Query 048827
Match_columns 576
No_of_seqs 422 out of 4565
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:51:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.3E-60 1.8E-64 538.3 40.8 511 39-562 28-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-47 2.4E-52 438.6 31.6 445 82-538 139-611 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.7E-36 1.7E-40 292.0 7.9 361 141-506 81-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.4E-35 2E-39 284.5 7.1 387 140-531 54-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.6E-37 1E-41 288.2 -17.3 414 104-556 82-539 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.5E-36 7.6E-41 282.3 -11.7 418 101-535 102-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.7E-33 3.7E-38 289.7 -5.2 419 114-558 46-489 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 3.6E-32 7.8E-37 268.2 -4.9 368 110-511 4-375 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 7.1E-32 1.5E-36 266.1 -3.9 380 83-505 7-393 (1255)
10 KOG0618 Serine/threonine phosp 100.0 5.2E-31 1.1E-35 271.5 -8.7 427 102-556 10-463 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.9E-24 4.1E-29 247.9 29.8 361 82-487 531-906 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1E-23 2.2E-28 241.8 28.0 337 156-508 552-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.9E-24 1.3E-28 200.1 -4.3 393 117-532 71-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 4.3E-20 9.4E-25 197.2 15.9 263 210-540 201-463 (788)
15 KOG4237 Extracellular matrix p 99.8 9.5E-23 2.1E-27 192.0 -4.7 375 138-535 67-477 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 2.7E-19 6E-24 191.1 17.2 265 186-518 201-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 2.2E-17 4.8E-22 177.8 11.1 118 187-320 179-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 6.2E-17 1.4E-21 174.3 14.4 246 162-463 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.9E-18 1.5E-22 168.6 3.4 106 429-534 195-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.9E-18 8.4E-23 170.5 1.1 139 182-320 77-234 (319)
21 KOG0617 Ras suppressor protein 99.6 4.5E-18 9.8E-23 142.7 -4.9 137 131-271 49-186 (264)
22 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.2E-22 138.9 -5.0 159 136-299 31-190 (264)
23 PLN03150 hypothetical protein; 99.5 2.1E-13 4.5E-18 146.6 13.9 151 36-196 368-525 (623)
24 PLN03150 hypothetical protein; 99.4 1.4E-12 3E-17 140.4 8.9 117 451-567 419-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 3.9E-13 8.3E-18 133.4 -3.8 192 354-555 75-270 (722)
26 KOG4658 Apoptotic ATPase [Sign 99.2 2.8E-11 6.1E-16 133.0 5.7 106 114-220 546-652 (889)
27 KOG3207 Beta-tubulin folding c 99.1 6.4E-12 1.4E-16 121.2 -0.3 201 332-535 122-339 (505)
28 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 4E-17 128.6 -4.1 181 102-292 87-270 (722)
29 COG4886 Leucine-rich repeat (L 99.1 2.1E-10 4.6E-15 118.0 8.0 180 160-348 114-294 (394)
30 KOG3207 Beta-tubulin folding c 99.0 4.3E-11 9.4E-16 115.5 0.8 63 136-199 119-185 (505)
31 PF14580 LRR_9: Leucine-rich r 99.0 3E-10 6.4E-15 100.3 5.7 124 136-264 17-146 (175)
32 COG4886 Leucine-rich repeat (L 99.0 3.1E-10 6.7E-15 116.8 6.7 197 311-515 97-294 (394)
33 KOG1909 Ran GTPase-activating 99.0 6.6E-11 1.4E-15 111.3 0.7 61 354-414 185-254 (382)
34 KOG4658 Apoptotic ATPase [Sign 99.0 4.3E-10 9.2E-15 123.8 6.5 261 137-423 522-792 (889)
35 KOG1909 Ran GTPase-activating 99.0 6.1E-11 1.3E-15 111.5 -1.0 134 210-343 157-310 (382)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 96.8 5.9 100 429-530 44-148 (175)
37 KOG1259 Nischarin, modulator o 98.9 7E-10 1.5E-14 102.1 2.9 132 183-320 281-412 (490)
38 KOG1259 Nischarin, modulator o 98.9 6.7E-10 1.4E-14 102.2 1.5 59 451-511 353-412 (490)
39 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 74.1 3.1 60 475-534 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.6E-13 73.2 3.2 61 450-510 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 3.3E-09 7.1E-14 109.4 -0.8 246 280-540 70-323 (414)
42 KOG0531 Protein phosphatase 1, 98.6 4.7E-09 1E-13 108.2 -1.3 129 136-271 70-199 (414)
43 KOG2120 SCF ubiquitin ligase, 98.5 2.2E-09 4.9E-14 98.8 -5.8 179 186-364 185-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.4 4E-09 8.6E-14 108.1 -8.1 125 429-559 166-293 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 8.9E-09 1.9E-13 94.9 -5.7 154 353-508 209-373 (419)
46 KOG2982 Uncharacterized conser 98.3 1.4E-07 3.1E-12 87.1 -0.8 181 234-414 71-262 (418)
47 KOG1859 Leucine-rich repeat pr 98.2 7.7E-09 1.7E-13 106.1 -10.3 125 163-294 165-291 (1096)
48 KOG4579 Leucine-rich repeat (L 98.2 1.7E-07 3.7E-12 76.6 -2.2 108 429-541 29-141 (177)
49 PF08263 LRRNT_2: Leucine rich 98.1 3.6E-06 7.9E-11 55.6 4.3 39 39-79 2-43 (43)
50 KOG2982 Uncharacterized conser 98.1 7.6E-07 1.7E-11 82.4 0.9 185 136-320 69-262 (418)
51 KOG4341 F-box protein containi 98.1 7.8E-08 1.7E-12 92.9 -5.8 152 377-528 293-458 (483)
52 COG5238 RNA1 Ran GTPase-activa 98.1 7.4E-07 1.6E-11 81.4 -0.4 41 134-174 88-132 (388)
53 KOG4579 Leucine-rich repeat (L 98.0 3.3E-07 7.2E-12 75.0 -2.8 137 402-541 28-165 (177)
54 PRK15386 type III secretion pr 98.0 4E-05 8.6E-10 76.4 10.7 52 354-411 52-104 (426)
55 COG5238 RNA1 Ran GTPase-activa 98.0 5.8E-06 1.3E-10 75.7 3.6 209 331-539 30-289 (388)
56 KOG3665 ZYG-1-like serine/thre 97.8 3.3E-06 7.3E-11 91.1 -0.1 134 113-248 122-264 (699)
57 KOG1644 U2-associated snRNP A' 97.8 4E-05 8.7E-10 67.4 5.9 104 429-533 44-151 (233)
58 PRK15386 type III secretion pr 97.8 7.9E-05 1.7E-09 74.3 8.3 53 331-388 52-104 (426)
59 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.2E-10 51.8 3.0 36 139-175 2-37 (44)
60 KOG4341 F-box protein containi 97.7 9.9E-07 2.1E-11 85.5 -5.6 285 235-540 139-444 (483)
61 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 6.9E-10 51.2 3.0 36 499-535 2-37 (44)
62 KOG1644 U2-associated snRNP A' 97.7 5.9E-05 1.3E-09 66.4 4.7 100 451-553 43-148 (233)
63 KOG3665 ZYG-1-like serine/thre 97.4 7.6E-05 1.6E-09 80.8 3.0 105 378-485 122-231 (699)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00015 3.3E-09 66.6 1.9 41 159-199 62-104 (260)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0014 3.1E-08 55.4 7.8 59 134-194 8-66 (129)
66 PF13306 LRR_5: Leucine rich r 97.1 0.0014 3E-08 55.4 6.7 105 157-266 7-111 (129)
67 KOG2123 Uncharacterized conser 96.9 5.5E-05 1.2E-09 69.8 -4.0 97 429-528 21-123 (388)
68 KOG2739 Leucine-rich acidic nu 96.7 0.0014 3E-08 60.4 3.2 86 158-247 39-129 (260)
69 KOG2123 Uncharacterized conser 96.5 0.00011 2.4E-09 67.9 -4.9 100 448-551 17-123 (388)
70 KOG1947 Leucine rich repeat pr 96.4 0.00054 1.2E-08 72.5 -1.5 62 232-293 241-306 (482)
71 KOG1947 Leucine rich repeat pr 96.3 0.00038 8.3E-09 73.7 -3.5 110 137-246 187-307 (482)
72 PF00560 LRR_1: Leucine Rich R 94.2 0.019 4.2E-07 31.4 0.7 19 476-495 2-20 (22)
73 KOG4308 LRR-containing protein 94.0 0.00054 1.2E-08 71.1 -10.5 180 333-512 89-304 (478)
74 KOG4308 LRR-containing protein 93.1 0.001 2.3E-08 69.0 -10.2 204 308-511 88-331 (478)
75 PF13504 LRR_7: Leucine rich r 91.0 0.11 2.4E-06 26.3 0.9 13 499-511 2-14 (17)
76 KOG3864 Uncharacterized conser 90.9 0.04 8.7E-07 49.0 -1.4 80 452-531 103-185 (221)
77 KOG0473 Leucine-rich repeat pr 89.9 0.0065 1.4E-07 55.0 -7.2 84 135-221 39-122 (326)
78 KOG3864 Uncharacterized conser 88.6 0.05 1.1E-06 48.4 -2.6 67 104-170 116-184 (221)
79 KOG0473 Leucine-rich repeat pr 87.9 0.02 4.3E-07 51.9 -5.6 87 446-535 38-124 (326)
80 smart00369 LRR_TYP Leucine-ric 85.7 0.59 1.3E-05 26.6 1.6 20 521-541 1-20 (26)
81 smart00370 LRR Leucine-rich re 85.7 0.59 1.3E-05 26.6 1.6 20 521-541 1-20 (26)
82 PF13516 LRR_6: Leucine Rich r 82.3 0.46 9.9E-06 26.5 0.2 14 451-464 3-16 (24)
83 KOG4242 Predicted myosin-I-bin 70.9 11 0.00024 38.4 6.3 88 354-441 354-454 (553)
84 KOG4242 Predicted myosin-I-bin 70.7 11 0.00024 38.5 6.2 22 258-279 165-186 (553)
85 smart00364 LRR_BAC Leucine-ric 68.9 3.4 7.3E-05 23.6 1.3 18 522-540 2-19 (26)
86 smart00367 LRR_CC Leucine-rich 62.2 6.3 0.00014 22.3 1.7 16 113-128 2-17 (26)
87 smart00365 LRR_SD22 Leucine-ri 59.4 8.8 0.00019 21.9 1.9 14 498-511 2-15 (26)
88 smart00368 LRR_RI Leucine rich 55.5 8 0.00017 22.4 1.4 17 354-370 2-18 (28)
89 KOG3763 mRNA export factor TAP 52.1 6.4 0.00014 41.0 0.9 62 354-416 218-285 (585)
90 PRK14762 membrane protein; Pro 47.1 34 0.00073 19.1 2.7 19 1-19 1-19 (27)
91 KOG3763 mRNA export factor TAP 42.8 10 0.00022 39.6 0.6 66 302-368 213-284 (585)
92 PF07172 GRP: Glycine rich pro 26.2 22 0.00047 28.0 -0.1 15 10-24 6-20 (95)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.3e-60 Score=538.30 Aligned_cols=511 Identities=32% Similarity=0.506 Sum_probs=329.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCCCcCcEEcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCE
Q 048827 39 EADRLVLQEFKAKILKDTTEILASWM-GKDCCGGDWEGVVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEV 117 (576)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~c~~~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~ 117 (576)
++|+.+|.+||+++. ++...+.+|. +.+|| .|.||.|+. .++|+.|+++++. +.+.++..+..+++|++
T Consensus 28 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c--~w~gv~c~~-~~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 28 AEELELLLSFKSSIN-DPLKYLSNWNSSADVC--LWQGITCNN-SSRVVSIDLSGKN------ISGKISSAIFRLPYIQT 97 (968)
T ss_pred HHHHHHHHHHHHhCC-CCcccCCCCCCCCCCC--cCcceecCC-CCcEEEEEecCCC------ccccCChHHhCCCCCCE
Confidence 488999999999986 6777789997 67899 999999984 5799999999877 66667777777777777
Q ss_pred EecCCCCCCccCCccccc-CCCCCCEEEccCCCCCc----------------------CCCccccCCCCCCEEEccCCcC
Q 048827 118 MVISGMKHITGPIPESLS-NLTRLTQLILEDNSLEG----------------------SIPPGLGHLSLLQTLSLGGNRL 174 (576)
Q Consensus 118 L~L~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~----------------------~~p~~l~~l~~L~~L~L~~~~~ 174 (576)
|+|++ +.+.+.+|..+. .+++|++|++++|.+++ .+|..++++++|++|++++|.+
T Consensus 98 L~Ls~-n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 98 INLSN-NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred EECCC-CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 77776 555656665433 55555555555555544 3344444444455555544444
Q ss_pred CCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhh
Q 048827 175 KGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISI 254 (576)
Q Consensus 175 ~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 254 (576)
.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 44444444444455555554444444444444444445555554444444444444444555555555554444444444
Q ss_pred cCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCC-CCCc
Q 048827 255 CGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIK-DRPL 333 (576)
Q Consensus 255 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L 333 (576)
+++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+. +..|..+. .++|
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L 334 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFT-GKIPVALTSLPRL 334 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccC-CcCChhHhcCCCC
Confidence 4444455555544444444444444444444454444444443333 3334444444444444443 22222221 2244
Q ss_pred cEEEccCCcCccCCCC-CC------------------------CCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCC
Q 048827 334 SNVNLAGCKLRGALPK-FT------------------------RPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNN 388 (576)
Q Consensus 334 ~~L~l~~~~~~~~~~~-~~------------------------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 388 (576)
+.|++++|.+.+.+|. +. ..++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 4444444444333332 11 2234444444444444455555666666777777777
Q ss_pred cceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhcc---------------------CCcCEEEccCCcCcccCCC-
Q 048827 389 QLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTS---------------------SFLEALDVSGNHFSGEIPE- 445 (576)
Q Consensus 389 ~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~---------------------~~L~~L~l~~n~~~~~~~~- 445 (576)
.+.+..+. +..++.|+.|++++|.+.+.++..+...+. +.|+.|++++|.+.+.+|.
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh
Confidence 66655544 445555555555555555444432221111 2367777777777777766
Q ss_pred CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCC
Q 048827 446 FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLR 525 (576)
Q Consensus 446 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 525 (576)
+..+++|+.|++++|++.+.+|..+.++++|++|+|++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|+
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 77788899999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcceecCCCCCCCCCCCcccccCCCCCCCCC
Q 048827 526 HANFRANRLCGEIPQGRPYSIFPGSAYAHNLCLCGKP 562 (576)
Q Consensus 526 ~L~l~~n~l~g~iP~~~~~~~l~~~~~~~n~~l~~~~ 562 (576)
++++++|++.|.+|..+++.++...++.|||.+||++
T Consensus 575 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999866
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-47 Score=438.59 Aligned_cols=445 Identities=34% Similarity=0.500 Sum_probs=360.3
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
..+++.|+++++. +.+.+|..+..+++|++|++++ +.+.+.+|..++++++|++|++++|.+.+.+|..++++
T Consensus 139 l~~L~~L~Ls~n~------~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 139 IPNLETLDLSNNM------LSGEIPNDIGSFSSLKVLDLGG-NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred cCCCCEEECcCCc------ccccCChHHhcCCCCCEEECcc-CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 3467888998887 6778888888899999999988 66777888888888888888888888888888888888
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEc
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDL 241 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 241 (576)
++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+..+++|++|++
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 88888888888888888888888888888888888888888888888888888888888888788888888888888888
Q ss_pred cCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCC
Q 048827 242 SNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSL 321 (576)
Q Consensus 242 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 321 (576)
++|.+.+.+|..+.++++|++|++.+|.+.+..|..+..+++|+.|++++|.+.+..|. .+..+++|+.|++++|.+.
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~- 369 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLT- 369 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeE-
Confidence 88888877888888888888888888887777777777778888888887777766665 5566677777777776654
Q ss_pred CCCCCc------------------------CC-CCCccEEEccCCcCccCCCC-CCCCCCccEEEccCCcCCCccchhhh
Q 048827 322 GTVPNW------------------------IK-DRPLSNVNLAGCKLRGALPK-FTRPDSLSSIDLSNNLLTDGISSFFT 375 (576)
Q Consensus 322 ~~~~~~------------------------~~-~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~ 375 (576)
+.+|.. +. ..+|+.|++++|.+.+..|. +..++.|+.|++++|.+++.++..+.
