n~-l~~l~~---~~~L~~L~l~~n~l-~~~~~~----~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 79 LSTLRTLDLNNNY-VQELLV---GPSIETLHAANNNI-SRVSCS----RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp CTTCCEEECCSSE-EEEEEE---CTTCCEEECCSSCC-SEEEEC----CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEE
T ss_pred cCCCCEEECcCCc-cccccC---CCCcCEEECCCCcc-CCcCcc----ccCCCCEEECCCCC-CCCccchhhhccCCCCE
Confidence 9999999999985 555542 48999999999874 333322 35789999999984 3333221 22344454
Q ss_pred EEeecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhh
Q 048826 390 LVILNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLES 469 (725)
Q Consensus 390 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 469 (725)
|+++++. +.. .....+... .++|++|++++|.+.+.
T Consensus 149 L~Ls~N~----------------------------------l~~-~~~~~~~~~---------l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 149 LDLKLNE----------------------------------IDT-VNFAELAAS---------SDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp EECTTSC----------------------------------CCE-EEGGGGGGG---------TTTCCEEECTTSCCCEE
T ss_pred EECCCCC----------------------------------CCc-ccHHHHhhc---------cCcCCEEECCCCcCccc
Confidence 5444432 221 111111100 13599999999977655
Q ss_pred hhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCc-cccccccCC
Q 048826 470 IAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRL-EALPKGLHN 548 (725)
Q Consensus 470 ~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~ 548 (725)
+ ....+++|+.|++++| .+..+|..+..+++|++|++++| .+..+|..+..+++|+.|++++|+.. ..++..+..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 -K-GQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp -E-CCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred -c-cccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 2 3345899999999995 56677777889999999999996 45678888889999999999999976 566777788
Q ss_pred CCCcceeecCCCC
Q 048826 549 LTSLQQLTIGKGG 561 (725)
Q Consensus 549 l~~L~~L~l~~~~ 561 (725)
+++|+.++++++.
T Consensus 261 ~~~L~~l~l~~~~ 273 (317)
T 3o53_A 261 NQRVQTVAKQTVK 273 (317)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cccceEEECCCch
Confidence 8888888887653
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=5.5e-16 Score=151.98 Aligned_cols=201 Identities=17% Similarity=0.174 Sum_probs=136.8
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccC-CCCcCcCcCcee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRL 531 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 531 (725)
++++.|++++|.+.+..+..+..+++|++|++++|..++.++. .+.++++|++|++++|+.+..++ ..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 3599999999987777666888899999999998765666654 57788999999999855555555 456778889999
Q ss_pred eeccccCccccccccCCCCCcc---eeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCc-EEE
Q 048826 532 TILDCKRLEALPKGLHNLTSLQ---QLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLR-RLT 607 (725)
Q Consensus 532 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~-~L~ 607 (725)
++++|.. +.+|. +..+++|+ +|++++|..+..++. ..+..+++|+ .|+
T Consensus 111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 111 GIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------------NAFQGLCNETLTLK 162 (239)
T ss_dssp EEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------------TTTTTTBSSEEEEE
T ss_pred eCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCc--------------------------ccccchhcceeEEE
Confidence 9988874 44665 66667776 777777744443322 2344566666 666
Q ss_pred eecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCC-cCCCeEeccCCCCCcccCCCCCccccc
Q 048826 608 IINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDL-QNLTSLYLLDCPKLRYFPEKGLPSSLL 685 (725)
Q Consensus 608 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~ 685 (725)
+++ +.+..+|.... ..++|+.|++++|..++.++. .+..+ ++|+.|++++ +.++.+|.. .+++|+
T Consensus 163 l~~--n~l~~i~~~~~---------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~ 229 (239)
T 2xwt_C 163 LYN--NGFTSVQGYAF---------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLK 229 (239)
T ss_dssp CCS--CCCCEECTTTT---------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCS
T ss_pred cCC--CCCcccCHhhc---------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCc
Confidence 665 33345555432 126778888887645666653 45666 7888888887 456666654 467788
Q ss_pred EEEecCCchh
Q 048826 686 QLHIYRCPLI 695 (725)
Q Consensus 686 ~L~l~~c~~l 695 (725)
.|++++++.|
T Consensus 230 ~L~l~~~~~l 239 (239)
T 2xwt_C 230 ELIARNTWTL 239 (239)
T ss_dssp EEECTTC---
T ss_pred eeeccCccCC
Confidence 8888777653
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=162.73 Aligned_cols=221 Identities=17% Similarity=0.101 Sum_probs=151.0
Q ss_pred ccEEEEecccch-hhhhhhhc-------CCCCccEEEecCCCCcccccccc--cCCCcccEEEeccCCCccccCCCCcCc
Q 048826 456 LKSLSVYGCSKL-ESIAERLD-------NNTSLEYINISNCENLKILPSGL--HNLRQLQEITIQRCGNLESFPEGGLLC 525 (725)
Q Consensus 456 L~~L~L~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l 525 (725)
|+.|++++|.+. ..++..+. .+++|++|++++|.....+|..+ ..+++|++|++++|.... +|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHH
Confidence 666666666552 22333333 67888888888876665677765 778888888888865443 36555554
Q ss_pred -----CcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCc---ccC--CCcccccceecccchhhHH-HHhhcc
Q 048826 526 -----AKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSL---EED--GLPTNLHSLWIEDNMEIWK-SMIERG 594 (725)
Q Consensus 526 -----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~--~~~~~L~~L~l~~n~~~~~-~~~~~~ 594 (725)
++|++|++++|......+..+..+++|++|++++|...... +.. ..+++|++|++++|..... .+..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 221 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS-- 221 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH--
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH--
Confidence 78888998888866555577888888999999888543321 122 4568889999988865411 1111
Q ss_pred ccccccCCCcEEEeecCCCCCccCC-CCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCc
Q 048826 595 RGFHRFSSLRRLTIINCDDDMVSFP-PEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLR 673 (725)
Q Consensus 595 ~~~~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~ 673 (725)
..+..+++|++|++++| .+...+ ... +..+++|+.|++++| .++.+|..+. ++|+.|++++| +++
T Consensus 222 ~~~~~l~~L~~L~Ls~N--~l~~~~~~~~--------~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~ 287 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHN--SLRDAAGAPS--------CDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLD 287 (312)
T ss_dssp HHHHTTCCCSEEECTTS--CCCSSCCCSC--------CCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCC
T ss_pred HHHhcCCCCCEEECCCC--cCCcccchhh--------hhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCC
Confidence 33456789999999984 333322 221 125689999999994 5778887554 89999999985 677
Q ss_pred ccCCCCCcccccEEEecCCc
Q 048826 674 YFPEKGLPSSLLQLHIYRCP 693 (725)
Q Consensus 674 ~l~~~~~~~~L~~L~l~~c~ 693 (725)
.+|....+++|++|++++++
T Consensus 288 ~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 288 RNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCTTTSCEEEEEECTTCT
T ss_pred CChhHhhCCCCCEEeccCCC
Confidence 77765557889999988865
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.4e-15 Score=152.78 Aligned_cols=201 Identities=15% Similarity=0.096 Sum_probs=147.2
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+++++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46999999999887777778899999999999996544333446888999999999997765555667888999999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCC-Ccc-cCCCcccccceecccchhhHHHHhhccccccccCCCc----EEE
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELP-SLE-EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLR----RLT 607 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~----~L~ 607 (725)
++|......+..+..+++|++|++++|.... .++ ....+++|++|++++|.... +.. ..+..+++|+ .|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~~~--~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYC--TDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--ECG--GGGHHHHTCTTCCEEEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--CCH--HHhhhhhhccccceeee
Confidence 9998655445568899999999999985322 122 34456899999999986532 111 2345555555 788
Q ss_pred eecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCccccccccc-ccCCcCCCeEeccCCC
Q 048826 608 IINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSS-IVDLQNLTSLYLLDCP 670 (725)
Q Consensus 608 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~ 670 (725)
+++ +.+..++.... ...+|+.|++++| .++.++.. +..+++|+.|++++|+
T Consensus 184 ls~--n~l~~~~~~~~---------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 184 LSL--NPMNFIQPGAF---------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCS--SCCCEECTTSS---------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCC--CcccccCcccc---------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 887 44555555442 3358999999985 47777654 4678899999998865
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=4.2e-15 Score=145.63 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=131.2
Q ss_pred eEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCcc
Q 048826 34 QFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLE 111 (725)
Q Consensus 34 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~ 111 (725)
.+++.+.....+|. + -.+|++|++++| .++.+|+ ++.+++|++|++++|..++.++...++ .+++|+
T Consensus 15 ~~~v~c~~l~~ip~-~----~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~-----~l~~L~ 83 (239)
T 2xwt_C 15 DFRVTCKDIQRIPS-L----PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-----NLSKVT 83 (239)
T ss_dssp TTEEEECSCSSCCC-C----CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE-----SCTTCC
T ss_pred cceeEccCccccCC-C----CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC-----CCcCCc
Confidence 34445545666666 3 247888888887 6777765 778888888888888657777764332 267888
Q ss_pred eeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCccc---EEEec
Q 048826 112 TLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALC---KLKIY 188 (725)
Q Consensus 112 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~---~L~l~ 188 (725)
+|+++++++++... +..+..+++|++|++++| .++ .+|. +..+++|+ .|+++
T Consensus 84 ~L~l~~~n~l~~i~----~~~f~~l~~L~~L~l~~n-~l~-~lp~-------------------~~~l~~L~~L~~L~l~ 138 (239)
T 2xwt_C 84 HIEIRNTRNLTYID----PDALKELPLLKFLGIFNT-GLK-MFPD-------------------LTKVYSTDIFFILEIT 138 (239)
T ss_dssp EEEEEEETTCCEEC----TTSEECCTTCCEEEEEEE-CCC-SCCC-------------------CTTCCBCCSEEEEEEE
T ss_pred EEECCCCCCeeEcC----HHHhCCCCCCCEEeCCCC-CCc-cccc-------------------cccccccccccEEECC
Confidence 88887765666653 344567788888888777 444 3432 22233333 66666
Q ss_pred CC-CceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCc-EEEEccC
Q 048826 189 GC-KKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLK-RLTIDSC 266 (725)
Q Consensus 189 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~ 266 (725)
+| .... .+...+..+++|+ +|+++++
T Consensus 139 ~N~~l~~----------------------------------------------------i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 139 DNPYMTS----------------------------------------------------IPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp SCTTCCE----------------------------------------------------ECTTTTTTTBSSEEEEECCSC
T ss_pred CCcchhh----------------------------------------------------cCcccccchhcceeEEEcCCC
Confidence 66 3222 1122235566777 7777764
Q ss_pred CCcccchhhhhhHHHhhhhhccCCccEEEEeccc-CccccccccCCC-CCCcEEEeecCCCccccCCCCCCCCCceEEee
Q 048826 267 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCK-GLVKLPQSSLSL-SSLREIEIYKCSSLVSFPEVALPSKLKKIQFR 344 (725)
Q Consensus 267 ~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~l~ 344 (725)
.++.++...+. . ++|+.|++++|+ +....+..+..+ ++|+.|++++|. ++.++.. .+++|+.|++.
T Consensus 167 -~l~~i~~~~~~-----~----~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 167 -GFTSVQGYAFN-----G----TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp -CCCEECTTTTT-----T----CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT-TCTTCSEEECT
T ss_pred -CCcccCHhhcC-----C----CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh-HhccCceeecc
Confidence 45555543211 1 467777887775 433334456777 778888887764 4455443 56677777776
Q ss_pred ccC
Q 048826 345 ECD 347 (725)
Q Consensus 345 ~~~ 347 (725)
++.
T Consensus 235 ~~~ 237 (239)
T 2xwt_C 235 NTW 237 (239)
T ss_dssp TC-
T ss_pred Ccc
Confidence 654
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=6.2e-15 Score=153.28 Aligned_cols=221 Identities=19% Similarity=0.176 Sum_probs=165.7
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCcccc-CCCCcCcCcCcee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESF-PEGGLLCAKLTRL 531 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L 531 (725)
+++++|+|++|.+....+.+|..+++|++|++++|...+.+|. .+.++++++++...+++.+..+ |..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4699999999987765566789999999999999877776764 4677888887665555566665 5567888999999
Q ss_pred eeccccCccccccccCCCCCcceeecCCCCCCCCccc---CCCcccccceecccchhhHHHHhhccccccccCCCcEEEe
Q 048826 532 TILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE---DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTI 608 (725)
Q Consensus 532 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 608 (725)
++++|......+..+....++..+++.++..+..++. .+....++.|++++|.... + +.......+|++|++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i---~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--I---HNSAFNGTQLDELNL 184 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--E---CTTSSTTEEEEEEEC
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--C---ChhhccccchhHHhh
Confidence 9999985443334455666788888887766665543 3334678899999986531 1 123345568899999
Q ss_pred ecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCCcccccEEE
Q 048826 609 INCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGLPSSLLQLH 688 (725)
Q Consensus 609 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 688 (725)
.+ ++.+..+|... |..+++|+.|++++ +.++.+|. ..|.+|+.|.+.+|+.++.+|....+++|+.++
T Consensus 185 ~~-~n~l~~i~~~~--------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~ 252 (350)
T 4ay9_X 185 SD-NNNLEELPNDV--------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252 (350)
T ss_dssp TT-CTTCCCCCTTT--------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred cc-CCcccCCCHHH--------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence 87 36777888754 23678999999999 46888886 568899999999999999999866678899998
Q ss_pred ecC
Q 048826 689 IYR 691 (725)
Q Consensus 689 l~~ 691 (725)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 865
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=2.5e-15 Score=163.22 Aligned_cols=214 Identities=14% Similarity=0.093 Sum_probs=142.5
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++|+.|++++|.+.+..+..++.+++|++|++++|......| +..+++|++|++++|. +..++. .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEEC
Confidence 358888888887777777778888888888888865433333 7778888888888864 444442 268888888
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCcc-cCCCcccccceecccchhhHHHHhhccccc-cccCCCcEEEeecC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE-EDGLPTNLHSLWIEDNMEIWKSMIERGRGF-HRFSSLRRLTIINC 611 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~l~~L~~L~l~~~ 611 (725)
++|......+ ..+++|++|++++|......+ ..+.+++|++|++++|..... .+ ..+ ..+++|+.|++++|
T Consensus 107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~---~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NF---AELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-EG---GGGGGGTTTCCEEECTTS
T ss_pred cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-Ch---HHHhhhCCcccEEecCCC
Confidence 8887544333 245778888888874332222 233457888888888865321 11 223 36788888888874
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCC-CCcccccEEEec
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEK-GLPSSLLQLHIY 690 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~ 690 (725)
.+..++... .+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+|.. ..+++|+.|+++
T Consensus 180 --~l~~~~~~~----------~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 180 --FIYDVKGQV----------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp --CCCEEECCC----------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred --ccccccccc----------cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcC
Confidence 333444332 4678888888884 56777766777888888888885 45566654 235778888888
Q ss_pred CCchh
Q 048826 691 RCPLI 695 (725)
Q Consensus 691 ~c~~l 695 (725)
+++-.
