BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048827
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 130/521 (24%), Positives = 219/521 (42%), Gaps = 89/521 (17%)
Query: 106 PAALGNLHFLEVMVISGMKHITGPIPESLSN-LTRLTQLILEDNSLEGSIPPXXXXXXXX 164
P L +L +L + TG IP+ LS LT L L N G++PP
Sbjct: 262 PLPLKSLQYLSL----AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 317
Query: 165 XXXXXXXNRLKGPIP-PSLGNLRNLLVINLGKNSVSGPIPP--TXXXXXXXXXXXXXXXX 221
N G +P +L +R L V++L N SG +P T
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 377
Query: 222 XXGFIPDALVRSQN-LTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGG 280
+P+ +N L + L NN F+GK P ++ + L L LS N L+GTIP +G
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 281 LRSLNSLKL--SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD-RPLSNVN 337
L L LKL + ++ +I ++ + + +L+ L +N+L+ G +P+ + + L+ ++
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLI---LDFNDLT-GEIPSGLSNCTNLNWIS 493
Query: 338 LAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNNQLKFDV-SE 396
L+ +L G +PK+ + +L +KLSNN ++ +E
Sbjct: 494 LSNNRLTGEIPKW-----------------------IGRLENLAILKLSNNSFSGNIPAE 530
Query: 397 IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGN--------------HFSGE 442
+ L +DL++N G++ + + + S + A ++G H +G
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 443 IPEFTEGLSLKVLN---------IGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTS 493
+ EF +G+ + LN I S GH + N + LD+ N ++G IP
Sbjct: 590 LLEF-QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 494 LGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRP---------- 543
+G + L L++ N ++G IP + +RGL + +N+L G IPQ
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 544 --------------YSIFPGSAYAHNLCLCGKPLPPCRGKN 570
+ FP + + +N LCG PLP C N
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 749
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 156/319 (48%), Gaps = 40/319 (12%)
Query: 232 RSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSE 291
R NL ++D+S+N FS P + + LQ L +S N+L+G I + LKL
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI---STCTELKLLN 250
Query: 292 MDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD--RPLSNVNLAGCKLRGALPK 349
+ S + I + SL + L+ N + G +P+++ L+ ++L+G GA+P
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFT-GEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 350 FTRPXXXXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNN---QLKFD-VSEIRFPDGLAS 405
F F + SNN +L D + ++R GL
Sbjct: 310 F----------------------FGSCSLLESLALSSNNFSGELPMDTLLKMR---GLKV 344
Query: 406 IDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEI-PEFTEG--LSLKVLNIGSNKI 462
+DL N+ +G L + N ++S L LD+S N+FSG I P + +L+ L + +N
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLL-TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 463 TGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIR 522
TG IP ++SN EL L + N ++GTIP+SLG LSKL+ L + +N L G+IP L+ ++
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 523 GLRHANFRANRLCGEIPQG 541
L N L GEIP G
Sbjct: 464 TLETLILDFNDLTGEIPSG 482
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 158/368 (42%), Gaps = 33/368 (8%)
Query: 172 NRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTXXXXXXXXXXXXXXXXXXGFIPDALV 231
N+L G ++ L ++N+ N GPIPP G IPD L
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 287
Query: 232 RS-QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIP-EQIGGLRSLNSLKL 289
+ LT +DLS N F G P + L+ L+LS N +G +P + + +R L L L
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 290 SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD--RPLSNVNLAGCKLRGAL 347
S + LP L SLL++DLS NN S +PN ++ L + L G +
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 348 P-KFTRPXXXXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNNQLKFDV-SEIRFPDGLAS 405
P + + I S ++S L+++KL N L+ ++ E+ + L +
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 406 IDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGH 465
+ L N +TG + S ++N T+ L +++ +N++TG
Sbjct: 468 LILDFNDLTGEIPSGLSNCTN-------------------------LNWISLSNNRLTGE 502
Query: 466 IPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLR 525
IP I L L +L + N +G IP LG L WLD++ N G IP ++ G
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 526 HANFRANR 533
ANF A +
Sbjct: 563 AANFIAGK 570
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 153/385 (39%), Gaps = 85/385 (22%)
Query: 241 LSNNQFSGKFPISICGLANLQDLSLSHNQLTG--TIPEQIGGLRSLNSLKLSEMDSQIRL 298
LSN+ +G C A+L L LS N L+G T +G L L +S
Sbjct: 81 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 299 PIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDR---PLSNVNLAGCKLRGALPKFTRPXX 355
+ G + SL +DLS N++S V W+ L ++ ++G K+ G + +R
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVN 198
Query: 356 XXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNNQLKFDVS-------EIRFPD------- 401
+ GI F + S+LQ++ +S N+L D S E++ +
Sbjct: 199 LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 402 ---------GLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEF------ 446
L + L N+ TG + ++ + L LD+SGNHF G +P F
Sbjct: 258 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 447 --------------------TEGLSLKVLNIGSNKITGHIPSSISNLIE----------- 475
+ LKVL++ N+ +G +P S++NL
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 476 ----------------LEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL 519
L+ L +Q N G IP +L S+L L +S N L+G IP+SL
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 520 GIRGLRHANFRANRLCGEIPQGRPY 544
+ LR N L GEIPQ Y
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMY 461
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 141/353 (39%), Gaps = 60/353 (16%)
Query: 100 YMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPXXX 159
Y+ GT+P++LG+L L + + + + G IP+ L + L LIL+ N L G IP
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKL-WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 160 XXXXXXXXXXXXNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTXXXXXXXXXXXXXX 219
NRL G IP +G L NL ++ L NS SG IP
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 220 XXXXGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN--QLTGTIPEQ 277
G IP A+ + ++ N +GK + I ++ + N + G EQ
Sbjct: 545 NLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 278 IGGLRSLNSLKL-SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRP-LSN 335
+ L + N + S + P G S++ +D+SYN LS G +P I P L
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNG--SMMFLDMSYNMLS-GYIPKEIGSMPYLFI 657
Query: 336 VNLAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNNQLKFDVS 395
+NL + G++P +V
Sbjct: 658 LNLGHNDISGSIPD-------------------------------------------EVG 674
Query: 396 EIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTE 448
++R GL +DL SN++ G + ++ T L +D+S N+ SG IPE +
Sbjct: 675 DLR---GLNILDLSSNKLDGRIPQAMSALT--MLTEIDLSNNNLSGPIPEMGQ 722
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 130/521 (24%), Positives = 219/521 (42%), Gaps = 89/521 (17%)
Query: 106 PAALGNLHFLEVMVISGMKHITGPIPESLSN-LTRLTQLILEDNSLEGSIPPXXXXXXXX 164