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 333322 22 23666666666666655544 34457777777777777777777777
Q ss_pred CCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcE
Q 048827 376 NMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKV 454 (576)
Q Consensus 376 ~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~ 454 (576)
.+++|+.|++++|.+.+..+.....++|+.|++++|++.+.+|..+..... |+.|++++|.+.+.+|. +..+++|++
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 527 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE--LMQLKLSENKLSGEIPDELSSCKKLVS 527 (968)
T ss_pred cCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc--cCEEECcCCcceeeCChHHcCccCCCE
Confidence 777888888888887777777556688999999999999988888777665 99999999999999988 889999999
Q ss_pred EEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCc-
Q 048827 455 LNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANR- 533 (576)
Q Consensus 455 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~- 533 (576)
|++++|.+++.+|..+..+++|+.|+|++|++.+.+|..+..+++|++|++++|++.+.+|.. ..+..+....+.+|+
T Consensus 528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNID 606 (968)
T ss_pred EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999964 445566667778887
Q ss_pred ceecC
Q 048827 534 LCGEI 538 (576)
Q Consensus 534 l~g~i 538 (576)
++|..
T Consensus 607 lc~~~ 611 (968)
T PLN00113 607 LCGGD 611 (968)
T ss_pred ccCCc
Confidence 55543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-36 Score=292.05 Aligned_cols=361 Identities=25% Similarity=0.259 Sum_probs=214.7
Q ss_pred CEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccC
Q 048827 141 TQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFN 220 (576)
Q Consensus 141 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 220 (576)
+.|++++|.++..-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34444444444444444444555555555444444 44443333344555555555444444444444455555555555
Q ss_pred CCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCc
Q 048827 221 LLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPI 300 (576)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 300 (576)
.++...-..|..-.++++|++++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|.+......
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 44433333344444455555555555444444444455555555555555433334444455555555555544332221
Q ss_pred cccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCC-CCCCCCccEEEccCCcCCCccchhhhCCCC
Q 048827 301 ILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPK-FTRPDSLSSIDLSNNLLTDGISSFFTNMSS 379 (576)
Q Consensus 301 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 379 (576)
.+.++++|+.|.+..|.+....-..++++.++++|+++.|++...-.. ..+++.|+.|++|.|.|..+.++.+..+++
T Consensus 240 -tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 240 -TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred -hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 445555555555555555433333444445566666666655433322 455677888888888887777777777778
Q ss_pred CCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC----CCCCCCCcE
Q 048827 380 LQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE----FTEGLSLKV 454 (576)
Q Consensus 380 L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~L~~ 454 (576)
|++|+|++|.++...+. +..+..|++|+++.|.+.......+....+ |++|++++|.+...+.+ +..+++|+.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss--L~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS--LHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh--hhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 88888888877755544 677777888888888777555555555554 78888888877776654 667888888
Q ss_pred EEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCC
Q 048827 455 LNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVS 506 (576)
Q Consensus 455 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~ 506 (576)
|++.+|++......+|.++.+|++|||.+|.|...-|+.|..+ .|++|-+.
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 8888888886666788888888888888888887777888877 77777654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-35 Score=284.46 Aligned_cols=387 Identities=26% Similarity=0.266 Sum_probs=256.7
Q ss_pred CCEEEccCCCCCcCCCccccCC--CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEc
Q 048827 140 LTQLILEDNSLEGSIPPGLGHL--SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDF 217 (576)
Q Consensus 140 L~~L~l~~~~~~~~~p~~l~~l--~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 217 (576)
-+.|+++++.+...-...+... +.-+.||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3567888887763322223222 23456999999998777888889999999999999887 67876666677999999
Q ss_pred ccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccc
Q 048827 218 SFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIR 297 (576)
Q Consensus 218 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 297 (576)
.+|.|+..-.+.+..++.|+.||++.|.++..--..|..-.++++|+|++|+|+......|..+.+|-.|.|+.|.++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 99988877777888889999999999988854444566667899999999998877777788888888888888887654
Q ss_pred cCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCC-CCCCCCccEEEccCCcCCCccchhhhC
Q 048827 298 LPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPK-FTRPDSLSSIDLSNNLLTDGISSFFTN 376 (576)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 376 (576)
|...+..+++|+.|++..|.+.....-.+-+.++|+.|.+..|.+...-.. |.++.++++|+|+.|++...-..|+.+
T Consensus 213 -p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 -PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred -CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 444777888888888888887644444455555777777777766543322 455566777777777766666666666
Q ss_pred CCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcE
Q 048827 377 MSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKV 454 (576)
Q Consensus 377 l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~ 454 (576)
++.|+.|++++|.+...-.. +..+++|++|++++|+++...+..+..... |++|++++|.+.-.-.. |..+.+|++
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~--Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ--LEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH--hhhhcccccchHHHHhhHHHHhhhhhh
Confidence 77777777777766543333 666666666666666666655555554443 56666666655532222 455555666
Q ss_pred EEccCCcCCccC---hhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccC
Q 048827 455 LNIGSNKITGHI---PSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRA 531 (576)
Q Consensus 455 L~L~~n~l~~~~---~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 531 (576)
|+|++|.+...+ ...|.++++|+.|++.+|++...-...|..+..|+.|+|.+|.+-..-|.+|..+ .|+.|.+..
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 666665554332 2335555555666666665553333455555556666666555555555555555 555555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=4.6e-37 Score=288.19 Aligned_cols=414 Identities=23% Similarity=0.328 Sum_probs=184.4
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCC
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG 183 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 183 (576)
++|++++++..++.++.++ +.+. .+|+.++.+..|+.+++++|.+. .+|++++.+..|+.|+..+|+++ .+|.+++
T Consensus 82 ~lp~aig~l~~l~~l~vs~-n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~ 157 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSH-NKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMV 157 (565)
T ss_pred hCCHHHHHHHHHHHhhccc-chHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHH
Confidence 4444444444444444444 2222 34444444445555555555444 44444444555555555555444 4444444
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeE
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDL 263 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 263 (576)
.+.+|..+++.+|++....|..+ +++.|++|+...|-++ .+|+.++.+.+|..|++..|.+. ..| .|.++..|+++
T Consensus 158 ~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~El 233 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKEL 233 (565)
T ss_pred HHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHH
Confidence 44455555555554442222222 2445555554444333 44444555555555555555544 333 44445555555
Q ss_pred EeecccCcCCChhhh-cCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCc
Q 048827 264 SLSHNQLTGTIPEQI-GGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCK 342 (576)
Q Consensus 264 ~L~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 342 (576)
.+..|++. .+|... .+++++..||+.+|++..... ....+++|++||+++|.++ .+|...+...|+.|.+.+|.
T Consensus 234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pd--e~clLrsL~rLDlSNN~is--~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPD--EICLLRSLERLDLSNNDIS--SLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred HhcccHHH-hhHHHHhcccccceeeeccccccccCch--HHHHhhhhhhhcccCCccc--cCCcccccceeeehhhcCCc
Confidence 55555444 333322 245555555555554433221 2223444555555555544 44444444444444444443
Q ss_pred CccCCCCCCCCCCccEEEccCCcCCCccchhhhCCC--CCCeE-------EccCCcc---------eeeCCCCCCCCCCC
Q 048827 343 LRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMS--SLQNI-------KLSNNQL---------KFDVSEIRFPDGLA 404 (576)
Q Consensus 343 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L-------~L~~n~~---------~~~~~~~~~~~~L~ 404 (576)
+..+-.+.+..-+ -|++| .++..+- .+..+......+.+
T Consensus 309 -----------------------lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tk 365 (565)
T KOG0472|consen 309 -----------------------LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTK 365 (565)
T ss_pred -----------------------hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhh
Confidence 3221000000000 00000 0000000 00000111122333
Q ss_pred EEEccCCcCccccchhhhhhccCCcCEEEccCCcCcc-----------------------cCCC-CCCCCCCcEEEccCC
Q 048827 405 SIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSG-----------------------EIPE-FTEGLSLKVLNIGSN 460 (576)
Q Consensus 405 ~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----------------------~~~~-~~~~~~L~~L~L~~n 460 (576)
.|++++-+++..+.+.+......-+..+++++|++.. -+|. +..+++|..|++++|
T Consensus 366 iL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 366 ILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred hhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence 3333333333332222222221123333333333221 1122 444555666666655
Q ss_pred cCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCC
Q 048827 461 KITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQ 540 (576)
Q Consensus 461 ~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~ 540 (576)
-+. .+|..++.+..|+.|+++.|++. .+|+++..+..++.+-.++|++...-|+.+.++..|+.||+.+|.+. .||.
T Consensus 446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 554 45555555656666666666555 55655555555555555556655444444666666666666666666 4444
Q ss_pred C-CCCCCCCcccccCCC
Q 048827 541 G-RPYSIFPGSAYAHNL 556 (576)
Q Consensus 541 ~-~~~~~l~~~~~~~n~ 556 (576)
. +.+.+++++.+.|||
T Consensus 523 ~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhccccceeEEEecCCc
Confidence 4 666666666666665
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=3.5e-36 Score=282.30 Aligned_cols=418 Identities=25% Similarity=0.313 Sum_probs=337.7
Q ss_pred eeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCc
Q 048827 101 MIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPP 180 (576)
Q Consensus 101 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~ 180 (576)
-..++|+.+..+..++.++.++ +.+. .+|+.++.+..|..++..+|+++ ..|.+++++.+|..|++.+|+++ .+|.
T Consensus 102 ~ls~lp~~i~s~~~l~~l~~s~-n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~ 177 (565)
T KOG0472|consen 102 KLSELPEQIGSLISLVKLDCSS-NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPE 177 (565)
T ss_pred hHhhccHHHhhhhhhhhhhccc-ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCH
Confidence 3568999999999999999998 5444 67889999999999999999999 89999999999999999999999 5555
Q ss_pred cCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhc-CCCC
Q 048827 181 SLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISIC-GLAN 259 (576)
Q Consensus 181 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~ 259 (576)
..-+++.|++||...|-++ .+|..++.+.+|..|++..|++. .+| .|..+..|++++++.|++. .+|.... .+++
T Consensus 178 ~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~ 253 (565)
T KOG0472|consen 178 NHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS 253 (565)
T ss_pred HHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc
Confidence 5556999999999999877 78899999999999999999998 566 7999999999999999998 7777665 8999
Q ss_pred CCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCC---CccEE
Q 048827 260 LQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDR---PLSNV 336 (576)
Q Consensus 260 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~---~L~~L 336 (576)
+.+||+..|++. ..|..+.-+++|+.||+++|.+++..+ .++++ .|+.|.+.+|.+.... .+.+... -|++|
T Consensus 254 l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlrTiR-r~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 254 LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLRTIR-REIISKGTQEVLKYL 328 (565)
T ss_pred ceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchHHHH-HHHHcccHHHHHHHH
Confidence 999999999998 788889999999999999999886554 56777 9999999999874110 0000000 11111
Q ss_pred E-------ccCC---c------CccCCCCCCCCCCccEEEccCCcCCCccchhhhCC--CCCCeEEccCCcceeeCCCCC
Q 048827 337 N-------LAGC---K------LRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNM--SSLQNIKLSNNQLKFDVSEIR 398 (576)
Q Consensus 337 ~-------l~~~---~------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~ 398 (576)
. ++.. . ..+..|......+.+.|++++-+++....+.|..- .-.+..++++|.+...+..+.
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~ 408 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV 408 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence 0 0000 0 01112222333678899999999988665555432 347889999999986555566
Q ss_pred CCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCe
Q 048827 399 FPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEM 478 (576)
Q Consensus 399 ~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 478 (576)
.+..+.+.-+..++..+.+|..+..... |..|++++|.+.....+++.+..|+.|+++.|+|. .+|+.+-.+..++.
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~k--Lt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQK--LTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLET 485 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhc--ceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHH
Confidence 6666665555566667788888887766 99999999988854444888889999999999998 88999888888998
Q ss_pred eeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcce
Q 048827 479 LDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 479 L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
+-.++|++....|+.+..+.+|.+||+.+|.+. .+|..+.++++|++|++++|+|.
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 989999999777777999999999999999998 89999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-33 Score=289.71 Aligned_cols=419 Identities=24% Similarity=0.314 Sum_probs=277.5
Q ss_pred CCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEc
Q 048827 114 FLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINL 193 (576)
Q Consensus 114 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l 193 (576)
+|+.|++++ +.+ +..|..+..+.+|+.|+++.|.+. ..|.+.+++.+|++|.|.+|.+. .+|..+..+++|++|++
T Consensus 46 ~L~~l~lsn-n~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSN-NQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccc-ccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 355555553 222 344555555555555555555555 44555555555555555555544 45555555555555555
Q ss_pred cCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCC
Q 048827 194 GKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGT 273 (576)
Q Consensus 194 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 273 (576)
++|.+. ..|..+..++.+..+..++|..... ++... ++.+++..|.+.+.++..+..++. .|++.+|.+. .
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~ 192 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V 192 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h
Confidence 555544 4444455555555555555511111 11111 556666666666666666665555 5777777665 1
Q ss_pred ChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCC
Q 048827 274 IPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRP 353 (576)
Q Consensus 274 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 353 (576)
..+.++++|+.|....|.+.... ..-++++.|+.++|.++ ..-......+|++++++.+++.+.......+
T Consensus 193 --~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~ 263 (1081)
T KOG0618|consen 193 --LDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISHNNLSNLPEWIGAC 263 (1081)
T ss_pred --hhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcce--eeccccccccceeeecchhhhhcchHHHHhc
Confidence 23556666666666666554321 23456777777777665 1111222237777788777777555334455
Q ss_pred CCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhh---------
Q 048827 354 DSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNR--------- 424 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~--------- 424 (576)
.+|+.+++..|.++. +|..+....+|+.|.+..|++....+......+|++|++..|.+....+..+...
T Consensus 264 ~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 264 ANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred ccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 778888887777744 5666666777777777777777666667778888888888887764433221110
Q ss_pred --------------ccCCcCEEEccCCcCcccCC-CCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCcc
Q 048827 425 --------------TSSFLEALDVSGNHFSGEIP-EFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGT 489 (576)
Q Consensus 425 --------------~~~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~ 489 (576)
..+.|+.|.+.+|.+++..- .+.++++|+.|+|++|++.......+.++..|++|+||+|+++ .
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-T 421 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-h
Confidence 01447889999999988654 4889999999999999999666678899999999999999999 8
Q ss_pred CcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcce-ecCCCCCCCCCCCcccccCCCCC
Q 048827 490 IPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC-GEIPQGRPYSIFPGSAYAHNLCL 558 (576)
Q Consensus 490 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-g~iP~~~~~~~l~~~~~~~n~~l 558 (576)
+|..+..+..|++|...+|++. .+| .+.++++|+.+|++.|+++ +.+|.....+.|+.+|++||..+
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 9999999999999999999999 888 7899999999999999997 55565555589999999999854
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.6e-32 Score=268.17 Aligned_cols=368 Identities=26% Similarity=0.370 Sum_probs=266.3
Q ss_pred cCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCc
Q 048827 110 GNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLL 189 (576)
Q Consensus 110 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 189 (576)
+-++..|-.|++++..-.+.+|.....+++++.|.|....+. .+|+.++.+.+|++|.+.+|++. .+-..++.++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 456778888999844333678999999999999999998888 88999999999999999999987 5556788889999
Q ss_pred EEEccCCccc-ccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCch-hhcCCCCCCeEEeec
Q 048827 190 VINLGKNSVS-GPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPI-SICGLANLQDLSLSH 267 (576)
Q Consensus 190 ~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~ 267 (576)
.+.+..|++. ..+|..+-.+..|+.|+|+.|++. ..|..+...+++-.|++++|++. .+|. .+.+++.|-.|+|++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 9999888875 346778888999999999999888 67888888888899999999988 4554 456888888899999
Q ss_pred ccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCC
Q 048827 268 NQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGAL 347 (576)
Q Consensus 268 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 347 (576)
|++. .+|..+..+..|++|+|++|.+...--. -+..+++|+.|.+++.+-+...+ +
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-QLPsmtsL~vLhms~TqRTl~N~----------------------P 215 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLR-QLPSMTSLSVLHMSNTQRTLDNI----------------------P 215 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHh-cCccchhhhhhhcccccchhhcC----------------------C
Confidence 9887 6777777888888888888765422100 11123344444444444332222 2
Q ss_pred CCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccC
Q 048827 348 PKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSS 427 (576)
Q Consensus 348 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~ 427 (576)
+.+.++.+|..+|+|.|++.. .|+.+..+++|+.|+|++|+++..........+|++|++|.|+++ .+|..++..+.