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 76543
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1.5e-14 Score=150.27 Aligned_cols=104 Identities=16% Similarity=0.249 Sum_probs=82.5
Q ss_pred ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826 33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL 110 (725)
Q Consensus 33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 110 (725)
+.++.++++.+.+|..+ .+++++|+|++| .++.+|+ |+.+++|++|+|++|...+.++...+.. ++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~-----L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN-----LPKL 81 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS-----CTTC
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc-----chhh
Confidence 46777888888888765 468999999998 8999986 8999999999999998777787655332 6777
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcc
Q 048826 111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQ 151 (725)
Q Consensus 111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 151 (725)
+++...+.+++.... +..+..+++|++|+++++ .++
T Consensus 82 ~~~l~~~~N~l~~l~----~~~f~~l~~L~~L~l~~n-~l~ 117 (350)
T 4ay9_X 82 HEIRIEKANNLLYIN----PEAFQNLPNLQYLLISNT-GIK 117 (350)
T ss_dssp CEEEEEEETTCCEEC----TTSBCCCTTCCEEEEEEE-CCS
T ss_pred hhhhcccCCcccccC----chhhhhcccccccccccc-ccc
Confidence 776666666777764 455688999999999988 554
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=5.1e-15 Score=151.20 Aligned_cols=227 Identities=13% Similarity=0.070 Sum_probs=155.9
Q ss_pred CccEEEEecccchhhhhh---hhcCCCCccEEEecCCCCcccccccc--cCCCcccEEEeccCCCccccC----CCCcCc
Q 048826 455 SLKSLSVYGCSKLESIAE---RLDNNTSLEYINISNCENLKILPSGL--HNLRQLQEITIQRCGNLESFP----EGGLLC 525 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l 525 (725)
.++.+.+.++........ .+..+++|++|++++|......|..+ ..+++|++|++++|......+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 367777777765433211 12234679999999877666777766 788999999999877655433 223467
Q ss_pred CcCceeeeccccCccccccccCCCCCcceeecCCCCCCCC--c---ccCCCcccccceecccchhhHHHHhhcccccccc
Q 048826 526 AKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPS--L---EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRF 600 (725)
Q Consensus 526 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l 600 (725)
++|++|++++|......+..+..+++|++|++++|..... + .....+++|++|++++|........ ....+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcC
Confidence 8999999999987666667788899999999999854321 1 1124568999999999975321110 00124678
Q ss_pred CCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCC
Q 048826 601 SSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL 680 (725)
Q Consensus 601 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 680 (725)
++|++|++++| ......|..+.. +..+++|++|++++| .++.+|..+ +++|+.|++++| .++.+|....
T Consensus 224 ~~L~~L~Ls~N-~l~~~~p~~~~~------~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~~~~ 292 (310)
T 4glp_A 224 VQPHSLDLSHN-SLRATVNPSAPR------CMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQPDE 292 (310)
T ss_dssp CCCSSEECTTS-CCCCCCCSCCSS------CCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCCSCCCTTS
T ss_pred CCCCEEECCCC-CCCccchhhHHh------ccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCCCCchhhh
Confidence 99999999984 222333555432 112479999999994 577888754 489999999985 5667666556
Q ss_pred cccccEEEecCCc
Q 048826 681 PSSLLQLHIYRCP 693 (725)
Q Consensus 681 ~~~L~~L~l~~c~ 693 (725)
+++|+.|++++++
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 7889999998875
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=6.9e-16 Score=157.80 Aligned_cols=196 Identities=21% Similarity=0.203 Sum_probs=136.2
Q ss_pred CccEEEEecccchhhhhhhh--cCCCCccEEEecCCCCcccccccccCC-----CcccEEEeccCCCccccCCCCcCcCc
Q 048826 455 SLKSLSVYGCSKLESIAERL--DNNTSLEYINISNCENLKILPSGLHNL-----RQLQEITIQRCGNLESFPEGGLLCAK 527 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~ 527 (725)
+|++|++++|.+.+.+|..+ ..+++|++|++++|. +..+|..+..+ ++|++|++++|......+..+..+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 47888888877776666655 777888888888754 33346555555 78888888887655555567777888
Q ss_pred CceeeeccccCccc--ccccc--CCCCCcceeecCCCCCCCCccc-----CCCcccccceecccchhhHHHHhhcccccc
Q 048826 528 LTRLTILDCKRLEA--LPKGL--HNLTSLQQLTIGKGGELPSLEE-----DGLPTNLHSLWIEDNMEIWKSMIERGRGFH 598 (725)
Q Consensus 528 L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 598 (725)
|++|++++|...+. ++..+ ..+++|++|++++|. +..++. ...+++|++|++++|..... .+. ..+.
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~--~~~~ 250 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA-AGA--PSCD 250 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-CCC--SCCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc-cch--hhhh
Confidence 88888888875443 23333 777888888888884 332211 12347888888888864321 111 2345
Q ss_pred ccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826 599 RFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 599 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 670 (725)
.+++|+.|++++| .+..+|..+ +++|+.|++++| .++.+|. +..+++|+.|++++++
T Consensus 251 ~l~~L~~L~Ls~N--~l~~ip~~~-----------~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSFT--GLKQVPKGL-----------PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTTS--CCSSCCSSC-----------CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCCC--ccChhhhhc-----------cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 6789999999984 445777654 279999999994 6787776 7889999999999965
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=1.9e-14 Score=144.96 Aligned_cols=174 Identities=18% Similarity=0.139 Sum_probs=123.4
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++++.|++++|.+.+..+..+..+++|+.|++++| .++.++.. ..+++|++|++++| .+..+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence 45999999999888777888899999999999985 45556543 67899999999985 45678887888889999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
++|......+..+..+++|++|++++|. +..++. ...+++|+.|++++|+.. .++. ..+..+++|+.|++++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~--~~~~~l~~L~~L~L~~- 181 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT--ELPA--GLLNGLENLDTLLLQE- 181 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS--CCCT--TTTTTCTTCCEEECCS-
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC--ccCH--HHhcCcCCCCEEECCC-
Confidence 9988554444678888999999999884 333332 233467777777777543 1211 3355667777777766
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCc
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFP 646 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 646 (725)
+.+..+|..+. ..++|+.|++++|+
T Consensus 182 -N~l~~ip~~~~---------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 182 -NSLYTIPKGFF---------GSHLLPFAFLHGNP 206 (290)
T ss_dssp -SCCCCCCTTTT---------TTCCCSEEECCSCC
T ss_pred -CcCCccChhhc---------ccccCCeEEeCCCC
Confidence 44556665553 34567777777654
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=4.8e-14 Score=140.80 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccccc-ccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSG-LHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
+++++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|++|++++|......+..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 357888888877666555667777788888887743 4445443 46677777777777554333333456677777777
Q ss_pred eccccCccccccccCCCCCcceeecCCC
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKG 560 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 560 (725)
+++|......+..+..+++|++|++++|
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 7777654444445667777777777776
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=3.4e-16 Score=162.26 Aligned_cols=228 Identities=15% Similarity=0.128 Sum_probs=161.2
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccc-ccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKI-LPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++++.|++++|...+..+. +..+++|++|++++|..... ++..+..+++|++|++++|......+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3599999999877666554 56789999999999764433 677788899999999999876556666667789999999
Q ss_pred eccccCcc--ccccccCCCCCcceeecCCCCCCCC--cc-cCCCcc-cccceecccch-hhH-HHHhhccccccccCCCc
Q 048826 533 ILDCKRLE--ALPKGLHNLTSLQQLTIGKGGELPS--LE-EDGLPT-NLHSLWIEDNM-EIW-KSMIERGRGFHRFSSLR 604 (725)
Q Consensus 533 l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~--~~-~~~~~~-~L~~L~l~~n~-~~~-~~~~~~~~~~~~l~~L~ 604 (725)
+++|...+ .++..+..+++|++|++++|..+.. ++ ....++ +|++|++++|. .++ ..++ ..+..+++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~ 225 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLV 225 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCS
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCC
Confidence 99995444 3566678899999999999955553 11 133457 99999999995 232 2222 3466789999
Q ss_pred EEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc-cccccCCcCCCeEeccCCCCCcccCCCCC---
Q 048826 605 RLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL-SSSIVDLQNLTSLYLLDCPKLRYFPEKGL--- 680 (725)
Q Consensus 605 ~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--- 680 (725)
.|++++|.......+..++ .+++|+.|++++|..+... ...+..+++|+.|++++| +++.++
T Consensus 226 ~L~l~~~~~l~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l 291 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFF---------QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLL 291 (336)
T ss_dssp EEECTTCTTCCGGGGGGGG---------GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHH
T ss_pred EEeCCCCCcCCHHHHHHHh---------CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHH
Confidence 9999996422223333332 5689999999998633221 124567999999999998 444433
Q ss_pred cccccEEEecCCchhHHhhh
Q 048826 681 PSSLLQLHIYRCPLIEEKCR 700 (725)
Q Consensus 681 ~~~L~~L~l~~c~~l~~~~~ 700 (725)
...+..|+++ |.+++++..
T Consensus 292 ~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 292 KEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp HHHSTTSEES-CCCSCCTTC
T ss_pred HhhCcceEEe-cccCccccC
Confidence 2457777775 455665443
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=5.5e-16 Score=160.68 Aligned_cols=228 Identities=13% Similarity=0.174 Sum_probs=158.7
Q ss_pred CCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhh-hhhhhcCCCCccEEEecCCCCcccccc
Q 048826 418 SLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLES-IAERLDNNTSLEYINISNCENLKILPS 496 (725)
Q Consensus 418 ~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~l~~ 496 (725)
+.++.+++.+. .+....+ . ...+ ++|++|++++|.+.+. ++..+..+++|++|++++|......+.
T Consensus 70 ~~l~~L~l~~n-~l~~~~~-----~------~~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLA-----E------HFSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp TTCSEEECTTC-EECSCCC-----S------CCCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred ccceEEEcCCc-cccccch-----h------hccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 67888888763 2332111 1 1111 5799999999987766 788889999999999999875556677
Q ss_pred cccCCCcccEEEeccCCCcc--ccCCCCcCcCcCceeeeccccCccc--cccccCCCC-CcceeecCCCC-CCCC--cc-
Q 048826 497 GLHNLRQLQEITIQRCGNLE--SFPEGGLLCAKLTRLTILDCKRLEA--LPKGLHNLT-SLQQLTIGKGG-ELPS--LE- 567 (725)
Q Consensus 497 ~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~-~L~~L~l~~~~-~l~~--~~- 567 (725)
.+..+++|++|++++|..++ .++..+..+++|++|++++|..++. ++..+..++ +|++|++++|. .+.. ++
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 78889999999999986555 3566677889999999999933432 566678899 99999999995 3331 22
Q ss_pred cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcc
Q 048826 568 EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPN 647 (725)
Q Consensus 568 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 647 (725)
....+++|++|++++|..++.... ..+..+++|++|++++|... .+..+ ..+..+++|+.|++++|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~~---~~~~~------~~l~~~~~L~~L~l~~~-- 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCF---QEFFQLNYLQHLSLSRCYDI---IPETL------LELGEIPTLKTLQVFGI-- 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGG---GGGGGCTTCCEEECTTCTTC---CGGGG------GGGGGCTTCCEEECTTS--
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHH---HHHhCCCCCCEeeCCCCCCC---CHHHH------HHHhcCCCCCEEeccCc--
Confidence 223468999999999985432222 35778899999999996411 11111 01235799999999997
Q ss_pred cccccc-cccCC-cCCCeEeccCCCCCcccC
Q 048826 648 LERLSS-SIVDL-QNLTSLYLLDCPKLRYFP 676 (725)
Q Consensus 648 l~~i~~-~~~~~-~~L~~L~l~~c~~l~~l~ 676 (725)
++. .+..+ .+|+.|++++ +.++...
T Consensus 283 ---i~~~~~~~l~~~l~~L~l~~-n~l~~~~ 309 (336)
T 2ast_B 283 ---VPDGTLQLLKEALPHLQINC-SHFTTIA 309 (336)
T ss_dssp ---SCTTCHHHHHHHSTTSEESC-CCSCCTT
T ss_pred ---cCHHHHHHHHhhCcceEEec-ccCcccc
Confidence 332 22333 3477777866 4555543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=7.3e-15 Score=150.07 Aligned_cols=196 Identities=19% Similarity=0.149 Sum_probs=127.3
Q ss_pred CccEEEEecccchhhhhhhh--cCCCCccEEEecCCCCccccc----ccccCCCcccEEEeccCCCccccCCCCcCcCcC
Q 048826 455 SLKSLSVYGCSKLESIAERL--DNNTSLEYINISNCENLKILP----SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKL 528 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 528 (725)
+|++|++++|.+.+..+..+ ..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 47777777777666666665 667777777777755443322 223457777777777766655555666677777
Q ss_pred ceeeeccccCccc--cc--cccCCCCCcceeecCCCCCCCCccc-----CCCcccccceecccchhhHHHHhhccccccc
Q 048826 529 TRLTILDCKRLEA--LP--KGLHNLTSLQQLTIGKGGELPSLEE-----DGLPTNLHSLWIEDNMEIWKSMIERGRGFHR 599 (725)
Q Consensus 529 ~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 599 (725)
++|++++|+..+. ++ ..+..+++|++|++++|. +..++. ...+++|++|++++|.... .. +..+..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~---p~~~~~ 246 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA-TV---NPSAPR 246 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CC---CSCCSS
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc-cc---hhhHHh
Confidence 7777777764331 21 223567778888887773 333322 1234778888888776432 11 122333
Q ss_pred c---CCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826 600 F---SSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 600 l---~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 670 (725)
+ ++|++|++++ +.+..+|..+ +++|+.|++++| .++.+|. +..+++|+.|++++|+
T Consensus 247 ~~~~~~L~~L~Ls~--N~l~~lp~~~-----------~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 247 CMWSSALNSLNLSF--AGLEQVPKGL-----------PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCTTCCCEECCS--SCCCSCCSCC-----------CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ccCcCcCCEEECCC--CCCCchhhhh-----------cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 3 6899999988 4455677654 379999999994 5777665 5788999999999975
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=5.8e-14 Score=141.47 Aligned_cols=196 Identities=16% Similarity=0.151 Sum_probs=142.2
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+++++++++++... .+|..+ .++++.|++++|......+..+..+++|++|++++|. +..++.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEEC
Confidence 36899999887654 445443 3689999999966554446678889999999999865 4555543 67889999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
++|. ++.+|..+..+++|++|++++|. +..++. ...+++|++|++++|.... ++. ..+..+++|+.|++++
T Consensus 85 s~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~--~~~--~~~~~l~~L~~L~L~~- 157 (290)
T 1p9a_G 85 SHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT--LPP--GLLTPTPKLEKLSLAN- 157 (290)
T ss_dssp CSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC--CCT--TTTTTCTTCCEEECTT-
T ss_pred CCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc--cCh--hhcccccCCCEEECCC-
Confidence 9987 45788888889999999999984 343332 3445888888888886532 221 4466788888888887
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCC
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPK 671 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~ 671 (725)
+.+..+|.... ..+++|+.|++++ +.++.+|..+...++|+.|++++||-
T Consensus 158 -N~l~~l~~~~~--------~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 158 -NNLTELPAGLL--------NGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -SCCSCCCTTTT--------TTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -CcCCccCHHHh--------cCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 45556666542 2578888888888 45778887777778888888888653
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.3e-13 Score=137.60 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=125.1
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCC-CCcCcCcCceee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLT 532 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~ 532 (725)
+.+.++++++... .+|..+. ++++.|++++|. +..++ ..+..+++|++|++++|.. ..++. .+..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEE
Confidence 4778888887654 3454333 578888988854 44444 4677888889999888654 45554 346788888888
Q ss_pred eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
+++|......+..+..+++|++|++++|. +..++. ...+++|++|++++|.... ++. ..+..+++|++|++++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~--~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQS--LPK--GVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC--CCT--TTTTTCTTCCEEECCS
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCc--cCH--hHccCCcccceeEecC
Confidence 88887544334456788888888888874 333322 2345777778877775431 111 3356677777777776
Q ss_pred CCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCC
Q 048826 611 CDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 611 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~ 670 (725)
| .+..++... +..+++|+.|++++| .++.++. .+..+++|+.|++++||
T Consensus 167 n--~l~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 N--QLKRVPEGA--------FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp S--CCSCCCTTT--------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C--cCcEeChhH--------hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 3 344444432 124677777777774 4555554 34567777777777765
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=1.1e-14 Score=145.57 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=87.5
Q ss_pred cCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCCCC
Q 048826 25 MLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSS 104 (725)
Q Consensus 25 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~ 104 (725)
.+..+++|++|+++++....++. +.. +++|++|++++| .+..++.++.+++|++|++++|. ++.++...++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~-l~~--l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~---- 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQG-IQY--LPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQ-LQSLPNGVFD---- 106 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTT-GGG--CTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTT----
T ss_pred ccccccceeeeeeCCCCcccccc-ccc--CCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCccChhHhc----
Confidence 34455778888888877766553 332 788888888887 57777668888888888888876 6666654332
Q ss_pred CCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccE
Q 048826 105 TPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCK 184 (725)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~ 184 (725)
.+++|++|+++++ +++... +..+..+++|++|++++| .++ .+|. ..+..+++|+.