P L +L +L + TG IP+ LS LT L L N G++PP
Sbjct: 265 PLPLKSLQYLSL----AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
Query: 165 XXXXXXXNRLKGPIP-PSLGNLRNLLVINLGKNSVSGPIPP--TXXXXXXXXXXXXXXXX 221
N G +P +L +R L V++L N SG +P T
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 222 XXGFIPDALVRSQN-LTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGG 280
+P+ +N L + L NN F+GK P ++ + L L LS N L+GTIP +G
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 281 LRSLNSLKL--SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD-RPLSNVN 337
L L LKL + ++ +I ++ + + +L+ L +N+L+ G +P+ + + L+ ++
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLI---LDFNDLT-GEIPSGLSNCTNLNWIS 496
Query: 338 LAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNNQLKFDV-SE 396
L+ +L G +PK+ + +L +KLSNN ++ +E
Sbjct: 497 LSNNRLTGEIPKW-----------------------IGRLENLAILKLSNNSFSGNIPAE 533
Query: 397 IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGN--------------HFSGE 442
+ L +DL++N G++ + + + S + A ++G H +G
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 443 IPEFTEGLSLKVLN---------IGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTS 493
+ EF +G+ + LN I S GH + N + LD+ N ++G IP
Sbjct: 593 LLEF-QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 494 LGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRP---------- 543
+G + L L++ N ++G IP + +RGL + +N+L G IPQ
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 544 --------------YSIFPGSAYAHNLCLCGKPLPPCRGKN 570
+ FP + + +N LCG PLP C N
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 156/319 (48%), Gaps = 40/319 (12%)
Query: 232 RSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSE 291
R NL ++D+S+N FS P + + LQ L +S N+L+G I + LKL
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI---STCTELKLLN 253
Query: 292 MDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD--RPLSNVNLAGCKLRGALPK 349
+ S + I + SL + L+ N + G +P+++ L+ ++L+G GA+P
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFT-GEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 350 FTRPXXXXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNN---QLKFD-VSEIRFPDGLAS 405
F F + SNN +L D + ++R GL
Sbjct: 313 F----------------------FGSCSLLESLALSSNNFSGELPMDTLLKMR---GLKV 347
Query: 406 IDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEI-PEFTEGL--SLKVLNIGSNKI 462
+DL N+ +G L + N ++S L LD+S N+FSG I P + +L+ L + +N
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLL-TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 463 TGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIR 522
TG IP ++SN EL L + N ++GTIP+SLG LSKL+ L + +N L G+IP L+ ++
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 523 GLRHANFRANRLCGEIPQG 541
L N L GEIP G
Sbjct: 467 TLETLILDFNDLTGEIPSG 485
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 158/368 (42%), Gaps = 33/368 (8%)
Query: 172 NRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTXXXXXXXXXXXXXXXXXXGFIPDALV 231
N+L G ++ L ++N+ N GPIPP G IPD L
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 232 RS-QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIP-EQIGGLRSLNSLKL 289
+ LT +DLS N F G P + L+ L+LS N +G +P + + +R L L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 290 SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD--RPLSNVNLAGCKLRGAL 347
S + LP L SLL++DLS NN S +PN ++ L + L G +
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 348 P-KFTRPXXXXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNNQLKFDV-SEIRFPDGLAS 405
P + + I S ++S L+++KL N L+ ++ E+ + L +
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 406 IDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGH 465
+ L N +TG + S ++N T+ L +++ +N++TG
Sbjct: 471 LILDFNDLTGEIPSGLSNCTN-------------------------LNWISLSNNRLTGE 505
Query: 466 IPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLR 525
IP I L L +L + N +G IP LG L WLD++ N G IP ++ G
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 526 HANFRANR 533
ANF A +
Sbjct: 566 AANFIAGK 573
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 153/385 (39%), Gaps = 85/385 (22%)
Query: 241 LSNNQFSGKFPISICGLANLQDLSLSHNQLTG--TIPEQIGGLRSLNSLKLSEMDSQIRL 298
LSN+ +G C A+L L LS N L+G T +G L L +S
Sbjct: 84 LSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 299 PIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDR---PLSNVNLAGCKLRGALPKFTRPXX 355
+ G + SL +DLS N++S V W+ L ++ ++G K+ G + +R
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVN 201
Query: 356 XXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNNQLKFDVS-------EIRFPD------- 401
+ GI F + S+LQ++ +S N+L D S E++ +
Sbjct: 202 LEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 402 ---------GLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEF------ 446
L + L N+ TG + ++ + L LD+SGNHF G +P F
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 447 --------------------TEGLSLKVLNIGSNKITGHIPSSISNLIE----------- 475
+ LKVL++ N+ +G +P S++NL
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 476 ----------------LEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL 519
L+ L +Q N G IP +L S+L L +S N L+G IP+SL
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 520 GIRGLRHANFRANRLCGEIPQGRPY 544
+ LR N L GEIPQ Y
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMY 464
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 141/353 (39%), Gaps = 60/353 (16%)
Query: 100 YMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPXXX 159
Y+ GT+P++LG+L L + + + + G IP+ L + L LIL+ N L G IP
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKL-WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 160 XXXXXXXXXXXXNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTXXXXXXXXXXXXXX 219
NRL G IP +G L NL ++ L NS SG IP
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 220 XXXXGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN--QLTGTIPEQ 277
G IP A+ + ++ N +GK + I ++ + N + G EQ
Sbjct: 548 NLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 278 IGGLRSLNSLKL-SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRP-LSN 335
+ L + N + S + P G S++ +D+SYN LS G +P I P L
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNG--SMMFLDMSYNMLS-GYIPKEIGSMPYLFI 660
Query: 336 VNLAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGISSFFTNMSSLQNIKLSNNQLKFDVS 395
+NL + G++P +V
Sbjct: 661 LNLGHNDISGSIPD-------------------------------------------EVG 677
Query: 396 EIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTE 448
++R GL +DL SN++ G + ++ T L +D+S N+ SG IPE +
Sbjct: 678 DLR---GLNILDLSSNKLDGRIPQAMSALT--MLTEIDLSNNNLSGPIPEMGQ 725
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 137/299 (45%), Gaps = 24/299 (8%)
Query: 36 ICFEADRLVLQEFKAKILKDTTEILASWM-GKDCCGGDWEGVVCNPATGR-------VTG 87
+C D+ L + K + TT L+SW+ DCC W GV+C+ T ++G
Sbjct: 2 LCNPQDKQALLQIKKDLGNPTT--LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG 59
Query: 88 LALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILED 147
L L +P Y I P++L NL +L + I G+ ++ GPIP +++ LT+L L +