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k- 292 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK- 292 (1255)
T ss_pred CchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHH-
Confidence 334455778888888888765 788888888999999999888865555666677777788777776 34555544433
Q ss_pred CcCEEEccCCcCcc-cCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeC
Q 048827 428 FLEALDVSGNHFSG-EIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDV 505 (576)
Q Consensus 428 ~L~~L~l~~n~~~~-~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L 505 (576)
|+.|.+.+|.+.= -+|. ++.+.+|+.+..++|.+. ..|+.++.|..|+.|.|+.|.+. .+|+.+.-++.|+.||+
T Consensus 293 -L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 293 -LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred -HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence 6666666665542 2333 666666777777666665 66777777777777777777766 66777777777777777
Q ss_pred CCCcCc
Q 048827 506 SVNSLT 511 (576)
Q Consensus 506 ~~n~l~ 511 (576)
..|+-.
T Consensus 370 reNpnL 375 (1255)
T KOG0444|consen 370 RENPNL 375 (1255)
T ss_pred cCCcCc
Confidence 776655
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.1e-32 Score=266.10 Aligned_cols=380 Identities=26% Similarity=0.385 Sum_probs=297.3
Q ss_pred CCEEEEEcCCCCcCCCCcee-eecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 83 GRVTGLALQRPDRELGMYMI-GTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 83 ~~v~~l~l~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
.-|+++|+++++ +. +..|.....++.++.|.|.. ..+. .+|+.++.+.+|.+|.++.|++. .+-..++.+
T Consensus 7 pFVrGvDfsgND------Fsg~~FP~~v~qMt~~~WLkLnr-t~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~L 77 (1255)
T KOG0444|consen 7 PFVRGVDFSGND------FSGDRFPHDVEQMTQMTWLKLNR-TKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDL 77 (1255)
T ss_pred ceeecccccCCc------CCCCcCchhHHHhhheeEEEech-hhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccc
Confidence 468899999998 66 57899999999999999987 5554 68999999999999999999988 667789999
Q ss_pred CCCCEEEccCCcCCC-CCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEE
Q 048827 162 SLLQTLSLGGNRLKG-PIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYID 240 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 240 (576)
+.||.+++++|++.. -+|..+.++..|.+|||+.|++. ..|..+..-+++-.|+|++|+|..+.-..+.++..|-.||
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 999999999999864 57889999999999999999998 7899999999999999999999844445577899999999
Q ss_pred ccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccc-cCccccCCCCCCCEEECcCCCC
Q 048827 241 LSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIR-LPIILGRGIPSLLSIDLSYNNL 319 (576)
Q Consensus 241 l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l 319 (576)
+++|.+. .+|..+..+.+|++|.|++|.+.-.-...+-.+++|+.|.+++.+-+.. +|. .+..+.+|..++++.|.+
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCC
Confidence 9999998 7888999999999999999988644344555677888999998775543 444 778899999999999988
Q ss_pred CCCCCCCcCCC-CCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcce--eeCCC
Q 048827 320 SLGTVPNWIKD-RPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLK--FDVSE 396 (576)
Q Consensus 320 ~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~ 396 (576)
. .+|+.+.. .+|+.|++++|+++..-.......+|+.|++|.|+++. +|..+..++.|+.|...+|++. |.++.
T Consensus 235 p--~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 235 P--IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred C--cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccc
Confidence 6 55654433 37888888888776443333333677777777777765 6777777777777777777654 22222
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCcc
Q 048827 397 IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIE 475 (576)
Q Consensus 397 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 475 (576)
++.+.+ |+.+..++|.+. ..|. +..|..|+.|.|+.|++. .+|+++.-++.
T Consensus 312 IGKL~~--------------------------Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~ 363 (1255)
T KOG0444|consen 312 IGKLIQ--------------------------LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD 363 (1255)
T ss_pred hhhhhh--------------------------hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence 444444 444555544443 4455 788899999999999998 78999999999
Q ss_pred CCeeeCccCcCCccCcccccCCCCCCEEeC
Q 048827 476 LEMLDIQRNQIAGTIPTSLGLLSKLQWLDV 505 (576)
Q Consensus 476 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L 505 (576)
|+.||+..|+-.-.-|.--..-++|+.-++
T Consensus 364 l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred cceeeccCCcCccCCCCcchhhhcceeeec
Confidence 999999999877444432222245554443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=5.2e-31 Score=271.52 Aligned_cols=427 Identities=23% Similarity=0.296 Sum_probs=349.7
Q ss_pred eeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCcc
Q 048827 102 IGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPS 181 (576)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~ 181 (576)
...+|..+..-..+..|++..+..+... .+.+.+.-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+
T Consensus 10 l~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s 86 (1081)
T KOG0618|consen 10 LELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSS 86 (1081)
T ss_pred CcccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchh
Confidence 3456777766667888888885444444 334445555999999999988 88999999999999999999998 78889
Q ss_pred CCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCC
Q 048827 182 LGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQ 261 (576)
Q Consensus 182 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 261 (576)
..++.+|++++|.+|.+. ..|..+..+++|++|++++|.+. .+|..+..+..+..+..++|.-.. .++... ++
T Consensus 87 ~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik 159 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IK 159 (1081)
T ss_pred hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-ch
Confidence 999999999999999887 88999999999999999999987 788889999999999999993221 233333 88
Q ss_pred eEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCC
Q 048827 262 DLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGC 341 (576)
Q Consensus 262 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 341 (576)
.+++..+.+.+.++..+..+.. .|++++|.... ..+..+++|+.+....|.+.... ...++++.|+...|
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~----~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV----LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHN 229 (1081)
T ss_pred hhhhhhhhcccchhcchhhhhe--eeecccchhhh----hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccC
Confidence 8999999988888877777766 79999998762 25678899999999998876222 23348999999999
Q ss_pred cCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhh
Q 048827 342 KLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSII 421 (576)
Q Consensus 342 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 421 (576)
.+.. .....-+.+|++++++.|++++ +|.|+..+.+|+.++..+|.++.....+...++|+.|.+..|.+....+..
T Consensus 230 ~l~~-~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l- 306 (1081)
T KOG0618|consen 230 PLTT-LDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL- 306 (1081)
T ss_pred ccee-eccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc-
Confidence 9873 3333345899999999999998 669999999999999999999755555888899999999999987554433
Q ss_pred hhhccCCcCEEEccCCcCcccCCC--------------------------CCCCCCCcEEEccCCcCCccChhhhhcCcc
Q 048827 422 NNRTSSFLEALDVSGNHFSGEIPE--------------------------FTEGLSLKVLNIGSNKITGHIPSSISNLIE 475 (576)
Q Consensus 422 ~~~~~~~L~~L~l~~n~~~~~~~~--------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 475 (576)
...+. |++|++..|.+....+. -...+.|+.|++.+|.+++..-..+.+..+
T Consensus 307 e~~~s--L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 307 EGLKS--LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred cccce--eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 32233 99999999987742221 012346888999999999988889999999
Q ss_pred CCeeeCccCcCCccCc-ccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCCCCCCCCCCcccccC
Q 048827 476 LEMLDIQRNQIAGTIP-TSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAH 554 (576)
Q Consensus 476 L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~~~~~~l~~~~~~~ 554 (576)
|+.|+|++|++. ++| ..+.++..|+.|+|++|+++ .+|+.+..+..|++|...+|++. ..|...+.+.++.+|++.
T Consensus 385 LKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 385 LKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSC 461 (1081)
T ss_pred eeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEeccc
Confidence 999999999998 555 67789999999999999999 89999999999999999999999 889778999999999999
Q ss_pred CC
Q 048827 555 NL 556 (576)
Q Consensus 555 n~ 556 (576)
|.
T Consensus 462 N~ 463 (1081)
T KOG0618|consen 462 NN 463 (1081)
T ss_pred ch
Confidence 83
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.9e-24 Score=247.86 Aligned_cols=361 Identities=19% Similarity=0.217 Sum_probs=210.9
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCC-----CCccCCcccccCCC-CCCEEEccCCCCCcCCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMK-----HITGPIPESLSNLT-RLTQLILEDNSLEGSIP 155 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-----~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~p 155 (576)
+.+|+++.+...... ....-+..|..+++|++|.+.... .....+|..+..++ +||.|.+.++.+. .+|
T Consensus 531 ~~~v~~i~l~~~~~~----~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP 605 (1153)
T PLN03210 531 TKKVLGITLDIDEID----ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMP 605 (1153)
T ss_pred cceeeEEEeccCccc----eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCC
Confidence 456666665433200 111223456677777777765411 12223455454443 4666666666655 555
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCC
Q 048827 156 PGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQN 235 (576)
Q Consensus 156 ~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 235 (576)
..+ ...+|++|++.++.+. .++..+..+++|++|+++++...+.+|. +..+++|++|++++|.....+|..+..+++
T Consensus 606 ~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 606 SNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred CcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCC
Confidence 555 3566666666666655 4555555666666666665543334442 555556666666555444455555555555
Q ss_pred CCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECc
Q 048827 236 LTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLS 315 (576)
Q Consensus 236 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 315 (576)
|+.|++++|.....+|..+ ++++|+.|++++|.....+|. ..++|++|+++
T Consensus 683 L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----------------------------~~~nL~~L~L~ 733 (1153)
T PLN03210 683 LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----------------------------ISTNISWLDLD 733 (1153)
T ss_pred CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----------------------------ccCCcCeeecC
Confidence 5555555543333444333 444555555555443322222 12345555555
Q ss_pred CCCCCCCCCCCcCCCCCccEEEccCCcCcc-------CCCC-CCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccC
Q 048827 316 YNNLSLGTVPNWIKDRPLSNVNLAGCKLRG-------ALPK-FTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSN 387 (576)
Q Consensus 316 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 387 (576)
+|.+. .+|......+|++|.+.++.... ..+. ...+++|+.|++++|.....+|..+.++++|+.|++++
T Consensus 734 ~n~i~--~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 734 ETAIE--EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCccc--cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 55543 34444444455555555432111 0111 12237889999999887777888889999999999988
Q ss_pred CcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCccC
Q 048827 388 NQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHI 466 (576)
Q Consensus 388 n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~ 466 (576)
|...+..|....+++|+.|++++|.....+|... ++|+.|++++|.+.. +|. +..+++|++|++++|+-...+
T Consensus 812 C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~-----~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 812 CINLETLPTGINLESLESLDLSGCSRLRTFPDIS-----TNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCcCeeCCCCCccccCEEECCCCCccccccccc-----cccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCcc
Confidence 8654455554467888888888887666555432 238888888888774 444 777888888888886655567
Q ss_pred hhhhhcCccCCeeeCccCcCC
Q 048827 467 PSSISNLIELEMLDIQRNQIA 487 (576)
Q Consensus 467 ~~~l~~l~~L~~L~Ls~n~~~ 487 (576)
|..+..+++|+.+++++|...
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CcccccccCCCeeecCCCccc
Confidence 777777888888888887543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1e-23 Score=241.76 Aligned_cols=337 Identities=20% Similarity=0.232 Sum_probs=181.4
Q ss_pred ccccCCCCCCEEEccCCcC------CCCCCccCCCCC-CCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCc
Q 048827 156 PGLGHLSLLQTLSLGGNRL------KGPIPPSLGNLR-NLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPD 228 (576)
Q Consensus 156 ~~l~~l~~L~~L~L~~~~~------~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 228 (576)
..|.++++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 3466777788777765432 223555565553 4777777777665 555555 4567777777777765 4566
Q ss_pred cccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCC
Q 048827 229 ALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPS 308 (576)
Q Consensus 229 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 308 (576)
.+..+++|+.|+++++.....+|. +..+++|+.|++.+|.....+|..+.++++|+.|++++|.....+|.. ..+++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCC
Confidence 667777777777777654445553 666777777777777655567777777777777777777655555542 15666
Q ss_pred CCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCC-------ccchhhhCCCCCC
Q 048827 309 LLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTD-------GISSFFTNMSSLQ 381 (576)
Q Consensus 309 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~ 381 (576)
|+.|++++|... ..+|.. ..+|+.|++.++.+. .+|....+++|++|.+.++.... ..+..+...++|+
T Consensus 706 L~~L~Lsgc~~L-~~~p~~--~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 706 LYRLNLSGCSRL-KSFPDI--STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCEEeCCCCCCc-cccccc--cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 777777666432 233322 125666666666554 33333344556655555432111 1111112234455
Q ss_pred eEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCC
Q 048827 382 NIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSN 460 (576)
Q Consensus 382 ~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n 460 (576)
.|++++|.....+|. +..+++|+.|++++|...+.+|... .. ++|+.|++++|.....+|.. ..+|+.|++++|
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L--~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n 856 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL--ESLESLDLSGCSRLRTFPDI--STNISDLNLSRT 856 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc--cccCEEECCCCCcccccccc--ccccCEeECCCC
Confidence 555555543333332 4445555555555544433344332 11 12555555554443333332 134455555555
Q ss_pred cCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCC
Q 048827 461 KITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVN 508 (576)
Q Consensus 461 ~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n 508 (576)
.++ .+|.++..+++|+.|++++|+....+|..+..+++|+.+++++|
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 444 34444555555555555544433344444444455555555544
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=5.9e-24 Score=200.13 Aligned_cols=393 Identities=20% Similarity=0.217 Sum_probs=199.7
Q ss_pred EEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccC-CcCCCCCCccCCCCCCCcEEEccC
Q 048827 117 VMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGG-NRLKGPIPPSLGNLRNLLVINLGK 195 (576)
Q Consensus 117 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~-~~~~~~~p~~l~~l~~L~~L~l~~ 195 (576)
.++|.. |.++..-+.+|+.+++||.|||+.|.|+.+-|+.|.++.+|..|-+.+ |+|+......|+++..|+.|.+.-
T Consensus 71 eirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 71 EIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred EEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 344444 555544445666666666666666666655566666666655554444 556533334456666666666666
Q ss_pred CcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccc------------cCchhhcCCCCCCeE
Q 048827 196 NSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSG------------KFPISICGLANLQDL 263 (576)
Q Consensus 196 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~l~~L~~L 263 (576)
|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+-. ..|..++...-..-.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 66655555566666666666666665552222255556666666665554210 111122222222222
Q ss_pred EeecccCcCCChhhhcC-CCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCc
Q 048827 264 SLSHNQLTGTIPEQIGG-LRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCK 342 (576)
Q Consensus 264 ~L~~~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 342 (576)
.+.+.++...-+..|.. +..+..=-.+.+......|...+..+++|+.|++++|.++...-..+.+...+++|.+..|+
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 23333332222222211 11111111222334455566667778888888888887773222223333366666666666
Q ss_pred CccCCC-CCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeC-----------------CCCCCCCCCC
Q 048827 343 LRGALP-KFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDV-----------------SEIRFPDGLA 404 (576)
Q Consensus 343 ~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-----------------~~~~~~~~L~ 404 (576)
+...-. .|.++..|+.|+|.+|+|+...|..|..+.+|..|++-.|++.... +.-..+..++
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~ 389 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVR 389 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhc
Confidence 543222 2445566666666666666666666666666666666665543111 1111222333
Q ss_pred EEEccCCcCcccc---chhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeC
Q 048827 405 SIDLHSNQITGSL---SSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDI 481 (576)
Q Consensus 405 ~L~ls~n~~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 481 (576)
.+.+++..+...- |+.... ....+.-..++.+.++.=..|+....+|..+ ...-++|++
T Consensus 390 ~~~~~dv~~~~~~c~~~ee~~~----------------~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl 451 (498)
T KOG4237|consen 390 QIPISDVAFGDFRCGGPEELGC----------------LTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYL 451 (498)
T ss_pred cccchhccccccccCCccccCC----------------CCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhc
Confidence 3333333222110 000000 0000001223334333222223222444433 234567888
Q ss_pred ccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCC
Q 048827 482 QRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRAN 532 (576)
Q Consensus 482 s~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 532 (576)
.+|.++ .+|.. .+.+| .+++++|+++.---..|.++++|.+|.+++|
T Consensus 452 ~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 452 DGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 888887 66655 55677 8888888888544556788888888888876
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.3e-20 Score=197.23 Aligned_cols=263 Identities=26% Similarity=0.345 Sum_probs=148.3
Q ss_pred CCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEc
Q 048827 210 LSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKL 289 (576)
Q Consensus 210 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 289 (576)
.+-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|.++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34677888888887 5677664 47888888888887 4554 2477888888888877 44532 356777777
Q ss_pred cCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCc
Q 048827 290 SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDG 369 (576)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 369 (576)
++|.+.. +|. ....|+.|++++|.++ .+|.. .++|+.|++++|.+.+. |. .+.+|+.|++++|.+++
T Consensus 270 s~N~L~~-Lp~----lp~~L~~L~Ls~N~Lt--~LP~~--p~~L~~LdLS~N~L~~L-p~--lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPA----LPSGLCKLWIFGNQLT--SLPVL--PPGLQELSVSDNQLASL-PA--LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhh----chhhcCEEECcCCccc--ccccc--ccccceeECCCCccccC-CC--CcccccccccccCcccc-
Confidence 7776542 221 2245666666666665 33331 12455555555554432 21 11344445555554443
Q ss_pred cchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCC
Q 048827 370 ISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEG 449 (576)
Q Consensus 370 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 449 (576)
+| . .+.+|+.|++++|+++.. |... ..|+.|++++|.+.. +|.. .