T Consensus 107 -~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~l~-~~~~-----------------~~~~~l~~L~~ 161 (272)
T 3rfs_A 107 -KLTNLKELVLVEN-QLQSLP----DGVFDKLTNLTYLNLAHN-QLQ-SLPK-----------------GVFDKLTNLTE 161 (272)
T ss_dssp -TCTTCCEEECTTS-CCCCCC----TTTTTTCTTCCEEECCSS-CCC-CCCT-----------------TTTTTCTTCCE
T ss_pred -CCcCCCEEECCCC-cCCccC----HHHhccCCCCCEEECCCC-ccC-ccCH-----------------HHhccCccCCE
Confidence 3677888888775 455442 333567778888888777 554 3332 22455566666
Q ss_pred EEecCCC
Q 048826 185 LKIYGCK 191 (725)
Q Consensus 185 L~l~~~~ 191 (725)
|++++|.
T Consensus 162 L~l~~n~ 168 (272)
T 3rfs_A 162 LDLSYNQ 168 (272)
T ss_dssp EECCSSC
T ss_pred EECCCCC
Confidence 6666664
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=2.7e-14 Score=143.28 Aligned_cols=199 Identities=16% Similarity=0.108 Sum_probs=147.5
Q ss_pred CCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826 478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI 557 (725)
Q Consensus 478 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 557 (725)
++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999996544333447889999999999997655444557888999999999999866655677899999999999
Q ss_pred CCCCCCCCcc-cCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCC
Q 048826 558 GKGGELPSLE-EDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPAS 636 (725)
Q Consensus 558 ~~~~~l~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 636 (725)
++|......+ ....+++|++|++++|...... .+..+..+++|++|++++| .+..++... +..+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------~~~l~~ 174 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSN--KIQSIYCTD--------LRVLHQ 174 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSS--CCCEECGGG--------GHHHHT
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCC--CCCcCCHHH--------hhhhhh
Confidence 9995332222 2455699999999999753211 1246888999999999994 344443321 113344
Q ss_pred Cc----EEEeccCcccccccccccCCcCCCeEeccCCCCCcccCCCCC--cccccEEEecC
Q 048826 637 LT----SLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQLHIYR 691 (725)
Q Consensus 637 L~----~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~ 691 (725)
|+ .|++++ +.+..++.......+|+.|++++| .++.++...+ +++|+.|++++
T Consensus 175 L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 175 MPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred ccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 54 899999 457778766566679999999996 4778776543 68999999994
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=4.1e-14 Score=144.08 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=147.5
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++|++|++++|.+.. ++ .+..+++|++|++++| .+..++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 469999999987655 33 5788999999999996 5556665 8889999999999976 55555 5778899999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDD 613 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 613 (725)
++|.. ..++. +..+++|++|++++|. +..++....+++|++|++++|.... + ..+..+++|+.|++++|
T Consensus 115 ~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~--~----~~l~~l~~L~~L~l~~n-- 183 (308)
T 1h6u_A 115 TSTQI-TDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSD--L----TPLANLSKLTTLKADDN-- 183 (308)
T ss_dssp TTSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCC--C----GGGTTCTTCCEEECCSS--
T ss_pred CCCCC-CCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCC--C----hhhcCCCCCCEEECCCC--
Confidence 99984 44553 8899999999999984 4445555667899999999996532 1 12778899999999984
Q ss_pred CCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCcccC
Q 048826 614 DMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLRYFP 676 (725)
Q Consensus 614 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 676 (725)
.+..++. + ..+++|+.|++++| .+..++. +..+++|+.|++++|+ +...+
T Consensus 184 ~l~~~~~-l---------~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 184 KISDISP-L---------ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CCCCCGG-G---------GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred ccCcChh-h---------cCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence 3344443 2 36789999999995 5666664 7889999999999864 44443
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=4e-14 Score=144.15 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=144.0
Q ss_pred cCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc
Q 048826 417 SSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS 496 (725)
Q Consensus 417 ~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 496 (725)
.++|++|++.++ .++. ++ .+.. + ++|+.|++++|.+.+..+ +..+++|++|++++|. +..++
T Consensus 40 l~~L~~L~l~~~-~i~~-l~--~~~~---------l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~- 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTT-IE--GVQY---------L-NNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS- 101 (308)
T ss_dssp HHTCCEEECTTS-CCCC-CT--TGGG---------C-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-
T ss_pred cCCcCEEEeeCC-CccC-ch--hhhc---------c-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-
Confidence 467999998875 3443 21 1111 1 469999999997766544 8899999999999965 55564
Q ss_pred cccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCccccc
Q 048826 497 GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLH 576 (725)
Q Consensus 497 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 576 (725)
.+..+++|++|++++|. +..++. +..+++|++|++++|.. ..++. +..+++|++|++++| .+..++....+++|+
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~ 176 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLT 176 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCC
T ss_pred hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCC
Confidence 57889999999999975 445553 77889999999999974 44444 788999999999998 445555566679999
Q ss_pred ceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc
Q 048826 577 SLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS 653 (725)
Q Consensus 577 ~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 653 (725)
+|++++|.... + ..+..+++|++|++++| .+..++. + ..+++|+.|++++| .+...|.
T Consensus 177 ~L~l~~n~l~~--~----~~l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 177 TLKADDNKISD--I----SPLASLPNLIEVHLKNN--QISDVSP-L---------ANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp EEECCSSCCCC--C----GGGGGCTTCCEEECTTS--CCCBCGG-G---------TTCTTCCEEEEEEE-EEECCCE
T ss_pred EEECCCCccCc--C----hhhcCCCCCCEEEccCC--ccCcccc-c---------cCCCCCCEEEccCC-eeecCCe
Confidence 99999996532 1 12778899999999984 3334442 2 36899999999995 4676664
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=6.3e-14 Score=140.08 Aligned_cols=124 Identities=19% Similarity=0.103 Sum_probs=85.2
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+|++|++++|.+.+..+..+..+++|++|++++|. ++.++ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 36677777766665555556777788888888764 44443 34567888888888886544433444567788888888
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchh
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNME 585 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~ 585 (725)
++|......+..+..+++|++|++++|+. .+.++.|+.|++..|..
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKH 234 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHHHHHHT
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCc------cccCcHHHHHHHHHHhC
Confidence 88876555555578888888888888842 23457788888877754
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=1.1e-14 Score=153.84 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=58.5
Q ss_pred CccEEEEecccchhh-----hhhhhcCCCCccEEEecCCCCc----ccccccccCCCcccEEEeccCCCccc----cCCC
Q 048826 455 SLKSLSVYGCSKLES-----IAERLDNNTSLEYINISNCENL----KILPSGLHNLRQLQEITIQRCGNLES----FPEG 521 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~----~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~ 521 (725)
+|++|++++|.+... .+..+..+++|+.|++++|... ..+|..+..+++|++|++++|..... ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 466666666655422 2225556666666666665432 34455556666666666666553322 2222
Q ss_pred C--cCcCcCceeeeccccCcc----cccccc-CCCCCcceeecCCCC
Q 048826 522 G--LLCAKLTRLTILDCKRLE----ALPKGL-HNLTSLQQLTIGKGG 561 (725)
Q Consensus 522 ~--~~l~~L~~L~l~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~ 561 (725)
+ ..+++|++|++++|.... .+|..+ .++++|++|++++|.
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2 225566666666666443 255544 445666666666663
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=7.7e-15 Score=155.03 Aligned_cols=208 Identities=14% Similarity=0.072 Sum_probs=114.5
Q ss_pred CCccEEEEecccc---hhhhh-------hhhcCCCCccEEEecCCCCcc----cccccccCCCcccEEEeccCCCccc--
Q 048826 454 PSLKSLSVYGCSK---LESIA-------ERLDNNTSLEYINISNCENLK----ILPSGLHNLRQLQEITIQRCGNLES-- 517 (725)
Q Consensus 454 ~~L~~L~L~~~~~---~~~~~-------~~~~~l~~L~~L~l~~~~~~~----~l~~~~~~l~~L~~L~l~~~~~~~~-- 517 (725)
++|++|++++|.. .+.+| ..+..+++|++|++++|.... .+|..+..+++|++|++++|.....
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 3577777777532 22222 233567777777777755433 2455666677777777777654321
Q ss_pred --cCCCCcCc---------CcCceeeeccccCc-cccc---cccCCCCCcceeecCCCCCCC------Ccc-cCCCcccc
Q 048826 518 --FPEGGLLC---------AKLTRLTILDCKRL-EALP---KGLHNLTSLQQLTIGKGGELP------SLE-EDGLPTNL 575 (725)
Q Consensus 518 --~~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~l~------~~~-~~~~~~~L 575 (725)
++..+..+ ++|++|++++|... ..++ ..+..+++|++|++++|. +. ..+ ....+++|
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCc
Confidence 22122222 67777777777643 2333 345566777777777773 22 112 23345677
Q ss_pred cceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCc---cCCCCCcccccCcccCCCCCCcEEEeccCccccc--
Q 048826 576 HSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMV---SFPPEPEDVRLGTTLPLPASLTSLWISNFPNLER-- 650 (725)
Q Consensus 576 ~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 650 (725)
++|++++|..........+..+..+++|++|++++|..... .++..+. ...+++|+.|++++|. +..
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-------~~~~~~L~~L~L~~n~-i~~~g 290 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS-------KLENIGLQTLRLQYNE-IELDA 290 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-------TCSSCCCCEEECCSSC-CBHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh-------hccCCCeEEEECcCCc-CCHHH
Confidence 77777777653222222223456677777777777422110 1122110 0125677777777754 443
Q ss_pred ---ccccc-cCCcCCCeEeccCCC
Q 048826 651 ---LSSSI-VDLQNLTSLYLLDCP 670 (725)
Q Consensus 651 ---i~~~~-~~~~~L~~L~l~~c~ 670 (725)
++..+ ..+++|+.|++++|+
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHhcCCCceEEEccCCc
Confidence 66555 446777777777754
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=1.9e-12 Score=127.64 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=82.1
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
.++++++++... .+|..+. ++++.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 455555554332 2332222 3555555555433333333455555555555555443333333344555555555555
Q ss_pred ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCC
Q 048826 536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDM 615 (725)
Q Consensus 536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 615 (725)
|......+..+..+++|++|++++|. +..++. ..+..+++|++|++++ +.+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~--------------------------~~~~~l~~L~~L~Ls~--N~l 143 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPS--------------------------GVFDRLTKLKELRLNT--NQL 143 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT--------------------------TTTTTCTTCCEEECCS--SCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCc-CCCcCh--------------------------hHhccCCcccEEECcC--CcC
Confidence 55333333344555555555555552 222221 2234455555555555 233
Q ss_pred ccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCC
Q 048826 616 VSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 616 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~ 670 (725)
..++... +..+++|+.|++++| .++.++. .+..+++|+.|++++|+
T Consensus 144 ~~~~~~~--------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 144 QSIPAGA--------FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCTTT--------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHHH--------cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 3344321 124556666666663 3444433 44556666666666644
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=8.6e-13 Score=130.09 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=97.4
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46999999999988888888999999999999996555544556788999999999997655444556778899999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccch
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNM 584 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~ 584 (725)
++|......+..+..+++|++|++++|. +..++. ...+++|++|++++|.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCc
Confidence 9997554344456889999999999983 443332 2233555555555553
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=9.2e-13 Score=124.54 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=97.9
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+|+.|++++|.+. .++ .+..+++|++|++++| .+..+ ..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4888888887665 344 5777888888888886 44444 356778888888888876655566777778888888888
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
+|......+..+..+++|++|++++|..+..++....+++|++|++++|.... + ..+..+++|+.|++++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~--~----~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--Y----RGIEDFPKLNQLYAFS 190 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC--C----TTGGGCSSCCEEEECB
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC--h----HHhccCCCCCEEEeeC
Confidence 88766556667778888888888888545555544445666666666664321 0 1244455555555554
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=5.4e-14 Score=146.95 Aligned_cols=244 Identities=12% Similarity=0.020 Sum_probs=130.2
Q ss_pred hhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCC-----CCCcEEEeecC
Q 048826 249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSL-----SSLREIEIYKC 323 (725)
Q Consensus 249 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~L~~~ 323 (725)
+.++...++|++|++++| .++..+.......+..+ +.+|++|+|++|.+....+..+..+ ++|++|++++|
T Consensus 15 ~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANT---PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTC---CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhC---CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 445555666999999986 47766654333334444 2289999999988765545544443 88888888887
Q ss_pred CCccccCC------CCCC-CCCceEEeeccCccccccccccc---CC-CCcccEEEeeccCCcccccccccccccceEEe
Q 048826 324 SSLVSFPE------VALP-SKLKKIQFRECDALKLLPEAWMS---DT-NSSLEILSIWVCHSLTYLAGVQLPRSLKRLVI 392 (725)
Q Consensus 324 ~~~~~~~~------~~~l-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 392 (725)
. ++..+. +..+ ++|++|++++|. ++..+..... .. ..+|++|++++|.
