Query 048827
Match_columns 576
No_of_seqs 422 out of 4565
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 00:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-66 6.9E-71 577.1 42.7 517 37-570 9-752 (768)
2 4eco_A Uncharacterized protein 100.0 7.8E-54 2.7E-58 465.4 19.2 457 35-535 25-600 (636)
3 3t6q_A CD180 antigen; protein- 100.0 8.9E-51 3E-55 441.3 40.4 466 82-560 32-562 (606)
4 4ecn_A Leucine-rich repeat pro 100.0 1.7E-51 5.7E-56 454.3 33.8 457 34-536 263-841 (876)
5 3rgz_A Protein brassinosteroid 100.0 4.5E-51 1.5E-55 453.8 30.8 443 82-537 199-743 (768)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-49 3.8E-54 432.7 40.4 462 82-562 31-562 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-47 4.3E-52 422.1 42.2 470 82-562 24-626 (680)
8 3t6q_A CD180 antigen; protein- 100.0 6.4E-48 2.2E-52 418.8 39.3 445 103-556 25-534 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 9E-48 3.1E-52 431.6 36.2 473 67-560 10-562 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-47 2E-51 411.3 34.9 440 102-556 23-532 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 1.8E-46 6.2E-51 404.5 37.1 442 82-540 27-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 2.8E-46 9.4E-51 403.1 34.5 446 103-562 20-535 (570)
13 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-44 6E-49 397.0 43.9 447 103-556 17-547 (680)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2E-44 6.7E-49 386.7 33.8 457 83-560 26-512 (549)
15 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-44 3.4E-48 398.9 35.7 444 103-560 17-540 (844)
16 4eco_A Uncharacterized protein 100.0 7.1E-46 2.4E-50 402.9 17.4 432 113-559 81-601 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 4.5E-43 1.5E-47 387.2 28.9 351 196-559 435-841 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 8.7E-44 3E-48 379.0 22.1 447 86-559 3-482 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 8.4E-41 2.9E-45 364.9 36.3 461 83-560 52-582 (635)
20 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-42 1.9E-46 367.7 25.3 442 103-560 18-487 (549)
21 2z7x_B TOLL-like receptor 1, v 100.0 7.4E-42 2.5E-46 364.1 20.4 433 82-539 20-485 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-40 1.9E-44 352.6 28.7 447 86-559 34-511 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 6.5E-39 2.2E-43 350.0 34.2 436 82-536 75-581 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 6E-39 2E-43 335.9 30.3 362 138-541 30-414 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-39 7.2E-44 348.2 25.5 434 82-540 51-515 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 1.3E-38 4.3E-43 331.1 27.4 391 113-560 11-431 (454)
27 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-39 8.4E-44 320.6 20.1 295 36-342 2-302 (313)
28 3v47_A TOLL-like receptor 5B a 100.0 3.8E-38 1.3E-42 329.8 28.7 362 113-515 30-412 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 1.5E-37 5.1E-42 323.0 27.3 396 82-541 10-435 (454)
30 1o6v_A Internalin A; bacterial 100.0 3.1E-35 1.1E-39 308.2 32.6 346 136-536 44-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 6.2E-36 2.1E-40 311.1 27.0 361 104-541 33-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 4.7E-35 1.6E-39 306.8 33.0 347 110-512 43-389 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 4.6E-35 1.6E-39 308.2 26.7 318 141-511 14-333 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-34 8.1E-39 299.2 27.9 363 127-566 31-393 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 2.1E-33 7.2E-38 295.5 26.8 309 104-418 25-337 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 6.2E-33 2.1E-37 284.0 29.5 311 111-464 43-353 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 6.3E-33 2.2E-37 284.0 24.7 335 136-562 43-378 (390)
38 3oja_B Anopheles plasmodium-re 100.0 2.5E-32 8.4E-37 294.8 29.4 312 111-465 49-360 (597)
39 4fmz_A Internalin; leucine ric 100.0 4.7E-32 1.6E-36 273.0 28.4 307 134-535 40-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 1E-32 3.6E-37 297.7 25.1 335 136-562 49-384 (597)
41 4fmz_A Internalin; leucine ric 100.0 7.1E-32 2.4E-36 271.7 29.2 308 108-511 39-346 (347)
42 1ogq_A PGIP-2, polygalacturona 100.0 9.5E-33 3.3E-37 273.3 18.1 185 354-566 125-312 (313)
43 4fcg_A Uncharacterized protein 100.0 2.3E-32 7.8E-37 272.2 15.7 275 31-320 18-314 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 6.4E-33 2.2E-37 290.6 0.4 358 139-535 4-411 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 5.8E-33 2E-37 290.9 -4.5 333 134-488 24-412 (461)
46 1xku_A Decorin; proteoglycan, 100.0 4.9E-28 1.7E-32 241.7 30.2 149 138-292 31-181 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-28 7.1E-33 244.6 26.4 127 139-271 34-160 (332)
48 1xku_A Decorin; proteoglycan, 100.0 5E-28 1.7E-32 241.6 28.7 273 104-388 45-329 (330)
49 2ft3_A Biglycan; proteoglycan, 100.0 4.4E-28 1.5E-32 242.2 24.5 273 104-389 47-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 2.8E-31 9.6E-36 287.2 -3.9 422 105-531 65-547 (592)
51 3ogk_B Coronatine-insensitive 100.0 2.2E-30 7.6E-35 280.1 -1.4 402 130-537 65-528 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 1.8E-27 6.1E-32 239.9 18.4 268 103-418 44-318 (353)
53 4fcg_A Uncharacterized protein 99.9 5.1E-26 1.8E-30 226.3 19.4 221 111-339 79-309 (328)
54 2z66_A Variable lymphocyte rec 99.9 4.1E-26 1.4E-30 225.2 18.3 229 113-345 28-262 (306)
55 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-26 1.5E-30 222.5 17.9 206 162-392 32-239 (285)
56 2z66_A Variable lymphocyte rec 99.9 5.7E-26 2E-30 224.2 17.6 246 142-416 11-263 (306)
57 3zyi_A Leucine-rich repeat-con 99.9 4E-25 1.4E-29 230.4 24.4 235 104-344 68-303 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 8.9E-25 3E-29 227.0 25.8 248 139-416 44-294 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 9.2E-25 3.2E-29 227.7 25.7 250 139-417 55-306 (452)
60 2z80_A TOLL-like receptor 2, v 99.9 2.4E-25 8.3E-30 224.3 20.5 275 185-512 30-315 (353)
61 1wwl_A Monocyte differentiatio 99.9 6.6E-27 2.3E-31 231.4 7.9 248 110-367 40-309 (312)
62 2p1m_B Transport inhibitor res 99.9 3.1E-29 1.1E-33 271.2 -9.8 425 108-539 61-548 (594)
63 1ozn_A Reticulon 4 receptor; N 99.9 5.9E-26 2E-30 221.7 14.0 214 103-320 24-238 (285)
64 3zyj_A Leucine-rich repeat-con 99.9 8.5E-25 2.9E-29 227.1 22.4 235 104-344 57-292 (440)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-23 3.6E-28 225.5 27.9 262 211-540 41-302 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-26 6.5E-31 228.6 6.0 267 214-542 14-283 (317)
67 2o6q_A Variable lymphocyte rec 99.9 2.7E-24 9.3E-29 208.0 21.0 217 66-295 2-218 (270)
68 3o53_A Protein LRIM1, AGAP0063 99.9 6.8E-26 2.3E-30 224.6 8.4 260 115-437 12-272 (317)
69 1wwl_A Monocyte differentiatio 99.9 1.7E-26 5.8E-31 228.4 3.5 266 60-345 21-310 (312)
70 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-23 1.8E-27 220.0 29.6 287 61-423 13-306 (622)
71 2p1m_B Transport inhibitor res 99.9 1.4E-27 4.8E-32 258.3 -8.5 411 116-535 46-519 (594)
72 3oja_A Leucine-rich immune mol 99.9 7E-24 2.4E-28 222.3 14.8 235 139-435 35-270 (487)
73 3oja_A Leucine-rich immune mol 99.9 2.6E-24 8.9E-29 225.6 11.3 238 110-386 31-270 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 7.6E-23 2.6E-27 198.6 18.9 209 138-392 28-238 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 2E-22 6.8E-27 195.6 21.2 212 104-320 21-237 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.5E-21 5.2E-26 188.6 23.6 202 114-320 17-218 (270)
77 3rfs_A Internalin B, repeat mo 99.9 3.7E-22 1.3E-26 193.1 15.7 180 110-294 38-217 (272)
78 3rfs_A Internalin B, repeat mo 99.9 5.7E-22 1.9E-26 191.8 15.9 184 132-320 35-218 (272)
79 3m19_A Variable lymphocyte rec 99.9 1.4E-21 4.7E-26 186.8 17.4 192 67-273 3-194 (251)
80 2ast_B S-phase kinase-associat 99.9 6.5E-24 2.2E-28 212.4 0.5 233 72-317 38-282 (336)
81 1p9a_G Platelet glycoprotein I 99.9 6.6E-21 2.2E-25 185.8 20.9 202 109-319 6-207 (290)
82 1p9a_G Platelet glycoprotein I 99.9 1.8E-20 6E-25 182.8 22.1 177 354-535 31-208 (290)
83 4glp_A Monocyte differentiatio 99.9 1.1E-20 3.8E-25 186.4 17.2 199 162-366 91-306 (310)
84 2xwt_C Thyrotropin receptor; s 99.8 7E-21 2.4E-25 180.5 14.8 178 114-295 32-218 (239)
85 2ast_B S-phase kinase-associat 99.8 2.2E-22 7.6E-27 201.3 4.6 250 115-396 49-311 (336)
86 3goz_A Leucine-rich repeat-con 99.8 4E-22 1.4E-26 201.3 6.3 201 119-320 4-238 (362)
87 3m19_A Variable lymphocyte rec 99.8 5.1E-20 1.7E-24 175.8 20.3 179 114-296 15-193 (251)
88 2ca6_A RAN GTPase-activating p 99.8 1.4E-22 4.7E-27 206.8 2.1 184 354-539 94-320 (386)
89 2xwt_C Thyrotropin receptor; s 99.8 2.1E-20 7E-25 177.2 16.7 197 138-341 31-236 (239)
90 3goz_A Leucine-rich repeat-con 99.8 2.2E-22 7.5E-27 203.2 1.9 261 142-421 2-304 (362)
91 4glp_A Monocyte differentiatio 99.8 2.1E-20 7.3E-25 184.4 14.7 225 113-345 64-308 (310)
92 2ca6_A RAN GTPase-activating p 99.8 4.5E-22 1.5E-26 203.0 2.4 243 103-347 22-319 (386)
93 1h6u_A Internalin H; cell adhe 99.8 5.4E-20 1.9E-24 181.1 17.0 192 111-320 39-230 (308)
94 1h6u_A Internalin H; cell adhe 99.8 1E-19 3.4E-24 179.2 16.9 193 134-343 37-229 (308)
95 2o6s_A Variable lymphocyte rec 99.8 1.2E-19 4.3E-24 167.9 15.3 164 112-283 27-190 (208)
96 4ay9_X Follicle-stimulating ho 99.8 5.9E-19 2E-23 177.2 19.4 229 129-363 23-255 (350)
97 3e6j_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 162.5 17.4 166 59-249 9-174 (229)
98 4ay9_X Follicle-stimulating ho 99.8 3.5E-18 1.2E-22 171.5 20.4 239 141-411 12-256 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 159.9 14.9 155 138-299 28-182 (208)
100 3cvr_A Invasion plasmid antige 99.8 1.8E-18 6.3E-23 182.7 14.7 192 72-300 49-248 (571)
101 3cvr_A Invasion plasmid antige 99.8 9.2E-18 3.2E-22 177.3 17.1 187 307-520 59-252 (571)
102 2v9t_B SLIT homolog 2 protein 99.7 1.9E-17 6.6E-22 154.3 16.3 152 116-271 14-165 (220)
103 1h6t_A Internalin B; cell adhe 99.7 1.4E-17 4.8E-22 162.3 15.4 169 137-320 45-213 (291)
104 2v9t_B SLIT homolog 2 protein 99.7 3.1E-17 1.1E-21 152.9 16.1 151 87-247 15-165 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 3E-17 1E-21 153.0 15.7 154 116-273 14-168 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 4.5E-17 1.5E-21 151.8 16.3 153 87-249 15-168 (220)
107 4ezg_A Putative uncharacterize 99.7 2.1E-17 7.1E-22 151.4 13.7 152 135-294 41-193 (197)
108 3e6j_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 151.3 17.8 153 116-273 22-174 (229)
109 1h6t_A Internalin B; cell adhe 99.7 2.8E-17 9.6E-22 160.2 15.3 173 109-296 42-214 (291)
110 4ezg_A Putative uncharacterize 99.7 2.3E-17 7.8E-22 151.1 13.6 153 110-271 41-194 (197)
111 2xot_A Amphoterin-induced prot 99.7 4.6E-17 1.6E-21 164.0 15.4 175 87-271 22-202 (361)
112 1m9s_A Internalin B; cell inva 99.7 6.8E-17 2.3E-21 172.6 16.2 173 109-296 39-211 (605)
113 2xot_A Amphoterin-induced prot 99.7 7.5E-17 2.6E-21 162.4 15.1 177 116-296 21-203 (361)
114 1m9s_A Internalin B; cell inva 99.7 8.4E-17 2.9E-21 171.9 15.4 171 135-320 40-210 (605)
115 4b8c_D Glucose-repressible alc 99.7 4.2E-18 1.4E-22 186.6 3.0 235 36-292 128-369 (727)
116 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.9E-21 152.7 9.5 168 112-295 18-185 (263)
117 1xeu_A Internalin C; cellular 99.7 3E-16 1E-20 150.5 11.2 168 355-537 20-187 (263)
118 1dce_A Protein (RAB geranylger 99.7 6.2E-19 2.1E-23 187.3 -9.0 196 110-313 346-566 (567)
119 1w8a_A SLIT protein; signaling 99.6 1.6E-16 5.4E-21 144.8 7.5 132 404-540 11-144 (192)
120 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.4E-20 135.6 12.4 133 137-271 23-160 (168)
121 1w8a_A SLIT protein; signaling 99.6 2.5E-15 8.5E-20 136.8 13.5 130 116-249 11-141 (192)
122 1dce_A Protein (RAB geranylger 99.6 9E-19 3.1E-23 186.0 -10.9 120 428-551 442-566 (567)
123 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.9E-20 132.4 10.2 127 138-266 17-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.6 4.2E-15 1.4E-19 132.2 13.0 138 400-541 23-165 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 130.1 9.4 128 161-290 16-148 (149)
126 2wfh_A SLIT homolog 2 protein 99.6 2.4E-14 8.3E-19 130.2 14.1 127 116-247 13-139 (193)
127 2o6r_A Variable lymphocyte rec 99.6 5E-14 1.7E-18 126.4 14.9 111 162-272 28-138 (177)
128 2wfh_A SLIT homolog 2 protein 99.6 4.7E-14 1.6E-18 128.2 14.6 127 141-271 13-139 (193)
129 4b8c_D Glucose-repressible alc 99.6 8.8E-16 3E-20 168.2 3.3 180 113-299 173-358 (727)
130 3sb4_A Hypothetical leucine ri 99.5 5.7E-15 2E-19 146.7 6.5 260 112-384 24-327 (329)
131 2o6r_A Variable lymphocyte rec 99.5 6.9E-14 2.4E-18 125.5 12.7 132 403-539 9-141 (177)
132 3sb4_A Hypothetical leucine ri 99.5 3.7E-14 1.3E-18 140.8 9.6 98 429-528 228-327 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.5 7.8E-14 2.7E-18 125.0 10.5 132 134-271 15-153 (176)
134 4fdw_A Leucine rich hypothetic 99.5 3.8E-12 1.3E-16 129.2 22.7 266 111-413 111-382 (401)
135 4fs7_A Uncharacterized protein 99.5 2E-12 7E-17 131.6 20.7 59 446-506 316-374 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-13 5.8E-18 122.8 9.7 134 157-296 14-154 (176)
137 1ds9_A Outer arm dynein; leuci 99.4 5.5E-16 1.9E-20 142.0 -7.9 110 133-247 43-153 (198)
138 1ds9_A Outer arm dynein; leuci 99.4 1.2E-15 4E-20 139.8 -7.6 149 135-288 15-180 (198)
139 4fs7_A Uncharacterized protein 99.4 2.2E-11 7.6E-16 123.9 22.2 55 446-503 339-393 (394)
140 4fdw_A Leucine rich hypothetic 99.4 4.9E-11 1.7E-15 121.0 23.0 82 233-320 112-193 (401)
141 3g39_A Variable lymphocyte rec 99.4 3.9E-12 1.3E-16 113.0 12.8 106 140-248 11-116 (170)
142 3g39_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 112.8 11.5 108 429-539 11-119 (170)
143 2r9u_A Variable lymphocyte rec 99.4 6E-12 2E-16 112.2 12.5 104 141-247 15-118 (174)
144 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 109.8 12.0 105 429-536 14-119 (174)
145 3un9_A NLR family member X1; l 99.2 3.6E-13 1.2E-17 135.4 -3.4 159 354-512 72-253 (372)
146 3un9_A NLR family member X1; l 99.2 7E-13 2.4E-17 133.3 -3.3 160 113-273 72-254 (372)
147 4gt6_A Cell surface protein; l 99.2 7.1E-09 2.4E-13 105.3 26.3 131 371-534 258-390 (394)
148 4gt6_A Cell surface protein; l 99.2 5.7E-09 1.9E-13 106.0 24.9 104 446-554 284-387 (394)
149 2ifg_A High affinity nerve gro 99.1 3.4E-10 1.1E-14 113.1 11.2 102 143-247 13-116 (347)
150 2ifg_A High affinity nerve gro 99.0 7.6E-10 2.6E-14 110.5 11.2 89 446-535 27-116 (347)
151 2ra8_A Uncharacterized protein 98.9 3.5E-10 1.2E-14 112.6 3.8 187 82-271 106-320 (362)
152 2ra8_A Uncharacterized protein 98.9 4.6E-09 1.6E-13 104.5 8.7 160 370-533 164-341 (362)
153 4h09_A Hypothetical leucine ri 98.8 6.4E-07 2.2E-11 90.3 24.3 150 376-531 192-342 (379)
154 4h09_A Hypothetical leucine ri 98.8 1.2E-06 4E-11 88.3 25.7 75 446-522 282-356 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 4.5E-08 1.5E-12 87.8 3.2 90 446-535 61-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 9E-08 3.1E-12 85.8 1.6 44 132-175 30-78 (185)
157 3e4g_A ATP synthase subunit S, 98.2 3.9E-07 1.3E-11 79.6 2.8 81 429-509 63-150 (176)
158 3e4g_A ATP synthase subunit S, 98.2 8.4E-07 2.9E-11 77.5 4.4 83 187-269 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 4.8E-07 1.6E-11 85.3 2.4 69 471-540 167-238 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.8E-06 6.2E-11 81.3 6.1 79 448-528 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 6.3E-05 2.2E-09 66.9 3.9 88 447-534 67-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00049 1.7E-08 61.1 4.1 109 447-555 38-167 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0058 2E-07 50.5 6.5 56 454-511 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.006 2.1E-07 50.4 5.3 57 477-535 11-68 (130)
165 2lz0_A Uncharacterized protein 46.0 60 0.0021 24.6 6.6 36 158-194 16-51 (100)
166 2lz0_A Uncharacterized protein 41.9 33 0.0011 26.1 4.5 38 468-506 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-66 Score=577.14 Aligned_cols=517 Identities=30% Similarity=0.456 Sum_probs=343.6
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCCCcCcEEcCCCCCCEEEEEcCCCCcCCCCceeee-----------
Q 048827 37 CFEADRLVLQEFKAKILKDTTEILASWM-GKDCCGGDWEGVVCNPATGRVTGLALQRPDRELGMYMIGT----------- 104 (576)
Q Consensus 37 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~c~~~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~----------- 104 (576)
+.++|++||++||+++. ||. .+.+|. +.+|| .|.||.|+ .++|+.+++++.. +.|.