T Consensus 337 LP------------------------~--lp~~Lq~LdLS~N~Ls~L-P~lp-----~~L~~L~Ls~N~L~~-LP~l--~ 381 (788)
T PRK15387 337 LP------------------------T--LPSGLQELSVSDNQLASL-PTLP-----SELYKLWAYNNRLTS-LPAL--P 381 (788)
T ss_pred cc------------------------c--cccccceEecCCCccCCC-CCCC-----cccceehhhcccccc-Cccc--c
Confidence 22 1 123455555555554432 2111 115555555555552 3332 1
Q ss_pred CCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEc
Q 048827 450 LSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANF 529 (576)
Q Consensus 450 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 529 (576)
.+|+.|++++|++++ +|.. .++|+.|++++|.+. .+|.. +.+|+.|++++|+++ .+|..+.++++|+.+++
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 356666666666653 3332 245666666666666 35532 235666666666666 56666666666777777
Q ss_pred cCCcceecCCC
Q 048827 530 RANRLCGEIPQ 540 (576)
Q Consensus 530 ~~n~l~g~iP~ 540 (576)
++|+++|.+|.
T Consensus 453 s~N~Ls~~~~~ 463 (788)
T PRK15387 453 EGNPLSERTLQ 463 (788)
T ss_pred CCCCCCchHHH
Confidence 77777666555
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=9.5e-23 Score=192.04 Aligned_cols=375 Identities=22% Similarity=0.267 Sum_probs=214.3
Q ss_pred CCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccC-CcccccCcccccCCCCCCEEE
Q 048827 138 TRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGK-NSVSGPIPPTFISFLSLQSLD 216 (576)
Q Consensus 138 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~ 216 (576)
+.-..++|..|.|+...|.+|+.+++||+|||++|.|+.+.|.+|.++++|..|-+.+ |+|+......|.++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4567889999999966667899999999999999999999999999999998888877 888866667899999999999
Q ss_pred cccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCcc
Q 048827 217 FSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQI 296 (576)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 296 (576)
+.-|++.....++|..+++|..|.+.+|.+....-..|..+..++.+.+..|.+... .+++.+.......
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~~~a~~----- 216 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLADDLAMN----- 216 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----cccchhhhHHhhc-----
Confidence 999999988888999999999999999988843334788888999998888874321 1111111100000
Q ss_pred ccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEE---EccCCcCccCCCC--CCCCCCccEEEccCCcCCCccc
Q 048827 297 RLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNV---NLAGCKLRGALPK--FTRPDSLSSIDLSNNLLTDGIS 371 (576)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~ 371 (576)
+. ..++++......+.+.++....-..+.. .++.+ -.+.|...+..|. |..+++|+.|++++|+++++-+
T Consensus 217 --~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 217 --PI-ETSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred --hh-hcccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 00 1111111111111111111000000000 00000 0011111111121 3334555555555555555555
Q ss_pred hhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcc---------
Q 048827 372 SFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSG--------- 441 (576)
Q Consensus 372 ~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--------- 441 (576)
.+|.+...+++|.|..|++...... +..+..|+.|++++|+++...|..+..... |.+|++-.|++.-
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~--l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS--LSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce--eeeeehccCcccCccchHHHHH
Confidence 5555555555555555554432222 444555555555555555544444444333 4444444443321
Q ss_pred --------cCCCCCCCCCCcEEEccCCcCCc---cChhhh---------hcCccCCeeeCccCcCCccCcccccCCCCCC
Q 048827 442 --------EIPEFTEGLSLKVLNIGSNKITG---HIPSSI---------SNLIELEMLDIQRNQIAGTIPTSLGLLSKLQ 501 (576)
Q Consensus 442 --------~~~~~~~~~~L~~L~L~~n~l~~---~~~~~l---------~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~ 501 (576)
..|.......++.+.+++..+.. ..|+.. ..++-+.+..=-.|.....+|..+. ..-.
T Consensus 370 Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~t 447 (498)
T KOG4237|consen 370 WLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVT 447 (498)
T ss_pred HHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhH
Confidence 11223333345566666554321 122221 1233333332222333336665443 4667
Q ss_pred EEeCCCCcCcccccccccCCCCCCEEEccCCcce
Q 048827 502 WLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 502 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
.|++.+|.++ .+|.. .+.+| .+|+++|+++
T Consensus 448 elyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 448 ELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred HHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 8889999988 67765 56777 8999999887
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=2.7e-19 Score=191.12 Aligned_cols=265 Identities=26% Similarity=0.404 Sum_probs=178.6
Q ss_pred CCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEe
Q 048827 186 RNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSL 265 (576)
Q Consensus 186 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 265 (576)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 45678999999998 6777665 489999999999984 554 3689999999999998 55643 468999999
Q ss_pred ecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCcc
Q 048827 266 SHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRG 345 (576)
Q Consensus 266 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 345 (576)
.+|.+. .+|.. .++|+.|++++|.+.. +|. ..++|++|++++|.+. .+|.. ..+|+.|++.+|.+.+
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~----~p~~L~~LdLS~N~L~--~Lp~l--p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLA--SLPAL--PSELCKLWAYNNQLTS 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCcccc-ccc----cccccceeECCCCccc--cCCCC--cccccccccccCcccc
Confidence 999987 45543 3678899999998764 332 3578999999999987 45542 2378899999999875
Q ss_pred CCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhc
Q 048827 346 ALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRT 425 (576)
Q Consensus 346 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~ 425 (576)
+|.+ +.+|++|++++|++++ +|.. .++|+.|++++|.+.. ++.. +.+|+.|++++|++.+
T Consensus 337 -LP~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l--~~~L~~LdLs~N~Lt~---------- 396 (788)
T PRK15387 337 -LPTL--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL--PSGLKELIVSGNRLTS---------- 396 (788)
T ss_pred -cccc--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc--ccccceEEecCCcccC----------
Confidence 4432 2689999999999886 3432 3467777888877763 3321 2345555555555543
Q ss_pred cCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeC
Q 048827 426 SSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDV 505 (576)
Q Consensus 426 ~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L 505 (576)
+|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|
T Consensus 397 -----------------LP~l--~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 397 -----------------LPVL--PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred -----------------CCCc--ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 2221 1245555555555542 3322 224555666666655 45555556666666666
Q ss_pred CCCcCcccccccc
Q 048827 506 SVNSLTGKIPTSL 518 (576)
Q Consensus 506 ~~n~l~~~~p~~l 518 (576)
++|++++..|..+
T Consensus 453 s~N~Ls~~~~~~L 465 (788)
T PRK15387 453 EGNPLSERTLQAL 465 (788)
T ss_pred CCCCCCchHHHHH
Confidence 6666665555444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=2.2e-17 Score=177.78 Aligned_cols=118 Identities=24% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEee
Q 048827 187 NLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLS 266 (576)
Q Consensus 187 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 266 (576)
+...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4567888877776 4555442 46788888888777 4555443 47788888887776 4555443 367777777
Q ss_pred cccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 267 HNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 267 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
+|.+. .+|..+. .+|+.|+++.|.+.. +|.. -.++|+.|++++|.++
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~---l~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPEN---LPEELRYLSVYDNSIR 296 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-cccc---cCCCCcEEECCCCccc
Confidence 77776 4554442 356666666665542 2321 1134555555555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=6.2e-17 Score=174.30 Aligned_cols=246 Identities=22% Similarity=0.368 Sum_probs=154.0
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEc
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDL 241 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 241 (576)
.+...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 46788999999988 6777664 58999999999998 5665543 58999999999988 5666553 57999999
Q ss_pred cCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCC
Q 048827 242 SNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSL 321 (576)
Q Consensus 242 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 321 (576)
++|.+. .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+.. +|.. -.+.|+.|++++|.++
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~---lp~sL~~L~Ls~N~Lt- 317 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAH---LPSGITHLNVQSNSLT- 317 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Cccc---chhhHHHHHhcCCccc-
Confidence 999998 6777664 58999999999998 5676553 589999999998764 2321 1235666666666655
Q ss_pred CCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCC
Q 048827 322 GTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPD 401 (576)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 401 (576)
.+|... .++|+.|++++|.+++ +|..+. ++|+.|++++|++......+ ++
T Consensus 318 -~LP~~l------------------------~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~ 367 (754)
T PRK15370 318 -ALPETL------------------------PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL--PP 367 (754)
T ss_pred -cCCccc------------------------cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh--cC
Confidence 222211 1345555555555544 333222 45555555555554211111 24
Q ss_pred CCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-----CCCCCCCcEEEccCCcCC
Q 048827 402 GLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-----FTEGLSLKVLNIGSNKIT 463 (576)
Q Consensus 402 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~~~L~~L~L~~n~l~ 463 (576)
+|+.|++++|+++.. |..+.. .|+.|++++|++.. +|. ...++.+..|++.+|+++
T Consensus 368 ~L~~LdLs~N~Lt~L-P~~l~~----sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 368 TITTLDVSRNALTNL-PENLPA----ALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCEEECCCCcCCCC-CHhHHH----HHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 556666666655532 222211 15566666665552 222 222345555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=6.9e-18 Score=168.64 Aligned_cols=106 Identities=27% Similarity=0.345 Sum_probs=58.7
Q ss_pred cCEEEccCCcCcccCC----C-CCCCCCCcEEEccCCcCCccChhhhhc-----CccCCeeeCccCcCCc----cCcccc
Q 048827 429 LEALDVSGNHFSGEIP----E-FTEGLSLKVLNIGSNKITGHIPSSISN-----LIELEMLDIQRNQIAG----TIPTSL 494 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~----~-~~~~~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~~~~----~~p~~l 494 (576)
|++|++++|.+.+... . +..+++|+.|++++|.+++.....+.. .+.|++|++++|.+++ .+...+
T Consensus 195 L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 274 (319)
T cd00116 195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL 274 (319)
T ss_pred CCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH
Confidence 5555555554432211 1 344566777777777666432222221 2567777777777652 233445
Q ss_pred cCCCCCCEEeCCCCcCccc----ccccccCC-CCCCEEEccCCcc
Q 048827 495 GLLSKLQWLDVSVNSLTGK----IPTSLLGI-RGLRHANFRANRL 534 (576)
Q Consensus 495 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~l~~n~l 534 (576)
..+++|+++++++|.++.. +...+... +.|+.+++.+|++
T Consensus 275 ~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 275 AEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred hcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 5556777777777777743 33334444 5677777776654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=3.9e-18 Score=170.46 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=59.3
Q ss_pred CCCCCCCcEEEccCCcccccCcccccCCCC---CCEEEcccCCCcc----cCCccccCC-CCCCEEEccCCccccc----
Q 048827 182 LGNLRNLLVINLGKNSVSGPIPPTFISFLS---LQSLDFSFNLLSG----FIPDALVRS-QNLTYIDLSNNQFSGK---- 249 (576)
Q Consensus 182 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~~~~~---- 249 (576)
+.++++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 334444555555444444333333333322 5555555554442 112223333 4555555555554421
Q ss_pred CchhhcCCCCCCeEEeecccCcCC----ChhhhcCCCCCcEEEccCCcCccccCc---cccCCCCCCCEEECcCCCCC
Q 048827 250 FPISICGLANLQDLSLSHNQLTGT----IPEQIGGLRSLNSLKLSEMDSQIRLPI---ILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 250 ~~~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~ 320 (576)
++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+...... ..+..+++|++|++++|.++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 122333444555555555555421 122233334555555555544322110 12234455555555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=4.5e-18 Score=142.65 Aligned_cols=137 Identities=28% Similarity=0.521 Sum_probs=60.9
Q ss_pred cccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCccc-ccCcccccCC
Q 048827 131 PESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVS-GPIPPTFISF 209 (576)
Q Consensus 131 ~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l 209 (576)
|..+..+.+|++|++.+|++. .+|.+++.+++|++|+++-|++. .+|..|+.++.|+.||+.+|.+. ..+|..|-.+
T Consensus 49 ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHH
Confidence 334444444444444444444 34444444444444444444444 44444444444444444444433 1233444444
Q ss_pred CCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCc
Q 048827 210 LSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 210 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~ 271 (576)
+.|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.++.|++|.+.+|+++
T Consensus 127 ~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 127 TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 44444444444443 33444444444444444444443 34444444444444444444444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.9e-17 Score=138.90 Aligned_cols=159 Identities=32% Similarity=0.569 Sum_probs=142.6
Q ss_pred CCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEE
Q 048827 136 NLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSL 215 (576)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 215 (576)
.+.+.+.|.++.|.++ .+|..+..+.+|++|++.+|++. .+|..++.+++|++|+++-|++. ..|.+|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 5677888899999999 78889999999999999999999 89999999999999999999987 889999999999999
Q ss_pred EcccCCCc-ccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcC
Q 048827 216 DFSFNLLS-GFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294 (576)
Q Consensus 216 ~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 294 (576)
++.+|.+. ..+|..|..+..|+-|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++.+..|++|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 99999885 457888888999999999999998 88899999999999999999987 7899999999999999999887
Q ss_pred ccccC
Q 048827 295 QIRLP 299 (576)
Q Consensus 295 ~~~~~ 299 (576)
+...|
T Consensus 186 ~vlpp 190 (264)
T KOG0617|consen 186 TVLPP 190 (264)
T ss_pred eecCh
Confidence 65443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=2.1e-13 Score=146.62 Aligned_cols=151 Identities=32% Similarity=0.540 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC--CcCcEEcCCC--C--CCEEEEEcCCCCcCCCCceeeecCccc
Q 048827 36 ICFEADRLVLQEFKAKILKDTTEILASWMGKDCCGG--DWEGVVCNPA--T--GRVTGLALQRPDRELGMYMIGTLPAAL 109 (576)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~c~~--~w~~v~c~~~--~--~~v~~l~l~~~~~~~~~~~~~~~~~~l 109 (576)
...+.|..+|..+|.++. ++. ..+|.+..|+.. .|.|+.|... . .+|+.|+|+++. +.|.+|..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~------L~g~ip~~i 438 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG------LRGFIPNDI 438 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Ccc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCC------ccccCCHHH
Confidence 455678999999999885 322 248987665422 6999999521 1 246677776655 555555555
Q ss_pred cCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCC-CCC
Q 048827 110 GNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNL-RNL 188 (576)
Q Consensus 110 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l-~~L 188 (576)
..+++|++|+|++ +.+.|.+|..++.+++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+... .++
T Consensus 439 ~~L~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 439 SKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred hCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 5555666665555 44555555555555555555555555555555555555555555555555555555544432 233
Q ss_pred cEEEccCC
Q 048827 189 LVINLGKN 196 (576)
Q Consensus 189 ~~L~l~~n 196 (576)
..+++.+|
T Consensus 518 ~~l~~~~N 525 (623)
T PLN03150 518 ASFNFTDN 525 (623)
T ss_pred ceEEecCC
Confidence 34444443
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=1.4e-12 Score=140.36 Aligned_cols=117 Identities=35% Similarity=0.593 Sum_probs=107.4
Q ss_pred CCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEcc
Q 048827 451 SLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFR 530 (576)
Q Consensus 451 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 530 (576)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+.++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCCCC--CCCCCCCcccccCCCCCCCCC-CCCCC
Q 048827 531 ANRLCGEIPQG--RPYSIFPGSAYAHNLCLCGKP-LPPCR 567 (576)
Q Consensus 531 ~n~l~g~iP~~--~~~~~l~~~~~~~n~~l~~~~-~~~~~ 567 (576)
+|++.|.+|.. .....+..+++.+|+.+||.| ++.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999987 334566788999999999876 46674
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=3.9e-13 Score=133.40 Aligned_cols=192 Identities=25% Similarity=0.304 Sum_probs=164.0
Q ss_pred CCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEE
Q 048827 354 DSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALD 433 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~ 433 (576)
.--...|++.|++.. +|..+..+-.|+.+.++.|.+......+..+..|+.++++.|++. ..|..++..+ |+.|.