T Consensus 91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------------------- 149 (362)
T 3goz_A 91 F-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND------------------- 149 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-------------------
T ss_pred c-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-------------------
Confidence 6 333221 1112 567777777766 2222211100 00 1234444444331
Q ss_pred ecCCCccccccccccccCCCcccccCCCCeEEEeeCCCccccccCCCccccccccccCCCCCCccEEEEecccchhhhhh
Q 048826 393 LNCDNIRTLTMEEGIQSSSSRRYTSSLLEHLHIESCPSLTRIFSKNELPATLESLEVGNLPPSLKSLSVYGCSKLESIAE 472 (725)
Q Consensus 393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 472 (725)
+.+ .....++.. +...+++|++|++++|.+.+..+.
T Consensus 150 --------------------------------------l~~-~~~~~l~~~-----l~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 150 --------------------------------------LGI-KSSDELIQI-----LAAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp --------------------------------------GGG-SCHHHHHHH-----HHTSCTTCCEEECTTSCGGGSCHH
T ss_pred --------------------------------------CCH-HHHHHHHHH-----HhcCCccccEeeecCCCCchhhHH
Confidence 100 000000000 011112477777777766554433
Q ss_pred ----hhcCC-CCccEEEecCCCCcc----cccccccC-CCcccEEEeccCCCccc----cCCCCcCcCcCceeeeccccC
Q 048826 473 ----RLDNN-TSLEYINISNCENLK----ILPSGLHN-LRQLQEITIQRCGNLES----FPEGGLLCAKLTRLTILDCKR 538 (725)
Q Consensus 473 ----~~~~l-~~L~~L~l~~~~~~~----~l~~~~~~-l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~ 538 (725)
.+..+ ++|+.|++++|.... .++..+.. .++|++|++++|..... +...+..+++|++|++++|..
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 33344 477777777754322 13444444 34777777777643322 122345566788888877761
Q ss_pred -------ccccccccCCCCCcceeecCCCC
Q 048826 539 -------LEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 539 -------~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
...++..+..+++|+.|++++|.
T Consensus 266 ~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 266 KNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 12334456677777888887774
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=7.6e-14 Score=145.84 Aligned_cols=230 Identities=14% Similarity=0.044 Sum_probs=147.3
Q ss_pred CCCCccEEEEecccchhhhh----hhhcCCC-CccEEEecCCCCcccccccccCC-----CcccEEEeccCCCccccCCC
Q 048826 452 LPPSLKSLSVYGCSKLESIA----ERLDNNT-SLEYINISNCENLKILPSGLHNL-----RQLQEITIQRCGNLESFPEG 521 (725)
Q Consensus 452 ~~~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~ 521 (725)
.+++|++|++++|.+.+..+ ..+..++ +|++|++++|......+..+..+ ++|++|++++|......+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 34569999999998777655 6777888 89999999975444434444443 89999999998754433322
Q ss_pred ----CcCc-CcCceeeeccccCccccccc----cCC-CCCcceeecCCCCCCCC----ccc--CCCcccccceecccchh
Q 048826 522 ----GLLC-AKLTRLTILDCKRLEALPKG----LHN-LTSLQQLTIGKGGELPS----LEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 522 ----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~l~~----~~~--~~~~~~L~~L~l~~n~~ 585 (725)
+..+ ++|++|++++|......+.. +.. .++|++|++++|..-.. ++. ....++|++|++++|..
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 2333 79999999999854433322 334 36999999999843211 111 11224999999999976
Q ss_pred hHHHHhhcccccccc-CCCcEEEeecCCCCCcc-----CCCCCcccccCcccCCCCCCcEEEeccCccccccc-----cc
Q 048826 586 IWKSMIERGRGFHRF-SSLRRLTIINCDDDMVS-----FPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS-----SS 654 (725)
Q Consensus 586 ~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-----~~ 654 (725)
...........+..+ ++|++|++++|. +.. ++..+. ...++|++|++++| .+...+ ..
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~~~~l~~~l~--------~~~~~L~~L~Ls~N-~l~~~~~~~l~~~ 248 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANL--LGLKSYAELAYIFS--------SIPNHVVSLNLCLN-CLHGPSLENLKLL 248 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHH--------HSCTTCCEEECCSS-CCCCCCHHHHHHT
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCC--CChhHHHHHHHHHh--------cCCCCceEEECcCC-CCCcHHHHHHHHH
Confidence 432222211234455 599999999853 222 232221 12468999999996 455433 23
Q ss_pred ccCCcCCCeEeccCCCCCcccC--------CC-CCcccccEEEecCCc
Q 048826 655 IVDLQNLTSLYLLDCPKLRYFP--------EK-GLPSSLLQLHIYRCP 693 (725)
Q Consensus 655 ~~~~~~L~~L~l~~c~~l~~l~--------~~-~~~~~L~~L~l~~c~ 693 (725)
+..+++|+.|++++|. +..+. .. ...++|+.|++++++
T Consensus 249 ~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4667899999999874 12221 11 124678889888875
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=3.3e-12 Score=121.98 Aligned_cols=179 Identities=18% Similarity=0.237 Sum_probs=112.5
Q ss_pred ceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcccceeccccccCCCCCCCCCCc
Q 048826 33 KQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCL 110 (725)
Q Consensus 33 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L 110 (725)
+.++.++++...+|..+ .++|++|++++| .++.++. ++.+++|++|++++|. ++.++...++ .+++|
T Consensus 10 ~~v~c~~~~l~~~p~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-----~l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI----PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFN-----KLTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTT-----TCTTC
T ss_pred CEEEecCCCccCCCCCC----CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhhcC-----CCCCc
Confidence 35566666666766544 457888888887 6777765 6788888888888876 6666654322 26777
Q ss_pred ceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcccEEEecCC
Q 048826 111 ETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPALCKLKIYGC 190 (725)
Q Consensus 111 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 190 (725)
++|+++++ +++... ...+..+++|++|+++++ .++ .++. ..+..+++|+.|++++|
T Consensus 79 ~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~N-~l~-~~~~-----------------~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 79 TYLNLSTN-QLQSLP----NGVFDKLTQLKELALNTN-QLQ-SLPD-----------------GVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CEEECCSS-CCCCCC----TTTTTTCTTCCEEECCSS-CCC-CCCT-----------------TTTTTCTTCCEEECCSS
T ss_pred CEEECCCC-cCCccC----HhHhcCccCCCEEEcCCC-cCc-ccCH-----------------hHhccCCcCCEEECCCC
Confidence 77777764 444432 233466777777777766 443 2222 23456666777777766
Q ss_pred CceeEcccccccCCCCcccccCCCCcccccCCCCCCCCccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcc
Q 048826 191 KKVVWRSSTDHLGSQNSVVCGDTSNQVFLTGPLKPRLPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQ 270 (725)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 270 (725)
.... .+...+..+++|++|++++++...
T Consensus 135 ~l~~----------------------------------------------------~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 135 QLKS----------------------------------------------------VPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSC----------------------------------------------------CCTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccce----------------------------------------------------eCHHHhccCCCccEEEecCCCeec
Confidence 4221 112233566778888888764322
Q ss_pred cchhhhhhHHHhhhhhccCCccEEEEecccCccccccccCCCCC
Q 048826 271 SLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLVKLPQSSLSLSS 314 (725)
Q Consensus 271 ~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~ 314 (725)
. . ++|++|+++.|.+.+.+|..++.++.
T Consensus 163 ~------------~----~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 T------------C----PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp C------------T----TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred C------------C----CCHHHHHHHHHhCCceeeccCccccC
Confidence 1 1 67788888888887788877765544
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=2.1e-12 Score=130.18 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=57.8
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+|+.|++++|.+... + .+..+++|+.|++++| .+..++. +..+++|++|++++|. +..++. +..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECC
Confidence 366666666544332 2 3555566666666653 2333333 5555666666666543 233332 4455555555555
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccc
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDN 583 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n 583 (725)
+|... .+ ..+..+++|++|++++|. +..++....+++|++|++++|
T Consensus 121 ~n~i~-~~-~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 121 HNGIS-DI-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp TSCCC-CC-GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred CCcCC-CC-hhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC
Confidence 55422 22 234455555555555552 222232333344444444444
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=5.1e-12 Score=138.22 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=97.6
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+++.|++++|.+.+ +|..+ +++|+.|++++| .++.+| ..+++|++|++++|. +..+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 35666666655443 33333 255666666663 333555 335666666666643 333554 322 66666666
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCC
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD 614 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 614 (725)
+|.. +.+|. .+++|+.|++++|. +..++. .+++|++|++++|.... + +. +. ++|+.|++++ +.
T Consensus 129 ~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~--l---p~-l~--~~L~~L~Ls~--N~ 191 (571)
T 3cvr_A 129 NNQL-TMLPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTF--L---PE-LP--ESLEALDVST--NL 191 (571)
T ss_dssp SSCC-SCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSC--C---CC-CC--TTCCEEECCS--SC
T ss_pred CCcC-CCCCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCC--c---ch-hh--CCCCEEECcC--CC
Confidence 6653 23544 45666666666663 333333 34666666666664321 1 11 22 5667777766 33
Q ss_pred CccCCCCCcccccCcccCCCCCCcEEEeccCcccccccccccCCcCCCeEeccCCCCCc
Q 048826 615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPKLR 673 (725)
Q Consensus 615 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~l~ 673 (725)
+..+|. +.. ......+.|+.|++++ +.++.+|..+..+++|+.|++++|+...
T Consensus 192 L~~lp~-~~~----~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 192 LESLPA-VPV----RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CSSCCC-CC------------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCchhh-HHH----hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 445554 310 0001112237777777 4566777766667777777777765433
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=6e-12 Score=118.90 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=89.3
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++|++|++++|.... + ..+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 66 ~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 66 HNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 358888888774332 2 35677788888888876555556667777888888888887665555666667778888888
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchh
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNME 585 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~ 585 (725)
++|...+.++ .+..+++|++|++++|. +..++....+++|++|++++|+.
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC--
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCccc
Confidence 8887555665 57778888888888873 44444455568888888888864
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=9.6e-12 Score=125.29 Aligned_cols=169 Identities=18% Similarity=0.261 Sum_probs=132.7
Q ss_pred cCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcce
Q 048826 475 DNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQ 554 (725)
Q Consensus 475 ~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 554 (725)
..+++|+.|++++| .+..++ .+..+++|++|++++|.. ..++. +..+++|++|++++|.. ..++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCE
Confidence 45778999999995 555664 478899999999999754 44554 77889999999999984 4454 4889999999
Q ss_pred eecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCC
Q 048826 555 LTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLP 634 (725)
Q Consensus 555 L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 634 (725)
|++++| .+..++....+++|++|++++|.... + ..+..+++|+.|++++| .+..++. + ..+
T Consensus 117 L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~--~----~~l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l 177 (291)
T 1h6t_A 117 LSLEHN-GISDINGLVHLPQLESLYLGNNKITD--I----TVLSRLTKLDTLSLEDN--QISDIVP-L---------AGL 177 (291)
T ss_dssp EECTTS-CCCCCGGGGGCTTCCEEECCSSCCCC--C----GGGGGCTTCSEEECCSS--CCCCCGG-G---------TTC
T ss_pred EECCCC-cCCCChhhcCCCCCCEEEccCCcCCc--c----hhhccCCCCCEEEccCC--ccccchh-h---------cCC
Confidence 999999 45555666677999999999996542 1 34778999999999984 3344433 2 368
Q ss_pred CCCcEEEeccCcccccccccccCCcCCCeEeccCCC
Q 048826 635 ASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCP 670 (725)
Q Consensus 635 ~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 670 (725)
++|+.|++++| .++.++. +..+++|+.|++++|+
T Consensus 178 ~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 178 TKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred CccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 99999999995 6777765 7889999999999964
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=8.9e-12 Score=118.93 Aligned_cols=128 Identities=19% Similarity=0.148 Sum_probs=80.4
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
+++++|++++|.+.+..+..+..+++|++|++++|. ++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 358888888887776656667778888888888854 444543 356778888888887654333333456777888888
Q ss_pred eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccc
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDN 583 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n 583 (725)
+++|......+..+..+++|++|++++|. +..++. ...+++|++|++++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 88776443333346777777777777773 332222 122344555555444
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=5.1e-11 Score=130.34 Aligned_cols=176 Identities=24% Similarity=0.279 Sum_probs=136.1
Q ss_pred CCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeec
Q 048826 478 TSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTI 557 (725)
Q Consensus 478 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 557 (725)
.+|+.|++++|. ++.+|..+ +++|++|++++|. +..+| ..+++|++|++++|... .+|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEEC
Confidence 389999999964 66688766 4899999999965 55788 44789999999999744 4777 654 9999999
Q ss_pred CCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCC
Q 048826 558 GKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASL 637 (725)
Q Consensus 558 ~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L 637 (725)
++|. +..++. .+++|+.|++++|.... + +. .+++|+.|++++| .+..+|. + . ++|
T Consensus 128 s~N~-l~~lp~--~l~~L~~L~Ls~N~l~~--l---p~---~l~~L~~L~Ls~N--~L~~lp~-l----------~-~~L 182 (571)
T 3cvr_A 128 DNNQ-LTMLPE--LPALLEYINADNNQLTM--L---PE---LPTSLEVLSVRNN--QLTFLPE-L----------P-ESL 182 (571)
T ss_dssp CSSC-CSCCCC--CCTTCCEEECCSSCCSC--C---CC---CCTTCCEEECCSS--CCSCCCC-C----------C-TTC
T ss_pred CCCc-CCCCCC--cCccccEEeCCCCccCc--C---CC---cCCCcCEEECCCC--CCCCcch-h----------h-CCC
Confidence 9994 555665 67999999999997532 1 11 5789999999994 4555776 4 2 899
Q ss_pred cEEEeccCcccccccccccCCcCC-------CeEeccCCCCCcccCCC-CCcccccEEEecCCch
Q 048826 638 TSLWISNFPNLERLSSSIVDLQNL-------TSLYLLDCPKLRYFPEK-GLPSSLLQLHIYRCPL 694 (725)
Q Consensus 638 ~~L~l~~~~~l~~i~~~~~~~~~L-------~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~ 694 (725)
+.|++++| .++.+|. +.. +| +.|++++| .++.+|.. ..+++|+.|++++++-
T Consensus 183 ~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 183 EALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 99999995 6888887 443 77 99999995 67788874 2378999999999863
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=1.3e-11 Score=136.65 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=97.9
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+|+.|++++|.+... + .+..+++|+.|++++|. +..++. +..+++|+.|++++|. +..++ .+..+++|+.|+++
T Consensus 44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEec
Confidence 477777777765432 2 46677777777777753 444443 6677777777777754 34444 45667777777777
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCC
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDD 614 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 614 (725)
+|... .+ ..+..+++|+.|++++|. +..++....+++|+.|+|++|.... . ..+..+++|+.|++++| .