T Consensus 9 ~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C--~w~gv~C~--~~~v~~L~L~~~~------l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPC--TFDGVTCR--DDKVTSIDLSSKP------LNVGFSAVSSSLLSL 76 (768)
T ss_dssp CHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGG--GSTTEEEE--TTEEEEEECTTSC------CCEEHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCc--CCcceEEC--CCcEEEEECCCCC------cCCccCccChhHhcc
Confidence 35789999999999998 666 899997 78999 99999998 6899999999876 2222
Q ss_pred ---------------cCccccCCCCCCEEecCCCCCCccCCcc--cccCCCCCCEEEccCCCCCcCCCccc---------
Q 048827 105 ---------------LPAALGNLHFLEVMVISGMKHITGPIPE--SLSNLTRLTQLILEDNSLEGSIPPGL--------- 158 (576)
Q Consensus 105 ---------------~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~p~~l--------- 158 (576)
+|+.+..+++|++|+|++ +.+.+.+|. .++++++|++|++++|.+.+.+|..+
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSR-NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCS-SEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCC-CcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 224455556666666665 444444444 45555555555555544443333221
Q ss_pred -----------------------------------------cCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCc
Q 048827 159 -----------------------------------------GHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNS 197 (576)
Q Consensus 159 -----------------------------------------~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~ 197 (576)
.++++|++|++++|.+.+.+|. ++++++|++|++++|.
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence 2333444444444444433333 5555555555555555
Q ss_pred ccccCcccccCCCCCCEEEcccCCCcc----------------------cCCccccCC-CCCCEEEccCCcccccCchhh
Q 048827 198 VSGPIPPTFISFLSLQSLDFSFNLLSG----------------------FIPDALVRS-QNLTYIDLSNNQFSGKFPISI 254 (576)
Q Consensus 198 ~~~~~~~~l~~l~~L~~L~l~~n~l~~----------------------~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l 254 (576)
+++..|..+..+++|++|++++|.+++ .+|..+... ++|++|++++|.+++.+|..+
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 555555555555555555555444433 223333222 444444444444444444444
Q ss_pred cCCCCCCeEEeecccCcCCChhh-hcCCCCCcEEEccCCcCccccCcc--------------------------------
Q 048827 255 CGLANLQDLSLSHNQLTGTIPEQ-IGGLRSLNSLKLSEMDSQIRLPII-------------------------------- 301 (576)
Q Consensus 255 ~~l~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~-------------------------------- 301 (576)
+.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 44455555555554444333332 444444444444444333222210
Q ss_pred ------------------ccCCCCCCCEEECcCCCCCCCCCCCcCC-CCCccEEEccCCcCccCCCC-CCCCCCccEEEc
Q 048827 302 ------------------LGRGIPSLLSIDLSYNNLSLGTVPNWIK-DRPLSNVNLAGCKLRGALPK-FTRPDSLSSIDL 361 (576)
Q Consensus 302 ------------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~L 361 (576)
.+..+++|++|++++|.++ +.+|..+. ..+|+.|++++|.+.+.+|. +..+++|++|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS-GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCccc-CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 1222333334444443333 22332222 22555555555555544443 334467777777
Q ss_pred cCCcCCCccchhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCc
Q 048827 362 SNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFS 440 (576)
Q Consensus 362 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 440 (576)
++|.+++.+|..+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+.+|..+...+. |++|++++|.+.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS--LIWLDLNTNLFN 551 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT--CCEEECCSSEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC--CCEEECCCCccC
Confidence 77777777777777777777777777777766655 677778888888888888878877776655 888898888887
Q ss_pred ccCCC-----------------------------------------------------------------------CCCC
Q 048827 441 GEIPE-----------------------------------------------------------------------FTEG 449 (576)
Q Consensus 441 ~~~~~-----------------------------------------------------------------------~~~~ 449 (576)
+.+|. +..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 76664 2234
Q ss_pred CCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEc
Q 048827 450 LSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANF 529 (576)
Q Consensus 450 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 529 (576)
++|+.|++++|++++.+|..++.++.|+.|+|++|.+++.+|..++.+++|++|+|++|+++|.+|..+.++++|++|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceecCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCC
Q 048827 530 RANRLCGEIPQGRPYSIFPGSAYAHNLCLCGKPLPPCRGKN 570 (576)
Q Consensus 530 ~~n~l~g~iP~~~~~~~l~~~~~~~n~~l~~~~~~~~~~~~ 570 (576)
++|+++|.||..+++.++...++.|||.+||.|+++|...+
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence 99999999999999999999999999999999999886443
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.8e-54 Score=465.41 Aligned_cols=457 Identities=22% Similarity=0.332 Sum_probs=308.9
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCC-------CCCCC-CCCCCCCCc---CcEEcCCCCCCEEEEEcCCCCcCCCCceee
Q 048827 35 PICFEADRLVLQEFKAKILKDTTEI-------LASWM-GKDCCGGDW---EGVVCNPATGRVTGLALQRPDRELGMYMIG 103 (576)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~w~-~~~~c~~~w---~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~ 103 (576)
.+...+|+.||.++++++.++.+.. ..+|. +.+|| .| .||.|+.. ++|+.|+|+++. +.|
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c--~w~~~~GV~C~~~-~~V~~L~L~~~~------l~g 95 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD--MWGAQPGVSLNSN-GRVTGLSLEGFG------ASG 95 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG--GTTCCTTEEECTT-CCEEEEECTTSC------CEE
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcc--cccCCCCeEEcCC-CCEEEEEecCcc------cCC
Confidence 3455689999999999987665543 34898 78999 99 99999854 899999999998 899
Q ss_pred ecCccccCCCCCCEEecCCCCCC-----cc------CCc---------------------cccc----------------
Q 048827 104 TLPAALGNLHFLEVMVISGMKHI-----TG------PIP---------------------ESLS---------------- 135 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~-----~~------~~~---------------------~~l~---------------- 135 (576)
.+|+.++++++|++|+|++|+.. .+ .+| ..+.
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~ 175 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCC
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccc
Confidence 99999999999999999985320 11 111 1111
Q ss_pred ---CCCCCCEEEcc--CCCCCcCCCccccCCCCCCEEEccCCcCCCC-----------------CCccCC--CCCCCcEE
Q 048827 136 ---NLTRLTQLILE--DNSLEGSIPPGLGHLSLLQTLSLGGNRLKGP-----------------IPPSLG--NLRNLLVI 191 (576)
Q Consensus 136 ---~l~~L~~L~l~--~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~-----------------~p~~l~--~l~~L~~L 191 (576)
....++.+.+. +|.+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|
T Consensus 176 ~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 176 KKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 01111222221 456665 677777777777777777777754 777777 77777777
Q ss_pred EccCCcccccCcccccCCCCCCEEEcccCC-Ccc-cCCccccCC------CCCCEEEccCCcccccCch--hhcCCCCCC
Q 048827 192 NLGKNSVSGPIPPTFISFLSLQSLDFSFNL-LSG-FIPDALVRS------QNLTYIDLSNNQFSGKFPI--SICGLANLQ 261 (576)
Q Consensus 192 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~ 261 (576)
++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .++.+++|+
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 777777777777777777777777777776 776 667666655 77777777777777 6666 677777777
Q ss_pred eEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCC-CCEEECcCCCCCCCCCCCcCCCC---CccEEE
Q 048827 262 DLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPS-LLSIDLSYNNLSLGTVPNWIKDR---PLSNVN 337 (576)
Q Consensus 262 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~~---~L~~L~ 337 (576)
+|++++|.+.|.+| .++.+++|++|++++|.+. .+|. .+..+++ |++|++++|.++ .+|..+... +|+.|+
T Consensus 334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp EEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEE
T ss_pred EEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEE
Confidence 77777777776666 6777777777777777666 4444 3555666 777777777665 455544332 466666
Q ss_pred ccCCcCccCCCCC-C-------CCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEcc
Q 048827 338 LAGCKLRGALPKF-T-------RPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLH 409 (576)
Q Consensus 338 l~~~~~~~~~~~~-~-------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls 409 (576)
+++|.+.+..|.. . ..++|++|++++|.+++..+..+..+++|++|++++|.+. .++.
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~------------- 474 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPK------------- 474 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCS-------------
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCH-------------
Confidence 6666655544432 1 2345555666655555433333444555555555555554 2221
Q ss_pred CCcCccccchhhhhhc-----cCCcCEEEccCCcCcccCCC-CC--CCCCCcEEEccCCcCCccChhhhhcCccCCeeeC
Q 048827 410 SNQITGSLSSIINNRT-----SSFLEALDVSGNHFSGEIPE-FT--EGLSLKVLNIGSNKITGHIPSSISNLIELEMLDI 481 (576)
Q Consensus 410 ~n~~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~-~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 481 (576)
..+.... .+.|++|++++|.+. .+|. +. .+++|+.|++++|++++ +|..+..+++|++|+|
T Consensus 475 ---------~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 475 ---------NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp ---------SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred ---------HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 1111000 012677777777776 3444 44 77788888888888876 7777778888888888
Q ss_pred ------ccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcce
Q 048827 482 ------QRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 482 ------s~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
++|.+.+.+|..+..+++|++|++++|++ +.+|..+. ++|++|++++|++.
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 45777778888888888888888888888 47777655 78888888888776
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.9e-51 Score=441.28 Aligned_cols=466 Identities=19% Similarity=0.185 Sum_probs=405.2
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
...++.|+++++. +.+..|..|.++++|++|++++ +.+.+..|..|+++++|++|++++|.+.+..|..|+++
T Consensus 32 ~~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 32 PNSTECLEFSFNV------LPTIQNTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CTTCCEEECTTCC------CSEECTTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CCcCcEEEccCCc------cCcCChhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 4588999999988 7777788999999999999999 67887889999999999999999999998889999999
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCC--EE
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLT--YI 239 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L 239 (576)
++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+ +|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 9999999999999976678899999999999999999875544555699999999999999988888999999999 89
Q ss_pred EccCCcccccCchhhcCC---------------------------------------------------CCCCeEEeecc
Q 048827 240 DLSNNQFSGKFPISICGL---------------------------------------------------ANLQDLSLSHN 268 (576)
Q Consensus 240 ~l~~n~~~~~~~~~l~~l---------------------------------------------------~~L~~L~L~~~ 268 (576)
++++|.+++..|..+... .+|++|++++|
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred ecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 999999887666544321 16788888888
Q ss_pred cCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCC-CcCCCCCccEEEccCCcCccCC
Q 048827 269 QLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVP-NWIKDRPLSNVNLAGCKLRGAL 347 (576)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~ 347 (576)
.+.+..+..|..+++|++|++++|.+. .+|. .+..+++|++|++++|.+. ...| .+...++|++|++++|.+.+.+
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCCh-hhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCccccc
Confidence 888777777999999999999999887 5555 5688999999999999987 3333 3445569999999999988665
Q ss_pred CC--CCCCCCccEEEccCCcCCCcc--chhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchh-h
Q 048827 348 PK--FTRPDSLSSIDLSNNLLTDGI--SSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSI-I 421 (576)
Q Consensus 348 ~~--~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~-~ 421 (576)
+. +..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+..+.. +
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 54 566799999999999999866 77889999999999999999877665 888999999999999998776543 5
Q ss_pred hhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCcc---ChhhhhcCccCCeeeCccCcCCccCcccccCC
Q 048827 422 NNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGH---IPSSISNLIELEMLDIQRNQIAGTIPTSLGLL 497 (576)
Q Consensus 422 ~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l 497 (576)
...+. |++|++++|.+.+..+. +..+++|++|++++|++.+. .+..+..+++|++|++++|.+++..|..+..+
T Consensus 422 ~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 422 QNLHL--LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTCTT--CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hCccc--CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 55444 99999999999988777 88899999999999999863 33678999999999999999998889999999
Q ss_pred CCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCCC-CCCCCCCcccccCCCCCCC
Q 048827 498 SKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG-RPYSIFPGSAYAHNLCLCG 560 (576)
Q Consensus 498 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~-~~~~~l~~~~~~~n~~l~~ 560 (576)
++|++|++++|++++..|..+.+++.| +|++++|++++.+|.. ..+++++.++++|||..|.
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999999999999999999999999999 9999999999777765 6678999999999998874
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-51 Score=454.31 Aligned_cols=457 Identities=21% Similarity=0.268 Sum_probs=338.8
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCCCCCC------CCCC--CCCCc------------CcEEcCCCCCCEEEEEcCCC
Q 048827 34 APICFEADRLVLQEFKAKILKDTTEILASWM------GKDC--CGGDW------------EGVVCNPATGRVTGLALQRP 93 (576)
Q Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~------~~~~--c~~~w------------~~v~c~~~~~~v~~l~l~~~ 93 (576)
+.++..+|+.||++||+++. ++ +|. ..++ | .| .||.|+. .++|+.|+|+++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C--~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~ 333 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSL--NWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF 333 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCC--SCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT
T ss_pred ccccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCcc--ccccccccccccCcCceEecC-CCCEEEEECccC
Confidence 34566789999999999996 33 665 2356 7 99 9999985 799999999999
Q ss_pred CcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccc---------------------------------------
Q 048827 94 DRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESL--------------------------------------- 134 (576)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l--------------------------------------- 134 (576)
. +.|.+|+.++++++|++|+|+.++.+.|..|...
T Consensus 334 ~------L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 334 G------AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp C------CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred C------CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 8 8999999999999999999944365555422110
Q ss_pred ------------cCCCCCCEEEccC--CCCCcCCCccccCCCCCCEEEccCCcCCC-----------------CCCccCC
Q 048827 135 ------------SNLTRLTQLILED--NSLEGSIPPGLGHLSLLQTLSLGGNRLKG-----------------PIPPSLG 183 (576)
Q Consensus 135 ------------~~l~~L~~L~l~~--~~~~~~~p~~l~~l~~L~~L~L~~~~~~~-----------------~~p~~l~ 183 (576)
.....++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+|..++
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 1112233333333 67775 88899999999999999999997 2888887
Q ss_pred --CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCC-Ccc-cCCccccCCC-------CCCEEEccCCcccccCch
Q 048827 184 --NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNL-LSG-FIPDALVRSQ-------NLTYIDLSNNQFSGKFPI 252 (576)
Q Consensus 184 --~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~~~~~~~~ 252 (576)
++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..++ +|++|++++|.++ .+|.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 99999999999999888999999999999999999998 887 7787666554 9999999999998 7888
Q ss_pred --hhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCC-CCEEECcCCCCCCCCCCCcCC
Q 048827 253 --SICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPS-LLSIDLSYNNLSLGTVPNWIK 329 (576)
Q Consensus 253 --~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~ 329 (576)
.++++++|++|++++|.+. .+| .++.+++|+.|++++|.+. .+|. .+..+++ |++|++++|.++ .+|..+.
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~--~lp~~~~ 639 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK--YIPNIFN 639 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC--SCCSCCC
T ss_pred hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH-HHhhccccCCEEECcCCCCC--cCchhhh
Confidence 8999999999999999988 777 7889999999999999888 6665 5677888 999999999887 6776665
Q ss_pred CC---CccEEEccCCcCccCCCCCC------CCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCC
Q 048827 330 DR---PLSNVNLAGCKLRGALPKFT------RPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFP 400 (576)
Q Consensus 330 ~~---~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 400 (576)
.. +|+.|++++|.+.+.+|.+. ..++|++|++++|.++...+..+..+++|+.|++++|.+..........
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 54 48999999998887766543 3358889999999888644444557888888888888877332222211
Q ss_pred CCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CC--CCCCCcEEEccCCcCCccChhhhhcCccCC
Q 048827 401 DGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FT--EGLSLKVLNIGSNKITGHIPSSISNLIELE 477 (576)
Q Consensus 401 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~--~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 477 (576)
.. ...... +.|+.|++++|.+. .+|. +. .+++|+.|+|++|++++ +|..+..+++|+
T Consensus 720 ~~----------------~~l~nl--~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~ 779 (876)
T 4ecn_A 720 KD----------------GNYKNT--YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK 779 (876)
T ss_dssp TT----------------SCCTTG--GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCC
T ss_pred cc----------------cccccc--CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCC
Confidence 10 000000 01555555555554 3333 33 55666666666666664 566666666666
Q ss_pred eeeCcc------CcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCccee
Q 048827 478 MLDIQR------NQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCG 536 (576)
Q Consensus 478 ~L~Ls~------n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g 536 (576)
.|+|++ |.+.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|++..
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 666654 666777777777778888888888877 57776654 578888888887763
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.5e-51 Score=453.85 Aligned_cols=443 Identities=32% Similarity=0.461 Sum_probs=344.3
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
..+++.|+++++. +.+.+|. +..+++|++|++++ +.+++.+|..++.+++|++|++++|.+.+.+|.. .+
T Consensus 199 l~~L~~L~Ls~n~------l~~~~~~-l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l 268 (768)
T 3rgz_A 199 CVNLEFLDVSSNN------FSTGIPF-LGDCSALQHLDISG-NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268 (768)
T ss_dssp CTTCCEEECCSSC------CCSCCCB-CTTCCSCCEEECCS-SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CC
T ss_pred CCcCCEEECcCCc------CCCCCcc-cccCCCCCEEECcC-CcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--cc
Confidence 4567788888776 5555655 77777777777777 5666667777777777777777777766555443 55
Q ss_pred CCCCEEEccCCcCCCCCCccCCCC-CCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCcc-ccCCCCCCEE
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNL-RNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDA-LVRSQNLTYI 239 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 239 (576)
++|++|++++|.+++.+|..+.+. ++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|.. +..+++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 555555555555555555555443 55555555555555555555555555555555555554444433 4445555555
Q ss_pred EccCC-------------------------cccccCchhhcC--CCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCC
Q 048827 240 DLSNN-------------------------QFSGKFPISICG--LANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEM 292 (576)
Q Consensus 240 ~l~~n-------------------------~~~~~~~~~l~~--l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 292 (576)
++++| .+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 55554 444444444444 567777888888877788888999999999999999
Q ss_pred cCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCC-CCCccEEEccCCcCccCCCC-CCCCCCccEEEccCCcCCCcc
Q 048827 293 DSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIK-DRPLSNVNLAGCKLRGALPK-FTRPDSLSSIDLSNNLLTDGI 370 (576)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~ 370 (576)
.+.+..|. .+..+++|++|++++|.+. +.+|..+. ..+|++|++++|.+.+.+|. +..+++|++|++++|.+++.+
T Consensus 429 ~l~~~~p~-~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 429 YLSGTIPS-SLGSLSKLRDLKLWLNMLE-GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp EEESCCCG-GGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccCcccH-HHhcCCCCCEEECCCCccc-CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 99888877 7888999999999999998 66776554 45999999999999988776 556799999999999999999
Q ss_pred chhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhc------------------------
Q 048827 371 SSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRT------------------------ 425 (576)
Q Consensus 371 ~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~------------------------ 425 (576)
|.++..+++|++|++++|.+.+..+. +..+++|+.|++++|++.+.+|..+....
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 99999999999999999999988876 88999999999999999988887653310
Q ss_pred --------------------------------------------cCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCC
Q 048827 426 --------------------------------------------SSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSN 460 (576)
Q Consensus 426 --------------------------------------------~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n 460 (576)
.+.|++|++++|.++|.+|. +..+++|+.|+|++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 13588999999999999998 999999999999999
Q ss_pred cCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCc-ceec
Q 048827 461 KITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANR-LCGE 537 (576)
Q Consensus 461 ~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~g~ 537 (576)
++++.+|..++++++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|+. ..+..+....+.+|+ ++|.
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 999999999999999999999999999999999999999999999999999999975 455666777788886 6653
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-49 Score=432.65 Aligned_cols=462 Identities=19% Similarity=0.177 Sum_probs=395.8
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
..+++.|+++++. +.+..+..|.++++|++|++++ +.+++..|..|+++++|++|++++|.+++..|..|+++
T Consensus 31 ~~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~-n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 31 PSSTKNIDLSFNP------LKILKSYSFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp CTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCcCEEECCCCC------cCEeChhhccCCccCcEEeCCC-CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 5689999999988 7777778999999999999999 67887778899999999999999999997779999999
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccc-cCcccccCCCCCCEEEcccCCCcccCCccccCCCCCC---
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSG-PIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLT--- 237 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--- 237 (576)
++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+++|+
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 999999999999997777889999999999999999986 5699999999999999999999988787777666554
Q ss_pred -EEEccCCcccccCchhhcCCCCCCeEEeecccCc---------------------------------------------
Q 048827 238 -YIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT--------------------------------------------- 271 (576)
Q Consensus 238 -~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~--------------------------------------------- 271 (576)
+|++++|.+++..+..+.. .+|++|++++|.+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred ceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 8999999888555444443 37888888877653
Q ss_pred -------------CCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEc
Q 048827 272 -------------GTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNL 338 (576)
Q Consensus 272 -------------~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 338 (576)
+..|. +..+++|+.|+++++.+.. ++ .+..+++|++|++++|.+ ..+|.+ ...+|++|++
T Consensus 263 l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~--~l~~~~~L~~L~l~~n~l--~~lp~~-~l~~L~~L~l 335 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE--DVPKHFKWQSLSIIRCQL--KQFPTL-DLPFLKSLTL 335 (606)
T ss_dssp EEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC--CCCTTCCCSEEEEESCCC--SSCCCC-CCSSCCEEEE
T ss_pred Hhheeccccccccccccc-cccCCCCCEEEecCccchh-hh--hccccccCCEEEcccccC--cccccC-CCCccceeec
Confidence 12222 5556777888888777643 33 567788999999999988 477766 7779999999
Q ss_pred cCCcCccCCCCCCCCCCccEEEccCCcCCCc--cchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccc
Q 048827 339 AGCKLRGALPKFTRPDSLSSIDLSNNLLTDG--ISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGS 416 (576)
Q Consensus 339 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 416 (576)
++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+....+..+++|++|++++|++.+.