Sbjct: 60 LNLPKP------YPI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 148 NSLEGSIPPXXXXXXXXXXXXXXXNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTX- 206
++ G+IP N L G +PPS+ +L NL+ I N +SG IP +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 207 XXXXXXXXXXXXXXXXXGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLS 266
G IP + NL ++DLS N G + N Q + L+
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 267 HNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVP 325
N L + ++G ++LN L L LP L + + L S+++S+NNL G +P
Sbjct: 230 KNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLC-GEIP 285
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 86/189 (45%), Gaps = 28/189 (14%)
Query: 403 LASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLS--LKVLNIGSN 460
L ++D N ++G+L I++ + L + GN SG IP+ S + I N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPN--LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 461 KITGHIPSSISNLIELEMLDIQRNQIAGTIPT-----------------------SLGLL 497
++TG IP + +NL L +D+ RN + G +GL
Sbjct: 185 RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 498 SKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAHNLC 557
L LD+ N + G +P L ++ L N N LCGEIPQG F SAYA+N C
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 558 LCGKPLPPC 566
LCG PLP C
Sbjct: 304 LCGSPLPAC 312
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 432 LDVSGNHFSGEIPEFTEGLSLKVLNI----GSNKITGHIPSSISNLIELEMLDIQRNQIA 487
LD+SG + P + +L LN G N + G IP +I+ L +L L I ++
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 488 GTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQ 540
G IP L + L LD S N+L+G +P S+ + L F NR+ G IP
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Query: 374 FTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALD 433
F + L+ + LS NQLK ++ E + P L + +H N+IT S+ N + L
Sbjct: 96 FAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 434 VSGNHFSG-EIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPT 492
+ SG E F L + I IT IP + L L + N+I
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPP--SLTELHLDGNKITKVDAA 210
Query: 493 SLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAY 552
SL L+ L L +S NS++ SL LR + N+L ++P G + Y
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269
Query: 553 AHN 555
HN
Sbjct: 270 LHN 272
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 454 VLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLT-- 511
+L++ +NKIT NL L L + N+I+ P + L KL+ L +S N L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 512 -GKIPTSLLGIR 522
K+P +L +R
Sbjct: 116 PEKMPKTLQELR 127
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMD 293
+NL + L NN+ S P + L L+ L LS NQL +PE++ ++L L++ E +
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENE 132
Query: 294 -SQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPN 326
+++R + G+ ++ ++L N L + N
Sbjct: 133 ITKVRKSVF--NGLNQMIVVELGTNPLKSSGIEN 164
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NLT +DL+NNQ S P+S GL L +L L NQ++ P + GL +L +L+L+E
Sbjct: 243 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 298
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLS 320
+ PI + +L + L +NN+S
Sbjct: 299 EDISPI---SNLKNLTYLTLYFNNIS 321
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 143/336 (42%), Gaps = 76/336 (22%)
Query: 228 DALVRSQNLTYIDLSNNQFSGKFPIS--------------------ICGLANLQDLSLSH 267
D + NLT I+ SNNQ + P+ + L NL L+L +
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 120
Query: 268 NQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNW 327
NQ+T P L++L +L E+ S I G+ SL LS G N
Sbjct: 121 NQITDIDP-----LKNLTNLNRLELSSNTISDISALSGLTSL-------QQLSFG---NQ 165
Query: 328 IKD-RPLSNVNLAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGIS--SFFTNMSSLQNIK 384
+ D +PL+N L R ++ +S S +++L+++
Sbjct: 166 VTDLKPLAN-----------LTTLER----------LDISSNKVSDISVLAKLTNLESLI 204
Query: 385 LSNNQLKFDVSEIRFPDGLASIDLHSNQIT--GSLSSIINNRTSSFLEALDVSGNHFSGE 442
+NNQ+ D++ + L + L+ NQ+ G+L+S+ N L LD++ N S
Sbjct: 205 ATNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNL 257
Query: 443 IPEFTEGLS-LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQ 501
P GL+ L L +G+N+I+ P ++ L L L++ NQ+ P S L L
Sbjct: 258 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLT 311
Query: 502 WLDVSVNSLTGKIP-TSLLGIRGLRHANFRANRLCG 536
+L + N+++ P +SL ++ L AN + + +
Sbjct: 312 YLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS 347
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NLT +DL+NNQ S P+S GL L +L L NQ++ P + GL +L +L+L+E
Sbjct: 244 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 299
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLS 320
+ PI + +L + L +NN+S
Sbjct: 300 EDISPI---SNLKNLTYLTLYFNNIS 322
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 140/334 (41%), Gaps = 77/334 (23%)
Query: 228 DALVRSQNLTYIDLSNNQFSGKFPIS--------------------ICGLANLQDLSLSH 267
D + NLT I+ SNNQ + P+ + L NL L+L +
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121
Query: 268 NQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNW 327
NQ+T P L++L +L E+ S I G+ SL LS G N
Sbjct: 122 NQITDIDP-----LKNLTNLNRLELSSNTISDISALSGLTSL-------QQLSFG---NQ 166
Query: 328 IKD-RPLSNVNLAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGIS--SFFTNMSSLQNIK 384
+ D +PL+N L R ++ +S S +++L+++
Sbjct: 167 VTDLKPLAN-----------LTTLER----------LDISSNKVSDISVLAKLTNLESLI 205
Query: 385 LSNNQLKFDVSEIRFPDGLASIDLHSNQIT--GSLSSIINNRTSSFLEALDVSGNHFSGE 442
+NNQ+ D++ + L + L+ NQ+ G+L+S+ N L LD++ N S
Sbjct: 206 ATNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNL 258
Query: 443 IPEFTEGLS-LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQ 501
P GL+ L L +G+N+I+ P ++ L L L++ NQ+ P S L L
Sbjct: 259 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLT 312
Query: 502 WLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC 535
+L + N+++ P S + L+ F N++
Sbjct: 313 YLTLYFNNISDISPVS--SLTKLQRLFFYNNKVS 344
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NLT +DL+NNQ S P+S GL L +L L NQ++ P + GL +L +L+L+E
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLS 320
+ PI + +L + L +NN+S
Sbjct: 296 EDISPI---SNLKNLTYLTLYFNNIS 318
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 142/306 (46%), Gaps = 34/306 (11%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NLT I+ SNNQ + P+ L L D+ +++NQ+ P + L +L L L ++
Sbjct: 64 NLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTL--FNN 117
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPX 354
QI I + + +L ++LS N +S + + + L +N + ++ +P
Sbjct: 118 QIT-DIDPLKNLTNLNRLELSSNTISDISALSGL--TSLQQLNFSSNQVTDL-----KPL 169
Query: 355 XXXXXXXXXXXXTDGIS--SFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQ 412
++ +S S +++L+++ +NNQ+ D++ + L + L+ NQ
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQ 228
Query: 413 IT--GSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLS-LKVLNIGSNKITGHIPSS 469
+ G+L+S+ N L LD++ N S P GL+ L L +G+N+I+ P
Sbjct: 229 LKDIGTLASLTN------LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 470 ISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANF 529
++ L L L++ NQ+ P S L L +L + N+++ P S + L+ F