T Consensus 118 ~N~l~-~l-~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~--~----~~l~~l~~L~~L~Ls~N--~ 186 (605)
T 1m9s_A 118 HNGIS-DI-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISD--I----VPLAGLTKLQNLYLSKN--H 186 (605)
T ss_dssp TSCCC-CC-GGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCC--C----GGGTTCTTCCEEECCSS--C
T ss_pred CCCCC-CC-ccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCC--c----hhhccCCCCCEEECcCC--C
Confidence 77633 33 346677777777777773 3333444455677777777664321 1 11555666666666663 2
Q ss_pred CccCCCCCcccccCcccCCCCCCcEEEeccCc
Q 048826 615 MVSFPPEPEDVRLGTTLPLPASLTSLWISNFP 646 (725)
Q Consensus 615 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 646 (725)
+..++. + ..+++|+.|++++|+
T Consensus 187 i~~l~~-l---------~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 187 ISDLRA-L---------AGLKNLDVLELFSQE 208 (605)
T ss_dssp CCBCGG-G---------TTCTTCSEEECCSEE
T ss_pred CCCChH-H---------ccCCCCCEEEccCCc
Confidence 222221 1 245666666666643
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=3.7e-11 Score=115.50 Aligned_cols=130 Identities=13% Similarity=0.134 Sum_probs=99.9
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCC-CcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG-GLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~ 532 (725)
++++.|++++|.+.+..+..+..+++|+.|++++|......|..+.++++|++|++++|. +..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEE
Confidence 459999999998877767788889999999999966555557788889999999999865 4455544 56788999999
Q ss_pred eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~ 585 (725)
+++|......+..+..+++|++|++++|. +..++. ...+++|++|++++|+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99998666667778889999999999984 333332 33457788888888753
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.20 E-value=7e-12 Score=124.17 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=111.7
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
+..++++++...+.. .+..+++|+.|++++| .+..++ .+..+++|++|++++|. +..++. +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence 666777776554432 4667788888988885 556666 57778888888888864 445554 67788888888888
Q ss_pred ccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCC
Q 048826 536 CKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDM 615 (725)
Q Consensus 536 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 615 (725)
|.. +.++... . ++|++|++++| .+..++....+++|++|++++|.... + ..+..+++|+.|++++| .+
T Consensus 95 N~l-~~l~~~~-~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~--~----~~l~~l~~L~~L~L~~N--~i 162 (263)
T 1xeu_A 95 NRL-KNLNGIP-S-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKS--I----VMLGFLSKLEVLDLHGN--EI 162 (263)
T ss_dssp SCC-SCCTTCC-C-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCCB--C----GGGGGCTTCCEEECTTS--CC
T ss_pred Ccc-CCcCccc-c-CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCCC--C----hHHccCCCCCEEECCCC--cC
Confidence 873 4454422 2 78888888888 44445555566888888888886432 1 23667778888888774 22
Q ss_pred ccCCCCCcccccCcccCCCCCCcEEEeccCccccccc
Q 048826 616 VSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLS 652 (725)
Q Consensus 616 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 652 (725)
..+ ..+ ..+++|+.|++++|+ +...|
T Consensus 163 ~~~-~~l---------~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 163 TNT-GGL---------TRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp CBC-TTS---------TTCCCCCEEEEEEEE-EECCC
T ss_pred cch-HHh---------ccCCCCCEEeCCCCc-ccCCc
Confidence 222 222 256778888887743 44444
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=7.1e-11 Score=114.33 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=101.6
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++|+.|++++|.+.+..+..+..+++|+.|++++|. +..+|. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 469999999999888878889999999999999965 566654 467899999999999754433344467889999999
Q ss_pred eccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~ 585 (725)
+++|. +..+|..+..+++|++|++++| .+..++. ...+++|++|++++|+.
T Consensus 119 Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 119 MCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99998 4578888899999999999998 4444432 34457888888888864
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=4.2e-11 Score=132.54 Aligned_cols=171 Identities=19% Similarity=0.264 Sum_probs=134.3
Q ss_pred hcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcc
Q 048826 474 LDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQ 553 (725)
Q Consensus 474 ~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 553 (725)
+..+++|+.|++++|. +..++ .+..+++|+.|++++|.. ..++. +..+++|+.|++++|.. ..++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCC
Confidence 4467889999999854 56665 578899999999999754 44443 77899999999999974 4454 689999999
Q ss_pred eeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCC
Q 048826 554 QLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPL 633 (725)
Q Consensus 554 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~ 633 (725)
.|++++|. +..++....+++|+.|+|++|.... + ..+..+++|+.|++++| .+..+++ + ..
T Consensus 113 ~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~--l----~~l~~l~~L~~L~Ls~N--~l~~~~~-l---------~~ 173 (605)
T 1m9s_A 113 SLSLEHNG-ISDINGLVHLPQLESLYLGNNKITD--I----TVLSRLTKLDTLSLEDN--QISDIVP-L---------AG 173 (605)
T ss_dssp EEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCC--C----GGGGSCTTCSEEECCSS--CCCCCGG-G---------TT
T ss_pred EEEecCCC-CCCCccccCCCccCEEECCCCccCC--c----hhhcccCCCCEEECcCC--cCCCchh-h---------cc
Confidence 99999994 4555666677999999999997542 1 35778999999999985 3333333 2 36
Q ss_pred CCCCcEEEeccCcccccccccccCCcCCCeEeccCCCC
Q 048826 634 PASLTSLWISNFPNLERLSSSIVDLQNLTSLYLLDCPK 671 (725)
Q Consensus 634 ~~~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~ 671 (725)
+++|+.|+|++| .+..++ .+..+++|+.|++++|+.
T Consensus 174 l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 174 LTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence 899999999995 577775 478899999999999753
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=2.6e-10 Score=110.33 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=40.3
Q ss_pred ccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccc-cccCCCCCcceeecC
Q 048826 480 LEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALP-KGLHNLTSLQQLTIG 558 (725)
Q Consensus 480 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~ 558 (725)
.+.++.++ ..++.+|..+. ++|++|++++|......+..+..+++|++|++++|.. ..++ ..+..+++|++|+++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECC
Confidence 34445544 34455554332 5566666666544444444555556666666666653 3333 334556666666666
Q ss_pred CC
Q 048826 559 KG 560 (725)
Q Consensus 559 ~~ 560 (725)
+|
T Consensus 97 ~N 98 (229)
T 3e6j_A 97 TN 98 (229)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=3e-10 Score=109.04 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=70.0
Q ss_pred EEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCC
Q 048826 482 YINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 482 ~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
.++.++ ..++.+|..+. ++|+.|++++|......+..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 444444 34445554432 456666666644333233345556666666666666444445566666666666666662
Q ss_pred CCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcE
Q 048826 562 ELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTS 639 (725)
Q Consensus 562 ~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 639 (725)
+..++. ...+++|++|++++|.... + .+..+..+++|+.|++++ +.+..++... +..+++|+.
T Consensus 92 -l~~l~~~~f~~l~~L~~L~L~~N~l~~--~--~~~~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~~L~~ 156 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLLLLNANKINC--L--RVDAFQDLHNLNLLSLYD--NKLQTIAKGT--------FSPLRAIQT 156 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCC--C--CTTTTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCTTCCE
T ss_pred -CCccCHhHccCCCCCCEEECCCCCCCE--e--CHHHcCCCCCCCEEECCC--CcCCEECHHH--------HhCCCCCCE
Confidence 222222 1223444444444443211 0 012344555666666655 2333333321 113455555
Q ss_pred EEeccC
Q 048826 640 LWISNF 645 (725)
Q Consensus 640 L~l~~~ 645 (725)
|++++|
T Consensus 157 L~L~~N 162 (220)
T 2v9t_B 157 MHLAQN 162 (220)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 555553
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=2.5e-11 Score=111.37 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=75.9
Q ss_pred CCCccEEEecCCCCc-ccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCccee
Q 048826 477 NTSLEYINISNCENL-KILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQL 555 (725)
Q Consensus 477 l~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 555 (725)
.++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345666666554432 2455555556666666666654 3333 445556666666666666444355545556666666
Q ss_pred ecCCCCCCCCc---ccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecCCCCCccCCC
Q 048826 556 TIGKGGELPSL---EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINCDDDMVSFPP 620 (725)
Q Consensus 556 ~l~~~~~l~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~ 620 (725)
++++|. +..+ .....+++|++|++++|+..... ......+..+++|+.|++++| ....+|.
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~~n--~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN-DYRESVFKLLPQLTYLDGYDR--EDQEAPD 164 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST-THHHHHHTTCSSCCEETTEET--TSCBCCS
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH-HHHHHHHHhCccCcEecCCCC--Chhhccc
Confidence 666663 3322 23344566777777776543211 000024667888888888884 3444443
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=5.5e-11 Score=123.92 Aligned_cols=129 Identities=12% Similarity=-0.006 Sum_probs=65.9
Q ss_pred CccEEEEecccchhhhhhhhc-CCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAERLD-NNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
.++.|+|++|.+.+..+..+. .+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 356666666655554444444 5666666666654322222334555666666666664432222334455566666666
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCcccC-----CCcccccceecccch
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEED-----GLPTNLHSLWIEDNM 584 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-----~~~~~L~~L~l~~n~ 584 (725)
++|......+..+..+++|++|++++|. +..++.. ..+++|+.|++++|.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 6665444334555566666666666652 2222221 224555555555554
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.16 E-value=1.4e-10 Score=111.41 Aligned_cols=129 Identities=14% Similarity=0.012 Sum_probs=81.1
Q ss_pred CccEEEEecccchhhhh-hhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIA-ERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
.+++|++++|.+.+..+ ..+..+++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 46777777776665533 34667777777777775433323335677777777777776554444444666777777777
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCc-c-cCCCcccccceecccch
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSL-E-EDGLPTNLHSLWIEDNM 584 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~L~~L~l~~n~ 584 (725)
++|......|..+..+++|++|++++|. +..+ + ....+++|++|++++|+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 7777555556667777777777777773 3322 1 13334666666666664
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.14 E-value=4.1e-11 Score=118.61 Aligned_cols=140 Identities=20% Similarity=0.259 Sum_probs=74.3
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+|+.|++++|.+.. ++ .+..+++|+.|++++| .+..++. +..+++|++|++++|. ++.++.... ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECC
T ss_pred cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEcc
Confidence 46666666664433 22 4555666666666663 3444443 5566666666666643 333443222 566666666
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
+|.. +.++ .+..+++|+.|++++|. +..++....+++|++|++++|..... ..+..+++|+.|++++
T Consensus 115 ~N~l-~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 115 NNEL-RDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SSCC-SBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEE
T ss_pred CCcc-CCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCC
Confidence 6653 2332 35566666666666662 33334444456666666666643211 2345566666666665
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=1.7e-10 Score=120.21 Aligned_cols=101 Identities=14% Similarity=0.043 Sum_probs=55.0
Q ss_pred cEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-cccc-CCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLH-NLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
+.++++++... .+|..+ .+.++.|++++|. ++.++ ..+. .+++|++|++++|......+..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 45666665333 334332 2346677776643 33333 2333 56677777776654333333456666667777776
Q ss_pred cccCccccccccCCCCCcceeecCCCC
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
+|......+..+..+++|++|++++|.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence 666433333345666666666666663
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=3.5e-10 Score=108.66 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=93.1
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|......|..+..+++|++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 46999999999888877778999999999999996654444556889999999999998766666788889999999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
++|......|..+..+++|++|++++|+
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9998766668889999999999999995
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=5.4e-10 Score=102.38 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=82.9
Q ss_pred CCccEEEEecccch-hhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKL-ESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++|++|++++|.+. +.++..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45777777777665 4556666777777777777754 4444 5566777777777777655444555555577777777
Q ss_pred eccccCccccc--cccCCCCCcceeecCCCCCCCCcc----cCCCcccccceecccchh
Q 048826 533 ILDCKRLEALP--KGLHNLTSLQQLTIGKGGELPSLE----EDGLPTNLHSLWIEDNME 585 (725)
Q Consensus 533 l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L~~L~l~~n~~ 585 (725)
+++|.. +.++ ..+..+++|++|++++|......+ ....+++|++|++++|..
T Consensus 102 Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777763 3433 566777777777777773222111 233457777777777743
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.08 E-value=5.2e-11 Score=106.77 Aligned_cols=128 Identities=18% Similarity=0.114 Sum_probs=58.1
Q ss_pred CCccEEEecCCCCc-ccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceee
Q 048826 478 TSLEYINISNCENL-KILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLT 556 (725)
Q Consensus 478 ~~L~~L~l~~~~~~-~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 556 (725)
++|+.|++++|... ..+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444443322 2344444444555555555432 2222 3344445555555555543333444444455555555
Q ss_pred cCCCCCCCCc---ccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEee
Q 048826 557 IGKGGELPSL---EEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTII 609 (725)
Q Consensus 557 l~~~~~l~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~ 609 (725)
+++|. +..+ .....+++|++|++++|+..... ......+..+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLN-DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGST-THHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchH-HHHHHHHHHCCCcccccCC
Confidence 55553 2221 22333455666666655432110 0000235667777777765
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=2.9e-12 Score=140.93 Aligned_cols=197 Identities=14% Similarity=0.078 Sum_probs=118.5
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCC-------------CcccccccccCCCcccEEE-eccCCCccccC
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCE-------------NLKILPSGLHNLRQLQEIT-IQRCGNLESFP 519 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~l~~~~~~l~~L~~L~-l~~~~~~~~~~ 519 (725)
++|+.|++++|.. +.+|..++.+++|+.|++++|. .....|..+..+++|+.|+ ++.+ .+
T Consensus 349 ~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~---- 422 (567)
T 1dce_A 349 EQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL---- 422 (567)
T ss_dssp TTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH----
T ss_pred ccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc----
Confidence 4688899998754 5778888888899999886643 2223344455556666665 3321 11
Q ss_pred CCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccchhhHHHHhhccccccc
Q 048826 520 EGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHR 599 (725)
Q Consensus 520 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 599 (725)
.+|+.+.+.+|. +..++. ..|+.|++++| .+..++..+.+++|+.|++++|... ..|..+..