T Consensus 336 ~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 336 TMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp ESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred cCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc
Confidence 999665544 455779999999999999876 37889999999999999999988777799999999999999999988
Q ss_pred cc-hhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCc-cChhhhhcCccCCeeeCccCcCCccCccc
Q 048827 417 LS-SIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITG-HIPSSISNLIELEMLDIQRNQIAGTIPTS 493 (576)
Q Consensus 417 ~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 493 (576)
.+ ..+...+. |++|++++|.+.+..|. +..+++|++|++++|++++ .+|..+..+++|++|++++|.+++..|..
T Consensus 415 ~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 415 TEFSAFLSLEK--LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TTTTTTTTCTT--CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cChhhhhcccc--CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 77 45555544 99999999999988877 8899999999999999997 47888999999999999999999999999
Q ss_pred ccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCCC-CCCC-CCCcccccCCCCCCCCC
Q 048827 494 LGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG-RPYS-IFPGSAYAHNLCLCGKP 562 (576)
Q Consensus 494 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~-~~~~-~l~~~~~~~n~~l~~~~ 562 (576)
+..+++|++|++++|++++.+|..+.++++|++|++++|++. .+|.. ..++ +++.+++++||..|.-+
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999999988999999999999999999999 78876 4444 69999999999998654
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-47 Score=422.07 Aligned_cols=470 Identities=19% Similarity=0.188 Sum_probs=292.6
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
..+++.|+++++. +.+..+..|.++++|++|++++ +.+++..|..|+++++|++|++++|.+++..+..|+++
T Consensus 24 ~~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 24 PTNITVLNLTHNQ------LRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CTTCSEEECCSSC------CCCCCGGGGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEECCCCC------CCCcCHHHHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 4578888988877 5555556688888888888887 66776777778888888888888888774433457788
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCcccc--CCCCCCEE
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALV--RSQNLTYI 239 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L 239 (576)
++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|++|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 8888888888888766666777888888888888877777777777777777777777777655544432 33555555
Q ss_pred EccCCcccccCch---------------------------------------------------hhcCCC--CCCeEEee
Q 048827 240 DLSNNQFSGKFPI---------------------------------------------------SICGLA--NLQDLSLS 266 (576)
Q Consensus 240 ~l~~n~~~~~~~~---------------------------------------------------~l~~l~--~L~~L~L~ 266 (576)
++++|.+++..|. ++..++ +|++|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 5555555443333 333332 25555555
Q ss_pred cccCcCCChhhhcCCCCCcEEEccCCcCccccCccccC---------------------------------CCCCCCEEE
Q 048827 267 HNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGR---------------------------------GIPSLLSID 313 (576)
Q Consensus 267 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~---------------------------------~~~~L~~L~ 313 (576)
+|.+.+..+..++.+++|++|++++|.+.+..+. .+. .+++|++|+
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 5555544455555566666666665555443332 223 334444444
Q ss_pred CcCCCCCCCCCCC-cCCCCCccEEEccCCcCccCC-CC--CCC--CCCccEEEccCCcCCCccchhhhCCCCCCeEEccC
Q 048827 314 LSYNNLSLGTVPN-WIKDRPLSNVNLAGCKLRGAL-PK--FTR--PDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSN 387 (576)
Q Consensus 314 l~~~~l~~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~--~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 387 (576)
+++|.++ +..+. +....+|++|++++|.+.... +. +.. .++|+.|++++|.+++..+..|..+++|+.|++++
T Consensus 336 l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 336 MEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp CCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 4444443 11111 112223444444333221100 00 000 02344444455555555555566666666666666
Q ss_pred CcceeeCCC--CCCCCCCCEEEccCCcCccc--------------------------cchhhhhhccCCcCEEEccCCcC
Q 048827 388 NQLKFDVSE--IRFPDGLASIDLHSNQITGS--------------------------LSSIINNRTSSFLEALDVSGNHF 439 (576)
Q Consensus 388 n~~~~~~~~--~~~~~~L~~L~ls~n~~~~~--------------------------~~~~~~~~~~~~L~~L~l~~n~~ 439 (576)
|.+.+..+. +..+++|++|++++|++.+. .|..+..... |++|++++|.+
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~--L~~L~Ls~N~l 492 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN--LTILDLSNNNI 492 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT--CCEEECCSSCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC--CCEEECCCCCC
Confidence 666554432 55555555555555554433 3333333333 77777777777
Q ss_pred cccCCC-CCCCCCCcEEEccCCcCCccCh--------hhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcC
Q 048827 440 SGEIPE-FTEGLSLKVLNIGSNKITGHIP--------SSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSL 510 (576)
Q Consensus 440 ~~~~~~-~~~~~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l 510 (576)
.+..+. +..+++|++|++++|++++..+ ..+.++++|++|+|++|.+....+..|..+++|++|++++|++
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence 765555 6677777777777777764311 2367777888888888887733334578888888888888888
Q ss_pred cccccccccCCCCCCEEEccCCcceecCCCC-C-CCCCCCcccccCCCCCCCCC
Q 048827 511 TGKIPTSLLGIRGLRHANFRANRLCGEIPQG-R-PYSIFPGSAYAHNLCLCGKP 562 (576)
Q Consensus 511 ~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~-~-~~~~l~~~~~~~n~~l~~~~ 562 (576)
++..+..+.++++|++|++++|++++..|.. . .+++++.+++++||..|.-+
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 8655556778888888888888888655543 2 57889999999999998533
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.4e-48 Score=418.80 Aligned_cols=445 Identities=20% Similarity=0.180 Sum_probs=370.5
Q ss_pred eecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccC
Q 048827 103 GTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSL 182 (576)
Q Consensus 103 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l 182 (576)
..+|..+.. ++++|++++ +.+++..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..|
T Consensus 25 ~~iP~~l~~--~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 25 NEIPGTLPN--STECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp SSCCTTSCT--TCCEEECTT-CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred ccCcCCCCC--cCcEEEccC-CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 456665543 789999999 77887778999999999999999999998889999999999999999999998889999
Q ss_pred CCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCC-
Q 048827 183 GNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQ- 261 (576)
Q Consensus 183 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~- 261 (576)
+++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 9999999999999999987788899999999999999999975545555699999999999999988899999999999
Q ss_pred -eEEeecccCcCCChhhhcCC---------------------------------------------------CCCcEEEc
Q 048827 262 -DLSLSHNQLTGTIPEQIGGL---------------------------------------------------RSLNSLKL 289 (576)
Q Consensus 262 -~L~L~~~~~~~~~~~~l~~l---------------------------------------------------~~L~~L~L 289 (576)
.|++++|.+.+..|..+... .+|+.|++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 89999999887665544321 14666666
Q ss_pred cCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCC-CCccEEEccCCcCccCCC-CCCCCCCccEEEccCCcCC
Q 048827 290 SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKD-RPLSNVNLAGCKLRGALP-KFTRPDSLSSIDLSNNLLT 367 (576)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~ 367 (576)
++|.+....+. .+..+++|++|++++|.++ .+|..+.. .+|++|++++|.+.+..+ .+..+++|++|++++|.+.
T Consensus 262 ~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 262 QKHYFFNISSN-TFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp TTCCCSSCCTT-TTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred ecCccCccCHH-HhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 66666554443 5778888999999998887 56655443 489999999998887655 3556688999999998887
Q ss_pred Cccch-hhhCCCCCCeEEccCCcceeeC---CCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccC
Q 048827 368 DGISS-FFTNMSSLQNIKLSNNQLKFDV---SEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEI 443 (576)
Q Consensus 368 ~~~~~-~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 443 (576)
+.++. .+..+++|++|++++|.+.+.. ..+..+++|++|++++|++.+..+..+...+. |++|++++|.+.+..
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ--LELLDLAFTRLKVKD 416 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT--CSEEECTTCCEECCT
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc--CCeEECCCCcCCCcc
Confidence 55544 4788899999999999887653 34788899999999999988877777766554 999999999988776
Q ss_pred CC--CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCcc---CcccccCCCCCCEEeCCCCcCcccccccc
Q 048827 444 PE--FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGT---IPTSLGLLSKLQWLDVSVNSLTGKIPTSL 518 (576)
Q Consensus 444 ~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 518 (576)
+. +..+++|++|++++|.+.+..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 54 77888999999999999888888899999999999999998762 33568889999999999999998888889
Q ss_pred cCCCCCCEEEccCCcceecCCCC-CCCCCCCcccccCCC
Q 048827 519 LGIRGLRHANFRANRLCGEIPQG-RPYSIFPGSAYAHNL 556 (576)
Q Consensus 519 ~~l~~L~~L~l~~n~l~g~iP~~-~~~~~l~~~~~~~n~ 556 (576)
..+++|++|++++|++.+.+|.. ...+.+ .+++++|.
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 99999999999999999888876 667777 88888884
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9e-48 Score=431.63 Aligned_cols=473 Identities=21% Similarity=0.196 Sum_probs=378.6
Q ss_pred CCCCCCcCcEEcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCC-cccccCCCCCCEEEc
Q 048827 67 DCCGGDWEGVVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPI-PESLSNLTRLTQLIL 145 (576)
Q Consensus 67 ~~c~~~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~~L~~L~l 145 (576)
||....|..|.+ ...+++.|+++++. +.+..+..|..+++|++|++++|... +.+ |..|+++++|++|++
T Consensus 10 dcs~~~L~~vP~--lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 10 FYRFCNLTQVPQ--VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EESCCCSSCCCS--SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEEC
T ss_pred EccCCCCCCCCC--CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEEC
Confidence 333346777776 56799999999988 77888999999999999999995443 444 788999999999999
Q ss_pred cCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCcc--CCCCCCCcEEEccCCcccccCc-ccccCCCCCCEEEcccCCC
Q 048827 146 EDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPS--LGNLRNLLVINLGKNSVSGPIP-PTFISFLSLQSLDFSFNLL 222 (576)
Q Consensus 146 ~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~--l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l 222 (576)
++|.+.+..|..|+++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 999999888999999999999999999999766665 8999999999999999987655 5799999999999999999
Q ss_pred cccCCccccCC--CCCCEEEccCCcccccCchhhcCCCC------CCeEEeecccCcCCChhhhcC--------------
Q 048827 223 SGFIPDALVRS--QNLTYIDLSNNQFSGKFPISICGLAN------LQDLSLSHNQLTGTIPEQIGG-------------- 280 (576)
Q Consensus 223 ~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~L~~~~~~~~~~~~l~~-------------- 280 (576)
++..+..+..+ ++|++|++++|.+.+..|..++.+++ |++|++++|.+.+..+..+..
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 98888888877 89999999999998888777766665 899999998776554433321
Q ss_pred ------------------------CCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCC-cCCCCCccE
Q 048827 281 ------------------------LRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPN-WIKDRPLSN 335 (576)
Q Consensus 281 ------------------------l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~ 335 (576)
.++|+.|++++|.+....+. .+..+++|++|++++|.+. ...+. +....+|++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQV 318 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCE
Confidence 25788888888877766554 6778888888888888887 33333 344458888
Q ss_pred EEccCCcCccCCCC-CCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCc
Q 048827 336 VNLAGCKLRGALPK-FTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQIT 414 (576)
Q Consensus 336 L~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~ 414 (576)
|++++|.+.+..+. +..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+. ..+++|+.|++++|++.
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI----HFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC----SSCCSCSEEEEESCCCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc----cCCCCcchhccCCCCcc
Confidence 88888888766554 55668888888888888887777788888888888888877632 22444555555544443
Q ss_pred --------------------cccch-hhhhhccCCcCEEEccCCcCcccCCC--CCCCCCCcEEEccCCcCC-----ccC
Q 048827 415 --------------------GSLSS-IINNRTSSFLEALDVSGNHFSGEIPE--FTEGLSLKVLNIGSNKIT-----GHI 466 (576)
Q Consensus 415 --------------------~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~L~~n~l~-----~~~ 466 (576)
+.... .+... ++|++|++++|.+.+..+. +..+++|+.|++++|.+. +..
T Consensus 395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 395 TLPKINLTANLIHLSENRLENLDILYFLLRV--PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCCCCTTCCEEECCSCCCCSSTTHHHHTTC--TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccccccccceeecccCccccCchhhhhhcC--CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 32111 11222 4489999999988865544 566789999999999886 344
Q ss_pred hhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCCCCCCCC
Q 048827 467 PSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSI 546 (576)
Q Consensus 467 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~~~~~~ 546 (576)
+..|.++++|++|+|++|.+++..|..+..+++|++|+|++|++++..|..+. ++|+.|++++|++.+.+|.. +.+
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~ 548 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVS 548 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSS
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCC
Confidence 56788999999999999999988888899999999999999999976666555 89999999999999999976 779
Q ss_pred CCcccccCCCCCCC
Q 048827 547 FPGSAYAHNLCLCG 560 (576)
Q Consensus 547 l~~~~~~~n~~l~~ 560 (576)
++.++++|||..|.
T Consensus 549 L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 549 LSVLDITHNKFICE 562 (844)
T ss_dssp CCEEEEEEECCCCS
T ss_pred cCEEEecCCCcccc
Confidence 99999999999883
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-47 Score=411.30 Aligned_cols=440 Identities=18% Similarity=0.146 Sum_probs=379.5
Q ss_pred eeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCcc
Q 048827 102 IGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPS 181 (576)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~ 181 (576)
...+|..+. +++++|++++ +.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..
T Consensus 23 l~~ip~~~~--~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 23 LSKVPDDIP--SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp CSSCCTTSC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred cccCCCCCC--CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 346666554 7999999999 7788777889999999999999999999878889999999999999999999888999
Q ss_pred CCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcc-cCCccccCCCCCCEEEccCCcccccCchhhcCCCCC
Q 048827 182 LGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSG-FIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANL 260 (576)
Q Consensus 182 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 260 (576)
|+++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..++.+++|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 9999999999999999998777889999999999999999986 579999999999999999999998888888777666
Q ss_pred C----eEEeecccCcCCChhhhcCCCCCcEEEccCCcCcc----------------------------------------
Q 048827 261 Q----DLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQI---------------------------------------- 296 (576)
Q Consensus 261 ~----~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~---------------------------------------- 296 (576)
+ +|++++|.+.+..+..+.. .+|++|++++|.+.+
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 5 8999999998655555544 489999998886531
Q ss_pred ------------------ccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccE
Q 048827 297 ------------------RLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSS 358 (576)
Q Consensus 297 ------------------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 358 (576)
..+ .+..+++|++|+++++.+. .+|.+....+|++|++++|.+ +.+|.+ .+++|++
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~--~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~ 332 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIV--KFHCLANVSAMSLAGVSIK--YLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKS 332 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGG--SCGGGTTCSEEEEESCCCC--CCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCE
T ss_pred hhccHhheecccccccccccc--ccccCCCCCEEEecCccch--hhhhccccccCCEEEcccccC-cccccC-CCCccce
Confidence 111 1455788999999999886 566555556999999999999 677777 7899999
Q ss_pred EEccCCcCCCccchhhhCCCCCCeEEccCCcceeeC---CCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEcc
Q 048827 359 IDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDV---SEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVS 435 (576)
Q Consensus 359 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~ 435 (576)
|++++|...+.. .+..+++|++|++++|.+.+.. ..+..+++|++|++++|.+.+. +..+..... |++|+++
T Consensus 333 L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~--L~~L~l~ 407 (606)
T 3vq2_A 333 LTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEE--LQHLDFQ 407 (606)
T ss_dssp EEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTT--CCEEECT
T ss_pred eeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCC--CCeeECC
Confidence 999999665534 5678999999999999998662 3377889999999999998764 344444444 9999999
Q ss_pred CCcCcccCC--CCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCc-cCcccccCCCCCCEEeCCCCcCcc
Q 048827 436 GNHFSGEIP--EFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAG-TIPTSLGLLSKLQWLDVSVNSLTG 512 (576)
Q Consensus 436 ~n~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~ 512 (576)
+|.+.+..+ .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|++++
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 999998877 38899999999999999999999999999999999999999997 478899999999999999999999
Q ss_pred cccccccCCCCCCEEEccCCcceecCCCC-CCCCCCCcccccCCC
Q 048827 513 KIPTSLLGIRGLRHANFRANRLCGEIPQG-RPYSIFPGSAYAHNL 556 (576)
Q Consensus 513 ~~p~~l~~l~~L~~L~l~~n~l~g~iP~~-~~~~~l~~~~~~~n~ 556 (576)
..|..+.++++|++|++++|++.+.+|.. ..+++++.+++++|.
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 88999999999999999999999888876 778899999999995
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-46 Score=404.52 Aligned_cols=442 Identities=22% Similarity=0.231 Sum_probs=279.2
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
..+++.|+++++. +.+..+..|..+++|++|++++ +.+++..+..|+++++|++|++++|.+++..|..|+++
T Consensus 27 ~~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 27 PFSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CSSCCEEECCSCC------CCEECTTTTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cccccEEEccCCc------cCccChhHhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 5578999999988 6777778899999999999999 56777777889999999999999999997777889999
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccc-cCcccccCCCCCCEEEcccCCCcccCCccccCCCCC----
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSG-PIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNL---- 236 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---- 236 (576)
++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 999999999999986555579999999999999999986 468999999999999999999998888888888888
Q ss_pred CEEEccCCcccccCchhhcCCCCCCeEEeecccC----------------------------------------------
Q 048827 237 TYIDLSNNQFSGKFPISICGLANLQDLSLSHNQL---------------------------------------------- 270 (576)
Q Consensus 237 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~---------------------------------------------- 270 (576)
+++++++|.+++..+..+... +|++|++.+|..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 899999999987777766655 788888877632
Q ss_pred ------------cCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEc
Q 048827 271 ------------TGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNL 338 (576)
Q Consensus 271 ------------~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 338 (576)
.+..+..+..+++|++|++++|.+. .++. .+..+ +|++|++++|.+. .+|. ....+|+.|++
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~~~-~L~~L~l~~n~~~--~l~~-~~l~~L~~L~l 332 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSYNF-GWQHLELVNCKFG--QFPT-LKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB-CCSCC-CCSEEEEESCBCS--SCCB-CBCSSCCEEEE
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh-hhccC-CccEEeeccCccc--ccCc-ccccccCEEeC
Confidence 2223333444445555555544443 2222 22333 5555555555443 3332 12334555555
Q ss_pred cCCcCccCCCCCCCCCCccEEEccCCcCCCcc--chhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccc
Q 048827 339 AGCKLRGALPKFTRPDSLSSIDLSNNLLTDGI--SSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGS 416 (576)
Q Consensus 339 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 416 (576)
.+|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+.+..+++|++|++++|.+.+.
T Consensus 333 ~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 333 TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp ESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred cCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence 55544433333 33355555555555554432 3444555555555555555544333344455555555555555443
Q ss_pred cc-hhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCC-ccChhhhhcCccCCeeeCccCcCCccCccc
Q 048827 417 LS-SIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKIT-GHIPSSISNLIELEMLDIQRNQIAGTIPTS 493 (576)
Q Consensus 417 ~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 493 (576)
.+ ..+...+. |++|++++|.+.+..+. +..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..
T Consensus 412 ~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 412 SEFSVFLSLRN--LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp TTSCTTTTCTT--CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cchhhhhcCCC--CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 33 12222222 55555555555544443 444555555555555554 234444555555555555555555444555
Q ss_pred ccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCC
Q 048827 494 LGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQ 540 (576)
Q Consensus 494 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~ 540 (576)
+..+++|++|++++|++++..|..+.++++|++|++++|++.+..|.