T Consensus 75 tdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp---Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP---LKVLI 149 (722)
T ss_pred cchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc---ceeEE
Confidence 445567888888876 777788888899999999998877777889999999999999887 4455555555 99999
Q ss_pred ccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCccc
Q 048827 434 VSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGK 513 (576)
Q Consensus 434 l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~ 513 (576)
+++|.++...++++....|..|+.+.|.+. .+|..++++.+|+.|++..|++. .+|+.+. .-.|.+||++.|+++ .
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-e
Confidence 999999865555888889999999999998 68888999999999999999998 6777777 447899999999999 8
Q ss_pred ccccccCCCCCCEEEccCCcceecCCCC----CCCCCCCcccccCC
Q 048827 514 IPTSLLGIRGLRHANFRANRLCGEIPQG----RPYSIFPGSAYAHN 555 (576)
Q Consensus 514 ~p~~l~~l~~L~~L~l~~n~l~g~iP~~----~~~~~l~~~~~~~n 555 (576)
+|..|.+|..|++|-|.+|++. ..|.+ +.+.-|+.+++..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 9999999999999999999998 67776 88889999998876
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=2.8e-11 Score=132.96 Aligned_cols=106 Identities=25% Similarity=0.376 Sum_probs=62.7
Q ss_pred CCCEEecCCCCC-CccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEE
Q 048827 114 FLEVMVISGMKH-ITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVIN 192 (576)
Q Consensus 114 ~L~~L~L~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 192 (576)
.|++|-+.++.. +....+..|..++.|++||+++|.--+.+|..++.+-+||+|+++++.+. .+|..+.+++.|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 466665555221 22222334556666666666666554466666666666666666666666 6666666666666666
Q ss_pred ccCCcccccCcccccCCCCCCEEEcccC
Q 048827 193 LGKNSVSGPIPPTFISFLSLQSLDFSFN 220 (576)
Q Consensus 193 l~~n~~~~~~~~~l~~l~~L~~L~l~~n 220 (576)
+..+.....+|.....+.+|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 6665544444555555666666666543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.4e-12 Score=121.17 Aligned_cols=201 Identities=21% Similarity=0.252 Sum_probs=106.9
Q ss_pred CccEEEccCCcCccCCC--CCCCCCCccEEEccCCcCCCc--cchhhhCCCCCCeEEccCCcceeeCCC--CCCCCCCCE
Q 048827 332 PLSNVNLAGCKLRGALP--KFTRPDSLSSIDLSNNLLTDG--ISSFFTNMSSLQNIKLSNNQLKFDVSE--IRFPDGLAS 405 (576)
Q Consensus 332 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~~L~~ 405 (576)
+|+.+.+.++....... -...+++++.|||+.|-+... +......+|+|+.|+++.|.+.....+ -..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 67777787776653332 234457788888888766542 223345677888888887777544433 334566677
Q ss_pred EEccCCcCcc-ccchhhhhhccCCcCEEEccCCcCcc-cCCCCCCCCCCcEEEccCCcCCccC-hhhhhcCccCCeeeCc
Q 048827 406 IDLHSNQITG-SLSSIINNRTSSFLEALDVSGNHFSG-EIPEFTEGLSLKVLNIGSNKITGHI-PSSISNLIELEMLDIQ 482 (576)
Q Consensus 406 L~ls~n~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls 482 (576)
|.++.|.++. .+....... +.|+.|++.+|.... ......-+..|++|+|++|++.... ....+.++.|+.|+++
T Consensus 202 L~l~~CGls~k~V~~~~~~f--Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTF--PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred EEeccCCCCHHHHHHHHHhC--CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 7777776652 111122222 336666666663211 1111333445666666666554221 1234556666666666
Q ss_pred cCcCCcc-Cccc-----ccCCCCCCEEeCCCCcCccccc--ccccCCCCCCEEEccCCcce
Q 048827 483 RNQIAGT-IPTS-----LGLLSKLQWLDVSVNSLTGKIP--TSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 483 ~n~~~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~ 535 (576)
.|.+... +|.. ...+++|++|++..|++.+ .+ ..+..+++|+.|.+..|.+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccc
Confidence 6655431 2221 2344566666666666642 11 22334555555665555554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.8e-12 Score=128.64 Aligned_cols=181 Identities=30% Similarity=0.464 Sum_probs=145.7
Q ss_pred eeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCcc
Q 048827 102 IGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPS 181 (576)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~ 181 (576)
..++|..+..|..|+.+.+.. +.+ ..+|..+..+..|++|+++.|+++ .+|..++.|+ |+.|-+++|+++ .+|..
T Consensus 87 ~~elp~~~~~f~~Le~liLy~-n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ 161 (722)
T KOG0532|consen 87 FSELPEEACAFVSLESLILYH-NCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEE 161 (722)
T ss_pred cccCchHHHHHHHHHHHHHHh-ccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcc
Confidence 457888888888888888887 444 367888999999999999999988 7888888776 889999999988 78888
Q ss_pred CCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCC
Q 048827 182 LGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQ 261 (576)
Q Consensus 182 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 261 (576)
++.+.+|.+|+.+.|.+. .+|..++.+.+|+.|++..|++. .+|+.+. .-.|..||++.|++. .+|..|.+|+.|+
T Consensus 162 ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhhe
Confidence 998899999999999887 67888899999999999999887 5666666 446888999999988 7888899999999
Q ss_pred eEEeecccCcCCChhhhcC---CCCCcEEEccCC
Q 048827 262 DLSLSHNQLTGTIPEQIGG---LRSLNSLKLSEM 292 (576)
Q Consensus 262 ~L~L~~~~~~~~~~~~l~~---l~~L~~L~L~~~ 292 (576)
+|.|.+|.+. ..|..+.. ..=-++|+...|
T Consensus 238 ~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 238 VLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 9999999887 44544432 223455555555
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=2.1e-10 Score=118.02 Aligned_cols=180 Identities=33% Similarity=0.504 Sum_probs=81.8
Q ss_pred CCCCCCEEEccCCcCCCCCCccCCCCC-CCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCE
Q 048827 160 HLSLLQTLSLGGNRLKGPIPPSLGNLR-NLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTY 238 (576)
Q Consensus 160 ~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 238 (576)
.++.++.|++.++.++ .++......+ +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .++......++|+.
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 3344555555555544 3333344442 4555555555444 23334445555555555555544 22332334445555
Q ss_pred EEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCC
Q 048827 239 IDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNN 318 (576)
Q Consensus 239 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (576)
|++++|.+. .+|........|+++.+.+|... ..+..+..+.++..+.+..|..... +. ....++.+++|++++|.
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~-~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE-SIGNLSNLETLDLSNNQ 266 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc-hhccccccceecccccc
Confidence 555555554 34443333344555555555322 2333344444455554444443321 11 33444555555555555
Q ss_pred CCCCCCCCcCCCCCccEEEccCCcCccCCC
Q 048827 319 LSLGTVPNWIKDRPLSNVNLAGCKLRGALP 348 (576)
Q Consensus 319 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 348 (576)
++ .++......+++.|+++++.+....+
T Consensus 267 i~--~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 267 IS--SISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cc--ccccccccCccCEEeccCccccccch
Confidence 54 22222233355666666555554443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.3e-11 Score=115.54 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCCCCCEEEccCCCCCcCCC--ccccCCCCCCEEEccCCcCCCC--CCccCCCCCCCcEEEccCCccc
Q 048827 136 NLTRLTQLILEDNSLEGSIP--PGLGHLSLLQTLSLGGNRLKGP--IPPSLGNLRNLLVINLGKNSVS 199 (576)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~L~~~~~~~~--~p~~l~~l~~L~~L~l~~n~~~ 199 (576)
++++|+...|.++.+. ..+ .....|++++.||+++|-+..- +-.-...+++|+.|+++.|++.
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 4555555555555544 222 1344455555555555544321 1111234555555555555543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=3e-10 Score=100.29 Aligned_cols=124 Identities=27% Similarity=0.364 Sum_probs=41.2
Q ss_pred CCCCCCEEEccCCCCCcCCCcccc-CCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccc-cCCCCCC
Q 048827 136 NLTRLTQLILEDNSLEGSIPPGLG-HLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTF-ISFLSLQ 213 (576)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~ 213 (576)
+..++++|+|++|.++ .+ +.++ .+.+|++|++++|.++. + +.+..+++|++|++++|.++.. ...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 4456778888888777 33 3455 46778888888888773 3 3567777888888888877743 2233 4577788
Q ss_pred EEEcccCCCccc-CCccccCCCCCCEEEccCCcccccCc---hhhcCCCCCCeEE
Q 048827 214 SLDFSFNLLSGF-IPDALVRSQNLTYIDLSNNQFSGKFP---ISICGLANLQDLS 264 (576)
Q Consensus 214 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~ 264 (576)
+|++++|++... ....+..+++|++|++.+|+++..-- ..+..+|+|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 888877777532 12445667777777777777663311 1234556666654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=3.1e-10 Score=116.77 Aligned_cols=197 Identities=31% Similarity=0.449 Sum_probs=98.3
Q ss_pred EEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCC-CccEEEccCCcCCCccchhhhCCCCCCeEEccCCc
Q 048827 311 SIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPD-SLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQ 389 (576)
Q Consensus 311 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 389 (576)
.++...+.+. ...........++.+++.++.+....+.....+ +|+.|++++|++.. ++..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhhccccccccccCCch
Confidence 4555555542 222222233456666666666664433333332 66666666666655 33445566666666666666
Q ss_pred ceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhh
Q 048827 390 LKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSS 469 (576)
Q Consensus 390 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 469 (576)
+..........+.|+.|++++|++....+.. ..... |+++.+++|.+...+..+..+.++..+.+.+|++. ..+..
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~~~~--L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-ELLSA--LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhh-hhhhh--hhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 6533333335556666666666655333321 11111 55555555543333333444555555555555554 22444
Q ss_pred hhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCccccc
Q 048827 470 ISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIP 515 (576)
Q Consensus 470 l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 515 (576)
++.+++++.|++++|.++ .++. ++...+++.|++++|.++...|
T Consensus 251 ~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 455555555555555555 2222 4555555555555555554333
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=6.6e-11 Score=111.28 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCccEEEccCCcCCCc----cchhhhCCCCCCeEEccCCcceeeCCC-----CCCCCCCCEEEccCCcCc
Q 048827 354 DSLSSIDLSNNLLTDG----ISSFFTNMSSLQNIKLSNNQLKFDVSE-----IRFPDGLASIDLHSNQIT 414 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~-----~~~~~~L~~L~ls~n~~~ 414 (576)
+.|+.+.++.|.|... +...|..+++|+.|+|++|.++..... +..+++|+.|++++|.+.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 4555555555554321 223445566666666666655422111 444445555555555544
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=4.3e-10 Score=123.82 Aligned_cols=261 Identities=20% Similarity=0.277 Sum_probs=141.1
Q ss_pred CCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCc--CCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCE
Q 048827 137 LTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNR--LKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQS 214 (576)
Q Consensus 137 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~--~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 214 (576)
....|.+.+-+|.+. .++.... .++|++|-+..|. +.......|..++.|++||+++|.-.+.+|..++++-+|++
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 355667777666665 4444332 3467777777775 34233333666777888888777666677777777777887
Q ss_pred EEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCc--CCChhhhcCCCCCcEEEccCC
Q 048827 215 LDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT--GTIPEQIGGLRSLNSLKLSEM 292 (576)
Q Consensus 215 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~--~~~~~~l~~l~~L~~L~L~~~ 292 (576)
|+++++.+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+...... ...-..+..+.+|+.+.....
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 777777776 67777777777777777776655455555566777777777655421 111222333334443333221
Q ss_pred cCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccch
Q 048827 293 DSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISS 372 (576)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 372 (576)
.. .... .+...+.|.. ..+.+.+.++...........+.+|+.|.+.++.+.+....
T Consensus 679 s~-~~~e--~l~~~~~L~~--------------------~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 679 SV-LLLE--DLLGMTRLRS--------------------LLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred hh-HhHh--hhhhhHHHHH--------------------HhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcc
Confidence 11 0000 0011111110 11122222233333344445557777777777766543322
Q ss_pred hhhC------CCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhh
Q 048827 373 FFTN------MSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINN 423 (576)
Q Consensus 373 ~~~~------l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 423 (576)
+... ++++..+.+.++............++|+.|.+..|.....+......
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHH
Confidence 2111 23333444444433333333456778888888877776655544443
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=6.1e-11 Score=111.50 Aligned_cols=134 Identities=21% Similarity=0.226 Sum_probs=60.8
Q ss_pred CCCCEEEcccCCCccc----CCccccCCCCCCEEEccCCcccccC----chhhcCCCCCCeEEeecccCcCC----Chhh
Q 048827 210 LSLQSLDFSFNLLSGF----IPDALVRSQNLTYIDLSNNQFSGKF----PISICGLANLQDLSLSHNQLTGT----IPEQ 277 (576)
Q Consensus 210 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~----~~~~ 277 (576)
++|+++....|++... +...|...+.|+.+.++.|.+.... ...+..+++|++|+|.+|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 3455555555544321 1223444455555555555443211 22344555555555555554422 2233
Q ss_pred hcCCCCCcEEEccCCcCccccCc----cccCCCCCCCEEECcCCCCCCCCCCC----cCCCCCccEEEccCCcC
Q 048827 278 IGGLRSLNSLKLSEMDSQIRLPI----ILGRGIPSLLSIDLSYNNLSLGTVPN----WIKDRPLSNVNLAGCKL 343 (576)
Q Consensus 278 l~~l~~L~~L~L~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~L~~L~l~~~~~ 343 (576)
+..+++|+.|++++|.+...-.. ......|.|+.+.+.+|.++...... ....+.|+.|++++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44455555555555544332111 12233556666666666554221110 11133666666666665
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=1.1e-09 Score=96.81 Aligned_cols=100 Identities=25% Similarity=0.312 Sum_probs=38.1
Q ss_pred cCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCcc-CcccccCCCCCCEEeCCC
Q 048827 429 LEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGT-IPTSLGLLSKLQWLDVSV 507 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~ 507 (576)
|+.|++++|.+. .++.+..++.|++|++++|.++...+.....+++|++|++++|+|.+. .-..+..+++|++|++.+
T Consensus 44 L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 44 LEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp --EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred CCEEECCCCCCc-cccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 555666666555 344455666777777777777743222223567777777777776542 114456677777777777
Q ss_pred CcCcccccc----cccCCCCCCEEEcc
Q 048827 508 NSLTGKIPT----SLLGIRGLRHANFR 530 (576)
Q Consensus 508 n~l~~~~p~----~l~~l~~L~~L~l~ 530 (576)
|+++.. +. .+..+|+|+.||-.
T Consensus 123 NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 123 NPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred Ccccch-hhHHHHHHHHcChhheeCCE
Confidence 777632 21 34556777777643
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=7e-10 Score=102.08 Aligned_cols=132 Identities=23% Similarity=0.228 Sum_probs=76.6
Q ss_pred CCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCe
Q 048827 183 GNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQD 262 (576)
Q Consensus 183 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 262 (576)
.....|+++|+++|.|+ .+.++..-.++++.|+++.|.+... +.+..+++|+.||+++|.++ .+..|-.++-++++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 33455666666666665 3444555556666666666666522 33556666666666666665 33334445556666
Q ss_pred EEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 263 LSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 263 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
|.+++|.+.. -..+..+-+|..|++++|++.........+.+|.|+++.+.+|.+.