T Consensus 423 ------~~L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~ 484 (567)
T 1dce_A 423 ------DDLRSKFLLENS-VLKMEY-----ADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLR-----ALPPALAA 484 (567)
T ss_dssp ------HHHHHHHHHHHH-HHHHHH-----TTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCC-----CCCGGGGG
T ss_pred ------chhhhhhhhccc-ccccCc-----cCceEEEecCC-CCCCCcCccccccCcEeecCccccc-----ccchhhhc
Confidence 122333333332 112221 23666666666 3344444445566666666666443 12245677
Q ss_pred cCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccc--cccccCCcCCCeEeccCCCCCcccCC
Q 048826 600 FSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERL--SSSIVDLQNLTSLYLLDCPKLRYFPE 677 (725)
Q Consensus 600 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i--~~~~~~~~~L~~L~l~~c~~l~~l~~ 677 (725)
+++|+.|++++ +.+..+| .+ ..+++|+.|++++| .++.+ |..+..+++|+.|++++|+ ++.+++
T Consensus 485 l~~L~~L~Ls~--N~l~~lp-~l---------~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASD--NALENVD-GV---------ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp CTTCCEEECCS--SCCCCCG-GG---------TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred CCCCCEEECCC--CCCCCCc-cc---------CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 78888888887 3444455 33 26788888888884 46665 7777888888888888854 555554
Q ss_pred CCC-----cccccEEE
Q 048826 678 KGL-----PSSLLQLH 688 (725)
Q Consensus 678 ~~~-----~~~L~~L~ 688 (725)
... +|+|+.|+
T Consensus 551 ~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 551 IQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTHHHHHCTTCSEEE
T ss_pred HHHHHHHHCcccCccC
Confidence 321 46777765
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=2.9e-10 Score=101.82 Aligned_cols=126 Identities=19% Similarity=0.202 Sum_probs=88.1
Q ss_pred CCccEEEEecccch-hhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKL-ESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++++.|++++|.+. +.++..+..+++|+.|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46888888888776 466777778888888888885 44444 5677788888888888765555666566678888888
Q ss_pred eccccCccc-cccccCCCCCcceeecCCCCCCCCccc-----CCCcccccceeccc
Q 048826 533 ILDCKRLEA-LPKGLHNLTSLQQLTIGKGGELPSLEE-----DGLPTNLHSLWIED 582 (725)
Q Consensus 533 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~ 582 (725)
+++|..... .+..+..+++|++|++++|. +...+. ...+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 888874331 23667888888888888883 333222 33457788877753
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=1.8e-09 Score=110.79 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=41.2
Q ss_pred cCCCcEEEeecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCC-eEeccCCCCCcccCC
Q 048826 600 FSSLRRLTIINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLT-SLYLLDCPKLRYFPE 677 (725)
Q Consensus 600 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~-~L~l~~c~~l~~l~~ 677 (725)
+++|+.|++++ +.+..++... |..+++|++|++.++ ++.|+. .|..+++|+ .+++.+ .++.+++
T Consensus 225 ~~~L~~l~L~~--n~i~~I~~~a--------F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISK--TNATTIPDFT--------FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTT--BCCCEECTTT--------TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCC--CCcceecHhh--------hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch
Confidence 55666666665 2344444433 235566666666652 555543 345566666 666654 4555555
Q ss_pred CCC--cccccEEEec
Q 048826 678 KGL--PSSLLQLHIY 690 (725)
Q Consensus 678 ~~~--~~~L~~L~l~ 690 (725)
..+ .++|+.+++.
T Consensus 291 ~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 291 GAFMGCDNLRYVLAT 305 (329)
T ss_dssp TTTTTCTTEEEEEEC
T ss_pred hhhhCCccCCEEEeC
Confidence 444 3456666553
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=8.7e-12 Score=137.19 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=78.1
Q ss_pred CCccEEEEeccc-------------chhhhhhhhcCCCCccEEE-ecCCCCcccccc------cccC--CCcccEEEecc
Q 048826 454 PSLKSLSVYGCS-------------KLESIAERLDNNTSLEYIN-ISNCENLKILPS------GLHN--LRQLQEITIQR 511 (725)
Q Consensus 454 ~~L~~L~L~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~l~~------~~~~--l~~L~~L~l~~ 511 (725)
++|+.|++++|. ..+..|..++.+++|+.|+ ++. +.+..++. .+.. ...|+.|++++
T Consensus 372 ~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~ 450 (567)
T 1dce_A 372 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450 (567)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTT
T ss_pred HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccchhhhhhhhcccccccCccCceEEEecC
Confidence 468888887664 4556677788888899888 444 22222211 0111 12577888887
Q ss_pred CCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCCcccccceecccc
Q 048826 512 CGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDN 583 (725)
Q Consensus 512 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n 583 (725)
| .++.+|. +..+++|+.|++++|.. +.+|..+..+++|+.|++++|. +..++..+.+++|++|++++|
T Consensus 451 n-~l~~lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 451 K-DLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp S-CCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred C-CCCCCcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCC
Confidence 5 4455775 77778888888888874 4777778888888888888873 333443333444445544444
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.9e-09 Score=109.35 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=63.0
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCC-CCcCcCcCc-ee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLT-RL 531 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~-~L 531 (725)
++..+.+.+.-...........+++|+.+++++|. ++.+|. .+.++++|+++++.++ +..++. .+..|++|+ .+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 35555555542222222222236677777776633 444443 3556677777777664 444443 455666676 77
Q ss_pred eeccccCcccc-ccccCCCCCcceeecCCCCCCCCccc--CCCccccccee
Q 048826 532 TILDCKRLEAL-PKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLW 579 (725)
Q Consensus 532 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~ 579 (725)
++.+ . ++.+ +..|..|++|+.++++++ .+..++. ...+++|+.+.
T Consensus 280 ~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPA-S-VTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-T-CCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EEcc-c-ceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 7766 2 3333 345666777777777655 2333322 22245666554
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.98 E-value=1.7e-09 Score=101.36 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=85.0
Q ss_pred CccEEEEecccchhhhhh-hhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAE-RLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
++++|++++|.+.+..+. .++.+++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 588999999877665543 4788899999999986555555777888899999999987665555556778889999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
++|......|..+..+++|++|++++|+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9998766667788888899999998884
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=1.4e-09 Score=100.49 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=101.6
Q ss_pred cccCCCCCCcceEEEeccCCCCCCCCcCCCCCCCccEEEEecCCCCCcCCCCCCCCccceeeecCcccceeccccccCCC
Q 048826 23 LDMLKPHKNLKQFCISGYGGTKFPTWLGDSSFSNLVILKFEDCGMCTTWPSVGQLPSLKHLAVSGMSKVKRLGSEFYGND 102 (725)
Q Consensus 23 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~ 102 (725)
...+..+.+|++|+++++....+|.... ..++|++|++++| .++.++.++.+++|++|++++|. +..+++.+++
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~--~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~-- 85 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGA--TLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQ-- 85 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGG--GTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHH--
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhh--cCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcchhh--
Confidence 3456778999999999999888865332 2459999999998 78888779999999999999997 7888765432
Q ss_pred CCCCCCCcceeeecccccccccccCCCCCCCCCCCCccEEEeccCcCcccccCCCCCcceeeeeccChhhhhhccCCCcc
Q 048826 103 SSTPFPCLETLRFEDMEEWEDWIPHGSSQGVEGFPKLRELHVIRCSKLQGTFPEHLPALEMLAIEKCEELLASITCLPAL 182 (725)
Q Consensus 103 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L 182 (725)
.+++|++|+++++ .+..+.. ...+..+++|++|++++| .++ .+|.. ....+..+++|
T Consensus 86 ---~l~~L~~L~L~~N-~i~~~~~---~~~l~~l~~L~~L~l~~N-~i~-~~~~~--------------~~~~~~~l~~L 142 (176)
T 1a9n_A 86 ---ALPDLTELILTNN-SLVELGD---LDPLASLKSLTYLCILRN-PVT-NKKHY--------------RLYVIYKVPQV 142 (176)
T ss_dssp ---HCTTCCEEECCSC-CCCCGGG---GGGGGGCTTCCEEECCSS-GGG-GSTTH--------------HHHHHHHCTTC
T ss_pred ---cCCCCCEEECCCC-cCCcchh---hHhhhcCCCCCEEEecCC-CCC-CcHhH--------------HHHHHHHCCcc
Confidence 2789999999985 5555421 124567888888888887 343 33321 01135566677
Q ss_pred cEEEecCCCcee
Q 048826 183 CKLKIYGCKKVV 194 (725)
Q Consensus 183 ~~L~l~~~~~~~ 194 (725)
+.|++++|....
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 777777665443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=5.8e-09 Score=97.68 Aligned_cols=107 Identities=18% Similarity=0.144 Sum_probs=75.9
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+++++|++++|.+. .+|..+..+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35888888888665 45577888888888888885544333455778888888888886654444556777788888888
Q ss_pred ccccCccccccccCCCCCcceeecCCCC
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
++|......+..+..+++|+.|++++|+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8887443333356777888888888774
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=5.1e-09 Score=98.06 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=86.3
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc--cccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS--GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
-+.++++++.+ +.+|..+. .+++.|++++| .+..++. .+..+++|++|++++|......|..+..+++|++|++
T Consensus 10 ~~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGL-KEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCc-CcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 35677777654 44454333 37888888885 4555543 3678888888888887666556777888888888888
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCcc-cCCCcccccceecccchh
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE-EDGLPTNLHSLWIEDNME 585 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~n~~ 585 (725)
++|......+..+..+++|++|++++|......+ ....+++|++|++++|+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8888655555567888888888888884322212 233457777788877753
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.86 E-value=7.2e-09 Score=97.03 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=90.0
Q ss_pred cEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccc
Q 048826 457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDC 536 (725)
Q Consensus 457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 536 (725)
+.++++++.+. .+|..+ .++|+.|++++| .++.+|..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666665433 344433 368999999985 56678888888999999999987655555566788899999999999
Q ss_pred cCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826 537 KRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 537 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~ 585 (725)
......+..+..+++|++|++++|. +..++. ...+++|+.|++++|+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 8655555678889999999999984 444433 33457888888887753
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=1.1e-08 Score=94.43 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=73.2
Q ss_pred CCccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCCCCcCcCcCceee
Q 048826 454 PSLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLT 532 (725)
Q Consensus 454 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 532 (725)
++|++|++++|.+.+..+..+..+++|++|++++|. ++.++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 358888888887766555567778888888888854 444543 356788888888888654433333456777888888
Q ss_pred eccccCcccccc-ccCCCCCcceeecCCCC
Q 048826 533 ILDCKRLEALPK-GLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 533 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 561 (725)
+++|... .+|. .+..+++|++|++++|+
T Consensus 107 l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcce-EeCHHHhcCCcccCEEEecCCC
Confidence 8888644 4444 34677888888888774
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.86 E-value=2e-09 Score=99.42 Aligned_cols=125 Identities=19% Similarity=0.157 Sum_probs=71.7
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCC-cCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGG-LLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l 533 (725)
+|+.|++++|.+.. ++......++|+.|++++|. ++.+ ..+..+++|++|++++|. +..+|... ..+++|++|++
T Consensus 20 ~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEEC
Confidence 47777777775553 33322223377777777743 4444 456667777777777754 34444333 56667777777
Q ss_pred ccccCcccccc--ccCCCCCcceeecCCCCCCCCccc-----CCCcccccceecccchh
Q 048826 534 LDCKRLEALPK--GLHNLTSLQQLTIGKGGELPSLEE-----DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 534 ~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~n~~ 585 (725)
++|.. +.+|. .+..+++|++|++++|+. ..++. ...+++|+.|++++|..
T Consensus 96 ~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 96 TNNSL-VELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCCC-CCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCcC-CcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 77763 45554 566677777777777632 22221 22345666666666543
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.81 E-value=2.3e-09 Score=121.73 Aligned_cols=109 Identities=19% Similarity=0.198 Sum_probs=54.2
Q ss_pred ccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCccc-CCCc
Q 048826 494 LPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE-DGLP 572 (725)
Q Consensus 494 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 572 (725)
.+..+..++.|+.|++++|. +..+|..+..+++|++|++++|... .+|..+..+++|++|+|++|. +..++. .+.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 34455566666666666644 3355555556666666666666533 566666666666666666663 223321 2223
Q ss_pred ccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 573 TNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 573 ~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
++|++|+|++|... . .+..+..+++|+.|++++
T Consensus 293 ~~L~~L~L~~N~l~--~---lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT--T---LPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TTCSEEECCSSCCC--C---CCSSTTSCTTCCCEECTT
T ss_pred CCCCEEECCCCCCC--c---cChhhhcCCCccEEeCCC
Confidence 44444444444221 1 112344555555555555
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.78 E-value=2.2e-09 Score=121.90 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=68.6
Q ss_pred hhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCC
Q 048826 469 SIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHN 548 (725)
Q Consensus 469 ~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 548 (725)
..+..+..+++|+.|++++|. +..+|..+..+++|++|+|++|. +..+|..+..+++|++|++++|... .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 345556667777777777643 44666666667777777777754 3366666667777777777777633 66666777
Q ss_pred CCCcceeecCCCCCCCCccc-CCCcccccceecccchh
Q 048826 549 LTSLQQLTIGKGGELPSLEE-DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 549 l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~n~~ 585 (725)
+++|++|+|++| .+..++. .+.+++|++|+|++|..
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence 777777777776 3334433 34456777777777754
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.78 E-value=1.2e-10 Score=110.10 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=103.3
Q ss_pred ccEEEEeccc-chhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeec
Q 048826 456 LKSLSVYGCS-KLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTIL 534 (725)
Q Consensus 456 L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 534 (725)
++...+.+.. ..+.++..+..+++|++|++++| .+..+| .+..+++|++|++++|. +..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence 5555555431 13334557888999999999985 455677 77889999999999964 55788767777899999999
Q ss_pred cccCccccccccCCCCCcceeecCCCCCCCCcc---cCCCcccccceecccchhhHHHH------hhccccccccCCCcE
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGGELPSLE---EDGLPTNLHSLWIEDNMEIWKSM------IERGRGFHRFSSLRR 605 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~~l~~L~~ 605 (725)
+|.. ..+| .+..+++|++|++++|. +..++ ....+++|++|++++|+...... ......+..+++|+.
T Consensus 102 ~N~l-~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 102 YNQI-ASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEC-CCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CCcC-CcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 9974 4465 57888999999999984 33322 34556899999999997643210 000123667888888
Q ss_pred EE
Q 048826 606 LT 607 (725)
Q Consensus 606 L~ 607 (725)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=2.8e-07 Score=96.59 Aligned_cols=211 Identities=10% Similarity=0.110 Sum_probs=130.4
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l 533 (725)
+|+.+.+.+ .........|..+++|+.+++.+ +.+..++.....+.+|+.+.+..+ +..++. .+..|++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 377777665 23333445677777788888876 355556555444677777777642 444443 4566777888877
Q ss_pred ccccCcccccc-ccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhH---HHHhhccccccccCCCcEEE
Q 048826 534 LDCKRLEALPK-GLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIW---KSMIERGRGFHRFSSLRRLT 607 (725)
Q Consensus 534 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~---~~~~~~~~~~~~l~~L~~L~ 607 (725)
.++ ++.+.. .|.. .+|+.+.+.++ +..++. ...+++|+++++.++.... ..+. ...|..+++|+.+.
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~--~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH--PYCLEGCPKLARFE 306 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC--TTTTTTCTTCCEEC
T ss_pred CCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEEC--HHHhhCCccCCeEE
Confidence 664 344433 3344 67777777443 333322 2345778888777654310 0122 26688888999888
Q ss_pred eecCCCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCCCcccCCCCC---ccc
Q 048826 608 IINCDDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKGL---PSS 683 (725)
Q Consensus 608 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~ 683 (725)
+.+ .+..++... |..+++|+.+.+.+ +++.|.. .+..+ +|+.+++.++ .+..++...+ +..