Sbjct: 279 LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVS--SLTKLQRLFF 334
Query: 530 RANRLC 535
N++
Sbjct: 335 YNNKVS 340
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Query: 374 FTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALD 433
F + L+ + LS NQLK ++ E + P L + +H N+IT S+ N + L
Sbjct: 96 FAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 434 VSGNHFSG-EIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPT 492
+ SG E F L + I IT IP + L L + N+I
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAA 210
Query: 493 SLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAY 552
SL L+ L L +S NS++ SL LR + N+L ++P G + Y
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269
Query: 553 AHN 555
HN
Sbjct: 270 LHN 272
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 454 VLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLT-- 511
+L++ +NKIT NL L L + N+I+ P + L KL+ L +S N L
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 512 -GKIPTSLLGIR 522
K+P +L +R
Sbjct: 116 PEKMPKTLQELR 127
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMD 293
+NL + L NN+ S P + L L+ L LS NQL +PE++ ++L L++ E +
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENE 132
Query: 294 -SQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPN 326
+++R + G+ ++ ++L N L + N
Sbjct: 133 ITKVRKSVF--NGLNQMIVVELGTNPLKSSGIEN 164
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NLT +DL+NNQ S P+S GL L +L L NQ++ P + GL +L +L+L+E
Sbjct: 239 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 294
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLS 320
+ PI + +L + L +NN+S
Sbjct: 295 EDISPI---SNLKNLTYLTLYFNNIS 317
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 139/334 (41%), Gaps = 77/334 (23%)
Query: 228 DALVRSQNLTYIDLSNNQFSGKFPIS--------------------ICGLANLQDLSLSH 267
D + NLT I+ SNNQ + P+ + L NL L+L +
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 116
Query: 268 NQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNW 327
NQ+T P L++L +L E+ S I G+ SL ++ N
Sbjct: 117 NQITDIDP-----LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFG----------NQ 161
Query: 328 IKD-RPLSNVNLAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGIS--SFFTNMSSLQNIK 384
+ D +PL+N L R ++ +S S +++L+++
Sbjct: 162 VTDLKPLAN-----------LTTLER----------LDISSNKVSDISVLAKLTNLESLI 200
Query: 385 LSNNQLKFDVSEIRFPDGLASIDLHSNQIT--GSLSSIINNRTSSFLEALDVSGNHFSGE 442
+NNQ+ D++ + L + L+ NQ+ G+L+S+ N L LD++ N S
Sbjct: 201 ATNNQIS-DITPLGILTNLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNL 253
Query: 443 IPEFTEGLS-LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQ 501
P GL+ L L +G+N+I+ P ++ L L L++ NQ+ P S L L
Sbjct: 254 AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLT 307
Query: 502 WLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC 535
+L + N+++ P S + L+ F N++
Sbjct: 308 YLTLYFNNISDISPVS--SLTKLQRLFFYNNKVS 339
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NLT +DL+NNQ S P+S GL L +L L NQ++ P + GL +L +L+L+E
Sbjct: 239 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 294
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLS 320
+ PI + +L + L +NN+S
Sbjct: 295 EDISPI---SNLKNLTYLTLYFNNIS 317
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 137/327 (41%), Gaps = 77/327 (23%)
Query: 235 NLTYIDLSNNQFSGKFPIS--------------------ICGLANLQDLSLSHNQLTGTI 274
NLT I+ SNNQ + P+ + L NL L+L +NQ+T
Sbjct: 64 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 123
Query: 275 PEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD-RPL 333
P L++L +L E+ S I G+ SL ++ N + D +PL
Sbjct: 124 P-----LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFG----------NQVTDLKPL 168
Query: 334 SNVNLAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGIS--SFFTNMSSLQNIKLSNNQLK 391
+N L R ++ +S S +++L+++ +NNQ+
Sbjct: 169 AN-----------LTTLER----------LDISSNKVSDISVLAKLTNLESLIATNNQIS 207
Query: 392 FDVSEIRFPDGLASIDLHSNQIT--GSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEG 449
D++ + L + L+ NQ+ G+L+S+ N L LD++ N S P G
Sbjct: 208 -DITPLGILTNLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNLAP--LSG 258
Query: 450 LS-LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVN 508
L+ L L +G+N+I+ P ++ L L L++ NQ+ P S L L +L + N
Sbjct: 259 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFN 314
Query: 509 SLTGKIPTSLLGIRGLRHANFRANRLC 535
+++ P S + L+ F N++
Sbjct: 315 NISDISPVS--SLTKLQRLFFSNNKVS 339
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NLT +DL+NNQ S P+S GL L +L L NQ++ P + GL +L +L+L+E
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLS 320
+ PI + +L + L +NN+S
Sbjct: 296 EDISPI---SNLKNLTYLTLYFNNIS 318
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 137/327 (41%), Gaps = 76/327 (23%)
Query: 235 NLTYIDLSNNQFSGKFPIS--------------------ICGLANLQDLSLSHNQLTGTI 274
NLT I+ SNNQ + P+ + L NL L+L +NQ+T
Sbjct: 64 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 123
Query: 275 PEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD-RPL 333
P L++L +L E+ S I G+ SL + S N + D +PL
Sbjct: 124 P-----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS---------SNQVTDLKPL 169
Query: 334 SNVNLAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGIS--SFFTNMSSLQNIKLSNNQLK 391
+N L R ++ +S S +++L+++ +NNQ+
Sbjct: 170 AN-----------LTTLER----------LDISSNKVSDISVLAKLTNLESLIATNNQIS 208
Query: 392 FDVSEIRFPDGLASIDLHSNQIT--GSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEG 449
D++ + L + L+ NQ+ G+L+S+ N L LD++ N S P G
Sbjct: 209 -DITPLGILTNLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNLAP--LSG 259
Query: 450 LS-LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVN 508
L+ L L +G+N+I+ P ++ L L L++ NQ+ P S L L +L + N
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFN 315
Query: 509 SLTGKIPTSLLGIRGLRHANFRANRLC 535
+++ P S + L+ F N++
Sbjct: 316 NISDISPVS--SLTKLQRLFFYNNKVS 340
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NLT +DL+NNQ S P+S GL L +L L NQ++ P + GL +L +L+L+E
Sbjct: 240 NLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 295
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLS 320
+ PI + +L + L +NN+S
Sbjct: 296 EDISPI---SNLKNLTYLTLYFNNIS 318
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 137/327 (41%), Gaps = 76/327 (23%)
Query: 235 NLTYIDLSNNQFSGKFPIS--------------------ICGLANLQDLSLSHNQLTGTI 274
NLT I+ SNNQ + P+ + L NL L+L +NQ+T
Sbjct: 64 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 123
Query: 275 PEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD-RPL 333
P L++L +L E+ S I G+ SL + S N + D +PL
Sbjct: 124 P-----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS---------SNQVTDLKPL 169
Query: 334 SNVNLAGCKLRGALPKFTRPXXXXXXXXXXXXXTDGIS--SFFTNMSSLQNIKLSNNQLK 391
+N L R ++ +S S +++L+++ +NNQ+
Sbjct: 170 AN-----------LTTLER----------LDISSNKVSDISVLAKLTNLESLIATNNQIS 208
Query: 392 FDVSEIRFPDGLASIDLHSNQIT--GSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEG 449
D++ + L + L+ NQ+ G+L+S+ N L LD++ N S P G
Sbjct: 209 -DITPLGILTNLDELSLNGNQLKDIGTLASLTN------LTDLDLANNQISNLAP--LSG 259
Query: 450 LS-LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVN 508