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6666666541 1235555666666666666554444345566666666666666654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=6.7e-10 Score=102.23 Aligned_cols=59 Identities=32% Similarity=0.402 Sum_probs=27.7
Q ss_pred CCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCcc-CcccccCCCCCCEEeCCCCcCc
Q 048827 451 SLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGT-IPTSLGLLSKLQWLDVSVNSLT 511 (576)
Q Consensus 451 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~ 511 (576)
++++|.|+.|.+... ..++.+-+|..||+++|+|... -...+++++.|+.+.|.+|++.
T Consensus 353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 444455555444321 3344445555555555554321 1134455555555555555555
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.1e-08 Score=74.09 Aligned_cols=60 Identities=33% Similarity=0.480 Sum_probs=34.5
Q ss_pred cCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcc
Q 048827 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRL 534 (576)
Q Consensus 475 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 534 (576)
+|++|++++|++....+..|..+++|++|++++|+++...|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455566666655544445555566666666666666544445556666666666666553
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.6e-08 Score=73.18 Aligned_cols=61 Identities=38% Similarity=0.578 Sum_probs=45.5
Q ss_pred CCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcC
Q 048827 450 LSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSL 510 (576)
Q Consensus 450 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l 510 (576)
++|++|++++|+++...+..|.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777766667777777888888887777766666777777888888877764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.3e-09 Score=109.39 Aligned_cols=246 Identities=24% Similarity=0.218 Sum_probs=109.3
Q ss_pred CCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCC-cCCCCCccEEEccCCcCccCCCCCCCCCCccE
Q 048827 280 GLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPN-WIKDRPLSNVNLAGCKLRGALPKFTRPDSLSS 358 (576)
Q Consensus 280 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 358 (576)
.+..++.+.+..|.+.... ..+..+.+|+.+++.+|.+. .+.. .-.+.+|+.|++++|.+. .+..+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~--~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL--NHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhhhh--cccccccceeeeeccccchh--hcccchhhhhcchheeccccccc-cccchhhccchhh
Confidence 3445555556655544311 12455667777777777665 3333 222335555555555554 2223333344555
Q ss_pred EEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCC
Q 048827 359 IDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGN 437 (576)
Q Consensus 359 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n 437 (576)
|++++|.+... ..+..++.|+.+++++|.+...... ...+.+++.+++.+|.+...-....... +..+++..|
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~----l~~~~l~~n 218 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKK----LVLLSLLDN 218 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHH----HHHhhcccc
Confidence 55555555431 1223344555555555554422221 2444445555555554443222111110 222344444
Q ss_pred cCcccCCCCCCCCC--CcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCccc--
Q 048827 438 HFSGEIPEFTEGLS--LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGK-- 513 (576)
Q Consensus 438 ~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-- 513 (576)
.+... ..+..... |+.+++++|++. ..+..+..+..+..|++.+|.+... ..+.....+..+....+.+...
T Consensus 219 ~i~~~-~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 219 KISKL-EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred cceec-cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence 44321 11111222 555555555555 2223444555555555555555422 2233344444555555544421
Q ss_pred -cccc-ccCCCCCCEEEccCCcceecCCC
Q 048827 514 -IPTS-LLGIRGLRHANFRANRLCGEIPQ 540 (576)
Q Consensus 514 -~p~~-l~~l~~L~~L~l~~n~l~g~iP~ 540 (576)
.... ....+.++...+.+|+.....+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred hhccccccccccccccccccCcccccccc
Confidence 1111 33455566666666665554443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=4.7e-09 Score=108.23 Aligned_cols=129 Identities=29% Similarity=0.381 Sum_probs=73.1
Q ss_pred CCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEE
Q 048827 136 NLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSL 215 (576)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 215 (576)
.+..+..+.++.|.+. .+-..++.+++|++|++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 3445555556666555 223335566666666666666652 222255566666666666666543 234555556666
Q ss_pred EcccCCCcccCCccccCCCCCCEEEccCCcccccCc-hhhcCCCCCCeEEeecccCc
Q 048827 216 DFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFP-ISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~~~~~ 271 (576)
++.+|.++.. ..+..+++|+.+++++|.++..-+ . ...+.+++.+.+.+|.+.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 6666666532 334446666666666666653322 1 355666666666666654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.2e-09 Score=98.79 Aligned_cols=179 Identities=20% Similarity=0.205 Sum_probs=123.3
Q ss_pred CCCcEEEccCCccccc-CcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCc--hhhcCCCCCCe
Q 048827 186 RNLLVINLGKNSVSGP-IPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFP--ISICGLANLQD 262 (576)
Q Consensus 186 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~ 262 (576)
+.|++||++...++.. +-..++.+.+|+.|.+.++++.+.+...+.+..+|+.|+++.+....... ..+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588999998877633 23356788899999999999998888889999999999999875332222 23578899999
Q ss_pred EEeecccCcCCChhh-hcC-CCCCcEEEccCCcCcc--ccCccccCCCCCCCEEECcCC-CCCCCCCCCcCCCCCccEEE
Q 048827 263 LSLSHNQLTGTIPEQ-IGG-LRSLNSLKLSEMDSQI--RLPIILGRGIPSLLSIDLSYN-NLSLGTVPNWIKDRPLSNVN 337 (576)
Q Consensus 263 L~L~~~~~~~~~~~~-l~~-l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~ 337 (576)
|+|++|.+....... +.+ -++|..|+++++.-.- .........+|+|.+||++.+ .++.+-+..++..+.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999875432211 222 3678889998875221 111124467999999999987 44444455566677888888
Q ss_pred ccCCcCc--cCCCCCCCCCCccEEEccCC
Q 048827 338 LAGCKLR--GALPKFTRPDSLSSIDLSNN 364 (576)
Q Consensus 338 l~~~~~~--~~~~~~~~~~~L~~L~Ls~n 364 (576)
++.|... ..+-.+...|+|.+|++.++
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8888642 11122444588888888775
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=4e-09 Score=108.13 Aligned_cols=125 Identities=22% Similarity=0.202 Sum_probs=92.2
Q ss_pred cCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcc-cccCCCCCCEEeCCC
Q 048827 429 LEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPT-SLGLLSKLQWLDVSV 507 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~-~l~~l~~L~~L~L~~ 507 (576)
|...+.+.|.+.-.-..+.-++.|+.|+|++|+++.. +.+..|+.|++|||+.|.+. .+|. ....+. |..|.+++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence 6777777777763323366677889999999999843 47888999999999999887 5553 233443 89999999
Q ss_pred CcCcccccccccCCCCCCEEEccCCcceecCCCC--CCCCCCCcccccCCCCCC
Q 048827 508 NSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG--RPYSIFPGSAYAHNLCLC 559 (576)
Q Consensus 508 n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~--~~~~~l~~~~~~~n~~l~ 559 (576)
|.++. + -.+.++.+|+.||+++|-+.+.---. .....|+.+.+.|||..|
T Consensus 242 N~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 98883 2 35778899999999999887433222 355677888899999777
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.9e-09 Score=94.92 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCc-ceeeCCC--CCCCCCCCEEEccCCcCccccchhhhhhccCCc
Q 048827 353 PDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQ-LKFDVSE--IRFPDGLASIDLHSNQITGSLSSIINNRTSSFL 429 (576)
Q Consensus 353 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L 429 (576)
+..|+.|.|.++++.+.+...+....+|+.|+++.+. ++..... +..++.|..|+++-|......-...-....++|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 4666777777777777666667777777777777653 2211111 556666777777766655443222222222346
Q ss_pred CEEEccCCcCcccCCC----CCCCCCCcEEEccCCc-CCccChhhhhcCccCCeeeCccCcCCccCcccc---cCCCCCC
Q 048827 430 EALDVSGNHFSGEIPE----FTEGLSLKVLNIGSNK-ITGHIPSSISNLIELEMLDIQRNQIAGTIPTSL---GLLSKLQ 501 (576)
Q Consensus 430 ~~L~l~~n~~~~~~~~----~~~~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l---~~l~~L~ 501 (576)
+.|+++|+.-.-.... ...+++|..|||++|. ++......|-.++.|++|.++.|.. .+|+.+ ...++|.
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceE
Confidence 6666666532211111 3445566666666543 2222233444555556666655543 233322 2344555
Q ss_pred EEeCCCC
Q 048827 502 WLDVSVN 508 (576)
Q Consensus 502 ~L~L~~n 508 (576)
+|++.++
T Consensus 367 yLdv~g~ 373 (419)
T KOG2120|consen 367 YLDVFGC 373 (419)
T ss_pred EEEeccc
Confidence 5555444
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=1.4e-07 Score=87.15 Aligned_cols=181 Identities=18% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCCEEEccCCcccc--cCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCE
Q 048827 234 QNLTYIDLSNNQFSG--KFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLS 311 (576)
Q Consensus 234 ~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 311 (576)
+.++++|+.+|.+++ .+...+.++|.|+.|+|+.|++...+...-....+|+.|-|.+..+.-......+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 444555555554431 112223445555555555555442221110233455555555544433322334455666666
Q ss_pred EECcCCCCCCCCCCCc---CCCCCccEEEccCCcCccCCC--CCC-CCCCccEEEccCCcCCCc-cchhhhCCCCCCeEE
Q 048827 312 IDLSYNNLSLGTVPNW---IKDRPLSNVNLAGCKLRGALP--KFT-RPDSLSSIDLSNNLLTDG-ISSFFTNMSSLQNIK 384 (576)
Q Consensus 312 L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~--~~~-~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ 384 (576)
|.++.|.+....+.+- -..+.+++++...|....+.. ... ..|++..+.+..|.+.+. ....+..+|.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 6666663321111100 011234455555543321110 011 125555555555544331 112333445555555
Q ss_pred ccCCcceeeCC--CCCCCCCCCEEEccCCcCc
Q 048827 385 LSNNQLKFDVS--EIRFPDGLASIDLHSNQIT 414 (576)
Q Consensus 385 L~~n~~~~~~~--~~~~~~~L~~L~ls~n~~~ 414 (576)
|+.+.+..... .+..+++|..|.++++++.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 55555542221 2445555555555555544
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=7.7e-09 Score=106.09 Aligned_cols=125 Identities=31% Similarity=0.329 Sum_probs=55.6
Q ss_pred CCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCcc-ccCCCCCCEEEc
Q 048827 163 LLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDA-LVRSQNLTYIDL 241 (576)
Q Consensus 163 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l 241 (576)
.|.+-+++.|.+. .+..++.-++.|+.|+|+.|+++.. +.+..+++|++||+++|.+. .+|.. ...+ .|..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 3444444445444 3334444455555555555555422 24555555555555555544 22221 1112 2555555
Q ss_pred cCCcccccCchhhcCCCCCCeEEeecccCcCCC-hhhhcCCCCCcEEEccCCcC
Q 048827 242 SNNQFSGKFPISICGLANLQDLSLSHNQLTGTI-PEQIGGLRSLNSLKLSEMDS 294 (576)
Q Consensus 242 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~ 294 (576)
++|.++. -..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5554441 112444555555555555443211 11123344455555555543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=1.7e-07 Score=76.64 Aligned_cols=108 Identities=21% Similarity=0.350 Sum_probs=66.6
Q ss_pred cCEEEccCCcCcccCCC----CCCCCCCcEEEccCCcCCccChhhh-hcCccCCeeeCccCcCCccCcccccCCCCCCEE
Q 048827 429 LEALDVSGNHFSGEIPE----FTEGLSLKVLNIGSNKITGHIPSSI-SNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWL 503 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 503 (576)
+..++++.|++-- +++ +.....|+..+|++|.+.. .|+.| ...+.++.|++++|.++ .+|+.+..++.|+.|
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3445555554431 111 3334456666777776663 33333 33456777777777777 566667777777777
Q ss_pred eCCCCcCcccccccccCCCCCCEEEccCCcceecCCCC
Q 048827 504 DVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG 541 (576)
Q Consensus 504 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~ 541 (576)
+++.|++. ..|..+..+.+|-.|+..+|... +||.+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 77777777 55666666777777777777766 66665
No 49
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.14 E-value=3.6e-06 Score=55.61 Aligned_cols=39 Identities=38% Similarity=0.851 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCC---CCCCCCCcCcEEcC
Q 048827 39 EADRLVLQEFKAKILKDTTEILASWMG---KDCCGGDWEGVVCN 79 (576)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~~~~~~~w~~---~~~c~~~w~~v~c~ 79 (576)
++|+++|++||+++..++...+.+|.. .+|| .|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C--~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC--SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC--CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe--eeccEEeC
Confidence 579999999999998667789999983 6999 99999995
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=7.6e-07 Score=82.42 Aligned_cols=185 Identities=21% Similarity=0.161 Sum_probs=107.8
Q ss_pred CCCCCCEEEccCCCCCc--CCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCccccc-CcccccCCCCC
Q 048827 136 NLTRLTQLILEDNSLEG--SIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGP-IPPTFISFLSL 212 (576)
Q Consensus 136 ~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L 212 (576)
..++++.+||.+|.++. .+..-+.+++.|++|+++.|.+...+-..-....+|++|.+.+..+.-. ....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46788888888888763 2333456788888888888887743322113456888888887766522 23456677777
Q ss_pred CEEEcccCCCcccCC--cccc-CCCCCCEEEccCCcccc--cCchhhcCCCCCCeEEeecccCcCC-ChhhhcCCCCCcE
Q 048827 213 QSLDFSFNLLSGFIP--DALV-RSQNLTYIDLSNNQFSG--KFPISICGLANLQDLSLSHNQLTGT-IPEQIGGLRSLNS 286 (576)
Q Consensus 213 ~~L~l~~n~l~~~~~--~~l~-~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~ 286 (576)
+.|.++.|.+..... +... ..+.+++|+...|...- .......-++++..+.+..|.+... -...+..+|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 888777774321111 1111 12355566665554320 0000112346677777777765432 1233445566667
Q ss_pred EEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 287 LKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 287 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
|.|+.+.+........+.++++|..|.++++.+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 7777776665554445667777777777776654
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.11 E-value=7.8e-08 Score=92.93 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=77.7
Q ss_pred CCCCCeEEccCCcceeeCCC---CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccC--CC-CCCCC
Q 048827 377 MSSLQNIKLSNNQLKFDVSE---IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEI--PE-FTEGL 450 (576)
Q Consensus 377 l~~L~~L~L~~n~~~~~~~~---~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~-~~~~~ 450 (576)
+..|+.|..+++...++..- .....+|+.+-++.|+..+......-....+.|+.+++.++...... .. -.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 45566666655543222111 33445666666666653322222221222233666776666543221 12 45677
Q ss_pred CCcEEEccCCcCC-ccC----hhhhhcCccCCeeeCccCcCC-ccCcccccCCCCCCEEeCCCCcCccc--ccccccCCC
Q 048827 451 SLKVLNIGSNKIT-GHI----PSSISNLIELEMLDIQRNQIA-GTIPTSLGLLSKLQWLDVSVNSLTGK--IPTSLLGIR 522 (576)
Q Consensus 451 ~L~~L~L~~n~l~-~~~----~~~l~~l~~L~~L~Ls~n~~~-~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~ 522 (576)
.|+.+.+++|... +.- ...-..+..|..+.|++++.+ +..-+.+..+++|+++++-+|+-... +...-.++|
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 7777777776542 221 122234566777777777653 34445666777777777777753321 222223466
Q ss_pred CCCEEE
Q 048827 523 GLRHAN 528 (576)
Q Consensus 523 ~L~~L~ 528 (576)
++++.-
T Consensus 453 ~i~v~a 458 (483)
T KOG4341|consen 453 NIKVHA 458 (483)
T ss_pred cceehh
Confidence 655543
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=7.4e-07 Score=81.44 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred ccCCCCCCEEEccCCCCCcCCCcc----ccCCCCCCEEEccCCcC
Q 048827 134 LSNLTRLTQLILEDNSLEGSIPPG----LGHLSLLQTLSLGGNRL 174 (576)
Q Consensus 134 l~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~L~~~~~ 174 (576)
+-+|++|+..+|+.|.+....|+. +++-+.|++|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 345566666666666555444432 33445555555555544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=3.3e-07 Score=74.98 Aligned_cols=137 Identities=21% Similarity=0.236 Sum_probs=100.3
Q ss_pred CCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCC-CCCCCCcEEEccCCcCCccChhhhhcCccCCeee
Q 048827 402 GLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEF-TEGLSLKVLNIGSNKITGHIPSSISNLIELEMLD 480 (576)
Q Consensus 402 ~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 480 (576)
.+..++++.|++.........-.....|+.+++++|.+....+.+ ..++.++.|++++|.+. .+|+.+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 356788888877633222222222233889999999998655554 45568999999999999 6788899999999999
Q ss_pred CccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCCC
Q 048827 481 IQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG 541 (576)
Q Consensus 481 Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~ 541 (576)
++.|++. ..|+.+..+.++-.|+..+|.+. .+|..+-.-+.....+++++++.+.=|..