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 55555555555555555544444455555555555555555554443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-46 Score=403.08 Aligned_cols=446 Identities=20% Similarity=0.208 Sum_probs=383.4
Q ss_pred eecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccC
Q 048827 103 GTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSL 182 (576)
Q Consensus 103 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l 182 (576)
..+|..+. +++++|++++ +.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|
T Consensus 20 ~~ip~~l~--~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 20 YKIPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp SSCCSSSC--SSCCEEECCS-CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCcc--ccccEEEccC-CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 34565443 5799999999 77877777899999999999999999997777889999999999999999997777899
Q ss_pred CCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcc-cCCccccCCCCCCEEEccCCcccccCchhhcCCCCC-
Q 048827 183 GNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSG-FIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANL- 260 (576)
Q Consensus 183 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L- 260 (576)
.++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..++.+++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 999999999999999987666679999999999999999987 479999999999999999999998888888888888
Q ss_pred ---CeEEeecccCcCCChhhhcCCCCCcEEEccCCcC-------------------------------------------
Q 048827 261 ---QDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS------------------------------------------- 294 (576)
Q Consensus 261 ---~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~------------------------------------------- 294 (576)
+.|++++|.+.+..+..+... +|++|++++|..
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 899999999987777766655 788888877621
Q ss_pred ---------------ccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEE
Q 048827 295 ---------------QIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSI 359 (576)
Q Consensus 295 ---------------~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 359 (576)
.+..+. .+..+++|++|++++|.+. .+|.++...+|++|++++|.+. .+|. ..+++|++|
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~--~l~~~~~~~~L~~L~l~~n~~~-~l~~-~~l~~L~~L 330 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIE--RVKDFSYNFGWQHLELVNCKFG-QFPT-LKLKSLKRL 330 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEESCEEC--SCCBCCSCCCCSEEEEESCBCS-SCCB-CBCSSCCEE
T ss_pred ccchhhhhhhcchhhhhhchh-hhcCcCcccEEEecCccch--hhhhhhccCCccEEeeccCccc-ccCc-ccccccCEE
Confidence 111122 4456789999999999887 5777666559999999999987 4444 456999999
Q ss_pred EccCCcCCCccchhhhCCCCCCeEEccCCcceeeC---CCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccC
Q 048827 360 DLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDV---SEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSG 436 (576)
Q Consensus 360 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~---~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~ 436 (576)
++++|.+.+..+. ..+++|++|++++|.+.+.. ..+..+++|++|++++|.+.+..+. +..... |++|++++
T Consensus 331 ~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~--L~~L~l~~ 405 (570)
T 2z63_A 331 TFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ--LEHLDFQH 405 (570)
T ss_dssp EEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTT--CCEEECTT
T ss_pred eCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCC--CCEEEccC
Confidence 9999998876654 77899999999999987653 3377889999999999999876665 444444 99999999
Q ss_pred CcCcccCCC--CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCC-ccCcccccCCCCCCEEeCCCCcCccc
Q 048827 437 NHFSGEIPE--FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIA-GTIPTSLGLLSKLQWLDVSVNSLTGK 513 (576)
Q Consensus 437 n~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~-~~~p~~l~~l~~L~~L~L~~n~l~~~ 513 (576)
|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++.
T Consensus 406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 999987763 889999999999999999999999999999999999999997 57999999999999999999999988
Q ss_pred ccccccCCCCCCEEEccCCcceecCCCC-CCCCCCCcccccCCCCCCCCC
Q 048827 514 IPTSLLGIRGLRHANFRANRLCGEIPQG-RPYSIFPGSAYAHNLCLCGKP 562 (576)
Q Consensus 514 ~p~~l~~l~~L~~L~l~~n~l~g~iP~~-~~~~~l~~~~~~~n~~l~~~~ 562 (576)
.|..+.++++|++|++++|++.+..|.. ..+++++.+++++||.-|.-|
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 8999999999999999999999777665 778999999999999887533
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-44 Score=397.05 Aligned_cols=447 Identities=22% Similarity=0.214 Sum_probs=302.9
Q ss_pred eecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccC
Q 048827 103 GTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSL 182 (576)
Q Consensus 103 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l 182 (576)
..+|..+. +++++|++++ +.+++..+..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp SSCCSCSC--TTCSEEECCS-SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccccC--CCCcEEECCC-CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 45666654 7999999999 77887777789999999999999999998888899999999999999999995555579
Q ss_pred CCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhc--CCCCC
Q 048827 183 GNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISIC--GLANL 260 (576)
Q Consensus 183 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L 260 (576)
+++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence 9999999999999999987778999999999999999999998889999999999999999999987777664 56899
Q ss_pred CeEEeecccCcCCChhhhcCCC---------------------------CCcEEEccCCcCccccCccccCCCC--CCCE
Q 048827 261 QDLSLSHNQLTGTIPEQIGGLR---------------------------SLNSLKLSEMDSQIRLPIILGRGIP--SLLS 311 (576)
Q Consensus 261 ~~L~L~~~~~~~~~~~~l~~l~---------------------------~L~~L~L~~~~~~~~~~~~~~~~~~--~L~~ 311 (576)
++|++++|.+.+..|..+..++ +|+.|++++|.+.+..+. .+..++ +|++
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~ 252 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTM 252 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCE
T ss_pred cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCE
Confidence 9999999998877766665443 344455555544443333 233332 3666
Q ss_pred EECcCCCCCCCCCCCc-CCCCCccEEEccCCcCccCCCC-CCCCC---------------------------------Cc
Q 048827 312 IDLSYNNLSLGTVPNW-IKDRPLSNVNLAGCKLRGALPK-FTRPD---------------------------------SL 356 (576)
Q Consensus 312 L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~---------------------------------~L 356 (576)
|++++|.++ ...+.. ....+|++|++++|.+.+..+. +.+++ +|
T Consensus 253 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 253 LDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp EECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred EECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 666666655 222222 2333666666666655544432 23334 44
Q ss_pred cEEEccCCcCCCccchhhhCCCCCCeEEccCCcceee--CCC-CC--CCCCCCEEEccCCcCccccchhhhhhccCCcCE
Q 048827 357 SSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFD--VSE-IR--FPDGLASIDLHSNQITGSLSSIINNRTSSFLEA 431 (576)
Q Consensus 357 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~-~~--~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~ 431 (576)
++|++++|.+++..+..|.++++|++|++++|.+... ... +. ..++|+.|++++|++.+..+..+..... |++
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~ 409 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH--LEV 409 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT--CCE
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC--CCE
Confidence 4444444444444444444444444444444432110 000 11 1134555555555555554444444333 666
Q ss_pred EEccCCcCcccCCC--CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCC--ccCcccccCCCCCCEEeCCC
Q 048827 432 LDVSGNHFSGEIPE--FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIA--GTIPTSLGLLSKLQWLDVSV 507 (576)
Q Consensus 432 L~l~~n~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~--~~~p~~l~~l~~L~~L~L~~ 507 (576)
|++++|.+.+.++. +..+++|++|++++|++.+..+..|..+++|+.|++++|.+. +.+|..+..+++|++|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 66666666555543 556666666666666666555666666666666666666654 45667777777777788877
Q ss_pred CcCcccccccccCCCCCCEEEccCCcceec----CCC-----CCCCCCCCcccccCCC
Q 048827 508 NSLTGKIPTSLLGIRGLRHANFRANRLCGE----IPQ-----GRPYSIFPGSAYAHNL 556 (576)
Q Consensus 508 n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~----iP~-----~~~~~~l~~~~~~~n~ 556 (576)
|++++..+..+.++++|++|++++|++.+- +|. ...+++++.+++++|.
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 777766666677777788888888777642 121 1455677777777773
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-44 Score=386.75 Aligned_cols=457 Identities=19% Similarity=0.173 Sum_probs=347.2
Q ss_pred CCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCC
Q 048827 83 GRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLS 162 (576)
Q Consensus 83 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 162 (576)
.+++.|+++++. +.+..|..|..+++|++|++++ +.+++..|..|+++++|++|++++|.+++..|..+++++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCC-CCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 467888888877 6667777888888888888888 667777777888888888888888888866555688888
Q ss_pred CCCEEEccCCcCCC-CCCccCCCCCCCcEEEccCCcccccC-cccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEE
Q 048827 163 LLQTLSLGGNRLKG-PIPPSLGNLRNLLVINLGKNSVSGPI-PPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYID 240 (576)
Q Consensus 163 ~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 240 (576)
+|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..+.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 88888888888875 35667888888888888888744344 35788888888888888888888888888888888888
Q ss_pred ccCCcccccCchh-hcCCCCCCeEEeecccCcCCC--h-hhhcCCCCCcEEEccCCcCccccCcc---ccCCCCCCCEEE
Q 048827 241 LSNNQFSGKFPIS-ICGLANLQDLSLSHNQLTGTI--P-EQIGGLRSLNSLKLSEMDSQIRLPII---LGRGIPSLLSID 313 (576)
Q Consensus 241 l~~n~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~--~-~~l~~l~~L~~L~L~~~~~~~~~~~~---~~~~~~~L~~L~ 313 (576)
+++|.+. .+|.. +..+++|++|++++|.+.+.. + .....+++|+.|+++++.+.+..+.. ....+++|+.++
T Consensus 179 l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 179 LHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred cccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 8888876 34444 356888888888888887532 1 12335678888888888765543221 335678888888
Q ss_pred CcCCCCCCC-CC-----CCcCCCCCccEEEccCCcCccCCC--CC----CCCCCccEEEccCCcCCCccchhh-hCCCCC
Q 048827 314 LSYNNLSLG-TV-----PNWIKDRPLSNVNLAGCKLRGALP--KF----TRPDSLSSIDLSNNLLTDGISSFF-TNMSSL 380 (576)
Q Consensus 314 l~~~~l~~~-~~-----~~~~~~~~L~~L~l~~~~~~~~~~--~~----~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 380 (576)
+++|.+... .+ .......+++.|.+.++.+..... .. ...++|++|++++|.+.. +|..+ ..+++|
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L 336 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSL 336 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccc
Confidence 888865411 11 112233488888888886643211 11 112689999999999876 55554 679999
Q ss_pred CeEEccCCcceeeC----CCCCCCCCCCEEEccCCcCccccc--hhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCc
Q 048827 381 QNIKLSNNQLKFDV----SEIRFPDGLASIDLHSNQITGSLS--SIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLK 453 (576)
Q Consensus 381 ~~L~L~~n~~~~~~----~~~~~~~~L~~L~ls~n~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~ 453 (576)
++|++++|.+.+.. ..+..+++|++|++++|++++..+ ..+..... |++|++++|.+.+ +|. +..+++|+
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~--L~~L~Ls~N~l~~-lp~~~~~~~~L~ 413 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN--LTSLDISRNTFHP-MPDSCQWPEKMR 413 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT--CCEEECTTCCCCC-CCSCCCCCTTCC
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC--CCEEECCCCCCcc-CChhhccccccc
Confidence 99999999998653 236788999999999999987543 33444444 9999999999984 555 88889999
Q ss_pred EEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCc
Q 048827 454 VLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANR 533 (576)
Q Consensus 454 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 533 (576)
+|++++|+++. +|..+ .++|++|++++|.+++.+ ..+++|++|++++|+++ .+|. ...+++|++|++++|+
T Consensus 414 ~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 414 FLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQ 484 (549)
T ss_dssp EEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSC
T ss_pred EEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCc
Confidence 99999999884 44333 368999999999998643 57889999999999998 7776 4678999999999999
Q ss_pred ceecCCCC-CCCCCCCcccccCCCCCCC
Q 048827 534 LCGEIPQG-RPYSIFPGSAYAHNLCLCG 560 (576)
Q Consensus 534 l~g~iP~~-~~~~~l~~~~~~~n~~l~~ 560 (576)
+.+.+|.. ..+++++.+++++||..|.
T Consensus 485 l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 485 LKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred cCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 99877765 7788999999999998774
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-44 Score=398.87 Aligned_cols=444 Identities=22% Similarity=0.204 Sum_probs=360.4
Q ss_pred eecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCC-CccccCCCCCCEEEccCCcCCCCCCcc
Q 048827 103 GTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSI-PPGLGHLSLLQTLSLGGNRLKGPIPPS 181 (576)
Q Consensus 103 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~L~~~~~~~~~p~~ 181 (576)
..+|. -.+++++|+|++ +.+++..|..|+++++|++|++++|...+.+ |..|+++++|++|++++|.+.+..|..
T Consensus 17 ~~vP~---lp~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCCCS---SCTTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCC---CCCCcCEEECCC-CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 45665 457999999999 7788888999999999999999999665555 778999999999999999999888999
Q ss_pred CCCCCCCcEEEccCCcccccCccc--ccCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCcccccCchhhcCC-
Q 048827 182 LGNLRNLLVINLGKNSVSGPIPPT--FISFLSLQSLDFSFNLLSGFIP-DALVRSQNLTYIDLSNNQFSGKFPISICGL- 257 (576)
Q Consensus 182 l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l- 257 (576)
|.++++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+ ..+.++++|++|++++|.+++..+..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 999999999999999999866655 9999999999999999987655 579999999999999999998888888877
Q ss_pred -CCCCeEEeecccCcCCChhhhcCCCC------CcEEEccCCcCccccCcccc---------------------------
Q 048827 258 -ANLQDLSLSHNQLTGTIPEQIGGLRS------LNSLKLSEMDSQIRLPIILG--------------------------- 303 (576)
Q Consensus 258 -~~L~~L~L~~~~~~~~~~~~l~~l~~------L~~L~L~~~~~~~~~~~~~~--------------------------- 303 (576)
++|+.|++++|.+.+..+..++.+++ |+.|++++|.+....+....
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 89999999999999888877776665 99999999976544332111
Q ss_pred --------CC--CCCCCEEECcCCCCCCCCCCCcC-CCCCccEEEccCCcCccCCCC-CCCCCCccEEEccCCcCCCccc
Q 048827 304 --------RG--IPSLLSIDLSYNNLSLGTVPNWI-KDRPLSNVNLAGCKLRGALPK-FTRPDSLSSIDLSNNLLTDGIS 371 (576)
Q Consensus 304 --------~~--~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~ 371 (576)
.. .++|++|++++|.+. ...+..+ ...+|+.|++++|.+.+..+. +.++++|++|++++|.+++..+
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred CCCChhhhhccccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 11 368999999999887 3344444 445999999999999877664 6667999999999999998888
Q ss_pred hhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCc----------
Q 048827 372 SFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFS---------- 440 (576)
Q Consensus 372 ~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---------- 440 (576)
..|..+++|+.|++++|.+....+. +..+++|++|++++|.+++... .+.|+.|++++|.+.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------~~~L~~L~l~~N~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------IPSIPDIFLSGNKLVTLPKINLTAN 404 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------CCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-------CCCcchhccCCCCcccccccccccc
Confidence 8999999999999999998766554 7889999999999999875332 122555555555544
Q ss_pred ----------ccCCC--CCCCCCCcEEEccCCcCCccChh-hhhcCccCCeeeCccCcCC-----ccCcccccCCCCCCE
Q 048827 441 ----------GEIPE--FTEGLSLKVLNIGSNKITGHIPS-SISNLIELEMLDIQRNQIA-----GTIPTSLGLLSKLQW 502 (576)
Q Consensus 441 ----------~~~~~--~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~-----~~~p~~l~~l~~L~~ 502 (576)
+.... +..+++|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..+..+++|++
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 22111 34678888888888888754332 3556788899999998886 344566888899999
Q ss_pred EeCCCCcCcccccccccCCCCCCEEEccCCcceecCCCCCCCCCCCcccccCCCCCCC
Q 048827 503 LDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAHNLCLCG 560 (576)
Q Consensus 503 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~~~~~~l~~~~~~~n~~l~~ 560 (576)
|+|++|++++..|..+.++++|+.|++++|++++-.|.. -.++++.+++++|. +.+
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~~~L~~L~Ls~N~-l~~ 540 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQ-LLA 540 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC-CCSCCCEEEEEEEC-CCC
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCCccChhh-hhccccEEECCCCc-CCC
Confidence 999999999888888999999999999999999644444 33899999999994 443
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.1e-46 Score=402.91 Aligned_cols=432 Identities=17% Similarity=0.239 Sum_probs=326.1
Q ss_pred CCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCC------Cc------CCCccccCCCCCCEEEccCCcCCCCCCc
Q 048827 113 HFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSL------EG------SIPPGLGHLSLLQTLSLGGNRLKGPIPP 180 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------~~------~~p~~l~~l~~L~~L~L~~~~~~~~~p~ 180 (576)
.+++.|+|++ +.+.|.+|..++++++|++|++++|.+ .+ .+|... +..|+ ++++++.+.+..|.
T Consensus 81 ~~V~~L~L~~-~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEG-FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTT-SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecC-cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 4678899998 778999999999999999999999975 22 233322 34455 56666655555444
Q ss_pred cCCC-------------------CCCCcEEEcc--CCcccccCcccccCCCCCCEEEcccCCCccc--------------
Q 048827 181 SLGN-------------------LRNLLVINLG--KNSVSGPIPPTFISFLSLQSLDFSFNLLSGF-------------- 225 (576)
Q Consensus 181 ~l~~-------------------l~~L~~L~l~--~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-------------- 225 (576)
.+.. ...++.+.+. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 4431 1122222222 456666 677777777888888887777764
Q ss_pred ---CCcccc--CCCCCCEEEccCCcccccCchhhcCCCCCCeEEeeccc-CcC-CChhhhcCC------CCCcEEEccCC
Q 048827 226 ---IPDALV--RSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQ-LTG-TIPEQIGGL------RSLNSLKLSEM 292 (576)
Q Consensus 226 ---~~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~-~~~-~~~~~l~~l------~~L~~L~L~~~ 292 (576)
+|+.+. .+++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 777777 77788888888877777777777777888888888777 776 677766665 77888888877
Q ss_pred cCccccCc-cccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCC-ccEEEccCCcCCCcc
Q 048827 293 DSQIRLPI-ILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDS-LSSIDLSNNLLTDGI 370 (576)
Q Consensus 293 ~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~ 370 (576)
.+. .+|. ..+..+++|++|++++|.++ +.+|.+....+|++|++++|.+......+..+++ |++|++++|.++ .+
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~-g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCE-EECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCc-cchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-cc
Confidence 777 4443 24667778888888888776 5666444444788888888887744444555577 888888888887 46
Q ss_pred chhhhCCC--CCCeEEccCCcceeeCCC-CC-------CCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCc
Q 048827 371 SSFFTNMS--SLQNIKLSNNQLKFDVSE-IR-------FPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFS 440 (576)
Q Consensus 371 ~~~~~~l~--~L~~L~L~~n~~~~~~~~-~~-------~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 440 (576)
|..+...+ +|++|++++|.+.+..+. +. .+++|++|++++|.+....+..+...+. |++|++++|.+.
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~--L~~L~Ls~N~l~ 470 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP--LSSINLMGNMLT 470 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC--CSEEECCSSCCS
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC--CCEEECCCCCCC
Confidence 66666544 788888888888765554 44 6678999999999998544444444444 999999999999
Q ss_pred ccCCC-CCC--------CCCCcEEEccCCcCCccChhhhh--cCccCCeeeCccCcCCccCcccccCCCCCCEEeC----
Q 048827 441 GEIPE-FTE--------GLSLKVLNIGSNKITGHIPSSIS--NLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDV---- 505 (576)
Q Consensus 441 ~~~~~-~~~--------~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L---- 505 (576)
.+|. ... +++|+.|++++|+++ .+|..+. .+++|++|+|++|++.+ +|..+..+++|++|++
T Consensus 471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred -CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 5554 322 239999999999999 7888887 99999999999999997 9999999999999999
Q ss_pred --CCCcCcccccccccCCCCCCEEEccCCcceecCCCCCCCCCCCcccccCCCCCC
Q 048827 506 --SVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAHNLCLC 559 (576)
Q Consensus 506 --~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~~~~~~l~~~~~~~n~~l~ 559 (576)
++|++.+.+|..+.++++|++|++++|++ +.||.. .+++++.+++++||..|
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 56888899999999999999999999999 799987 33899999999999887
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.5e-43 Score=387.17 Aligned_cols=351 Identities=17% Similarity=0.224 Sum_probs=277.6
Q ss_pred CcccccCcccccCCCCCCEEEcccCCCcc-----------------cCCcccc--CCCCCCEEEccCCcccccCchhhcC
Q 048827 196 NSVSGPIPPTFISFLSLQSLDFSFNLLSG-----------------FIPDALV--RSQNLTYIDLSNNQFSGKFPISICG 256 (576)
Q Consensus 196 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~ 256 (576)
|.+++ +|..+.++++|++|++++|.+++ .+|+.++ .+++|++|++++|.+.+.+|..+++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 66666 67778888888888888888877 3777766 8888888888888887788888888
Q ss_pred CCCCCeEEeeccc-CcC-CChhhhcCCC-------CCcEEEccCCcCccccCc-cccCCCCCCCEEECcCCCCCCCCCCC
Q 048827 257 LANLQDLSLSHNQ-LTG-TIPEQIGGLR-------SLNSLKLSEMDSQIRLPI-ILGRGIPSLLSIDLSYNNLSLGTVPN 326 (576)
Q Consensus 257 l~~L~~L~L~~~~-~~~-~~~~~l~~l~-------~L~~L~L~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~ 326 (576)
+++|++|++++|+ +++ .+|..++.++ +|++|++++|.+. .+|. ..+..+++|++|++++|.++ .+|.