L+ L L +G+N+I+ P ++ L L L++ NQ+ P S L L +L + N
Sbjct: 260 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFN 315
Query: 509 SLTGKIPTSLLGIRGLRHANFRANRLC 535
+++ P S + L+ F N++
Sbjct: 316 NISDISPVS--SLTKLQRLFFSNNKVS 340
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 142/311 (45%), Gaps = 43/311 (13%)
Query: 228 DALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSL 287
D L NL ++LS+N S +S GL +LQ LS S NQ+T P + L +L L
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKP--LANLTTLERL 178
Query: 288 KLSEMDSQIRLPIILGR--GIPSLLSIDLSYNNLS-LGTVPNWIKDRPLSNVNLAGCKLR 344
+S +++ +L + + SL++ + ++++ LG + N L ++L G +L+
Sbjct: 179 DISS--NKVSDISVLAKLTNLESLIATNNQISDITPLGILTN------LDELSLNGNQLK 230
Query: 345 --GALPKFTRPXXXXXXXXXXXXXTDGISSF--FTNMSSLQNIKLSNNQLKFDVSEIRFP 400
G L T + IS+ + ++ L +KL NQ+ ++S +
Sbjct: 231 DIGTLASLTN-------LTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISPLAGL 282
Query: 401 DGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSN 460
L +++L+ NQ+ +S I N + ++L + N+ S +I + L+ L +N
Sbjct: 283 TALTNLELNENQL-EDISPISNLKNLTYLT---LYFNNIS-DISPVSSLTKLQRLFFSNN 337
Query: 461 KITGHIPSSISNLIELEMLDIQRNQIAGTIP-------TSLGLLSKLQWLDVSVNSLTG- 512
K++ SS++NL + L NQI+ P T LG L+ W + VN
Sbjct: 338 KVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG-LNDQAWTNAPVNYKANV 394
Query: 513 KIPTSLLGIRG 523
IP ++ + G
Sbjct: 395 SIPNTVKNVTG 405
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 224 GFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRS 283
F+PD +NLT++DLS Q P + L++LQ L++SHN L S
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224
Query: 284 LNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLG----TVPNWIKDR 331
L L S L SL ++L+ N+ + + WIKD+
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 432 LDVSGNHFSGEIPEFTEGLS-LKVLNIGSNKI-TGHIPSSISNLIELEMLDIQRNQIAGT 489
LD+S H GLS L+VL + N +P + L L LD+ + Q+
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 490 IPTSLGLLSKLQWLDVSVNSL 510
PT+ LS LQ L++S N+
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNF 211
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGT-IPEQIGGLRSLNSLKLSEM 292
+NL Y+D+S+ F GL++L+ L ++ N +P+ LR+L L LS+
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 293 DSQIRLPIILGRGIPSLLSIDLSYNN-LSLGTVP 325
+ P + SL +++S+NN SL T P
Sbjct: 186 QLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFP 218
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 224 GFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRS 283
F+PD +NLT++DLS Q P + L++LQ L++SHN L S
Sbjct: 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543
Query: 284 LNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLG----TVPNWIKDR 331
L L S L SL ++L+ N+ + + WIKD+
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 595
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 432 LDVSGNHFSGEIPEFTEGLS-LKVLNIGSNKI-TGHIPSSISNLIELEMLDIQRNQIAGT 489
LD+S H GLS L+VL + N +P + L L LD+ + Q+
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 490 IPTSLGLLSKLQWLDVSVNSL 510
PT+ LS LQ L++S N+
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNF 530
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 451 SLKVLNIGSNKITGH-IPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKL 500
+LK LN+ N I +P SNL LE LD+ N+I T L +L ++
Sbjct: 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQL-TGTIPEQIGGLRSLNSLKLSEM 292
+NL Y+D+S+ F GL++L+ L ++ N +P+ LR+L L LS+
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 293 DSQIRLPIILGRGIPSLLSIDLSYNN-LSLGTVP 325
+ P + SL +++S+NN SL T P
Sbjct: 505 QLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFP 537
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 224 GFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTG--TIPEQ-IGG 280
F+PD +NLT++DLS Q P + L++LQ L++SHN T P + +
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 281 LR----SLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLG----TVPNWIKDR 331
L+ SLN + S+ P SL ++L+ N+ + + WIKD+
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFP-------SSLAFLNLTQNDFACTCEHQSFLQWIKDQ 571
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 432 LDVSGNHFSGEIPEFTEGLS-LKVLNIGSNKI-TGHIPSSISNLIELEMLDIQRNQIAGT 489
LD+S H GLS L+VL + N +P + L L LD+ + Q+
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 490 IPTSLGLLSKLQWLDVSVNSL 510
PT+ LS LQ L++S N+
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNF 506
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 451 SLKVLNIGSNKITGH-IPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKL 500
+LK LN+ N I +P SNL LE LD+ N+I T L +L ++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQL-TGTIPEQIGGLRSLNSLKLSEM 292
+NL Y+D+S+ F GL++L+ L ++ N +P+ LR+L L LS+
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 293 DSQIRLPIILGRGIPSLLSIDLSYNN-LSLGTVP 325
+ P + SL +++S+NN SL T P
Sbjct: 481 QLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFP 513
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 225 FIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSL 284
+P L ++LT IDLSNN+ S S + L L LS+N+L P GL+SL
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 285 NSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD 330
L L D + +P + +L + + N L W+ D
Sbjct: 105 RLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYCDCNMQWLSD 149
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 466 IPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLR 525
+P +SN L ++D+ N+I+ S +++L L +S N L P + G++ LR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 526 HANFRANRLCGEIPQG 541
+ N + +P+G
Sbjct: 106 LLSLHGNDI-SVVPEG 120
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%)
Query: 432 LDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIP 491
L + GN F+ E + L ++++ +N+I+ S SN+ +L L + N++ P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 492 TSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRL 534
+ L L+ L + N ++ + + L H AN L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 228 DALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSL 287
+A V NL Y+DLS+N L L+ L L +N + + L L
Sbjct: 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141
Query: 288 KLSEMDSQI-RLPIIL---GRGIPSLLSIDLSYNNL------SLGTVPNWIKD 330
LS+ +QI R P+ L G +P L+ +DLS N L L +P W+K+
Sbjct: 142 YLSQ--NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 392 FDVSEIRFPD-----GLASIDLHSNQITGSLSSIINNR---TSSFLEALDVSGNHFSGEI 443
F I+ PD GLA + ++ +N+R T L+ L+++ N +
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 444 PEFTEGL-SLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQW 502
E GL +L+VLN+ N + S+ L ++ +D+Q+N IA + L KLQ
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 503 LDVSVNSLT 511
LD+ N+LT
Sbjct: 367 LDLRDNALT 375
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Query: 427 SFLEALDVSGNHFSGEIP-EFTEGLSLKVLNIGSNKIT----GHIPSSISNLIELEMLDI 481
S L+ L ++ N+ + P F+ +L+ L++ SN++T +P++ LE+LDI
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILDI 533
Query: 482 QRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG 541
RNQ+ P + L LD++ N + S I L H N + G P