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 9999998 77888888999999999999887 66655443344445555777777655543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=4e-05 Score=76.41 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=23.1
Q ss_pred CCccEEEccCCcCCCccchhhhCCC-CCCeEEccCCcceeeCCCCCCCCCCCEEEccCC
Q 048827 354 DSLSSIDLSNNLLTDGISSFFTNMS-SLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSN 411 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n 411 (576)
.+++.|++++|.++. +| .+| +|+.|.+++|.-....+.. .+++|+.|++++|
T Consensus 52 ~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIES-LP----VLPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCCCcccCCch-hhhhhhheEccCc
Confidence 455566666655444 22 122 4555555554322222221 1234555555554
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.96 E-value=5.8e-06 Score=75.72 Aligned_cols=209 Identities=20% Similarity=0.175 Sum_probs=133.7
Q ss_pred CCccEEEccCCcCccCCCC-----CCCCCCccEEEccCCcC---CCcc-------chhhhCCCCCCeEEccCCcceeeCC
Q 048827 331 RPLSNVNLAGCKLRGALPK-----FTRPDSLSSIDLSNNLL---TDGI-------SSFFTNMSSLQNIKLSNNQLKFDVS 395 (576)
Q Consensus 331 ~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~Ls~n~l---~~~~-------~~~~~~l~~L~~L~L~~n~~~~~~~ 395 (576)
..++.+++++|.+...-.. +..-.+|+..++++--. .+.+ ...+..||.|+..+|++|.+....+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 3788899999877532111 12236677776665321 1122 2345678999999999998865554
Q ss_pred C-----CCCCCCCCEEEccCCcCccccchhhhh-----------hccCCcCEEEccCCcCcccCCC-----CCCCCCCcE
Q 048827 396 E-----IRFPDGLASIDLHSNQITGSLSSIINN-----------RTSSFLEALDVSGNHFSGEIPE-----FTEGLSLKV 454 (576)
Q Consensus 396 ~-----~~~~~~L~~L~ls~n~~~~~~~~~~~~-----------~~~~~L~~L~l~~n~~~~~~~~-----~~~~~~L~~ 454 (576)
. ++.-+.|.+|.+++|.+......-+.. ...+.|+++.+..|++..-... +..-..|+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 4 666788999999998776443332221 1125688888888887632221 333358888
Q ss_pred EEccCCcCCccC-----hhhhhcCccCCeeeCccCcCCccCc----ccccCCCCCCEEeCCCCcCcccccccc------c
Q 048827 455 LNIGSNKITGHI-----PSSISNLIELEMLDIQRNQIAGTIP----TSLGLLSKLQWLDVSVNSLTGKIPTSL------L 519 (576)
Q Consensus 455 L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~~~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~l------~ 519 (576)
+.+..|.|...- -..+..+.+|+.|||.+|.++-... ..+...+.|+.|.+.+|-++.....++ .
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~ 269 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK 269 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence 888888886432 2345567889999999998763222 334456678999999998886443322 1
Q ss_pred CCCCCCEEEccCCcceecCC
Q 048827 520 GIRGLRHANFRANRLCGEIP 539 (576)
Q Consensus 520 ~l~~L~~L~l~~n~l~g~iP 539 (576)
..++|..|...+|-+.|.+-
T Consensus 270 ~~p~l~~L~~~Yne~~~~~i 289 (388)
T COG5238 270 FVPNLMPLPGDYNERRGGII 289 (388)
T ss_pred cCCCccccccchhhhcCcee
Confidence 26788888888887765443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=3.3e-06 Score=91.10 Aligned_cols=134 Identities=16% Similarity=0.262 Sum_probs=65.1
Q ss_pred CCCCEEecCCCCCCccCCccccc-CCCCCCEEEccCCCCCcC-CCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcE
Q 048827 113 HFLEVMVISGMKHITGPIPESLS-NLTRLTQLILEDNSLEGS-IPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLV 190 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 190 (576)
.+|++|++++...+...-|..++ .+|.|+.|.+.+-.+... .-.-..++++|+.||+++++++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 35666666653333322233333 356666666665544321 111233456666666666666522 45566666666
Q ss_pred EEccCCcccc-cCcccccCCCCCCEEEcccCCCcccC--C----ccccCCCCCCEEEccCCcccc
Q 048827 191 INLGKNSVSG-PIPPTFISFLSLQSLDFSFNLLSGFI--P----DALVRSQNLTYIDLSNNQFSG 248 (576)
Q Consensus 191 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~~~~ 248 (576)
|.+.+-.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6655544432 11124455666666666554432111 0 111235566666666555443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.81 E-value=4e-05 Score=67.41 Aligned_cols=104 Identities=23% Similarity=0.279 Sum_probs=80.3
Q ss_pred cCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccC-cccccCCCCCCEEeCCC
Q 048827 429 LEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTI-PTSLGLLSKLQWLDVSV 507 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~ 507 (576)
...+|+++|.+. ..+.+..++.|.+|.+.+|+|+...|.--..+++|+.|.|.+|.+.... -..+..++.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 567888888776 4566888889999999999999777766666788999999999876321 14467889999999999
Q ss_pred CcCccccc---ccccCCCCCCEEEccCCc
Q 048827 508 NSLTGKIP---TSLLGIRGLRHANFRANR 533 (576)
Q Consensus 508 n~l~~~~p---~~l~~l~~L~~L~l~~n~ 533 (576)
|++...-- -.+..+++|+.||+.+=.
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhh
Confidence 99885211 245678999999988743
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=7.9e-05 Score=74.32 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=29.1
Q ss_pred CCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCC
Q 048827 331 RPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNN 388 (576)
Q Consensus 331 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 388 (576)
.+++.|++++|.+.. +|. -+++|++|.+++|.-...+|..+. ++|+.|++++|
T Consensus 52 ~~l~~L~Is~c~L~s-LP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIES-LPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcc-cCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 356677777765542 232 234577777766543333444332 46677777666
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.4e-05 Score=51.81 Aligned_cols=36 Identities=36% Similarity=0.626 Sum_probs=17.2
Q ss_pred CCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCC
Q 048827 139 RLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLK 175 (576)
Q Consensus 139 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~ 175 (576)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555544
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.73 E-value=9.9e-07 Score=85.50 Aligned_cols=285 Identities=15% Similarity=0.075 Sum_probs=166.1
Q ss_pred CCCEEEccCCcccccCc--hhhcCCCCCCeEEeecccC-cCCChhhh-cCCCCCcEEEccCCcCccccC-ccccCCCCCC
Q 048827 235 NLTYIDLSNNQFSGKFP--ISICGLANLQDLSLSHNQL-TGTIPEQI-GGLRSLNSLKLSEMDSQIRLP-IILGRGIPSL 309 (576)
Q Consensus 235 ~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~L~~~~~-~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L 309 (576)
.|+.|.+.++.-.+.-+ ..-..++++++|.+.+|.. ++..-..+ ..+++|++|++..|....... .....+|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56777777765432211 2234677788887777752 22211222 257778888777754333221 1134567777
Q ss_pred CEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCC--ccchhhhCCCCCCeEEccC
Q 048827 310 LSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTD--GISSFFTNMSSLQNIKLSN 387 (576)
Q Consensus 310 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~ 387 (576)
++++++++.--.+ + +.-+-+.++..++.+.+.+|.-.+ .+...-..+..+.++++..
T Consensus 219 ~~lNlSwc~qi~~------------------~---gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 219 KYLNLSWCPQISG------------------N---GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred HHhhhccCchhhc------------------C---cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 7777777632101 0 011122333445555555542111 0111112445566666666
Q ss_pred CcceeeCCC---CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccC-CC--CCCCCCCcEEEccCCc
Q 048827 388 NQLKFDVSE---IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEI-PE--FTEGLSLKVLNIGSNK 461 (576)
Q Consensus 388 n~~~~~~~~---~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~--~~~~~~L~~L~L~~n~ 461 (576)
|....+... -..+..|+.++.+++...+..+.+--.....+|+.+.+.+|+.-... .. -.+++.|+.+++..+.
T Consensus 278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 643322221 34567899999998877655544433344456999999999743222 11 4577899999999886
Q ss_pred CCc--cChhhhhcCccCCeeeCccCcC-CccC----cccccCCCCCCEEeCCCCcCc-ccccccccCCCCCCEEEccCCc
Q 048827 462 ITG--HIPSSISNLIELEMLDIQRNQI-AGTI----PTSLGLLSKLQWLDVSVNSLT-GKIPTSLLGIRGLRHANFRANR 533 (576)
Q Consensus 462 l~~--~~~~~l~~l~~L~~L~Ls~n~~-~~~~----p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~ 533 (576)
... .+...-.+++.|++|.++.|.. ++.. ...-..+..|+.+.+++|+.+ +..-+.+..++.|+.+++-+++
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 542 2233335689999999998864 3331 222345678999999999865 3455667889999999999987
Q ss_pred ceecCCC
Q 048827 534 LCGEIPQ 540 (576)
Q Consensus 534 l~g~iP~ 540 (576)
--.+-|.
T Consensus 438 ~vtk~~i 444 (483)
T KOG4341|consen 438 DVTKEAI 444 (483)
T ss_pred hhhhhhh
Confidence 5434443
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3.2e-05 Score=51.20 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=16.1
Q ss_pred CCCEEeCCCCcCcccccccccCCCCCCEEEccCCcce
Q 048827 499 KLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 499 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444455555444 33433444555555555555444
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=5.9e-05 Score=66.36 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=77.6
Q ss_pred CCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCccc-ccccccCCCCCCEEEc
Q 048827 451 SLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGK-IPTSLLGIRGLRHANF 529 (576)
Q Consensus 451 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l 529 (576)
....++|++|.+... ..|..++.|.+|.+++|.|+...|.--..++.|..|.+.+|.+... .-..+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 567899999988733 4677889999999999999976666556678899999999988742 1245788999999999
Q ss_pred cCCcceecCCCC-----CCCCCCCccccc
Q 048827 530 RANRLCGEIPQG-----RPYSIFPGSAYA 553 (576)
Q Consensus 530 ~~n~l~g~iP~~-----~~~~~l~~~~~~ 553 (576)
-+|+++ ..+.. ..+++++.+||.
T Consensus 121 l~Npv~-~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 121 LGNPVE-HKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCchh-cccCceeEEEEecCcceEeehh
Confidence 999998 33433 566777777765
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=7.6e-05 Score=80.79 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=48.0
Q ss_pred CCCCeEEccCCcce-eeCCC--CCCCCCCCEEEccCCcCcccc-chhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCc
Q 048827 378 SSLQNIKLSNNQLK-FDVSE--IRFPDGLASIDLHSNQITGSL-SSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLK 453 (576)
Q Consensus 378 ~~L~~L~L~~n~~~-~~~~~--~~~~~~L~~L~ls~n~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~ 453 (576)
.+|+.|++++...- ..++. ...+|+|++|.+++-.+...- .....+.+ +|..||++++.++. +..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp--NL~sLDIS~TnI~n-l~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP--NLRSLDISGTNISN-LSGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC--ccceeecCCCCccC-cHHHhccccHH
Confidence 46777777765432 11111 334566666666665543221 11222222 25555555555442 22344455555
Q ss_pred EEEccCCcCCc-cChhhhhcCccCCeeeCccCc
Q 048827 454 VLNIGSNKITG-HIPSSISNLIELEMLDIQRNQ 485 (576)
Q Consensus 454 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~ 485 (576)
.|.+.+-.+.. ..-..+.++++|+.||+|...
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 55555444432 222334445555555555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00015 Score=66.59 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=17.9
Q ss_pred cCCCCCCEEEccCC--cCCCCCCccCCCCCCCcEEEccCCccc
Q 048827 159 GHLSLLQTLSLGGN--RLKGPIPPSLGNLRNLLVINLGKNSVS 199 (576)
Q Consensus 159 ~~l~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~l~~n~~~ 199 (576)
-.+++|++|.++.| ++.+.++.-...+++|++|++++|++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33445555555555 333333333333445555555554443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.21 E-value=0.0014 Score=55.36 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=18.8
Q ss_pred ccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEcc
Q 048827 134 LSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLG 194 (576)
Q Consensus 134 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 194 (576)
|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 33444444444432 222222233444444444444432 222222334444444444443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.11 E-value=0.0014 Score=55.44 Aligned_cols=105 Identities=22% Similarity=0.264 Sum_probs=43.1
Q ss_pred cccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCC
Q 048827 157 GLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNL 236 (576)
Q Consensus 157 ~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 236 (576)
.|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......|.++++|+.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 355566666666654 343334445566666666666553 4433334555555666666644 3332333445555566
Q ss_pred CEEEccCCcccccCchhhcCCCCCCeEEee
Q 048827 237 TYIDLSNNQFSGKFPISICGLANLQDLSLS 266 (576)
Q Consensus 237 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 266 (576)
+.+++..+ +.......+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 66665443 332223334444 55555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=5.5e-05 Score=69.76 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=76.5
Q ss_pred cCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCc-ccccCCCCCCEEeCCC
Q 048827 429 LEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIP-TSLGLLSKLQWLDVSV 507 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~L~~ 507 (576)
.+.|++.+|.+. .+..+..++.|+.|.|+-|+|+.. ..+..|+.|++|+|..|.|.+... ..+.++++|++|.|..
T Consensus 21 vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 21 VKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhhcccCCCcc-HHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 788999999887 344577888999999999999855 457889999999999999874322 4677899999999999
Q ss_pred CcCcccccc-----cccCCCCCCEEE
Q 048827 508 NSLTGKIPT-----SLLGIRGLRHAN 528 (576)
Q Consensus 508 n~l~~~~p~-----~l~~l~~L~~L~ 528 (576)
|+-.|.-+. .+.-+|+|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 998876543 345577888776
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0014 Score=60.45 Aligned_cols=86 Identities=24% Similarity=0.222 Sum_probs=56.4
Q ss_pred ccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCC--cccccCcccccCCCCCCEEEcccCCCcccCCcc---ccC
Q 048827 158 LGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKN--SVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDA---LVR 232 (576)
Q Consensus 158 l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~ 232 (576)
.-.+..|+.|++.+..++.. ..+-.+++|++|.++.| ++.+.++....++++|++|++++|++.. +.. +..