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEA 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cchh
Confidence 8888888888887 776 6776665554 8888888888877 5553 35677888888888888876 6665
Q ss_pred cCCCCCccEEEccCCcCccCCCCCCCCCC-ccEEEccCCcCCCccchhhhCCC--CCCeEEccCCcceeeCCCCC-----
Q 048827 327 WIKDRPLSNVNLAGCKLRGALPKFTRPDS-LSSIDLSNNLLTDGISSFFTNMS--SLQNIKLSNNQLKFDVSEIR----- 398 (576)
Q Consensus 327 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~----- 398 (576)
+....+|+.|++++|.+......+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|.+.+..+.+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 55555888888888888733334555677 889999988888 4677666654 48899999998876655432
Q ss_pred -CCCCCCEEEccCCcCccccchhh-hhhccCCcCEEEccCCcCcccCCC-CCC--------CCCCcEEEccCCcCCccCh
Q 048827 399 -FPDGLASIDLHSNQITGSLSSII-NNRTSSFLEALDVSGNHFSGEIPE-FTE--------GLSLKVLNIGSNKITGHIP 467 (576)
Q Consensus 399 -~~~~L~~L~ls~n~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~-~~~--------~~~L~~L~L~~n~l~~~~~ 467 (576)
..++|+.|++++|.+.. +|..+ ..... |+.|++++|.+. .+|. ... +++|+.|+|++|+++ .+|
T Consensus 670 ~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~--L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQK-FPTELFATGSP--ISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp CCCCCEEEEECCSSCCCS-CCHHHHHTTCC--CSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred ccCCCcCEEEccCCcCCc-cCHHHHccCCC--CCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 44589999999999984 45443 34444 999999999998 5554 322 238999999999999 788
Q ss_pred hhhh--cCccCCeeeCccCcCCccCcccccCCCCCCEEeCCC------CcCcccccccccCCCCCCEEEccCCcceecCC
Q 048827 468 SSIS--NLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSV------NSLTGKIPTSLLGIRGLRHANFRANRLCGEIP 539 (576)
Q Consensus 468 ~~l~--~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~------n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP 539 (576)
..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |++.+.+|..+.++++|+.|++++|++ +.||
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred HHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 8887 99999999999999996 899999999999999976 888889999999999999999999999 8999
Q ss_pred CCCCCCCCCcccccCCCCCC
Q 048827 540 QGRPYSIFPGSAYAHNLCLC 559 (576)
Q Consensus 540 ~~~~~~~l~~~~~~~n~~l~ 559 (576)
.. .+++|+.+++++|+...
T Consensus 823 ~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 823 EK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp SC-CCSSSCEEECCSCTTCE
T ss_pred Hh-hcCCCCEEECCCCCCCc
Confidence 97 33799999999998653
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-44 Score=378.99 Aligned_cols=447 Identities=19% Similarity=0.208 Sum_probs=287.8
Q ss_pred EEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCC
Q 048827 86 TGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQ 165 (576)
Q Consensus 86 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 165 (576)
+.++++++. +. .+|..+. ++|++|++++ +.+++..|..|.++++|++|++++|.+++..|..|+++++|+
T Consensus 3 ~~l~ls~n~------l~-~ip~~~~--~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNG------LI-HVPKDLS--QKTTILNISQ-NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSC------CS-SCCCSCC--TTCSEEECCS-SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecCCCC------cc-ccccccc--ccccEEECCC-CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 356777766 33 5776665 7888888888 667766667888888888888888888876678888888888
Q ss_pred EEEccCCcCCCCCCccCCCCCCCcEEEccCCcccc-cCcccccCCCCCCEEEcccCCCcccCCccccCCCCC--CEEEcc
Q 048827 166 TLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSG-PIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNL--TYIDLS 242 (576)
Q Consensus 166 ~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~ 242 (576)
+|++++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|+++
T Consensus 73 ~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp EEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred EEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 8888888888 56655 78888888888888876 467888888888888888888875 346666777 888888
Q ss_pred CCcc--cccCchhhcCCC-CCCeEEeecccCcCCCh-hhhcCCCCCcEEEccCCc-------CccccCccccCCCCCCCE
Q 048827 243 NNQF--SGKFPISICGLA-NLQDLSLSHNQLTGTIP-EQIGGLRSLNSLKLSEMD-------SQIRLPIILGRGIPSLLS 311 (576)
Q Consensus 243 ~n~~--~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~~~-------~~~~~~~~~~~~~~~L~~ 311 (576)
+|.+ .+..|..+..+. ....+++.+|.+.+.++ ..+..+++|+.+++++|. +.+.++ .+..+++|++
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~ 224 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSN 224 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhh
Confidence 8888 666677666554 22344555565554433 234566677777776664 333332 3455666666
Q ss_pred EECcCCCCCCCCC---CCcCCCCCccEEEccCCcCccCCCCC------CCCCCccEEEccCCcCCCccc-hhhhCC---C
Q 048827 312 IDLSYNNLSLGTV---PNWIKDRPLSNVNLAGCKLRGALPKF------TRPDSLSSIDLSNNLLTDGIS-SFFTNM---S 378 (576)
Q Consensus 312 L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~~-~~~~~l---~ 378 (576)
|+++++.++...+ +......+|++|++++|.+.+.+|.. ..+++|+.+++++|.+ . +| ..+..+ .
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~-~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-G-FPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-C-SCTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-e-cchhhhhcccccC
Confidence 6666665441111 11111236667777776666555542 3446666666666666 2 33 333333 4
Q ss_pred CCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcc--cCCC-CCCCCCCcEE
Q 048827 379 SLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSG--EIPE-FTEGLSLKVL 455 (576)
Q Consensus 379 ~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~-~~~~~~L~~L 455 (576)
+|+.|++++|.+.... ....+++|++|++++|++.+.+|..+...+. |++|++++|.+.+ .+|. +..+++|++|
T Consensus 303 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTE--LETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS--CCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred ceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCC--CCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 5666666666654221 1245666666666666666655555544433 6666666666664 3333 5566666677
Q ss_pred EccCCcCCccChh-hhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcc
Q 048827 456 NIGSNKITGHIPS-SISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRL 534 (576)
Q Consensus 456 ~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 534 (576)
++++|++++.+|. .+..+++|++|++++|.+++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 7776666654444 355666666777776666666655543 56666777766666 5666666666677777777666
Q ss_pred eecCCCC--CCCCCCCcccccCCCCCC
Q 048827 535 CGEIPQG--RPYSIFPGSAYAHNLCLC 559 (576)
Q Consensus 535 ~g~iP~~--~~~~~l~~~~~~~n~~l~ 559 (576)
. .+|.. ..+++++.+++++||.-|
T Consensus 457 ~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 457 K-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C-ccCHHHhccCCcccEEECcCCCCcc
Confidence 6 45553 445566666666666555
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.4e-41 Score=364.93 Aligned_cols=461 Identities=21% Similarity=0.193 Sum_probs=330.2
Q ss_pred CCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCC
Q 048827 83 GRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLS 162 (576)
Q Consensus 83 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 162 (576)
..++.|+|+++. +.+..+..|..+++|++|+|++ +.+++..+.+|+++++|++|+|++|++++..+..|.+++
T Consensus 52 ~~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeCCC------CCCCCHHHHhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 467777777776 5555556777788888888877 566655566777778888888888777754445677778
Q ss_pred CCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccc-cCcccccCCCCCCEEEcccCCCcccCCccccCCCCC----C
Q 048827 163 LLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSG-PIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNL----T 237 (576)
Q Consensus 163 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~ 237 (576)
+|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..+..+.++ .
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 88888888887775555567777888888888777764 356677777788888888877776666666544333 3
Q ss_pred EEEccCCcccccCchhhcCCCCCCeEEeecccCcCC-ChhhhcCCCCCcEEEc---------------------------
Q 048827 238 YIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGT-IPEQIGGLRSLNSLKL--------------------------- 289 (576)
Q Consensus 238 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L--------------------------- 289 (576)
.++++.|.++...+..+ ....++.+++.+|..... .+..+..++.++...+
T Consensus 205 ~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp EEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 66777777764333332 333445555555533211 1122223333332222
Q ss_pred ------------------------------cCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEcc
Q 048827 290 ------------------------------SEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLA 339 (576)
Q Consensus 290 ------------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 339 (576)
..+...... .+.....++.|++.++.+. .++. .....|+.+.+.
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~--~~~~-~~l~~L~~l~l~ 357 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFG--QFPT-LKLKSLKRLTFT 357 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEESCEES--SCCC-CBCTTCCEEEEE
T ss_pred hhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhccccccc--CcCc-ccchhhhhcccc
Confidence 221111110 1233445666666666554 1111 123366777777
Q ss_pred CCcCccCCCCCCCCCCccEEEccCCcCCC--ccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCcccc
Q 048827 340 GCKLRGALPKFTRPDSLSSIDLSNNLLTD--GISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSL 417 (576)
Q Consensus 340 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 417 (576)
.+..... +....+++|+.|++++|.+.. ..+..+..+.+|+.+++..+........+..+++|+.++++.+......
T Consensus 358 ~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 358 SNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp SCCSCCB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred cccCCCC-cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 7665432 334456899999999998764 4556677889999999999998888778889999999999998877665
Q ss_pred ch-hhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCC-ccChhhhhcCccCCeeeCccCcCCccCcccc
Q 048827 418 SS-IINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKIT-GHIPSSISNLIELEMLDIQRNQIAGTIPTSL 494 (576)
Q Consensus 418 ~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l 494 (576)
+. .+..... ++.+++++|.+.+..+. +..++.++.|++++|++. +..|..|..+++|++|+|++|++.+..|..|
T Consensus 437 ~~~~~~~l~~--l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 437 EFSVFLSLRN--LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp SSCTTTTCTT--CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccc--cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 53 3333333 99999999999988777 788899999999999854 4567889999999999999999999899999
Q ss_pred cCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCCC-CCC-CCCCcccccCCCCCCC
Q 048827 495 GLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG-RPY-SIFPGSAYAHNLCLCG 560 (576)
Q Consensus 495 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~-~~~-~~l~~~~~~~n~~l~~ 560 (576)
..+++|++|+|++|++++..|..+.++++|++|++++|++.+.+|.. ..+ .+++.+++++||.-|.
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999888889999999999999999999888886 333 6899999999999884
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-42 Score=367.73 Aligned_cols=442 Identities=18% Similarity=0.201 Sum_probs=361.3
Q ss_pred eecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccC
Q 048827 103 GTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSL 182 (576)
Q Consensus 103 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l 182 (576)
..+|+.+. ++|++|++++ +.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp SSCCSCCC--TTCCEEECCS-SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred ccccccCC--CCccEEECcC-CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 35666554 7999999999 67887778899999999999999999998888899999999999999999997777779
Q ss_pred CCCCCCcEEEccCCcccc-cCcccccCCCCCCEEEcccCCCcccCC-ccccCCCCCCEEEccCCcccccCchhhcCCCCC
Q 048827 183 GNLRNLLVINLGKNSVSG-PIPPTFISFLSLQSLDFSFNLLSGFIP-DALVRSQNLTYIDLSNNQFSGKFPISICGLANL 260 (576)
Q Consensus 183 ~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 260 (576)
+++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 999999999999999986 356789999999999999998544554 689999999999999999999999999999999
Q ss_pred CeEEeecccCcCCChhh-hcCCCCCcEEEccCCcCcccc--CccccCCCCCCCEEECcCCCCCCCC---CCCc-CCCCCc
Q 048827 261 QDLSLSHNQLTGTIPEQ-IGGLRSLNSLKLSEMDSQIRL--PIILGRGIPSLLSIDLSYNNLSLGT---VPNW-IKDRPL 333 (576)
Q Consensus 261 ~~L~L~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~---~~~~-~~~~~L 333 (576)
++|++++|.+. ..+.. +..+++|++|++++|.+.+.. +......+++|++|++++|.++... ++.. ....+|
T Consensus 175 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 175 HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred ceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 99999999986 44544 457899999999999987642 2224456889999999999775211 1111 223489
Q ss_pred cEEEccCCcCccCC-------CCCCCCCCccEEEccCCcCCCc-----cchhhhCCCCCCeEEccCCcceeeCCCC-CCC
Q 048827 334 SNVNLAGCKLRGAL-------PKFTRPDSLSSIDLSNNLLTDG-----ISSFFTNMSSLQNIKLSNNQLKFDVSEI-RFP 400 (576)
Q Consensus 334 ~~L~l~~~~~~~~~-------~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~ 400 (576)
+.+++++|.+.+.. ..+...++++.|++.++.+... .+..+...++|+.|++++|.+......+ ..+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 99999999876532 2234558999999999887652 2233445678999999999987333333 468
Q ss_pred CCCCEEEccCCcCccccchh---hhhhccCCcCEEEccCCcCcccCC--C-CCCCCCCcEEEccCCcCCccChhhhhcCc
Q 048827 401 DGLASIDLHSNQITGSLSSI---INNRTSSFLEALDVSGNHFSGEIP--E-FTEGLSLKVLNIGSNKITGHIPSSISNLI 474 (576)
Q Consensus 401 ~~L~~L~ls~n~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 474 (576)
++|++|++++|++.+.++.. +... ++|++|++++|.+.+..+ . +..+++|++|++++|+++ .+|..+..++
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAW--PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSS--TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred ccccEEEccCCccccccccchhhhhcc--ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 99999999999999876543 2333 349999999999986532 2 778899999999999999 6888899999
Q ss_pred cCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCCCCCCCCCCcccccC
Q 048827 475 ELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAH 554 (576)
Q Consensus 475 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~~~~~~l~~~~~~~ 554 (576)
+|++|++++|.+. .+|..+ .++|++|++++|++++.+ ..+++|++|++++|++. .||....+++++.+++++
T Consensus 411 ~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 411 KMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISR 482 (549)
T ss_dssp TCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCS
T ss_pred cccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCC
Confidence 9999999999998 455444 369999999999999643 57899999999999998 899887889999999999
Q ss_pred CCCCCC
Q 048827 555 NLCLCG 560 (576)
Q Consensus 555 n~~l~~ 560 (576)
|. +-+
T Consensus 483 N~-l~~ 487 (549)
T 2z81_A 483 NQ-LKS 487 (549)
T ss_dssp SC-CCC
T ss_pred Cc-cCC
Confidence 94 544
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.4e-42 Score=364.09 Aligned_cols=433 Identities=20% Similarity=0.208 Sum_probs=356.8
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
..+++.|+++++. +.+..|..|..+++|++|++++ +.+++..|..|+++++|++|++++|.++ .+|.. .+
T Consensus 20 ~~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 89 (520)
T 2z7x_B 20 SQKTTILNISQNY------ISELWTSDILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PT 89 (520)
T ss_dssp CTTCSEEECCSSC------CCCCCHHHHTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CC
T ss_pred cccccEEECCCCc------ccccChhhccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCcee-ecCcc--cc
Confidence 3689999999988 6666678899999999999999 7788777899999999999999999999 67766 89
Q ss_pred CCCCEEEccCCcCCC-CCCccCCCCCCCcEEEccCCcccccCcccccCCCCC--CEEEcccCCC--cccCCccccCCC-C
Q 048827 162 SLLQTLSLGGNRLKG-PIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSL--QSLDFSFNLL--SGFIPDALVRSQ-N 235 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~ 235 (576)
++|++|++++|.+++ .+|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+. .
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccc
Confidence 999999999999986 478899999999999999999876 457777888 9999999999 778888777665 3
Q ss_pred CCEEEccCCcccccCch-hhcCCCCCCeEEeeccc-------CcCCChhhhcCCCCCcEEEccCCcCccccCcccc--CC
Q 048827 236 LTYIDLSNNQFSGKFPI-SICGLANLQDLSLSHNQ-------LTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILG--RG 305 (576)
Q Consensus 236 L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~~~-------~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~--~~ 305 (576)
...+++++|.+.+.++. .+..+++|+.|++++|. +.+.++ .++.+++|+.|+++++.+.+....... ..
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence 44567888887765554 56788999999999987 555555 688899999999998876653222111 12
Q ss_pred CCCCCEEECcCCCCCCCCCCCcC-----C-CCCccEEEccCCcCccCCCC--CCC---CCCccEEEccCCcCCCccchhh
Q 048827 306 IPSLLSIDLSYNNLSLGTVPNWI-----K-DRPLSNVNLAGCKLRGALPK--FTR---PDSLSSIDLSNNLLTDGISSFF 374 (576)
Q Consensus 306 ~~~L~~L~l~~~~l~~~~~~~~~-----~-~~~L~~L~l~~~~~~~~~~~--~~~---~~~L~~L~Ls~n~l~~~~~~~~ 374 (576)
.++|++|++++|.++ +.+|..+ . ..+|+.+++++|.+ .+|. +.. .++|++|++++|.+.+... +
T Consensus 246 ~~~L~~L~l~~n~l~-~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~ 320 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQ-GQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--P 320 (520)
T ss_dssp TSSCSEEEEEEEEEE-SCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--C
T ss_pred hCcccEEEeeccccc-CccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--h
Confidence 468999999999887 6677665 3 34899999999987 3331 111 1579999999999876331 2
Q ss_pred hCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCcc--ccchhhhhhccCCcCEEEccCCcCcccCCC--CCCC
Q 048827 375 TNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITG--SLSSIINNRTSSFLEALDVSGNHFSGEIPE--FTEG 449 (576)
Q Consensus 375 ~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~ 449 (576)
..+++|++|++++|.+.+..+. +..+++|++|++++|++.+ .+|..+...+. |++|++++|.+.+.+|. +..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~--L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS--LQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT--CCEEECCSSCCBCCGGGCSCCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC--CCEEECCCCcCCcccccchhccC
Confidence 6789999999999999875554 8899999999999999987 45555665554 99999999999985664 7888
Q ss_pred CCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCccccccc-ccCCCCCCEEE
Q 048827 450 LSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTS-LLGIRGLRHAN 528 (576)
Q Consensus 450 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 528 (576)
++|++|++++|++++..|..+. ++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|.. +..+++|++|+
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE
Confidence 9999999999999988777654 79999999999999 89988889999999999999999 57765 89999999999
Q ss_pred ccCCcceecCC
Q 048827 529 FRANRLCGEIP 539 (576)
Q Consensus 529 l~~n~l~g~iP 539 (576)
+++|++.+..+
T Consensus 475 l~~N~~~c~c~ 485 (520)
T 2z7x_B 475 LHTNPWDCSCP 485 (520)
T ss_dssp CCSSCBCCCHH
T ss_pred CcCCCCcccCC
Confidence 99999987655
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.5e-40 Score=352.64 Aligned_cols=447 Identities=18% Similarity=0.185 Sum_probs=311.5
Q ss_pred EEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCC
Q 048827 86 TGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQ 165 (576)
Q Consensus 86 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 165 (576)
+.++++++. +. .+|..+. ++|++|++++ +.+++..+..|.++++|++|++++|.+++..|..|+++++|+
T Consensus 34 ~~l~ls~~~------L~-~ip~~~~--~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRN------LT-HVPKDLP--PRTKALSLSQ-NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp CEEECTTSC------CC-SCCTTSC--TTCCEEECCS-SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cEEEcCCCC------Cc-cCCCCCC--CCcCEEECCC-CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 788999887 33 4777664 8999999999 778877778999999999999999999988888999999999
Q ss_pred EEEccCCcCCCCCCccCCCCCCCcEEEccCCccccc-CcccccCCCCCCEEEcccCCCcccCCccccCCCCC--CEEEcc
Q 048827 166 TLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGP-IPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNL--TYIDLS 242 (576)
Q Consensus 166 ~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~ 242 (576)
+|++++|.++ .+|.. .+++|++|++++|.+++. .|..+.++++|++|++++|.+++. .+..+++| ++|+++
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 9999999998 67766 899999999999999863 468999999999999999998864 34445555 999999
Q ss_pred CCcc--cccCchhhcCCC-CCCeEEeecccCcCCCh-hhhcCCCCCcEEEccCCcC-----ccccCccccCCCCCCCEEE
Q 048827 243 NNQF--SGKFPISICGLA-NLQDLSLSHNQLTGTIP-EQIGGLRSLNSLKLSEMDS-----QIRLPIILGRGIPSLLSID 313 (576)
Q Consensus 243 ~n~~--~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~-----~~~~~~~~~~~~~~L~~L~ 313 (576)
+|.+ ++..|..+..+. ..-.+++++|.+.+.++ ..+..+++|+.+++++|.. .+..+ .+..+++|++++
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~ 255 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVT 255 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEE
Confidence 9998 777788777654 12255778888776554 3456788999999998742 11111 345667777777
Q ss_pred CcCCCCCCC---CCCCcCCCCCccEEEccCCcCccCCCCC------CCCCCccEEEccCCcCCCccc-hhhhC---CCCC
Q 048827 314 LSYNNLSLG---TVPNWIKDRPLSNVNLAGCKLRGALPKF------TRPDSLSSIDLSNNLLTDGIS-SFFTN---MSSL 380 (576)
Q Consensus 314 l~~~~l~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~~-~~~~~---l~~L 380 (576)
+.++.+... .++......+|++|++++|.+.+.+|.. ..++.|+.++++.+.+ .+| ..+.. ..+|
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCC
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcc
Confidence 776655411 1122233347888888888877666553 2234444455555544 122 22221 2467
Q ss_pred CeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccC--CC-CCCCCCCcEEEc
Q 048827 381 QNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEI--PE-FTEGLSLKVLNI 457 (576)
Q Consensus 381 ~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~-~~~~~~L~~L~L 457 (576)
++|++++|.+.... ....+++|++|++++|.+.+.+|..+...+. |++|++++|.+.+.. |. +..+++|++|++
T Consensus 334 ~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 334 KMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR--LQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp SEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS--CCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred eEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCC--CCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 77777777664211 1255667777777777777666655554444 777777777776522 22 566677777777
Q ss_pred cCCcCCccChh-hhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCccee
Q 048827 458 GSNKITGHIPS-SISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCG 536 (576)
Q Consensus 458 ~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g 536 (576)
++|++++.+|. .+..+++|++|++++|.+++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++.