Sbjct: 534 SRNQLLAPNP---DVFVSLSVLDITHNKFICECELSTF-INWLNHTNV---TIAG--PPA 584
Query: 542 RPYSIFPGS 550
Y ++P S
Sbjct: 585 DIYCVYPDS 593
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 224 GFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQI 278
F+PD +NLT++DLS Q P + L++LQ L+++ NQL ++P+ I
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGI 513
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 432 LDVSGNHFSGEIPEFTEGLS-LKVLNIGSNKI-TGHIPSSISNLIELEMLDIQRNQIAGT 489
LD+S H GLS L+VL + N +P + L L LD+ + Q+
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 490 IPTSLGLLSKLQWLDVSVNSL 510
PT+ LS LQ L+++ N L
Sbjct: 486 SPTAFNSLSSLQVLNMASNQL 506
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 370 ISSFFTNMSSLQNIKLSNNQLKFDVSEIRFP---DGLASIDLHSNQITGSLSSIINNRTS 426
+SS F + L+++ ++ LK +SE L +D+ + + I N +S
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 427 SFLEALDVSGNHFSGE-IPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRN 484
LE L ++GN F +P+ FTE +L L++ ++ P++ ++L L++L++ N
Sbjct: 447 --LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 485 QIAGTIPTSLGLLSKLQ--WL 503
Q+ L+ LQ WL
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWL 525
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 451 SLKVLNIGSNKITGH-IPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKL 500
+LK LN+ N I +P SNL LE LD+ N+I T L +L ++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQL-TGTIPEQIGGLRSLNSLKLSEM 292
+NL Y+D+S+ F GL++L+ L ++ N +P+ LR+L L LS+
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 293 DSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDR 331
+ P + SL ++++ N L +VP+ I DR
Sbjct: 481 QLEQLSPTAFN-SLSSLQVLNMASNQLK--SVPDGIFDR 516
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 73/178 (41%), Gaps = 22/178 (12%)
Query: 374 FTNMSSLQNIKLSNNQLKFDVSEI--RFPDGLASIDLHSNQI----TGSLSSIINNRTSS 427
F+ + LQ + +S N L EI P L + +H N+I G S + N
Sbjct: 98 FSPLRKLQKLYISKNHL----VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN----- 148
Query: 428 FLEALDVSGNHF--SGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQ 485
+ +++ GN SG P +GL L L I K+TG IP + L L + N+
Sbjct: 149 -MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNK 204
Query: 486 IAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRP 543
I L SKL L + N + SL + LR + N+L +P G P
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLP 261
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 367 TDGISSFFTNMSSLQNIKLSNNQLK--FDVSEI-RFPDGLASIDLHSNQITGSLSSIINN 423
TD + + + LQ + L N LK F V+ + + L ++D+ N SL+S +
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN----SLNSHAYD 421
Query: 424 RTSSFLEA---LDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLD 480
RT ++ E+ L++S N +G + +KVL++ +N+I IP +++L L+ L+
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCLPP-KVKVLDLHNNRIMS-IPKDVTHLQALQELN 479
Query: 481 IQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGL 524
+ NQ+ L+ LQ++ + N P GIR L
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYL 519
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 232 RSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSE 291
R +L ++L NQ +G P + G +++Q+L L N++ + GL L +L L +
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 292 MDSQIRLPIILGRGIPSLLSIDLSYN----NLSLGTVPNWIKDRPLS 334
+P + SL S++L+ N N L W++ + L+
Sbjct: 112 NQISCVMPGSF-EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN 157
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 429 LEALDVSGNHFSGEIPEFTEGLS-LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIA 487
L L++ N +G P EG S ++ L +G NKI L +L+ L++ NQI+
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 488 GTIPTSLGLLSKLQWLDVSVN 508
+P S L+ L L+++ N
Sbjct: 116 CVMPGSFEHLNSLTSLNLASN 136
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 457 IGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPT 516
I S+ + G +P +L++LE+ +RNQ+ G P + S +Q L + N +
Sbjct: 44 ISSDGLFGRLP----HLVKLEL---KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 517 SLLGIRGLRHANFRANRLCGEIP 539
LG+ L+ N N++ +P
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMP 119
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 399 FPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE--FTEGLSLKVLN 456
P +DL SN+++ SL S +R + L L ++ N +P F E +L+ L
Sbjct: 35 IPADTKKLDLQSNKLS-SLPSKAFHRLTK-LRLLYLNDNKLQT-LPAGIFKELKNLETLW 91
Query: 457 IGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVN---SLTGK 513
+ NK+ L+ L L + RNQ+ P L+KL +L + N SL
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 514 IPTSLLGIRGLRHANFRANRLCGEIPQG 541
+ L ++ LR N + R +P+G
Sbjct: 152 VFDKLTSLKELRLYNNQLKR----VPEG 175
>pdb|1UQW|A Chain A, Crystal Structure Of Ylib Protein From Escherichia Coi
pdb|1UQW|B Chain B, Crystal Structure Of Ylib Protein From Escherichia Coi
Length = 509
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 76 VVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLS 135
++ +PAT ++ AL++ +E+G Y +GT P L + + + + K G L
Sbjct: 154 ILAHPATAXISPAALEKYGKEIGFYPVGTGPYELDTWNQTDFVKV---KKFAGYWQPGLP 210
Query: 136 NLTRLTQLILEDNSLEGS 153
L +T + DN+ +
Sbjct: 211 KLDSITWRPVADNNTRAA 228
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 415 GSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNL 473
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 474 IELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRAN 532
EL+ L ++ N++ P L KL+ L ++ N+LT ++P LL G+ L + N
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182
Query: 533 RLCGEIPQG------RPYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 415 GSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNL 473
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 474 IELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRAN 532
EL+ L ++ N++ P L KL+ L ++ N+LT ++P LL G+ L + N
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182
Query: 533 RLCGEIPQGR------PYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 451 SLKVLNIGSNKITG-HIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKL 500
+LK LN+ N I +P SNL LE LD+ N+I T L +L ++
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 451 SLKVLNIGSNKITG-HIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKL 500
+LK LN+ N I +P SNL LE LD+ N+I T L +L ++
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 451 SLKVLNIGSNKITG-HIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKL 500
+LK LN+ N I +P SNL LE LD+ N+I T L +L ++
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 451 SLKVLNIGSNKITG-HIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKL 500
+LK LN+ N I +P SNL LE LD+ N+I T L +L ++
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 451 SLKVLNIGSNKITG-HIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKL 500
+LK LN+ N I +P SNL LE LD+ N+I T L +L ++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 415 GSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNL 473
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 474 IELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRAN 532
EL+ L ++ N++ P L KL+ L ++ N+LT ++P LL G+ L + N
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182