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 34456677777777776622 34667788888888888 6665565556666888888888887762 333 334
Q ss_pred CCCCCEEEccCCccc
Q 048827 233 SQNLTYIDLSNNQFS 247 (576)
Q Consensus 233 l~~L~~L~l~~n~~~ 247 (576)
+.+|..|++..|..+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 555666666666544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.00011 Score=67.85 Aligned_cols=100 Identities=22% Similarity=0.191 Sum_probs=81.1
Q ss_pred CCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccc-cccccCCCCCCE
Q 048827 448 EGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKI-PTSLLGIRGLRH 526 (576)
Q Consensus 448 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~ 526 (576)
.+.+.+.|++-+|.+++. .....++.|++|.||-|+|+..- .+..|+.|++|+|..|.|.... -..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345778899999999854 44567999999999999998543 4789999999999999998521 246789999999
Q ss_pred EEccCCcceecCCCC------CCCCCCCccc
Q 048827 527 ANFRANRLCGEIPQG------RPYSIFPGSA 551 (576)
Q Consensus 527 L~l~~n~l~g~iP~~------~~~~~l~~~~ 551 (576)
|-|..|+=+|.-+.. ..+++|+++|
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999999998887 4566777665
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.38 E-value=0.00054 Score=72.53 Aligned_cols=62 Identities=29% Similarity=0.232 Sum_probs=26.8
Q ss_pred CCCCCCEEEccCCc-ccccCchhhcC-CCCCCeEEeeccc-CcCCChhhh-cCCCCCcEEEccCCc
Q 048827 232 RSQNLTYIDLSNNQ-FSGKFPISICG-LANLQDLSLSHNQ-LTGTIPEQI-GGLRSLNSLKLSEMD 293 (576)
Q Consensus 232 ~l~~L~~L~l~~n~-~~~~~~~~l~~-l~~L~~L~L~~~~-~~~~~~~~l-~~l~~L~~L~L~~~~ 293 (576)
.+++|+.|+++++. +++..-..+.. +++|++|.+..|. +++..-..+ ..++.|++|+++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34455555555544 33333333322 4555555544444 332222222 234455555555444
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.26 E-value=0.00038 Score=73.69 Aligned_cols=110 Identities=23% Similarity=0.101 Sum_probs=51.5
Q ss_pred CCCCCEEEccCCCCCcC--CCccccCCCCCCEEEccCC-cCCCCCC----ccCCCCCCCcEEEccCCc-ccccCcccccC
Q 048827 137 LTRLTQLILEDNSLEGS--IPPGLGHLSLLQTLSLGGN-RLKGPIP----PSLGNLRNLLVINLGKNS-VSGPIPPTFIS 208 (576)
Q Consensus 137 l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~L~~~-~~~~~~p----~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~ 208 (576)
+++|+.|.+.++.-... +-.....+++|+.|+++++ ......+ .....+++|+.|+++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555432211 1123344556666666542 1110111 122345666666666655 44333333322
Q ss_pred -CCCCCEEEcccCC-CcccCCc-cccCCCCCCEEEccCCcc
Q 048827 209 -FLSLQSLDFSFNL-LSGFIPD-ALVRSQNLTYIDLSNNQF 246 (576)
Q Consensus 209 -l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~l~~n~~ 246 (576)
+++|++|.+.++. +++.... ....+++|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5666666655554 3433222 233566677777776544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.23 E-value=0.019 Score=31.42 Aligned_cols=19 Identities=42% Similarity=0.793 Sum_probs=10.4
Q ss_pred CCeeeCccCcCCccCccccc
Q 048827 476 LEMLDIQRNQIAGTIPTSLG 495 (576)
Q Consensus 476 L~~L~Ls~n~~~~~~p~~l~ 495 (576)
|++|+|++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666555 4554443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.04 E-value=0.00054 Score=71.06 Aligned_cols=180 Identities=27% Similarity=0.292 Sum_probs=84.9
Q ss_pred ccEEEccCCcCccCCC-----CCCCCCCccEEEccCCcCCCccchhh----hCC-CCCCeEEccCCcceeeCCC-----C
Q 048827 333 LSNVNLAGCKLRGALP-----KFTRPDSLSSIDLSNNLLTDGISSFF----TNM-SSLQNIKLSNNQLKFDVSE-----I 397 (576)
Q Consensus 333 L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~~~~~~~~-----~ 397 (576)
+..+.+.+|.+..... .....++|+.|++++|.+.+.....+ ... ..+++|++..|.++..... +
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6667777776653321 12334677777777777764332222 222 3455566666665533222 4
Q ss_pred CCCCCCCEEEccCCcCccc----cchhhhh--hccCCcCEEEccCCcCcccCCC-----CCCCCC-CcEEEccCCcCCcc
Q 048827 398 RFPDGLASIDLHSNQITGS----LSSIINN--RTSSFLEALDVSGNHFSGEIPE-----FTEGLS-LKVLNIGSNKITGH 465 (576)
Q Consensus 398 ~~~~~L~~L~ls~n~~~~~----~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~-----~~~~~~-L~~L~L~~n~l~~~ 465 (576)
.....++.++++.|.+... ++..+.. .....+++|++.+|.++...-. +...+. +..+++.+|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4466677777777766411 1111111 0112355555555555421111 222333 44455555555432
Q ss_pred ----ChhhhhcC-ccCCeeeCccCcCCccCc----ccccCCCCCCEEeCCCCcCcc
Q 048827 466 ----IPSSISNL-IELEMLDIQRNQIAGTIP----TSLGLLSKLQWLDVSVNSLTG 512 (576)
Q Consensus 466 ----~~~~l~~l-~~L~~L~Ls~n~~~~~~p----~~l~~l~~L~~L~L~~n~l~~ 512 (576)
....+..+ ..+++++++.|.+++... +.+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12223333 444555555555544222 233344455555555555553
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.14 E-value=0.001 Score=68.96 Aligned_cols=204 Identities=21% Similarity=0.235 Sum_probs=123.8
Q ss_pred CCCEEECcCCCCCCCCCCCc----CCCCCccEEEccCCcCccCC-----CCCCCC-CCccEEEccCCcCCCc----cchh
Q 048827 308 SLLSIDLSYNNLSLGTVPNW----IKDRPLSNVNLAGCKLRGAL-----PKFTRP-DSLSSIDLSNNLLTDG----ISSF 373 (576)
Q Consensus 308 ~L~~L~l~~~~l~~~~~~~~----~~~~~L~~L~l~~~~~~~~~-----~~~~~~-~~L~~L~Ls~n~l~~~----~~~~ 373 (576)
.+..+.+.+|.+........ -..+.|+.|++++|.+.+.. ...... ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37788888888875443322 22337888888888876321 112233 5677788888877653 3445
Q ss_pred hhCCCCCCeEEccCCcceeeC-----CCC----CCCCCCCEEEccCCcCccccchhhhh--hcc-CCcCEEEccCCcCcc
Q 048827 374 FTNMSSLQNIKLSNNQLKFDV-----SEI----RFPDGLASIDLHSNQITGSLSSIINN--RTS-SFLEALDVSGNHFSG 441 (576)
Q Consensus 374 ~~~l~~L~~L~L~~n~~~~~~-----~~~----~~~~~L~~L~ls~n~~~~~~~~~~~~--~~~-~~L~~L~l~~n~~~~ 441 (576)
+.....++.++++.|.+.... ..+ ....++++|++++|.++...-..+.. ... ..+..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 566778888888888774111 012 24567888888888877332221111 111 225558888888775
Q ss_pred cC-----CCCCCC-CCCcEEEccCCcCCccC----hhhhhcCccCCeeeCccCcCCccCc----ccccCCCCCCEEeCCC
Q 048827 442 EI-----PEFTEG-LSLKVLNIGSNKITGHI----PSSISNLIELEMLDIQRNQIAGTIP----TSLGLLSKLQWLDVSV 507 (576)
Q Consensus 442 ~~-----~~~~~~-~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~Ls~n~~~~~~p----~~l~~l~~L~~L~L~~ 507 (576)
.. +.+..+ ..++.+++..|.++... .+.+..++.++++.+++|++.+... +.+.....+..+-+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 42 124444 57788888888887543 4456677888889999888875322 2233444555566654
Q ss_pred CcCc
Q 048827 508 NSLT 511 (576)
Q Consensus 508 n~l~ 511 (576)
+...
T Consensus 328 ~~~~ 331 (478)
T KOG4308|consen 328 TGKG 331 (478)
T ss_pred cCcc
Confidence 4433
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.04 E-value=0.11 Score=26.32 Aligned_cols=13 Identities=54% Similarity=0.601 Sum_probs=4.6
Q ss_pred CCCEEeCCCCcCc
Q 048827 499 KLQWLDVSVNSLT 511 (576)
Q Consensus 499 ~L~~L~L~~n~l~ 511 (576)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.90 E-value=0.04 Score=49.02 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=38.8
Q ss_pred CcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCcc-Cccccc-CCCCCCEEeCCCC-cCcccccccccCCCCCCEEE
Q 048827 452 LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGT-IPTSLG-LLSKLQWLDVSVN-SLTGKIPTSLLGIRGLRHAN 528 (576)
Q Consensus 452 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~ 528 (576)
++.++-+++.|..+--+.+.+++.++.|.+.+|.-.+- --+.++ -.++|+.|+|++| +|+...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 44555555555544445555555555555555543210 001111 2245666666655 34444444555555555555
Q ss_pred ccC
Q 048827 529 FRA 531 (576)
Q Consensus 529 l~~ 531 (576)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.92 E-value=0.0065 Score=54.98 Aligned_cols=84 Identities=21% Similarity=0.184 Sum_probs=42.6
Q ss_pred cCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCE
Q 048827 135 SNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQS 214 (576)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 214 (576)
..++..+.||++.|++. .+-..|+-++.|..||++.|.+. .+|..++.+..++++++..|..+ ..|.+++..+.+++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 33445555555555544 33344444555555555555554 45555555555555555554443 44445555555555
Q ss_pred EEcccCC
Q 048827 215 LDFSFNL 221 (576)
Q Consensus 215 L~l~~n~ 221 (576)
+++.++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 5554443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.60 E-value=0.05 Score=48.44 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=29.1
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccC-CCCCCEEEccCCC-CCcCCCccccCCCCCCEEEcc
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSN-LTRLTQLILEDNS-LEGSIPPGLGHLSLLQTLSLG 170 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~-~~~~~p~~l~~l~~L~~L~L~ 170 (576)
+--+.+.+++.++.|.+.+|..+.+.-.+.++. .++|+.|++++|. |+..--..+.++++|+.|.+.
T Consensus 116 eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 116 EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 333444555555555555554444332222222 3455555555442 332222334444444444443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.87 E-value=0.02 Score=51.94 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=66.2
Q ss_pred CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCC
Q 048827 446 FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLR 525 (576)
Q Consensus 446 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 525 (576)
+..+...+.||++.|++. .+...|.-++.|..|+++.|.+. ..|..+.+...+..+++..|..+ ..|-++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 455566777888887776 34455666777888888888887 77888888888888888877777 6777888888888
Q ss_pred EEEccCCcce
Q 048827 526 HANFRANRLC 535 (576)
Q Consensus 526 ~L~l~~n~l~ 535 (576)
++++.+|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888888876
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.71 E-value=0.59 Score=26.57 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=12.3
Q ss_pred CCCCCEEEccCCcceecCCCC
Q 048827 521 IRGLRHANFRANRLCGEIPQG 541 (576)
Q Consensus 521 l~~L~~L~l~~n~l~g~iP~~ 541 (576)
+++|++|++++|++. .+|.+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356677777777666 55543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.71 E-value=0.59 Score=26.57 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=12.3
Q ss_pred CCCCCEEEccCCcceecCCCC
Q 048827 521 IRGLRHANFRANRLCGEIPQG 541 (576)
Q Consensus 521 l~~L~~L~l~~n~l~g~iP~~ 541 (576)
+++|++|++++|++. .+|.+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356677777777666 55543
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.32 E-value=0.46 Score=26.45 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=5.4
Q ss_pred CCcEEEccCCcCCc
Q 048827 451 SLKVLNIGSNKITG 464 (576)
Q Consensus 451 ~L~~L~L~~n~l~~ 464 (576)
+|++|+|++|++++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 34444444444443
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.92 E-value=11 Score=38.44 Aligned_cols=88 Identities=20% Similarity=0.177 Sum_probs=47.2
Q ss_pred CCccEEEccCCcCCCccchh--hhCCCCCCeEEccCCcc---e--eeC-CC----CCCCCCCCEEEccCCcCccccchhh
Q 048827 354 DSLSSIDLSNNLLTDGISSF--FTNMSSLQNIKLSNNQL---K--FDV-SE----IRFPDGLASIDLHSNQITGSLSSII 421 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~~---~--~~~-~~----~~~~~~L~~L~ls~n~~~~~~~~~~ 421 (576)
..+++|++++|...+..... ...-+..+.+++....- . +.. +. -....-++.+.++.|+........+
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 44777777777666543322 22334555555543221 0 000 00 1112346778888888776555444
Q ss_pred hh-hccCCcCEEEccCCcCcc
Q 048827 422 NN-RTSSFLEALDVSGNHFSG 441 (576)
Q Consensus 422 ~~-~~~~~L~~L~l~~n~~~~ 441 (576)
.. ...+.+..|++++|....
T Consensus 434 n~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred HhhccCcccccccccCCCccc
Confidence 32 233458899999987764
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.66 E-value=11 Score=38.47 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=15.9
Q ss_pred CCCCeEEeecccCcCCChhhhc
Q 048827 258 ANLQDLSLSHNQLTGTIPEQIG 279 (576)
Q Consensus 258 ~~L~~L~L~~~~~~~~~~~~l~ 279 (576)
+.+++++++.|.+....|-.+.
T Consensus 165 pr~r~~dls~npi~dkvpihl~ 186 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLP 186 (553)
T ss_pred chhhhhccCCCcccccCCcccc
Confidence 5678888888888776665543
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.88 E-value=3.4 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=11.9
Q ss_pred CCCCEEEccCCcceecCCC
Q 048827 522 RGLRHANFRANRLCGEIPQ 540 (576)
Q Consensus 522 ~~L~~L~l~~n~l~g~iP~ 540 (576)
++|+.|++++|++. .+|.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777766 5664
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.19 E-value=6.3 Score=22.30 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=10.3
Q ss_pred CCCCEEecCCCCCCcc
Q 048827 113 HFLEVMVISGMKHITG 128 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~ 128 (576)
++|++|+|++|..+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5667777777666654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.38 E-value=8.8 Score=21.94 Aligned_cols=14 Identities=36% Similarity=0.518 Sum_probs=8.2
Q ss_pred CCCCEEeCCCCcCc
Q 048827 498 SKLQWLDVSVNSLT 511 (576)
Q Consensus 498 ~~L~~L~L~~n~l~ 511 (576)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666654
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.55 E-value=8 Score=22.41 Aligned_cols=17 Identities=53% Similarity=0.530 Sum_probs=11.5
Q ss_pred CCccEEEccCCcCCCcc
Q 048827 354 DSLSSIDLSNNLLTDGI 370 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~ 370 (576)
++|++|+|++|.+.+..
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 46777777777776533
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.13 E-value=6.4 Score=40.97 Aligned_cols=62 Identities=27% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCccEEEccCCcCCCc--cchhhhCCCCCCeEEccCC--cceeeCCCCC--CCCCCCEEEccCCcCccc
Q 048827 354 DSLSSIDLSNNLLTDG--ISSFFTNMSSLQNIKLSNN--QLKFDVSEIR--FPDGLASIDLHSNQITGS 416 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~--~~~~L~~L~ls~n~~~~~ 416 (576)
+.+..+.|++|++... +...-...|+|+.|+|++| .+.. ..++. ....|++|-+.+|++...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCccccc
Confidence 7888889999987652 1122234578899999988 3321 11222 224477788888877643
No 90
>PRK14762 membrane protein; Provisional
Probab=47.13 E-value=34 Score=19.06 Aligned_cols=19 Identities=21% Similarity=0.637 Sum_probs=13.3
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 048827 1 MQILGWVLKVLLMCSVLGM 19 (576)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (576)
||+++|.-.+.++.-++..
T Consensus 1 mki~lw~i~iifligllvv 19 (27)
T PRK14762 1 MKIILWAVLIIFLIGLLVV 19 (27)
T ss_pred CeeHHHHHHHHHHHHHHHH
Confidence 8999999776665555543
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.81 E-value=10 Score=39.59 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=33.0
Q ss_pred ccCCCCCCCEEECcCCCCCCCC-CCCcC-CCCCccEEEccCC--cCccCCCCC--CCCCCccEEEccCCcCCC
Q 048827 302 LGRGIPSLLSIDLSYNNLSLGT-VPNWI-KDRPLSNVNLAGC--KLRGALPKF--TRPDSLSSIDLSNNLLTD 368 (576)
Q Consensus 302 ~~~~~~~L~~L~l~~~~l~~~~-~~~~~-~~~~L~~L~l~~~--~~~~~~~~~--~~~~~L~~L~Ls~n~l~~ 368 (576)
...+.+.+..+.+++|++.... +.... ..++|+.|+|++| .+... +.. .+...|++|.+.+|.+..
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcccc
Confidence 3456778888888888765111 11111 1226666666666 22111 111 111455666666665544
No 92
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.21 E-value=22 Score=27.96 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhh
Q 048827 10 VLLMCSVLGMFSVTS 24 (576)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (576)
++++.++|+++++.+
T Consensus 6 ~llL~l~LA~lLlis 20 (95)
T PF07172_consen 6 FLLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
Done!