T Consensus 307 l~~---~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~ 371 (401)
T 4fdw_A 307 IPE---SIRILGQGL--------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDD 371 (401)
T ss_dssp CCT---TCCEECTTT--------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTT
T ss_pred eCC---ceEEEhhhh--------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCC
Confidence 875 344555443 34678899999965 3666654 56778 8999999885 4455554432 457
Q ss_pred ccEEEecC
Q 048826 684 LLQLHIYR 691 (725)
Q Consensus 684 L~~L~l~~ 691 (725)
+.+|.+-.
T Consensus 372 l~~l~vp~ 379 (401)
T 4fdw_A 372 ITVIRVPA 379 (401)
T ss_dssp CCEEEECG
T ss_pred ccEEEeCH
Confidence 88888776
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=7.8e-07 Score=93.23 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=72.6
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCc----ccc-cccccCCCcccEEEeccCCCccccCC-CCcCcCcCc
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENL----KIL-PSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLT 529 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~ 529 (725)
|+.+.+.++ ........|..+++|+.+++.++... ..+ +..+.++++|+.+.+.. .+..++. .+..|.+|+
T Consensus 250 L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 250 ITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCC
T ss_pred ccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCcc
Confidence 555555332 33333455666777777777653221 123 34566778888888774 2455543 456677888
Q ss_pred eeeeccccCcccc-ccccCCCCCcceeecCCCCCCCCc---ccCCCcccccceecccchh
Q 048826 530 RLTILDCKRLEAL-PKGLHNLTSLQQLTIGKGGELPSL---EEDGLPTNLHSLWIEDNME 585 (725)
Q Consensus 530 ~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~n~~ 585 (725)
.+++..+ ++.+ ...|..+ +|+.+++.++.. ..+ .+.+...+++.|.+-.+..
T Consensus 327 ~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~-~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 327 QLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTP-PQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEEECTT--CCEECTTSSSSS-CCCEEEECCSSC-CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCC-cccccccccCCCCCccEEEeCHHHH
Confidence 8888554 3334 3456777 888888888732 222 2233335788888887753
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.72 E-value=6.3e-08 Score=89.29 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=84.3
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccC-CCCcCcCcCceeee
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFP-EGGLLCAKLTRLTI 533 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l 533 (725)
.+.++++++.... +|.. ..++|+.|++++|. ++.++. .+..+++|++|++++|.. ..++ ..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~--~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTG--IPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSS-CCTT--CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCcc-CCCC--CCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEEC
Confidence 4566666664433 3332 23689999999865 445544 457889999999998654 4444 34578889999999
Q ss_pred ccccCccccccccCCCCCcceeecCCCCCCCCccc--CCCcccccceecccchh
Q 048826 534 LDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 534 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~ 585 (725)
++|......+..+..+++|++|++++|. +..++. ...+++|++|++++|+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCe
Confidence 9987554444456788899999998883 444443 23457788888888753
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=1.4e-06 Score=91.68 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=43.1
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCC-CCcCcCcCceee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLT 532 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~ 532 (725)
+|+.+.+.++ .......+|..+.+|+.+++.. .++.++ ..+.++.+|+.+.+..+ +..++. .+..|.+|+.++
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEE
Confidence 3555555432 2222233455556666666643 233332 23445566666665432 333332 344555666665
Q ss_pred eccccCccccccccCCCCCcce
Q 048826 533 ILDCKRLEALPKGLHNLTSLQQ 554 (725)
Q Consensus 533 l~~~~~~~~~~~~~~~l~~L~~ 554 (725)
+..+ .+.+...|..+++|+.
T Consensus 373 lp~~--~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 373 LPKR--LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EEGG--GGGGGGGBCTTCEEEE
T ss_pred ECCC--CEEhhheecCCCCCcE
Confidence 5443 2233334455555544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.64 E-value=4.9e-10 Score=105.75 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=55.0
Q ss_pred ccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecCCCCCCCCcccCCC
Q 048826 492 KILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIGKGGELPSLEEDGL 571 (725)
Q Consensus 492 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 571 (725)
+.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..+..+++|++|++++| .+..++....
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~ 113 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLSGIEK 113 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCCcccc
Confidence 3344467778888888888754 44566 66777788888888876 3456665566667777777776 3333332233
Q ss_pred cccccceecccch
Q 048826 572 PTNLHSLWIEDNM 584 (725)
Q Consensus 572 ~~~L~~L~l~~n~ 584 (725)
+++|++|++++|.
T Consensus 114 l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 114 LVNLRVLYMSNNK 126 (198)
T ss_dssp HHHSSEEEESEEE
T ss_pred CCCCCEEECCCCc
Confidence 3455555555543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.56 E-value=1.7e-07 Score=85.64 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=54.6
Q ss_pred ccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeec
Q 048826 456 LKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTIL 534 (725)
Q Consensus 456 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~ 534 (725)
.+.++++++.... +|..+ .++|+.|++++|......|..+..+++|++|++++|. +..++. .+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 4455555543332 33322 2556666666643333334455666666666666643 333333 34566666666666
Q ss_pred cccCccccccccCCCCCcceeecCCCC
Q 048826 535 DCKRLEALPKGLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 535 ~~~~~~~~~~~~~~l~~L~~L~l~~~~ 561 (725)
+|......+..+..+++|++|++++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 665433233346666677777776663
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=5.7e-06 Score=86.92 Aligned_cols=206 Identities=16% Similarity=0.133 Sum_probs=102.5
Q ss_pred CccEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 455 SLKSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+|+.+.+.++ ........|..+.+|+.+.+..+ +..+ ...+.++..|+.+.+..+ ...+...+....+|+.+.+
T Consensus 163 ~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 163 SLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIII 237 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEE
T ss_pred CCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEE
Confidence 4555555442 22222344556666666666542 3333 223445666666655432 2233334444456666666
Q ss_pred ccccCcccc-ccccCCCCCcceeecCCCCC-CCCcccCCCcccccceecccchhhHHHHhhccccccccCCCcEEEeecC
Q 048826 534 LDCKRLEAL-PKGLHNLTSLQQLTIGKGGE-LPSLEEDGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIINC 611 (725)
Q Consensus 534 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 611 (725)
.+.. ..+ ...+..+..|+.+.+..+.. +.. .....+..++.+...... +.. ..+..+.+|+.+.+..
T Consensus 238 p~~~--~~i~~~~f~~~~~l~~~~~~~~~~~i~~-~~F~~~~~l~~~~~~~~~-----i~~--~~F~~~~~L~~i~l~~- 306 (394)
T 4fs7_A 238 PDSF--TELGKSVFYGCTDLESISIQNNKLRIGG-SLFYNCSGLKKVIYGSVI-----VPE--KTFYGCSSLTEVKLLD- 306 (394)
T ss_dssp CTTC--CEECSSTTTTCSSCCEEEECCTTCEECS-CTTTTCTTCCEEEECSSE-----ECT--TTTTTCTTCCEEEECT-
T ss_pred CCCc--eecccccccccccceeEEcCCCcceeec-cccccccccceeccCcee-----ecc--cccccccccccccccc-
Confidence 4432 222 22445666666666655421 111 111223455555544431 111 4456667777776654
Q ss_pred CCCCccCCCCCcccccCcccCCCCCCcEEEeccCcccccccc-cccCCcCCCeEeccCCCCCcccCCCCC--cccccEEE
Q 048826 612 DDDMVSFPPEPEDVRLGTTLPLPASLTSLWISNFPNLERLSS-SIVDLQNLTSLYLLDCPKLRYFPEKGL--PSSLLQLH 688 (725)
Q Consensus 612 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~ 688 (725)
.+..++... |....+|+.+.+.+ .++.|.. ++..+.+|+.+++... ++.+....+ .++|+.+.
T Consensus 307 --~i~~I~~~a--------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 307 --SVKFIGEEA--------FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp --TCCEECTTT--------TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEE
T ss_pred --ccceechhh--------hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEE
Confidence 233333322 23566777777754 3555543 4566677777777642 566665544 25666666
Q ss_pred ec
Q 048826 689 IY 690 (725)
Q Consensus 689 l~ 690 (725)
+.
T Consensus 373 lp 374 (394)
T 4fs7_A 373 LP 374 (394)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.52 E-value=2.6e-07 Score=84.65 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=55.8
Q ss_pred cEEEEecccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCC-CcCcCcCceeeecc
Q 048826 457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEG-GLLCAKLTRLTILD 535 (725)
Q Consensus 457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~ 535 (725)
+.++++++.. +.+|..+. ++|+.|++++|......|..+.++++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 4455555433 33333332 56666666664433333455666666667776664 33444433 35666777777777
Q ss_pred ccCcccccc-ccCCCCCcceeecCCCC
Q 048826 536 CKRLEALPK-GLHNLTSLQQLTIGKGG 561 (725)
Q Consensus 536 ~~~~~~~~~-~~~~l~~L~~L~l~~~~ 561 (725)
|... .+|. .+..+++|++|++++|+
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCC
Confidence 6633 3443 36667777777777763
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.48 E-value=5.1e-07 Score=82.37 Aligned_cols=103 Identities=20% Similarity=0.177 Sum_probs=76.0
Q ss_pred CccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccccccCCCCCcceeecC
Q 048826 479 SLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPKGLHNLTSLQQLTIG 558 (725)
Q Consensus 479 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 558 (725)
..+.+++++ +.++.+|..+ .++|++|++++|......|..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 357888988 5677788766 4889999999976555557778888999999999998554444456889999999999
Q ss_pred CCCCCCCccc--CCCcccccceecccchh
Q 048826 559 KGGELPSLEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 559 ~~~~l~~~~~--~~~~~~L~~L~l~~n~~ 585 (725)
+|. +..++. ...+++|++|++++|+.
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 984 444433 34457888888888753
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.45 E-value=7.2e-07 Score=81.68 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=71.9
Q ss_pred ccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCcccccc-ccCCCCCcceeecC
Q 048826 480 LEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALPK-GLHNLTSLQQLTIG 558 (725)
Q Consensus 480 L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~ 558 (725)
-+.+++++ +.++.+|..+. ++|++|++++|......|..+..+++|++|++++|.. ..+|. .+..+++|++|+++
T Consensus 14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECC
Confidence 36788887 45677887663 7889999998765555566778888899999988874 44554 45788888999988
Q ss_pred CCCCCCCccc--CCCcccccceecccchh
Q 048826 559 KGGELPSLEE--DGLPTNLHSLWIEDNME 585 (725)
Q Consensus 559 ~~~~l~~~~~--~~~~~~L~~L~l~~n~~ 585 (725)
+|. +..++. ...+++|++|++++|+.
T Consensus 90 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 90 DNH-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SSC-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CCc-cceeCHHHhccccCCCEEEeCCCCc
Confidence 883 344333 33457777777777753
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.39 E-value=2.7e-08 Score=103.36 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=52.9
Q ss_pred CccEEEEecccchhhhhhhhcC-----CCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCC----CC-c
Q 048826 455 SLKSLSVYGCSKLESIAERLDN-----NTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPE----GG-L 523 (725)
Q Consensus 455 ~L~~L~L~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~----~~-~ 523 (725)
.|+.|++++|.+.......+.. .++|+.|++++|...... ......+++|++|++++|.....-.. .+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4777777777665543333322 257777777775432211 11122345667777776543221111 11 1
Q ss_pred CcCcCceeeeccccCcc----ccccccCCCCCcceeecCCC
Q 048826 524 LCAKLTRLTILDCKRLE----ALPKGLHNLTSLQQLTIGKG 560 (725)
Q Consensus 524 ~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~ 560 (725)
..++|++|++++|.... .++..+...++|++|++++|
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 23456666666665321 12333345566666666666
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=9.9e-07 Score=90.68 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=48.6
Q ss_pred hhcCCCCccEEEecCCCC---------cccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeeccccCccccc
Q 048826 473 RLDNNTSLEYINISNCEN---------LKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILDCKRLEALP 543 (725)
Q Consensus 473 ~~~~l~~L~~L~l~~~~~---------~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 543 (725)
+...+++|+.|.+.+... ...++..+..+|+|+.|.+++|... .++. + .+++|+.|++..|.......
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 344567788887755321 0123333456788888888876332 2332 2 36788888887776433222
Q ss_pred ccc--CCCCCcceeecCC
Q 048826 544 KGL--HNLTSLQQLTIGK 559 (725)
Q Consensus 544 ~~~--~~l~~L~~L~l~~ 559 (725)
..+ ..+|+|++|+|+.
T Consensus 211 ~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHHSBCTTCCEEEEEC
T ss_pred HHHHHccCCCCcEEEEec
Confidence 222 3678888888753
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.19 E-value=1.5e-06 Score=89.39 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=27.5
Q ss_pred hhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCC--cCcCcCceeeec
Q 048826 473 RLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGG--LLCAKLTRLTIL 534 (725)
Q Consensus 473 ~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~ 534 (725)
.+..+|+|+.|.+++|... .++. + .+++|++|++..|.........+ ..+|+|+.|+++
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3445566666666554222 2222 2 25666666666543221111111 145566666664
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.14 E-value=4.7e-06 Score=85.92 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=40.9
Q ss_pred CccEEEEec-ccchhhhhhhhcCCCCccEEEecCCCCcccccccccCCCcccEEEeccCCCccccCCCCcCcCcCceeee
Q 048826 455 SLKSLSVYG-CSKLESIAERLDNNTSLEYINISNCENLKILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTI 533 (725)
Q Consensus 455 ~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 533 (725)
+|+.|+|++ |.+....+..|+.+++|+.|++++|......|..+.++++|+.|+|++|. +..+|.......+|+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEe
Confidence 466666654 54444444555566666666666543222223344556666666666533 3334333222223556666
Q ss_pred cccc
Q 048826 534 LDCK 537 (725)
Q Consensus 534 ~~~~ 537 (725)
.+|+
T Consensus 111 ~~N~ 114 (347)
T 2ifg_A 111 SGNP 114 (347)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 5554
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=0.00012 Score=76.77 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=52.2
Q ss_pred hhhcCCCCccEEEecCCCCcccccc-cccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCcccc-ccccCC
Q 048826 472 ERLDNNTSLEYINISNCENLKILPS-GLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEAL-PKGLHN 548 (725)
Q Consensus 472 ~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~ 548 (725)
..|.++++|+.+.+.. .+..++. .+.++.+|+.+.+.. .++.++. .+..|.+|+.+.+-.+ ++.+ ...|..