Query: 533 RLCGEIPQG------RPYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKL 289
+ +T I L N P + L+ + LS+NQ++ P+ GLRSLNSL L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 227 PDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT 271
P A + L IDLSNNQ S P + GL +L L L N++T
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 416 SLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLI 474
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 67 ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 125
Query: 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRANR 533
EL+ L ++ N++ P L KL+ L ++ N+LT ++P LL G+ L + N
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 184
Query: 534 LCGEIPQG------RPYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 185 LY-TIPKGFFGSHLLPFAFLHGNPW---LCNC 212
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKL 289
+ +T I L N P + L+ + LS+NQ++ P+ GLRSLNSL L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 227 PDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT 271
P A + L IDLSNNQ S P + GL +L L L N++T
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 226 IPDALV-RSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQI-GGLRS 283
+PD + + NLTY++L++NQ L NL +L LS+NQL ++PE + L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQ 182
Query: 284 LNSLKLSE 291
L L+L +
Sbjct: 183 LKDLRLYQ 190
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 416 SLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLI 474
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRANR 533
EL+ L ++ N++ P L KL+ L ++ N LT ++P LL G+ L + N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 534 LCGEIPQGR------PYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 416 SLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLI 474
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRANR 533
EL+ L ++ N++ P L KL+ L ++ N+LT ++P LL G+ L + N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 534 LCGEIPQG------RPYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 416 SLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLI 474
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRANR 533
EL+ L ++ N++ P L KL+ L ++ N LT ++P LL G+ L + N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 534 LCGEIPQGR------PYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 234 QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMD 293
Q++ +DL++ Q + P+ GL+NLQ L L NQ+T P + GL +L L +
Sbjct: 113 QSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQ 168
Query: 294 SQIRLPIILGRGIPSLLSIDLSYNNLS-LGTVPNWI----KDRPLSNV 336
P+ + +L + D +++S L ++PN I KD +S+V
Sbjct: 169 VNDLTPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDV 216
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 416 SLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLI 474
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRANR 533
EL+ L ++ N++ P L KL+ L ++ N LT ++P LL G+ L + N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 534 LCGEIPQG------RPYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 184 L-YTIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 416 SLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLI 474
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRANR 533
EL+ L ++ N++ P L KL+ L ++ N LT ++P LL G+ L + N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 534 LCGEIPQG------RPYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 416 SLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL-SLKVLNIGSNKITGHIPSSISNLI 474
L+ + + T L LD+S N +P + L +L VL++ N++T ++ L
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLL-GIRGLRHANFRANR 533
EL+ L ++ N++ P L KL+ L ++ N LT ++P LL G+ L + N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 534 LCGEIPQG------RPYSIFPGSAYAHNLCLC 559
L IP+G P++ G+ + LC C
Sbjct: 184 L-YTIPKGFFGSHLLPFAFLHGNPW---LCNC 211
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 446 FTEGLSLKVLNIGSNKITGHIPSSI-SNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLD 504
F ++LK L +GSN++ G +P + +L +L +LD+ NQ+ L L+ L
Sbjct: 60 FDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 505 VSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG 541
+ N LT ++P + + L H N+L IP G
Sbjct: 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHG 153
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 453 KVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSL-GLLSKLQWLDVSVNSLT 511
++L + N+IT P +LI L+ L + NQ+ G +P + L++L LD+ N LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 512 GKIPTSLLG-IRGLRHANFRANRLCGEIPQG 541
+P+++ + L+ N+L E+P+G
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKL-TELPRG 130
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 226 IPDALVRS-QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN-QLTGTIPEQIGGLRS 283
+P A R+ +NLT + L +N + + GLA L+ L LS N QL P GL
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 284 LNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNL 319
L++L L Q P + RG+ +L + L N L
Sbjct: 107 LHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNAL 141
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 226 IPDALVRS-QNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN-QLTGTIPEQIGGLRS 283
+P A R+ +NLT + L +N + + GLA L+ L LS N QL P GL
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 284 LNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNL 319
L++L L Q P + RG+ +L + L N L
Sbjct: 106 LHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNAL 140
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 135/306 (44%), Gaps = 28/306 (9%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294
NL Y++L+ NQ + P+S L L +L + N++T I L++L +L+
Sbjct: 67 NLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKIT-----DISALQNLTNLR------ 113
Query: 295 QIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVN-LAGCKLRGALPKFTRP 353
++ L I L ++ Y+ L+LG N PLSN L + + K P
Sbjct: 114 ELYLNEDNISDISPLANLTKXYS-LNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP 172
Query: 354 XXXXXXXXXXXXXTDGISSF--FTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSN 411
+ I +++SL NQ+ D++ + L S+ + +N
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT-DITPVANXTRLNSLKIGNN 231
Query: 412 QITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSIS 471
+IT LS + N S L L++ N S +I + LK LN+GSN+I+ S ++
Sbjct: 232 KITD-LSPLAN---LSQLTWLEIGTNQIS-DINAVKDLTKLKXLNVGSNQISD--ISVLN 284
Query: 472 NLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRA 531
NL +L L + NQ+ +G L+ L L +S N +T P L + A+F A
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXDSADF-A 341
Query: 532 NRLCGE 537
N++ +
Sbjct: 342 NQVIKK 347
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 229 ALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLK 288
A+ Q++ +DL++ Q + P+ GL+NLQ L L NQ+T P + GL +L L
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157
Query: 289 LSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS-LGTVPNWIK 329
+ P+ + +L + D +++S L ++PN I+
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIE 199