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~- 486 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK- 486 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-
Confidence 77777764443 466677777777777777666665443 57777777777776 56666667777777777777777
Q ss_pred cCCCC--CCCCCCCcccccCCCCCC
Q 048827 537 EIPQG--RPYSIFPGSAYAHNLCLC 559 (576)
Q Consensus 537 ~iP~~--~~~~~l~~~~~~~n~~l~ 559 (576)
.+|.. ..++.++.+++++||.-|
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 56653 556667777777777665
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.5e-39 Score=349.96 Aligned_cols=436 Identities=22% Similarity=0.251 Sum_probs=347.1
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
..+++.|+|+++. +.+..+..|.++++|++|+|++ +.+++..+..|+++++|++|++++|.+++..+..|+++
T Consensus 75 l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 75 FPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp CTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred CCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 4578999999987 6666677899999999999999 67876666789999999999999999997666679999
Q ss_pred CCCCEEEccCCcCCC-CCCccCCCCCCCcEEEccCCcccccCcccccCCCC----CCEEEcccCCCcccCCccccCCCCC
Q 048827 162 SLLQTLSLGGNRLKG-PIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLS----LQSLDFSFNLLSGFIPDALVRSQNL 236 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~----L~~L~l~~n~l~~~~~~~l~~l~~L 236 (576)
++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.+ ...++++.|.++...+..+ ....+
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~ 226 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRL 226 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEE
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhh
Confidence 999999999999975 46788899999999999999999888887766554 4478899998885554444 44456
Q ss_pred CEEEccCCccccc-Cchh---------------------------------------------------------hcCCC
Q 048827 237 TYIDLSNNQFSGK-FPIS---------------------------------------------------------ICGLA 258 (576)
Q Consensus 237 ~~L~l~~n~~~~~-~~~~---------------------------------------------------------l~~l~ 258 (576)
+.+++.+|..... .+.. +..+.
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 6777766532211 0111 12223
Q ss_pred CCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEc
Q 048827 259 NLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNL 338 (576)
Q Consensus 259 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 338 (576)
+++.+.+.++.+... ..+.....++.|++.++.+..... ..++.|+.+++..+... ..+.....++|+.+++
T Consensus 307 ~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~--~~~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 307 NVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDL 378 (635)
T ss_dssp TCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC----CBCTTCCEEEEESCCSC--CBCCCCBCTTCCEEEC
T ss_pred ccccccccccccccc--cccccchhhhhhhcccccccCcCc----ccchhhhhcccccccCC--CCcccccccccccchh
Confidence 444455544444322 235566789999999987655432 35788999999998775 3444556679999999
Q ss_pred cCCcCccCC--C-CCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCC--CCCCCCCCEEEccCCcC
Q 048827 339 AGCKLRGAL--P-KFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE--IRFPDGLASIDLHSNQI 413 (576)
Q Consensus 339 ~~~~~~~~~--~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~~L~~L~ls~n~~ 413 (576)
++|.+.... + ......+|+++++..+.+.. .+..+..+++|+.+++..+......+. +..+++++.++++.|.+
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred hccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 999875432 2 13345889999999998766 455678899999999999987655443 77889999999999999
Q ss_pred ccccchhhhhhccCCcCEEEccCCcCccc-CCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCc
Q 048827 414 TGSLSSIINNRTSSFLEALDVSGNHFSGE-IPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIP 491 (576)
Q Consensus 414 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p 491 (576)
.+..+..+..... ++.|++++|.+.+. .|. +..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|
T Consensus 458 ~~~~~~~~~~~~~--L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~ 535 (635)
T 4g8a_A 458 RVAFNGIFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 535 (635)
T ss_dssp EECCTTTTTTCTT--CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred ccccccccccchh--hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence 9888877776655 99999999986543 455 8889999999999999999999999999999999999999998888
Q ss_pred ccccCCCCCCEEeCCCCcCcccccccccCC-CCCCEEEccCCccee
Q 048827 492 TSLGLLSKLQWLDVSVNSLTGKIPTSLLGI-RGLRHANFRANRLCG 536 (576)
Q Consensus 492 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~g 536 (576)
..+..+++|++|+|++|++++..|+.+..+ ++|++|++++|++..
T Consensus 536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 899999999999999999999999999988 689999999999974
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6e-39 Score=335.87 Aligned_cols=362 Identities=20% Similarity=0.212 Sum_probs=260.3
Q ss_pred CCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCC-CccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEE
Q 048827 138 TRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPI-PPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLD 216 (576)
Q Consensus 138 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 216 (576)
++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67778888877777666777777777888888777775443 45677777777777777777766677777777777777
Q ss_pred cccCCCcccCCcc--ccCCCCCCEEEccCCcccccCchh-hcCCCCCCeEEeecccCcCCChhhhcCC--CCCcEEEccC
Q 048827 217 FSFNLLSGFIPDA--LVRSQNLTYIDLSNNQFSGKFPIS-ICGLANLQDLSLSHNQLTGTIPEQIGGL--RSLNSLKLSE 291 (576)
Q Consensus 217 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l--~~L~~L~L~~ 291 (576)
+++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777777644443 667777777777777777665554 6677777777777777766555555443 3444444444
Q ss_pred CcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccc
Q 048827 292 MDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGIS 371 (576)
Q Consensus 292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 371 (576)
|.+....+. +... ...+.+...++|++|++++|.+++..+
T Consensus 190 n~l~~~~~~--------------------------~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 190 ITLQDMNEY--------------------------WLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp CBCTTCSTT--------------------------CTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred Ccccccchh--------------------------hccc--------------cccccccccceeeeEecCCCcccccch
Confidence 433221110 0000 000112233566666666666666555
Q ss_pred hhhhCC---CCCCeEEccCCcceeeCCC-----------CC--CCCCCCEEEccCCcCccccchhhhhhccCCcCEEEcc
Q 048827 372 SFFTNM---SSLQNIKLSNNQLKFDVSE-----------IR--FPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVS 435 (576)
Q Consensus 372 ~~~~~l---~~L~~L~L~~n~~~~~~~~-----------~~--~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~ 435 (576)
..+... ++|+.|++++|...+.... +. ..++|++|++++|.+.+..+..+...+. |++|+++
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~Ls 307 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD--LEQLTLA 307 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT--CCEEECT
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCC--CCEEECC
Confidence 555433 5666666666644322111 11 2368999999999999888887776655 9999999
Q ss_pred CCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccc
Q 048827 436 GNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKI 514 (576)
Q Consensus 436 ~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 514 (576)
+|.+.+..+. +..+++|++|++++|.+++..+..+..+++|++|+|++|.+.+..|..+..+++|++|++++|++++..
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 9999988776 888999999999999999888999999999999999999999888999999999999999999999766
Q ss_pred cccccCCCCCCEEEccCCcceecCCCC
Q 048827 515 PTSLLGIRGLRHANFRANRLCGEIPQG 541 (576)
Q Consensus 515 p~~l~~l~~L~~L~l~~n~l~g~iP~~ 541 (576)
+..+..+++|++|++++|++.+.+|..
T Consensus 388 ~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 388 DGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HhHhccCCcccEEEccCCCcccCCCcc
Confidence 667889999999999999999999853
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.1e-39 Score=348.15 Aligned_cols=434 Identities=18% Similarity=0.188 Sum_probs=338.9
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHL 161 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l 161 (576)
..+++.|+++++. +.+..+..|..+++|++|++++ +.+++..|..|+.+++|++|++++|.++ .+|.. .+
T Consensus 51 ~~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 51 PPRTKALSLSQNS------ISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp CTTCCEEECCSSC------CCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCCcCEEECCCCC------ccccChhhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 4689999999988 6666678999999999999999 7788888899999999999999999999 67776 89
Q ss_pred CCCCEEEccCCcCCC-CCCccCCCCCCCcEEEccCCcccccCcccccCCCCC--CEEEcccCCC--cccCCccccCCC--
Q 048827 162 SLLQTLSLGGNRLKG-PIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSL--QSLDFSFNLL--SGFIPDALVRSQ-- 234 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-- 234 (576)
++|++|++++|.+++ ..|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 999999999999986 3468999999999999999998864 44555555 9999999999 888888887765
Q ss_pred CCCEEEccCCcccccCch-hhcCCCCCCeEEeecccCc----CCChhhhcCCCCCcEEEccCCcCccccCcc--ccCCCC
Q 048827 235 NLTYIDLSNNQFSGKFPI-SICGLANLQDLSLSHNQLT----GTIPEQIGGLRSLNSLKLSEMDSQIRLPII--LGRGIP 307 (576)
Q Consensus 235 ~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~~~~~----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~ 307 (576)
.+ .+++++|.+.+.++. .+..+++|+.+++++|... ......+..+++|+.+++..+.+....... .....+
T Consensus 198 ~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 198 VL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred eE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence 33 557788887765554 4567889999999988521 122345678888898888877654321110 112335
Q ss_pred CCCEEECcCCCCCCCCCCCcC-----C-CCCccEEEccCCcCccCCCC-----CCCCCCccEEEccCCcCCCccchhhhC
Q 048827 308 SLLSIDLSYNNLSLGTVPNWI-----K-DRPLSNVNLAGCKLRGALPK-----FTRPDSLSSIDLSNNLLTDGISSFFTN 376 (576)
Q Consensus 308 ~L~~L~l~~~~l~~~~~~~~~-----~-~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 376 (576)
+|++|++++|.++ +.+|... . ...|+.+++..+.+ .+|. .....+|++|++++|.+..... ...
T Consensus 277 ~L~~L~l~~n~l~-~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~ 351 (562)
T 3a79_B 277 PVEYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPS 351 (562)
T ss_dssp SEEEEEEEEEEEC-SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSS
T ss_pred cccEEEEeccEee-ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccC
Confidence 8999999999887 5666654 1 12444445555544 2221 0012569999999998865321 267
Q ss_pred CCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccc--cchhhhhhccCCcCEEEccCCcCcccCCC--CCCCCC
Q 048827 377 MSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGS--LSSIINNRTSSFLEALDVSGNHFSGEIPE--FTEGLS 451 (576)
Q Consensus 377 l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~ 451 (576)
+++|++|++++|.+.+..+. +..+++|++|++++|++.+. +|..+..... |++|++++|.+.+.+|. +..+++
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS--LETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT--CCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC--CCEEECCCCcCCCccChhhhcCccc
Confidence 88999999999999875554 88899999999999999863 3344554444 99999999999986665 788899
Q ss_pred CcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCccccccc-ccCCCCCCEEEcc
Q 048827 452 LKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTS-LLGIRGLRHANFR 530 (576)
Q Consensus 452 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~ 530 (576)
|++|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 99999999999877766554 78999999999998 78888889999999999999999 67765 8999999999999
Q ss_pred CCcceecCCC
Q 048827 531 ANRLCGEIPQ 540 (576)
Q Consensus 531 ~n~l~g~iP~ 540 (576)
+|++.+..|.
T Consensus 506 ~N~~~c~c~~ 515 (562)
T 3a79_B 506 DNPWDCTCPG 515 (562)
T ss_dssp SCCBCCCHHH
T ss_pred CCCcCCCcch
Confidence 9999876664
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-38 Score=331.15 Aligned_cols=391 Identities=25% Similarity=0.325 Sum_probs=145.0
Q ss_pred CCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCC-------------CEEEccCCcCCCCCC
Q 048827 113 HFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLL-------------QTLSLGGNRLKGPIP 179 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-------------~~L~L~~~~~~~~~p 179 (576)
++|++|++++ +.+ +.+|..++++++|++|++++|.+.+.+|.+++++++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~-n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHS-SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhccc-Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 3444444444 233 3444444444444444444444444444444444332 444444444442 22
Q ss_pred ccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCC
Q 048827 180 PSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLAN 259 (576)
Q Consensus 180 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 259 (576)
.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++++++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 21 2344444444444443 2321 2344444444444442 1110 1344444444444442 33 2444444
Q ss_pred CCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEcc
Q 048827 260 LQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLA 339 (576)
Q Consensus 260 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 339 (576)
|++|++++|.+++ +|.. .++|++|++++|.+.+ ++ .+..+++|++|++++|.++ .+|... .+|++|+++
T Consensus 155 L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~--~l~~~~--~~L~~L~l~ 223 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLK--KLPDLP--LSLESIVAG 223 (454)
T ss_dssp CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCS--SCCCCC--TTCCEEECC
T ss_pred CCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCC--cCCCCc--CcccEEECc
Confidence 4444444444442 2221 1244444444444433 22 2344444555555554443 122221 245555555
Q ss_pred CCcCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccch
Q 048827 340 GCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSS 419 (576)
Q Consensus 340 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~ 419 (576)
+|.+. .+|.+..+++|++|++++|.+++ +|. ..++|+.|++++|.+.+. +. .+++|++|++++|++.+...
T Consensus 224 ~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~--~~~~L~~L~ls~N~l~~l~~- 294 (454)
T 1jl5_A 224 NNILE-ELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE--LPQSLTFLDVSENIFSGLSE- 294 (454)
T ss_dssp SSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSEESC-
T ss_pred CCcCC-cccccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Cc--ccCcCCEEECcCCccCcccC-
Confidence 55444 33334444555555555555544 221 124455555555554431 11 12445555555555544110
Q ss_pred hhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCC
Q 048827 420 IINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSK 499 (576)
Q Consensus 420 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~ 499 (576)
.. +.|++|++++|.+.+. +.+ .++|+.|++++|++++ +|.. +++|++|++++|.+. .+|. .+++
T Consensus 295 ~~-----~~L~~L~l~~N~l~~i-~~~--~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~ 358 (454)
T 1jl5_A 295 LP-----PNLYYLNASSNEIRSL-CDL--PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQN 358 (454)
T ss_dssp CC-----TTCCEEECCSSCCSEE-CCC--CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred cC-----CcCCEEECcCCcCCcc-cCC--cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhh
Confidence 00 1255555555555431 111 1255555555555553 3322 345555555555555 3443 2455
Q ss_pred CCEEeCCCCcCcc--cccccccCC-------------CCCCEEEccCCccee--cCCCCCCCCCCCcccccCCCCCCC
Q 048827 500 LQWLDVSVNSLTG--KIPTSLLGI-------------RGLRHANFRANRLCG--EIPQGRPYSIFPGSAYAHNLCLCG 560 (576)
Q Consensus 500 L~~L~L~~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~l~g--~iP~~~~~~~l~~~~~~~n~~l~~ 560 (576)
|++|++++|++++ .+|.++..+ ++|++|++++|++.| .+|. ++..+.+.+|..-|.
T Consensus 359 L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVDP 431 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------------------------
T ss_pred ccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhheeCcCcccCCc
Confidence 5555555555555 455554444 789999999999987 6764 466677777754443
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-39 Score=320.64 Aligned_cols=295 Identities=32% Similarity=0.544 Sum_probs=243.9
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCCCcCcEEcCCCC--CCEEEEEcCCCCcCCCCceee--ecCcccc
Q 048827 36 ICFEADRLVLQEFKAKILKDTTEILASWM-GKDCCGGDWEGVVCNPAT--GRVTGLALQRPDRELGMYMIG--TLPAALG 110 (576)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~c~~~w~~v~c~~~~--~~v~~l~l~~~~~~~~~~~~~--~~~~~l~ 110 (576)
.|.++|+.+|.+||+++. ++. .+.+|. +.+||.+.|.||.|+... ++|+.++++++. +.+ .+|+.+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~------l~~~~~~~~~l~ 73 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN------LPKPYPIPSSLA 73 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCC------CSSCEECCGGGG
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCC------ccCCcccChhHh
Confidence 589999999999999996 554 788997 678993349999998654 899999999988 677 8899999
Q ss_pred CCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcE
Q 048827 111 NLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLV 190 (576)
Q Consensus 111 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 190 (576)
++++|++|++++++.+.+.+|..|+++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+.++++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 99999999999547788888999999999999999999998889999999999999999999998888989999999999
Q ss_pred EEccCCcccccCcccccCCC-CCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeeccc
Q 048827 191 INLGKNSVSGPIPPTFISFL-SLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQ 269 (576)
Q Consensus 191 L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~ 269 (576)
|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 99999999888898898888 899999999999888888888887 9999999999988888888889999999999998
Q ss_pred CcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCc
Q 048827 270 LTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCK 342 (576)
Q Consensus 270 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 342 (576)
+++..+. +..+++|++|++++|.+.+.+|. .+..+++|++|++++|.++ +.+|......+|+.+++.+|.