T Consensus 282 ~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~ 355 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSN 355 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTT
T ss_pred cccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhC
Confidence 3455666677666643 3444432 355667777777754 2444433 4556677777777443 3333 235677
Q ss_pred CCCcceeecCCCCCCCCcccCCCcccccceecccc
Q 048826 549 LTSLQQLTIGKGGELPSLEEDGLPTNLHSLWIEDN 583 (725)
Q Consensus 549 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~n 583 (725)
|++|+.+++.++... ......+..|+.+.+..+
T Consensus 356 C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTCCEEEESSCHHH--HHTCBCCCCC--------
T ss_pred CCCCCEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence 777777777665211 112223456666666544
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=0.00025 Score=74.31 Aligned_cols=125 Identities=16% Similarity=0.275 Sum_probs=75.3
Q ss_pred hhhhcCCCCccEEEecCCCCcccc-cccccCCCcccEEEeccCCCccccCC-CCcCcCcCceeeeccccCcccc-ccccC
Q 048826 471 AERLDNNTSLEYINISNCENLKIL-PSGLHNLRQLQEITIQRCGNLESFPE-GGLLCAKLTRLTILDCKRLEAL-PKGLH 547 (725)
Q Consensus 471 ~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~ 547 (725)
..+|..+.+|+.+.+.+. ...+ ...+.++++|+.+.+.. .+..++. .+..|.+|+.+++.++ ++.+ ...|.
T Consensus 258 ~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~ 331 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFA 331 (394)
T ss_dssp TTTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred cceeeecccccEEecccc--cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhh
Confidence 345777888888888652 2233 34466788899888863 3555554 4667888999888654 4444 34678
Q ss_pred CCCCcceeecCCCCCCCCccc--CCCcccccceecccchhhHHHHhhccccccccCCCcEEEeec
Q 048826 548 NLTSLQQLTIGKGGELPSLEE--DGLPTNLHSLWIEDNMEIWKSMIERGRGFHRFSSLRRLTIIN 610 (725)
Q Consensus 548 ~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l~~ 610 (725)
.|.+|+.+.+..+ +..+.. ...|++|+.+++.++.... ..+..+.+|+.+.+..
T Consensus 332 ~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~-------~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 332 GCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW-------NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH-------HTCBCCCCC-------
T ss_pred CCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh-------hhhhccCCCCEEEeCC
Confidence 8888988888654 333322 2345778888887764332 2345566677666654
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.10 E-value=6.2e-06 Score=85.04 Aligned_cols=102 Identities=24% Similarity=0.287 Sum_probs=74.9
Q ss_pred cEEEEecccchhhhhhhhcCCCCccEEEecCCCCccccc-ccccCCCcccEEEeccCCCccccCCCCcCcCcCceeeecc
Q 048826 457 KSLSVYGCSKLESIAERLDNNTSLEYINISNCENLKILP-SGLHNLRQLQEITIQRCGNLESFPEGGLLCAKLTRLTILD 535 (725)
Q Consensus 457 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 535 (725)
..++.++++.+..+|. +..+++|+.|++++++.+..++ ..+.++++|+.|+|++|......|..+..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3467777634556777 8888899999998645566665 5688899999999999765555555678889999999999
Q ss_pred ccCccccccc-cCCCCCcceeecCCCC
Q 048826 536 CKRLEALPKG-LHNLTSLQQLTIGKGG 561 (725)
Q Consensus 536 ~~~~~~~~~~-~~~l~~L~~L~l~~~~ 561 (725)
|... .+|.. +..++ |+.|++.+|.
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSC
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCC
Confidence 8744 55544 44444 9999998884
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=1.5e-06 Score=78.10 Aligned_cols=91 Identities=8% Similarity=0.029 Sum_probs=60.2
Q ss_pred CCccEEEEecCCCCCc--CCCCCCCCccceeeecCcccceeccccccCCCCCCCCCCcceeeecccccccccccCCCCCC
Q 048826 55 SNLVILKFEDCGMCTT--WPSVGQLPSLKHLAVSGMSKVKRLGSEFYGNDSSTPFPCLETLRFEDMEEWEDWIPHGSSQG 132 (725)
Q Consensus 55 ~~L~~L~l~~c~~l~~--l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 132 (725)
.+|++|++++|. +++ +..+..+++|++|+|++|..+++-+....+.. ....++|++|++++|+++++-. ...
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~ITD~G----l~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVTDKG----IIA 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCCHHH----HHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCCHHH----HHH
Confidence 468888888884 654 33477888888888888877766543332210 0002468888888888777643 233
Q ss_pred CCCCCCccEEEeccCcCcc
Q 048826 133 VEGFPKLRELHVIRCSKLQ 151 (725)
Q Consensus 133 ~~~l~~L~~L~l~~c~~l~ 151 (725)
+..+++|++|++++|+.++
T Consensus 135 L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCEEECCCCCCCC
Confidence 4567888888888887765
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=2.2e-06 Score=88.86 Aligned_cols=87 Identities=10% Similarity=-0.016 Sum_probs=45.0
Q ss_pred cCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----ccccccCCCCCCcEEEeecCCCccccC
Q 048826 255 ICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----KLPQSSLSLSSLREIEIYKCSSLVSFP 330 (725)
Q Consensus 255 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~ 330 (725)
.++|++|++++| .++......+...+... ++|++|+|++|.+.. .++..+...++|++|+|++|. ++..+
T Consensus 154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~----~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g 227 (372)
T 3un9_A 154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGN----TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA 227 (372)
T ss_dssp TCCCCEEECCSS-CCHHHHHHHHHHHHHTC----SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred CCccceeeCCCC-CCChHHHHHHHHHHhcC----CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence 456666666665 34433222222222222 566777776666532 234445556667777777664 22211
Q ss_pred C------CCCCCCCceEEeeccC
Q 048826 331 E------VALPSKLKKIQFRECD 347 (725)
Q Consensus 331 ~------~~~l~~L~~L~l~~~~ 347 (725)
. ....++|++|++++|.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHhCCCCCEEeccCCC
Confidence 0 1124567777777665
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=8.8e-06 Score=73.13 Aligned_cols=89 Identities=8% Similarity=0.155 Sum_probs=48.2
Q ss_pred ccceeeeccccchhHHhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhc---cCCccEEEEecccCccc-
Q 048826 229 KLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCEL---SCRLEYLRLRYCKGLVK- 304 (725)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~---~~~L~~L~L~~~~~~~~- 304 (725)
.|+.|.+.++. ..+ .....+..+++|++|+|++|..+++ .++..++.. +++|++|+|++|..++.
T Consensus 62 ~L~~LDLs~~~-Itd---~GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSC-IMS---IGFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCC-CCG---GGGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCC-ccH---HHHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 46666666665 222 2222335677777777777776665 233333321 24567777777654331
Q ss_pred cccccCCCCCCcEEEeecCCCccc
Q 048826 305 LPQSSLSLSSLREIEIYKCSSLVS 328 (725)
Q Consensus 305 ~~~~~~~l~~L~~L~L~~~~~~~~ 328 (725)
=-..+..+++|++|++++|+.+++
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 112344566666666666665544
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.55 E-value=0.0095 Score=61.72 Aligned_cols=14 Identities=7% Similarity=0.142 Sum_probs=7.4
Q ss_pred hccCCCcccEEEec
Q 048826 175 SITCLPALCKLKIY 188 (725)
Q Consensus 175 ~~~~~~~L~~L~l~ 188 (725)
.+..+.+|+.+.+.
T Consensus 64 aF~~C~~L~~I~lp 77 (379)
T 4h09_A 64 NFNSCYNMTKVTVA 77 (379)
T ss_dssp TTTTCTTCCEEEEC
T ss_pred HhhCCCCCCEEEeC
Confidence 34555555555554
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.017 Score=59.86 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=9.6
Q ss_pred ccccccCCCcEEEeec
Q 048826 595 RGFHRFSSLRRLTIIN 610 (725)
Q Consensus 595 ~~~~~l~~L~~L~l~~ 610 (725)
..|..+++|+++.+..
T Consensus 327 ~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 327 YAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTTCTTCCCCCCCT
T ss_pred HHhhCCCCCCEEEECC
Confidence 4566666666666543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=0.00017 Score=66.46 Aligned_cols=60 Identities=22% Similarity=0.027 Sum_probs=30.9
Q ss_pred CcCceeeeccccCcc----ccccccCCCCCcceeec--CCCCCCCCcc------cCCCcccccceecccchhh
Q 048826 526 AKLTRLTILDCKRLE----ALPKGLHNLTSLQQLTI--GKGGELPSLE------EDGLPTNLHSLWIEDNMEI 586 (725)
Q Consensus 526 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l--~~~~~l~~~~------~~~~~~~L~~L~l~~n~~~ 586 (725)
++|++|++++|.... .+...+...++|++|++ ++|. +.... .....++|++|++++|...
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 456666666655322 13334555666777777 5552 22110 0111256777777777543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.10 E-value=0.00012 Score=71.20 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=52.6
Q ss_pred cCCCCccEEEecCCCCcc--cccccccCCCcccEEEeccCCCccccCCCCcCcC--cCceeeeccccCcccccc------
Q 048826 475 DNNTSLEYINISNCENLK--ILPSGLHNLRQLQEITIQRCGNLESFPEGGLLCA--KLTRLTILDCKRLEALPK------ 544 (725)
Q Consensus 475 ~~l~~L~~L~l~~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~------ 544 (725)
..+++|+.|++++|.... .+|..+..+++|+.|+|++|.. ..+. .+..+. +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467889999998865433 3445556788899999988653 3321 122222 788888888886654442
Q ss_pred -ccCCCCCcceee
Q 048826 545 -GLHNLTSLQQLT 556 (725)
Q Consensus 545 -~~~~l~~L~~L~ 556 (725)
.+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 346677777775
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.09 E-value=0.00027 Score=65.10 Aligned_cols=117 Identities=5% Similarity=0.040 Sum_probs=62.8
Q ss_pred hhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----ccccccCCCCCCcEEEeecCC
Q 048826 249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----KLPQSSLSLSSLREIEIYKCS 324 (725)
Q Consensus 249 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~ 324 (725)
...+...+.|++|++++|..+..-........+..- ++|++|+|++|.+.. .+...+...++|++|+|++|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~----~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC----CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 344566778888888876455543222222222222 678888888877643 234445556778888888775
Q ss_pred CccccC------CCCCCCCCceEEe--eccCcccc----cccccccCCCCcccEEEeecc
Q 048826 325 SLVSFP------EVALPSKLKKIQF--RECDALKL----LPEAWMSDTNSSLEILSIWVC 372 (725)
Q Consensus 325 ~~~~~~------~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~ 372 (725)
++.-+ .....++|++|++ ++|..-.. +.... ..+++|++|++++|
T Consensus 105 -i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L--~~n~~L~~L~L~~n 161 (185)
T 1io0_A 105 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML--EKNTTLLKFGYHFT 161 (185)
T ss_dssp -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH--HHCSSCCEEECCCS
T ss_pred -CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH--HhCCCcCEEeccCC
Confidence 33211 2223456777777 55542221 11111 12355666666655
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.82 E-value=0.00073 Score=65.55 Aligned_cols=14 Identities=36% Similarity=0.209 Sum_probs=9.5
Q ss_pred cccccCCCcEEEee
Q 048826 596 GFHRFSSLRRLTII 609 (725)
Q Consensus 596 ~~~~l~~L~~L~l~ 609 (725)
.+..+++|+.|+=.
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 45677888877643
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.85 E-value=0.1 Score=44.29 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=37.2
Q ss_pred eEEEeccCCC--CCCCCcCCCCCCCccEEEEecCCCCCcCCC--CCCCCccceeeecCcc
Q 048826 34 QFCISGYGGT--KFPTWLGDSSFSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVSGMS 89 (725)
Q Consensus 34 ~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~ 89 (725)
.++.++.+.. .+|..+ -.+|+.|+|++| .++.+|. +..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l----p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF----PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC----CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC----CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 4566666666 667544 247888888887 7888876 6778888888888775
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.75 E-value=0.24 Score=45.16 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=53.3
Q ss_pred hhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc----ccccccCCCCCCcEEEeecCC
Q 048826 249 NELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV----KLPQSSLSLSSLREIEIYKCS 324 (725)
Q Consensus 249 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~ 324 (725)
...+..-+.|++|+|+++..+..-......+.+..- ..|+.|+|++|.+.. .+.+.+..-+.|++|+|++|.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N----~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC----CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 334455678888888875455543333223333322 688888888887753 233344455778888888775
Q ss_pred CccccC------CCCCCCCCceEEeecc
Q 048826 325 SLVSFP------EVALPSKLKKIQFREC 346 (725)
Q Consensus 325 ~~~~~~------~~~~l~~L~~L~l~~~ 346 (725)
++.-+ ....-+.|++|+++++
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33322 1122345666666644
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.88 E-value=0.26 Score=41.65 Aligned_cols=37 Identities=16% Similarity=-0.024 Sum_probs=24.3
Q ss_pred cCCccEEEEecccCccccccccCCCCCCcEEEeecCC
Q 048826 288 SCRLEYLRLRYCKGLVKLPQSSLSLSSLREIEIYKCS 324 (725)
Q Consensus 288 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 324 (725)
|++|++|+|++|.+...-+..|..+++|+.|+|.+|+
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3577777777777644334456667777777777765
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.67 E-value=1.1 Score=40.73 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=61.3
Q ss_pred CCccceeeeccccchhH--HhhhhhhhhhhcCCCcEEEEccCCCcccchhhhhhHHHhhhhhccCCccEEEEecccCcc-
Q 048826 227 LPKLEELEINDMKEQTY--IWKSHNELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCKGLV- 303 (725)
Q Consensus 227 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~- 303 (725)
-+.|+.|.+.+...... ...+ ...+..-..|+.|+|++| .+.+-....+++.+..- ..|++|+|++|.+..
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N----~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANT-AISDSEARGLIELIETS----PSLRVLNVESNFLTPE 113 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHC----SSCCEEECCSSBCCHH
T ss_pred CCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcC----CccCeEecCCCcCCHH
Confidence 46678888775422222 1112 233466689999999996 56665554444545444 899999999999854
Q ss_pred ---ccccccCCCCCCcEEEeecC
Q 048826 304 ---KLPQSSLSLSSLREIEIYKC 323 (725)
Q Consensus 304 ---~~~~~~~~l~~L~~L~L~~~ 323 (725)
.+.+.+..-+.|++|+|+++
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCC
Confidence 35556666778999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.14 E-value=86 Score=24.45 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.5
Q ss_pred CCCCCCCccEEEec
Q 048826 132 GVEGFPKLRELHVI 145 (725)
Q Consensus 132 ~~~~l~~L~~L~l~ 145 (725)
.|..|.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 34555555555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.37 E-value=99 Score=24.07 Aligned_cols=31 Identities=6% Similarity=0.011 Sum_probs=15.1
Q ss_pred CCCccEEEEecCCCCCcCCC--CCCCCccceeeec
Q 048826 54 FSNLVILKFEDCGMCTTWPS--VGQLPSLKHLAVS 86 (725)
Q Consensus 54 ~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~ 86 (725)
+.+|+.+.|-. .++.+.. |..|.+|+.+.+.
T Consensus 19 c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 19 NTVIREITVQP--NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEEC
T ss_pred CCCCcEEEcCC--chheEcHHHHhccCCccEEEEc
Confidence 44555555543 3444433 5555555555554
Done!