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 13 MCSVLGMFSVTSVAQERPLSQAPICFEA---DRLVLQEFKAKILKDTTEILASWM--GKD 67
+C ++G S+T V + P P C D V Q ++L + + A + GKD
Sbjct: 117 VCRIMGWGSITPVKETFP--DVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKD 174
Query: 68 CCGGDWEG-VVCN 79
CGGD G ++CN
Sbjct: 175 TCGGDSGGPLICN 187
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 13 MCSVLGMFSVTSVAQERPLSQAPICFEA---DRLVLQEFKAKILKDTTEILASWM--GKD 67
+C ++G S+T V + P P C D V Q ++L + + A + GKD
Sbjct: 117 VCRIMGWGSITPVKETFP--DVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKD 174
Query: 68 CCGGDWEG-VVCN 79
CGGD G ++CN
Sbjct: 175 TCGGDSGGPLICN 187
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 241 LSNNQFSGKFPISICG-LAN--LQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIR 297
L+N Q + +C L+N +Q+LSL++NQL T GL+ N L+++D
Sbjct: 202 LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTN---LTQLDLSYN 258
Query: 298 LPIILGRG----IPSLLSIDLSYNNL 319
+G G +PSL + L YNN+
Sbjct: 259 NLHDVGNGSFSYLPSLRYLSLEYNNI 284
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 44/193 (22%)
Query: 378 SSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGN 437
+S+ + LS N K +++ RF D +A + S ++ S N SSF
Sbjct: 212 TSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILSNSY-----NMGSSF--------G 257
Query: 438 HFSGEIPE-FT----EGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIA----- 487
H + + P+ FT E +K ++ +KI + S S+ +LE L + +N+I
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 488 ------------------GTIPTSLGL-LSKLQWLDVSVNSLTGKIPTSLLGIRGLRHAN 528
G+I + + L KL+ LD+S N + S LG+ L+
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377
Query: 529 FRANRLCGEIPQG 541
N+L +P G
Sbjct: 378 LDTNQL-KSVPDG 389
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 454 VLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGK 513
+LNI N I+ S I +L +L +L I N+I + +L++LD+S N L K
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-K 83
Query: 514 I---PTSLLGIRGLRHANFRANRLCGEI 538
I PT L L F A +C E
Sbjct: 84 ISCHPTVNLKHLDLSFNAFDALPICKEF 111
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 235 NLTYIDLSNNQFSGKFPISICGLAN-LQDLSLSHNQLTGTIP--------EQIGGLRSLN 285
N++ I+LSNNQ S KFP + + L ++L N LT IP E L
Sbjct: 434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLT 491
Query: 286 SL-----KLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAG 340
S+ KL+++ R +P L+ IDLSYN S P +PL++ L G
Sbjct: 492 SIDLRFNKLTKLSDDFR-----ATTLPYLVGIDLSYN--SFSKFPT----QPLNSSTLKG 540
Query: 341 CKLR 344
+R
Sbjct: 541 FGIR 544
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 427 SFLEALDVSGNHFSGEIPE--FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRN 484
S L L++ N F EIP F + LK++++G N + S +N + L+ L++Q+N
Sbjct: 541 SHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
Query: 485 QIAGTIPTSLG-LLSKLQWLDVSVNSLTGKIPTSLLGIRGLR--HAN---FRANRLCGEI 538
I G L LD+ N + + + H N ++ LC
Sbjct: 600 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 659
Query: 539 P--QGRPYSIFPGSA 551
P G P +F S+
Sbjct: 660 PHYHGFPVRLFDTSS 674
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 427 SFLEALDVSGNHFSGEIPE--FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRN 484
S L L++ N F EIP F + LK++++G N + S +N + L+ L++Q+N
Sbjct: 536 SHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Query: 485 QIAGTIPTSLG-LLSKLQWLDVSVNSLTGKIPTSLLGIRGLR--HAN---FRANRLCGEI 538
I G L LD+ N + + + H N ++ LC
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654
Query: 539 P--QGRPYSIFPGSA 551
P G P +F S+
Sbjct: 655 PHYHGFPVRLFDTSS 669
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 11/135 (8%)
Query: 427 SFLEALDVSGNHFSGEIPE--FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRN 484
S L L++ N F EIP F + LK++++G N + S +N + L+ L++Q+N
Sbjct: 546 SHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
Query: 485 QIAGTIPTSLG-LLSKLQWLDVSVNSLTGKIPTSLLGIRGLR--HAN---FRANRLCGEI 538
I G L LD+ N + + + H N ++ LC
Sbjct: 605 LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 664
Query: 539 P--QGRPYSIFPGSA 551
P G P +F S+
Sbjct: 665 PHYHGFPVRLFDTSS 679
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 378 SSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGN 437
+S+ + LS N K +++ RF D +A + S ++ S N SSF
Sbjct: 212 TSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILSNSY-----NMGSSF--------G 257
Query: 438 HFSGEIPE-FT----EGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPT 492
H + + P+ FT E +K ++ +KI + S S+ +LE L + +N+I
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317
Query: 493 SLGLLSKLQWLDVSVNSL 510
+ L+ L+ L + N L
Sbjct: 318 AFWGLTHLKELALDTNQL 335
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 68 CCGGDWEGVVCNPATGRVTGLAL 90
CGGDW+G++ G +TG+ +
Sbjct: 49 YCGGDWQGIINKINDGYLTGMGI 71
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 68 CCGGDWEGVVCNPATGRVTGLAL 90
CGGDW+G++ G +TG+ +
Sbjct: 49 YCGGDWQGIINKINDGYLTGMGI 71
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 68 CCGGDWEGVVCNPATGRVTGLAL 90
CGGDW+G++ G +TG+ +
Sbjct: 49 YCGGDWQGIINKINDGYLTGMGI 71
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A
Pseudo-Maltotetraose Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A
Pseudo-Maltotetraose Derived From Acarbose
Length = 686
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 68 CCGGDWEGVVCNPATGRVTGLAL 90
CGGDW+G++ G +TG+ +
Sbjct: 49 YCGGDWQGIINKINDGYLTGMGI 71
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
From Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
From Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 68 CCGGDWEGVVCNPATGRVTGLAL 90
CGGDW+G++ G +TG+ +
Sbjct: 49 YCGGDWQGIINKINDGYLTGMGI 71
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced
Cyclodextrin Glucanotransferase From Alkalophilic
Bacillus Sp. 1011 Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced
Cyclodextrin Glucanotransferase From Alkalophilic
Bacillus Sp. 1011 Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine
233-Replaced Cyclodextrin Glucanotransferase Complexed
With An Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine
233-Replaced Cyclodextrin Glucanotransferase Complexed
With An Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 68 CCGGDWEGVVCNPATGRVTGLAL 90
CGGDW+G++ G +TG+ +
Sbjct: 49 YCGGDWQGIINKINDGYLTGMGI 71
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 230 LVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGG 280
+ + LT + L+ N + + P I L+NL+ L LSHN+LT ++P ++G
Sbjct: 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 251 PISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSE-MDSQIRLPIILGRGIPSL 309
P S GL +L++L +L IG L +L L ++ +LP + +L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNL 150
Query: 310 LSIDLSYNNLSLGTVPN--WIKDRPLSNVNL 338
+ +DLSYN + TV + ++++ P N++L
Sbjct: 151 VHVDLSYNYIQTITVNDLQFLRENPQVNLSL 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,840,258
Number of Sequences: 62578
Number of extensions: 554171
Number of successful extensions: 1792
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 369
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)