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLC-GEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEE-EECCCSTTGGGSCGGGTCSSS
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCccc-ccCCCCccccccChHHhcCCC
Confidence 8866554 67778888888888887766665 5566667777777666665 445544333344444444443
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-38 Score=329.80 Aligned_cols=362 Identities=19% Similarity=0.171 Sum_probs=265.9
Q ss_pred CCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCC-CccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEE
Q 048827 113 HFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSI-PPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVI 191 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 191 (576)
++|++|++++ +.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 30 ~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCS-SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecC-CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 7899999998 6777777888999999999999999887544 5678999999999999999987778889999999999
Q ss_pred EccCCcccccCccc--ccCCCCCCEEEcccCCCcccCCcc-ccCCCCCCEEEccCCcccccCchhhcCC--CCCCeEEee
Q 048827 192 NLGKNSVSGPIPPT--FISFLSLQSLDFSFNLLSGFIPDA-LVRSQNLTYIDLSNNQFSGKFPISICGL--ANLQDLSLS 266 (576)
Q Consensus 192 ~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~L~ 266 (576)
++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+ .+|+.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999988755554 888999999999999998877766 7899999999999999998888887766 688999999
Q ss_pred cccCcCCChhh--------hcCCCCCcEEEccCCcCccccCcccc--CCCCCCCEEECcCCCCCCCCCCCcCCCCCccEE
Q 048827 267 HNQLTGTIPEQ--------IGGLRSLNSLKLSEMDSQIRLPIILG--RGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNV 336 (576)
Q Consensus 267 ~~~~~~~~~~~--------l~~l~~L~~L~L~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 336 (576)
+|.+.+..+.. +..+++|++|++++|.+.+..+.... ...++|+.|++++|......+.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------- 257 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------- 257 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----------
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----------
Confidence 99887544432 23557788888888887765554222 1236777777777755411110
Q ss_pred EccCCcCccCCC-CCC--CCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCc
Q 048827 337 NLAGCKLRGALP-KFT--RPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQ 412 (576)
Q Consensus 337 ~l~~~~~~~~~~-~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~ 412 (576)
.+.+....+ .+. ..++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|
T Consensus 258 ---~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 333 (455)
T 3v47_A 258 ---HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN- 333 (455)
T ss_dssp ---CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred ---hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-
Confidence 001100000 011 125667777777777666666666666666666666666655443 555555555555555
Q ss_pred CccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCc
Q 048827 413 ITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIP 491 (576)
Q Consensus 413 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p 491 (576)
.+.+..+. +..+++|++|++++|++++..|..+..+++|++|++++|++++..+
T Consensus 334 -------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 334 -------------------------FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp -------------------------CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------------------------ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 44444343 5667788888888888887778888888889999999888886666
Q ss_pred ccccCCCCCCEEeCCCCcCccccc
Q 048827 492 TSLGLLSKLQWLDVSVNSLTGKIP 515 (576)
Q Consensus 492 ~~l~~l~~L~~L~L~~n~l~~~~p 515 (576)
..+..+++|++|++++|++++..|
T Consensus 389 ~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hHhccCCcccEEEccCCCcccCCC
Confidence 677888899999999998887665
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-37 Score=323.04 Aligned_cols=396 Identities=23% Similarity=0.278 Sum_probs=275.9
Q ss_pred CCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCC-------------CEEEccCC
Q 048827 82 TGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRL-------------TQLILEDN 148 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~ 148 (576)
..+++.++++++. + |.+|+.++++++|++|++++ +.+.+.+|..++.+++| ++|++++|
T Consensus 10 ~~~L~~L~l~~n~------l-~~iP~~i~~L~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 10 NTFLQEPLRHSSN------L-TEMPVEAENVKSKTEYYNAW-SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp -------------------------------CCHHHHHHHH-HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccchhhhcccCc------h-hhCChhHhcccchhhhhccC-CcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 3577888888877 5 89999999999999999998 67888999999988865 99999999
Q ss_pred CCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCc
Q 048827 149 SLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPD 228 (576)
Q Consensus 149 ~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 228 (576)
.++ .+|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|.+++ +|
T Consensus 82 ~l~-~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp- 147 (454)
T 1jl5_A 82 GLS-SLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP- 147 (454)
T ss_dssp CCS-CCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-
T ss_pred ccc-cCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-
Confidence 998 45652 4799999999999995 6754 4899999999999885 3321 2689999999999996 66
Q ss_pred cccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCC
Q 048827 229 ALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPS 308 (576)
Q Consensus 229 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 308 (576)
.+..+++|++|++++|.+++ +|..+ ++|++|++++|.+.+ +| .++.+++|++|++++|.+.+ ++. ..++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~ 216 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLS 216 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTT
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCc
Confidence 59999999999999999985 56543 599999999999986 56 58999999999999998875 332 2369
Q ss_pred CCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCC
Q 048827 309 LLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNN 388 (576)
Q Consensus 309 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 388 (576)
|++|++++|.++ .+|.+....+|++|++++|.+.+. |. ..++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 217 L~~L~l~~n~l~--~lp~~~~l~~L~~L~l~~N~l~~l-~~--~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 217 LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTL-PD--LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp CCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC-CS--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred ccEEECcCCcCC--cccccCCCCCCCEEECCCCcCCcc-cc--cccccCEEECCCCcccc-cCcc---cCcCCEEECcCC
Confidence 999999999987 677776777999999999999863 33 24899999999999987 4432 479999999999
Q ss_pred cceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChh
Q 048827 389 QLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPS 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 468 (576)
.+.+... .+++|+.|++++|++.+.. ... +.|++|++++|.+.+ +|.. +++|++|++++|+++ .+|.
T Consensus 288 ~l~~l~~---~~~~L~~L~l~~N~l~~i~-~~~-----~~L~~L~Ls~N~l~~-lp~~--~~~L~~L~L~~N~l~-~lp~ 354 (454)
T 1jl5_A 288 IFSGLSE---LPPNLYYLNASSNEIRSLC-DLP-----PSLEELNVSNNKLIE-LPAL--PPRLERLIASFNHLA-EVPE 354 (454)
T ss_dssp CCSEESC---CCTTCCEEECCSSCCSEEC-CCC-----TTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS-CCCC
T ss_pred ccCcccC---cCCcCCEEECcCCcCCccc-CCc-----CcCCEEECCCCcccc-cccc--CCcCCEEECCCCccc-cccc
Confidence 9987432 2378999999999998632 111 249999999999986 5543 579999999999999 4665
Q ss_pred hhhcCccCCeeeCccCcCCc--cCcccccCC-------------CCCCEEeCCCCcCcc--cccccccCCCCCCEEEccC
Q 048827 469 SISNLIELEMLDIQRNQIAG--TIPTSLGLL-------------SKLQWLDVSVNSLTG--KIPTSLLGIRGLRHANFRA 531 (576)
Q Consensus 469 ~l~~l~~L~~L~Ls~n~~~~--~~p~~l~~l-------------~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~ 531 (576)
.+++|++|++++|++.+ .+|.++..+ ++|++|++++|++++ .+|. +++.|.+.+
T Consensus 355 ---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~ 425 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNS 425 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------------------
T ss_pred ---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcC
Confidence 57899999999999998 788888877 899999999999997 6664 567788999
Q ss_pred CcceecCCCC
Q 048827 532 NRLCGEIPQG 541 (576)
Q Consensus 532 n~l~g~iP~~ 541 (576)
|.+.+.+|.+
T Consensus 426 ~~~~~~~~~~ 435 (454)
T 1jl5_A 426 ERVVDPYEFA 435 (454)
T ss_dssp ----------
T ss_pred cccCCccccC
Confidence 9999988876
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-35 Score=308.18 Aligned_cols=346 Identities=24% Similarity=0.352 Sum_probs=235.8
Q ss_pred CCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEE
Q 048827 136 NLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSL 215 (576)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 215 (576)
.+++++.|++.++.+. .+| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 4678999999999988 566 488899999999999999854 44 8899999999999999886544 8899999999
Q ss_pred EcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCc
Q 048827 216 DFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQ 295 (576)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 295 (576)
++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++. +.+.+. + .+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCC
Confidence 999998886533 8889999999999998874 44 48888999999986 444433 2 3778888888888888765
Q ss_pred cccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhh
Q 048827 296 IRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFT 375 (576)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 375 (576)
... .+..+++|++|++++|.+. ..+..... ++|++|++++|.+++. ..+.
T Consensus 191 ~~~---~l~~l~~L~~L~l~~n~l~--~~~~~~~l-----------------------~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 191 DIS---VLAKLTNLESLIATNNQIS--DITPLGIL-----------------------TNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp CCG---GGGGCTTCSEEECCSSCCC--CCGGGGGC-----------------------TTCCEEECCSSCCCCC--GGGG
T ss_pred CCh---hhccCCCCCEEEecCCccc--cccccccc-----------------------CCCCEEECCCCCcccc--hhhh
Confidence 431 3556777777777777665 22222223 4445555555544442 2344
Q ss_pred CCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEE
Q 048827 376 NMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVL 455 (576)
Q Consensus 376 ~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 455 (576)
.+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.... .|+.|++++|.+.+. +.+..+++|+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~--~L~~L~L~~n~l~~~-~~~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLT--ALTNLELNENQLEDI-SPISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCT--TCSEEECCSSCCSCC-GGGGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCC--ccCeEEcCCCcccCc-hhhcCCCCCCEE
Confidence 45555555555555543322 4455555555555555554433 22222 266666666666543 225566677777
Q ss_pred EccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcce
Q 048827 456 NIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 456 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
++++|++++..| +..+++|++|++++|++.+. ..+..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 777777775544 56777777777777777643 356777777777777777776655 677777777777777777
Q ss_pred e
Q 048827 536 G 536 (576)
Q Consensus 536 g 536 (576)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 5
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.2e-36 Score=311.11 Aligned_cols=361 Identities=19% Similarity=0.160 Sum_probs=258.2
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCC
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG 183 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 183 (576)
..+..++++++|++|++++ +.+++ +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + ++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~-n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHN-SSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TSEEEHHHHTTCCEEECCS-SCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred ccccChhHcCCCCEEEccC-CCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cC
Confidence 3344667788888888887 55664 34 57788888888888888874 44 77888888888888888753 3 77
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeE
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDL 263 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 263 (576)
++++|++|++++|.+++. + +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 888888888888888753 3 77888888888888888763 2677888888888888555454 46677888888
Q ss_pred EeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcC
Q 048827 264 SLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKL 343 (576)
Q Consensus 264 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 343 (576)
++++|.+++ +| ++.+++|+.|++++|.+.+. .+..+++|++|++++|.++. +| +....+|+.|++++|.+
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~--ip-~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE--ID-VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC--CC-CTTCTTCSEEECCSSCC
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc--cC-ccccCCCCEEEeeCCcC
Confidence 888888775 33 66777888888888776654 35667777777777777762 44 44445777777777776
Q ss_pred ccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhh
Q 048827 344 RGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINN 423 (576)
Q Consensus 344 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 423 (576)
.+.. ...+++|+.|+++++ +|+.|++++|.+.+..+ ...+++|+.|++++|...+.+|...
T Consensus 246 ~~~~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~-- 306 (457)
T 3bz5_A 246 TELD--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA-- 306 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--
T ss_pred CCcC--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC--
Confidence 6543 234466666666554 35566677776655544 4566778888888887766666421
Q ss_pred hccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEE
Q 048827 424 RTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWL 503 (576)
Q Consensus 424 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 503 (576)
..|+.|++++ +++|++|++++|++++. + +..+++|+.|++++|++.+ ++.|+.|
T Consensus 307 ---~~L~~L~l~~------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L 360 (457)
T 3bz5_A 307 ---AGITELDLSQ------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKI 360 (457)
T ss_dssp ---CCCSCCCCTT------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGS
T ss_pred ---CcceEechhh------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccc
Confidence 1255554444 36888999999998874 3 7888899999999998875 2466777
Q ss_pred eCCCCcCcccccccccCCCCCCEEEccCCcceecCCCC
Q 048827 504 DVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQG 541 (576)
Q Consensus 504 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~ 541 (576)
++++|.+.|. ..+..|+.+++++|+++|.||..
T Consensus 361 ~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 361 PALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp SGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 8888888865 24556788899999999999975
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.7e-35 Score=306.80 Aligned_cols=347 Identities=24% Similarity=0.326 Sum_probs=243.2
Q ss_pred cCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCc
Q 048827 110 GNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLL 189 (576)
Q Consensus 110 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 189 (576)
..++++++|++.+ +.+. .+| .+..+++|++|++++|.+.+ ++. ++++++|++|++++|.+.+..+ +.++++|+
T Consensus 43 ~~l~~l~~L~l~~-~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADR-LGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCS-SCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCC-CCCc-cCc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 3578999999998 5554 355 47889999999999999984 454 9999999999999999985444 99999999
Q ss_pred EEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeeccc
Q 048827 190 VINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQ 269 (576)
Q Consensus 190 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~ 269 (576)
+|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|+++ +.+.+. + .+..+++|++|++++|.
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCc
Confidence 99999999986533 89999999999999998853 358899999999997 455433 2 38899999999999999
Q ss_pred CcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCC
Q 048827 270 LTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPK 349 (576)
Q Consensus 270 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 349 (576)
+.+. ..+..+++|++|++++|.+....+ +..+++|++|++++|.++ .++.+....+|+.|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLK--DIGTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcc--cchhhhcCCCCCEEECCCCccccchh-
Confidence 8753 348899999999999999877654 567899999999999887 34444444566666666666654433
Q ss_pred CCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCc
Q 048827 350 FTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFL 429 (576)
Q Consensus 350 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L 429 (576)
+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+..+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~----------- 326 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP----------- 326 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-----------
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-----------
Confidence 4455666666666666655333 5555566666666655543222 4444555555555555444333
Q ss_pred CEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCc
Q 048827 430 EALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNS 509 (576)
Q Consensus 430 ~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~ 509 (576)
+..+++|+.|++++|++++. ..+..+++|+.|++++|++.+..| +..+++|++|++++|+
T Consensus 327 ----------------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 327 ----------------VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp ----------------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred ----------------hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 34445555555555555532 245555555555555555554444 4555555555555555
Q ss_pred Ccc
Q 048827 510 LTG 512 (576)
Q Consensus 510 l~~ 512 (576)
+++
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 553
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=308.17 Aligned_cols=318 Identities=20% Similarity=0.223 Sum_probs=163.8
Q ss_pred CEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccC
Q 048827 141 TQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFN 220 (576)
Q Consensus 141 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 220 (576)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34555555555 4554442 45666666666665544555666666666666666665555555666666666666666
Q ss_pred CCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCc
Q 048827 221 LLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPI 300 (576)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 300 (576)
.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 55544444455556666666666655555555555555555555555555443333333333333333333322111000
Q ss_pred cccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCC
Q 048827 301 ILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSL 380 (576)
Q Consensus 301 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 380 (576)
. +..+++|+.|++++|.+.+..+..|..+++|
T Consensus 171 -~-----------------------------------------------l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 171 -A-----------------------------------------------LSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp -H-----------------------------------------------HTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred -H-----------------------------------------------hcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 0 1122455555555555555555566667777
Q ss_pred CeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEcc
Q 048827 381 QNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIG 458 (576)
Q Consensus 381 ~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~ 458 (576)
+.|++++|...+..+. .....+|++|++++|.++...+..+..... |++|++++|.+.+..+. +..+++|+.|+++
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY--LRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT--CCEEECCSSCCCEECTTSCTTCTTCCEEECC
T ss_pred ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc--cCeeECCCCcCCccChhhccccccCCEEECC
Confidence 7777777655433333 333345666666666555433333333322 55555555555444333 4445555555555
Q ss_pred CCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCc
Q 048827 459 SNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLT 511 (576)
Q Consensus 459 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~ 511 (576)
+|++++..|..|..+++|+.|+|++|.+++..+..+..+++|++|++++|++.
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 55555444555555555555555555555433344444555555555555544
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-34 Score=299.21 Aligned_cols=363 Identities=18% Similarity=0.184 Sum_probs=276.1
Q ss_pred ccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccc
Q 048827 127 TGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTF 206 (576)
Q Consensus 127 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l 206 (576)
.+..+..++++++|++|++++|.+++ +| .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--c
Confidence 34456678889999999999999985 56 68999999999999999985 44 88999999999999999864 3 8
Q ss_pred cCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcE
Q 048827 207 ISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNS 286 (576)
Q Consensus 207 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 286 (576)
+++++|++|++++|.+++. + +..+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 8999999999999999864 3 88899999999999999863 3788899999999999665555 4778889999
Q ss_pred EEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcC
Q 048827 287 LKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLL 366 (576)
Q Consensus 287 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 366 (576)
|++++|.+.+. + +..+++|++|++++|.++.. .+....+|+.|++++|.+.+ +| +..+++|++|++++|.+
T Consensus 175 L~ls~n~l~~l-~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 175 LDCSFNKITEL-D---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EECCSSCCCCC-C---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCC
T ss_pred EECCCCcccee-c---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcC
Confidence 99998887763 2 56788888888888888732 24444577777777777776 33 55567777777777777
Q ss_pred CCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCC
Q 048827 367 TDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEF 446 (576)
Q Consensus 367 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 446 (576)
++.. +..+++|+.|+++++ +|+.|++++|.+.+.+|. ... ++|+.|++++|...+.+|.
T Consensus 246 ~~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~~--~~l--~~L~~L~Ls~n~~l~~l~~- 304 (457)
T 3bz5_A 246 TELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQA--EGC--RKIKELDVTHNTQLYLLDC- 304 (457)
T ss_dssp SCCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEEC--TTC--TTCCCCCCTTCTTCCEEEC-
T ss_pred CCcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCcccc--ccc--ccCCEEECCCCcccceecc-
Confidence 7643 345667777776654 456667777776666652 122 2377777777776665553
Q ss_pred CCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCE
Q 048827 447 TEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRH 526 (576)
Q Consensus 447 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 526 (576)
..++|+.|++++ +++|++|++++|++++ ++ +..+++|++|++++|++++ ++.|..
T Consensus 305 -~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~ 359 (457)
T 3bz5_A 305 -QAAGITELDLSQ-------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGK 359 (457)
T ss_dssp -TTCCCSCCCCTT-------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGG
T ss_pred -CCCcceEechhh-------------cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------cccccc
Confidence 334555555444 4689999999999997 33 8899999999999999985 356778
Q ss_pred EEccCCcceecCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 048827 527 ANFRANRLCGEIPQGRPYSIFPGSAYAHNLCLCGKPLPPC 566 (576)
Q Consensus 527 L~l~~n~l~g~iP~~~~~~~l~~~~~~~n~~l~~~~~~~~ 566 (576)
|++++|.+.|. ..+..++.+++++| .+. +++|..
T Consensus 360 L~l~~n~l~g~----~~~~~l~~l~l~~N-~l~-g~ip~~ 393 (457)
T 3bz5_A 360 IPALNNNFEAE----GQTITMPKETLTNN-SLT-IAVSPD 393 (457)
T ss_dssp SSGGGTSEEEE----EEEEECCCBCCBTT-BEE-EECCTT
T ss_pred ccccCCcEEec----ceeeecCccccccC-cEE-EEcChh
Confidence 88999999987 24667888899998 465 355554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=295.45 Aligned_cols=309 Identities=20% Similarity=0.168 Sum_probs=239.1
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCC
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG 183 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 183 (576)
.+|..+. +++++|++++ +.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.++...+..|.
T Consensus 25 ~ip~~~~--~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp SCCSCCC--TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred cCCCCCC--CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 4555443 5889999998 778777788899999999999999999977788899999999999999999865556688
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeE
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDL 263 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 263 (576)
++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 99999999999999998888889999999999999999988888889999999999999999987777778899999999
Q ss_pred EeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCC--CcCCCCCccEEEccCC
Q 048827 264 SLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVP--NWIKDRPLSNVNLAGC 341 (576)
Q Consensus 264 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~~~L~~L~l~~~ 341 (576)
++.+|.+.+..+..+..+++|++|++++|.....++.. .....+|++|++++|.++ .+| .+....+|+.|++++|
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLT--AVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCC--SCCHHHHTTCTTCCEEECCSS
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCccc--ccCHHHhcCccccCeeECCCC
Confidence 99999988777778888899999999988777766652 233447888888888776 333 2334446777777777
Q ss_pred cCccCCCC-CCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccc
Q 048827 342 KLRGALPK-FTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLS 418 (576)
Q Consensus 342 ~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~ 418 (576)
.+.+..+. +..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+. +..+++|++|++++|++.....
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 66655443 44456777777777777766666666677777777777766644443 5556666677776666665433
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-33 Score=283.99 Aligned_cols=311 Identities=20% Similarity=0.165 Sum_probs=206.2
Q ss_pred CCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcE
Q 048827 111 NLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLV 190 (576)
Q Consensus 111 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 190 (576)
.++++++|++++ +.+....+..+..+++|++|++++|.+.+..+..++++++|++|++++|.+++..|..|+++++|++
T Consensus 43 ~l~~l~~l~l~~-~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEES-CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecC-CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 457777787776 4444333334677777888888877777655567777777778887777777666666777777777
Q ss_pred EEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccC
Q 048827 191 INLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQL 270 (576)
Q Consensus 191 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~ 270 (576)
|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|++|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777777744444457777777777777777766666677777777777777776643 244556666666666655
Q ss_pred cCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCC
Q 048827 271 TGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKF 350 (576)
Q Consensus 271 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 350 (576)
.+ +...++|++|++++|.+..... ...+ +|+.|++++|.+.+. +.+
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~~~----~~~~------------------------~L~~L~l~~n~l~~~-~~l 244 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVVRG----PVNV------------------------ELTILKLQHNNLTDT-AWL 244 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEEEC----CCCS------------------------SCCEEECCSSCCCCC-GGG
T ss_pred cc-----cCCCCcceEEECCCCeeeeccc----cccc------------------------cccEEECCCCCCccc-HHH
Confidence 42 2223455555555554433211 1123 455555555555432 445
Q ss_pred CCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcC
Q 048827 351 TRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLE 430 (576)
Q Consensus 351 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~ 430 (576)
..+++|++|++++|.+++..+..|..+++|++|++++|.+.+....+..+++|++|++++|++... |..+..... |+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~--L~ 321 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDR--LE 321 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTT--CS
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec-CccccccCc--CC
Confidence 556888899999998888888888889999999999998887655567788888888888887743 333444333 77
Q ss_pred EEEccCCcCcccCCCCCCCCCCcEEEccCCcCCc
Q 048827 431 ALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITG 464 (576)
Q Consensus 431 ~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~ 464 (576)
+|++++|.+... + +..+++|+.|++++|++..
T Consensus 322 ~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 322 NLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcccee-C-chhhccCCEEEcCCCCccc
Confidence 777777776543 2 4555566666666666653
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-33 Score=283.95 Aligned_cols=335 Identities=19% Similarity=0.186 Sum_probs=226.6
Q ss_pred CCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEE
Q 048827 136 NLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSL 215 (576)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 215 (576)
.++++++|+++++.+....+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46889999999999884433447889999999999999987666788899999999999998887777788888888888
Q ss_pred EcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCc
Q 048827 216 DFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQ 295 (576)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 295 (576)
++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.. +..+++|++|+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~----- 194 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS----- 194 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECC-----
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecc-----
Confidence 88888888554455677888888888888887666666777777777777777765331 2333444444444
Q ss_pred cccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhh
Q 048827 296 IRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFT 375 (576)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 375 (576)
+|.++... ..++|++|++++|.+... +. .
T Consensus 195 --------------------~n~l~~~~----------------------------~~~~L~~L~l~~n~l~~~-~~--~ 223 (390)
T 3o6n_A 195 --------------------YNLLSTLA----------------------------IPIAVEELDASHNSINVV-RG--P 223 (390)
T ss_dssp --------------------SSCCSEEE----------------------------CCSSCSEEECCSSCCCEE-EC--C
T ss_pred --------------------cccccccC----------------------------CCCcceEEECCCCeeeec-cc--c
Confidence 33332000 013455555555555442 11 1
Q ss_pred CCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcE
Q 048827 376 NMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKV 454 (576)
Q Consensus 376 ~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~ 454 (576)
..++|+.|++++|.+.+. +.+..+++ |++|++++|.+.+..|. +..+++|+.
T Consensus 224 ~~~~L~~L~l~~n~l~~~-~~l~~l~~--------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT-AWLLNYPG--------------------------LVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp CCSSCCEEECCSSCCCCC-GGGGGCTT--------------------------CSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred ccccccEEECCCCCCccc-HHHcCCCC--------------------------ccEEECCCCcCCCcChhHccccccCCE
Confidence 124555666655555422 22333444 55555555555544444 556667777
Q ss_pred EEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcc
Q 048827 455 LNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRL 534 (576)
Q Consensus 455 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 534 (576)
|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|++|++++|+++. ++ +..+++|++|++++|++
T Consensus 277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp EECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCE
T ss_pred EECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCc
Confidence 7777777764 4555566778888888888777 566667777888888888888874 33 66778888888888888
Q ss_pred eecCCCCCCCCCCCcccccCCCCCCCCC
Q 048827 535 CGEIPQGRPYSIFPGSAYAHNLCLCGKP 562 (576)
Q Consensus 535 ~g~iP~~~~~~~l~~~~~~~n~~l~~~~ 562 (576)
.+.-. ...+..+....+.+++..|+.+
T Consensus 352 ~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 352 DCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp EHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred cchhH-HHHHHHHHhhcccccCceeccc
Confidence 75322 2345666777788888888655
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-32 Score=294.81 Aligned_cols=312 Identities=20% Similarity=0.167 Sum_probs=224.0
Q ss_pred CCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcE
Q 048827 111 NLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLV 190 (576)
Q Consensus 111 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 190 (576)
.+.+++++++++ +.+....+..+..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~-~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESS-CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeC-CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 456778888877 5555444445677888888888888887666667888888888888888887766667778888888
Q ss_pred EEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccC
Q 048827 191 INLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQL 270 (576)
Q Consensus 191 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~ 270 (576)
|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 88888887755555567778888888888877777777777777777777777777643 244566777777777665
Q ss_pred cCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCC
Q 048827 271 TGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKF 350 (576)
Q Consensus 271 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 350 (576)
.+ +...++|+.|++++|.+....+. ..+ +|+.|++++|.+.+ ++.+
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~----~~~------------------------~L~~L~L~~n~l~~-~~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGP----VNV------------------------ELTILKLQHNNLTD-TAWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECS----CCS------------------------CCCEEECCSSCCCC-CGGG
T ss_pred cc-----ccCCchhheeeccCCcccccccc----cCC------------------------CCCEEECCCCCCCC-Chhh
Confidence 42 22334556666665554332211 112 45555555555553 2445
Q ss_pred CCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcC
Q 048827 351 TRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLE 430 (576)
Q Consensus 351 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~ 430 (576)
..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+....+..+++|+.|++++|.+.. +|..+...+. |+
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~--L~ 327 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDR--LE 327 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTT--CS
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-cCcccccCCC--CC
Confidence 56689999999999999988999999999999999999998776667778999999999999884 5555555444 88
Q ss_pred EEEccCCcCcccCCCCCCCCCCcEEEccCCcCCcc
Q 048827 431 ALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGH 465 (576)
Q Consensus 431 ~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 465 (576)
+|++++|.+.+. .+..+++|+.|++++|++.+.
T Consensus 328 ~L~L~~N~l~~~--~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 328 NLYLDHNSIVTL--KLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCCCCC--CCCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCCCCCc--ChhhcCCCCEEEeeCCCCCCh
Confidence 888888888754 256677888888888887754
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.7e-32 Score=272.97 Aligned_cols=307 Identities=26% Similarity=0.367 Sum_probs=172.8
Q ss_pred ccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCC
Q 048827 134 LSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQ 213 (576)
Q Consensus 134 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 213 (576)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+++ + ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 446777888888887776 444 37777788888888877773 333 7777777777777777664 2 2466777777
Q ss_pred EEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCc
Q 048827 214 SLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMD 293 (576)
Q Consensus 214 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 293 (576)
+|++++|.+++.. . +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCch-h-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 7777777666432 2 5666666666666665443332 35556666666666665543222 3444444444444443
Q ss_pred CccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchh
Q 048827 294 SQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSF 373 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 373 (576)
+... +. +..+++|+.|++++|.+.+..+
T Consensus 189 l~~~---------------------------~~-----------------------~~~l~~L~~L~l~~n~l~~~~~-- 216 (347)
T 4fmz_A 189 IEDI---------------------------SP-----------------------LASLTSLHYFTAYVNQITDITP-- 216 (347)
T ss_dssp CCCC---------------------------GG-----------------------GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cccc---------------------------cc-----------------------ccCCCccceeecccCCCCCCch--
Confidence 2211 11 1122344444444444444222
Q ss_pred hhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCc
Q 048827 374 FTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLK 453 (576)
Q Consensus 374 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~ 453 (576)
+..+++|++|++++|.+....+ +..+++|++|++++|.+ .+ ++.+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l--------------------------~~-~~~~~~l~~L~ 268 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI--------------------------SD-INAVKDLTKLK 268 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC--------------------------CC-CGGGTTCTTCC
T ss_pred hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc--------------------------CC-ChhHhcCCCcC
Confidence 4444455555555544432211 33333444444443333 22 22344555666
Q ss_pred EEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCc
Q 048827 454 VLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANR 533 (576)
Q Consensus 454 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 533 (576)
.|++++|++++. ..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..| +..+++|++|++++|+
T Consensus 269 ~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 269 MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred EEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 666666666543 346666777777777777766666666677777777777777765444 6667777777777776
Q ss_pred ce
Q 048827 534 LC 535 (576)
Q Consensus 534 l~ 535 (576)
++
T Consensus 345 i~ 346 (347)
T 4fmz_A 345 IK 346 (347)
T ss_dssp --
T ss_pred cc
Confidence 64
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-32 Score=297.72 Aligned_cols=335 Identities=19% Similarity=0.174 Sum_probs=233.1
Q ss_pred CCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEE
Q 048827 136 NLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSL 215 (576)
Q Consensus 136 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 215 (576)
.+.+++.+++++|.+....+..+.++++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 36789999999999885545557889999999999999987777788999999999999999888777788888888888
Q ss_pred EcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCc
Q 048827 216 DFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQ 295 (576)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 295 (576)
++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++.. ++.+++|+.|++++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~---- 201 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY---- 201 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS----
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc----
Confidence 88888888665566778888888888888888777777777778888887777776431 23334444444443
Q ss_pred cccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhh
Q 048827 296 IRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFT 375 (576)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 375 (576)
|.++.. ..+++|++|++++|.+....+..
T Consensus 202 ---------------------n~l~~l----------------------------~~~~~L~~L~ls~n~l~~~~~~~-- 230 (597)
T 3oja_B 202 ---------------------NLLSTL----------------------------AIPIAVEELDASHNSINVVRGPV-- 230 (597)
T ss_dssp ---------------------SCCSEE----------------------------ECCTTCSEEECCSSCCCEEECSC--
T ss_pred ---------------------Cccccc----------------------------cCCchhheeeccCCccccccccc--
Confidence 333200 01134555555555554422111
Q ss_pred CCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcE
Q 048827 376 NMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKV 454 (576)
Q Consensus 376 ~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~ 454 (576)
.++|+.|++++|.+.+ .+.+..+++ |+.|++++|.+.+..|. +..+++|+.
T Consensus 231 -~~~L~~L~L~~n~l~~-~~~l~~l~~--------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 231 -NVELTILKLQHNNLTD-TAWLLNYPG--------------------------LVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp -CSCCCEEECCSSCCCC-CGGGGGCTT--------------------------CSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred -CCCCCEEECCCCCCCC-ChhhccCCC--------------------------CCEEECCCCccCCCCHHHhcCccCCCE
Confidence 1345555555555542 122333344 55555555555555444 666677777
Q ss_pred EEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcc
Q 048827 455 LNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRL 534 (576)
Q Consensus 455 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 534 (576)
|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|++++. | +..+++|++|++++|++
T Consensus 283 L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 283 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred EECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCC
Confidence 7777777774 4556667788888888888887 6777778888888888888888743 3 66788899999999998
Q ss_pred eecCCCCCCCCCCCcccccCCCCCCCCC
Q 048827 535 CGEIPQGRPYSIFPGSAYAHNLCLCGKP 562 (576)
Q Consensus 535 ~g~iP~~~~~~~l~~~~~~~n~~l~~~~ 562 (576)
.+..+. ..+..+....+.+++..|+.+
T Consensus 358 ~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 358 DCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp EHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CChhHH-HHHHHHhhhccccccccCCcc
Confidence 765332 235666777788888889765
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.1e-32 Score=271.70 Aligned_cols=308 Identities=25% Similarity=0.360 Sum_probs=224.4
Q ss_pred cccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCC
Q 048827 108 ALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRN 187 (576)
Q Consensus 108 ~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 187 (576)
.+..+++|++|++++ +.+.. ++ .+..+++|++|++++|.++ .++. +.++++|++|++++|.++. ++ .+.++++
T Consensus 39 ~~~~l~~L~~L~l~~-~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAG-EKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCS-SCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTT
T ss_pred cchhcccccEEEEeC-Ccccc-ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCc
Confidence 356889999999998 55543 44 4888999999999999998 4555 9999999999999999984 44 6999999
Q ss_pred CcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeec
Q 048827 188 LLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSH 267 (576)
Q Consensus 188 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 267 (576)
|++|++++|.+.+. +. +..+++|++|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 99999999999854 33 899999999999999766444 448999999999999999885433 88999999999999
Q ss_pred ccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCC
Q 048827 268 NQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGAL 347 (576)
Q Consensus 268 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 347 (576)
|.+.+. +. +..+++|+.+++++|.+....+ +..+++|++|++++
T Consensus 187 n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~------------------------------- 230 (347)
T 4fmz_A 187 NQIEDI-SP-LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGN------------------------------- 230 (347)
T ss_dssp SCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCS-------------------------------
T ss_pred Cccccc-cc-ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccC-------------------------------
Confidence 999854 33 7778888888887776554322 23334444444444
Q ss_pred CCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccC
Q 048827 348 PKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSS 427 (576)
Q Consensus 348 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~ 427 (576)
|.+++..+ +..+++|++|++++|.+.. .+.+..+++|++|++++|++.+
T Consensus 231 ----------------n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~------------ 279 (347)
T 4fmz_A 231 ----------------NKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISD------------ 279 (347)
T ss_dssp ----------------SCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC------------
T ss_pred ----------------CccCCCcc--hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCC------------
Confidence 33333222 4445555555555554442 1223344444444444444332
Q ss_pred CcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCC
Q 048827 428 FLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSV 507 (576)
Q Consensus 428 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~ 507 (576)
++.+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| +..+++|++|++++
T Consensus 280 ---------------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 280 ---------------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342 (347)
T ss_dssp ---------------CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSC
T ss_pred ---------------ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhh
Confidence 1234456788888888888888888888889999999999999886655 78888999999999
Q ss_pred CcCc
Q 048827 508 NSLT 511 (576)
Q Consensus 508 n~l~ 511 (576)
|+++
T Consensus 343 N~i~ 346 (347)
T 4fmz_A 343 QVIK 346 (347)
T ss_dssp C---
T ss_pred hccc
Confidence 9875
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.5e-33 Score=273.30 Aligned_cols=185 Identities=29% Similarity=0.515 Sum_probs=149.1
Q ss_pred CCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCC-CCCCC-CCCEEEccCCcCccccchhhhhhccCCcCE
Q 048827 354 DSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPD-GLASIDLHSNQITGSLSSIINNRTSSFLEA 431 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~-~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~ 431 (576)
++|++|++++|.+++.+|..+..+++|++|++++|.+.+..+. +..++ .|++|+++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~---------------------- 182 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS---------------------- 182 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC----------------------
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc----------------------
Confidence 4556666666666666777777777777777777777655544 44443 44555554
Q ss_pred EEccCCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcC
Q 048827 432 LDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSL 510 (576)
Q Consensus 432 L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l 510 (576)
+|.+.+.+|. +..+. |++|++++|++++..|..+..+++|++|++++|.+.+.+|. +..+++|++|++++|++
T Consensus 183 ----~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 183 ----RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp ----SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred ----CCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 4444444444 33444 88888888888888888999999999999999999876665 78899999999999999
Q ss_pred cccccccccCCCCCCEEEccCCcceecCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 048827 511 TGKIPTSLLGIRGLRHANFRANRLCGEIPQGRPYSIFPGSAYAHNLCLCGKPLPPC 566 (576)
Q Consensus 511 ~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~~~~~~~l~~~~~~~n~~l~~~~~~~~ 566 (576)
++.+|..+..+++|++|++++|+++|.+|....+++++.+++.+||.+||.|++.|
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 99999999999999999999999999999998999999999999999999999887
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=2.3e-32 Score=272.17 Aligned_cols=275 Identities=21% Similarity=0.281 Sum_probs=232.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCCCCCCC-----CCCCCCCCcCcEEcC--------CCCCCEEEEEcCCCCcCC
Q 048827 31 LSQAPICFEADRLVLQEFKAKILKDTTEILASWM-----GKDCCGGDWEGVVCN--------PATGRVTGLALQRPDREL 97 (576)
Q Consensus 31 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~-----~~~~c~~~w~~v~c~--------~~~~~v~~l~l~~~~~~~ 97 (576)
..+...+..+++.+|.+||.++..++......|. ..++| .|.|+.|+ ....+|+.|+++++.
T Consensus 18 ~~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~--- 92 (328)
T 4fcg_A 18 YFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKATADLLEDATQPGRVALELRSVP--- 92 (328)
T ss_dssp CCC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHHHHHHHHHHTSTTCCEEEEESSC---
T ss_pred eeeccccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhhhHHHHhcccccceeEEEccCCC---
Confidence 4445566778999999999988657777778883 56788 99999994 235789999999877
Q ss_pred CCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCC
Q 048827 98 GMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGP 177 (576)
Q Consensus 98 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~ 177 (576)
+ ..+|+.+.++++|++|++++ +.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|++.+.
T Consensus 93 ---l-~~lp~~l~~l~~L~~L~L~~-n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 93 ---L-PQFPDQAFRLSHLQHMTIDA-AGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp ---C-SSCCSCGGGGTTCSEEEEES-SCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred ---c-hhcChhhhhCCCCCEEECCC-CCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence 3 47888899999999999998 6666 78888999999999999999998 8898999999999999999888888
Q ss_pred CCccCCC---------CCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccc
Q 048827 178 IPPSLGN---------LRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSG 248 (576)
Q Consensus 178 ~p~~l~~---------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 248 (576)
+|..+.. +++|++|++++|.++ .+|..+.++++|++|++++|.+++ +|..+..+++|++|++++|.+.+
T Consensus 166 ~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCC
T ss_pred cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchh
Confidence 8887764 889999999999888 778888999999999999998884 66678889999999999988888
Q ss_pred cCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 249 KFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 249 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|. .+..+++|+.+++..+.+.
T Consensus 244 ~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGGGSC
T ss_pred hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHHHHH
Confidence 8888888999999999999888888888888899999999999888888887 7788888888888776543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.4e-33 Score=290.62 Aligned_cols=358 Identities=18% Similarity=0.169 Sum_probs=161.0
Q ss_pred CCCEEEccCCCCCcCCCcc-ccCCCCCCEEEccCCcCCC----CCCccCCCCCCCcEEEccCCcccccCcccc-cCCC--
Q 048827 139 RLTQLILEDNSLEGSIPPG-LGHLSLLQTLSLGGNRLKG----PIPPSLGNLRNLLVINLGKNSVSGPIPPTF-ISFL-- 210 (576)
Q Consensus 139 ~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~-- 210 (576)
+|++|+++++.++...... +..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 3445555555544222111 3445555555555555442 123344455555555555555543322222 2233
Q ss_pred --CCCEEEcccCCCcc----cCCccccCCCCCCEEEccCCcccccCchhhc-----CCCCCCeEEeecccCcCCC----h
Q 048827 211 --SLQSLDFSFNLLSG----FIPDALVRSQNLTYIDLSNNQFSGKFPISIC-----GLANLQDLSLSHNQLTGTI----P 275 (576)
Q Consensus 211 --~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~L~~~~~~~~~----~ 275 (576)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 46666666665553 3355555666666666666655543333322 1345666666666655432 3
Q ss_pred hhhcCCCCCcEEEccCCcCccccCcccc----CCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCC
Q 048827 276 EQIGGLRSLNSLKLSEMDSQIRLPIILG----RGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFT 351 (576)
Q Consensus 276 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 351 (576)
..+..+++|++|++++|.+......... ...++|++|++++|.++...... ....+.
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-------------------l~~~l~ 224 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD-------------------LCGIVA 224 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH-------------------HHHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH-------------------HHHHHH
Confidence 3344455666666665554332211000 11234444444444333100000 000111
Q ss_pred CCCCccEEEccCCcCCCccch-----hhhCCCCCCeEEccCCcceee-----CCCCCCCCCCCEEEccCCcCccccchhh
Q 048827 352 RPDSLSSIDLSNNLLTDGISS-----FFTNMSSLQNIKLSNNQLKFD-----VSEIRFPDGLASIDLHSNQITGSLSSII 421 (576)
Q Consensus 352 ~~~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~~~~~-----~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 421 (576)
.+++|++|++++|.+++.... .+..+++|++|++++|.++.. ...+..+++|++|++++|.+.+..+..+
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 235566666666655543211 112345555555555554431 1113334455555555555443333222
Q ss_pred hhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCcc----ChhhhhcCccCCeeeCccCcCCccCcccccC-
Q 048827 422 NNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGH----IPSSISNLIELEMLDIQRNQIAGTIPTSLGL- 496 (576)
Q Consensus 422 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~- 496 (576)
...- ....++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 305 ~~~l--------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 305 CETL--------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp HHHH--------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred HHHh--------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 2210 11123555555555555433 2344444555555555555554433322221
Q ss_pred ----CCCCCEEeCCCCcCcc----cccccccCCCCCCEEEccCCcce
Q 048827 497 ----LSKLQWLDVSVNSLTG----KIPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 497 ----l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
.++|++|++++|++++ .+|..+..+++|++|++++|++.
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 3455555555555554 44455555555555555555554
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.8e-33 Score=290.94 Aligned_cols=333 Identities=20% Similarity=0.225 Sum_probs=170.3
Q ss_pred ccCCCCCCEEEccCCCCCc----CCCccccCCCCCCEEEccCCcCCCCCCccC-CCCC----CCcEEEccCCcccc----
Q 048827 134 LSNLTRLTQLILEDNSLEG----SIPPGLGHLSLLQTLSLGGNRLKGPIPPSL-GNLR----NLLVINLGKNSVSG---- 200 (576)
Q Consensus 134 l~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l-~~l~----~L~~L~l~~n~~~~---- 200 (576)
+..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+ ..++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 4444555555555555442 123334444555555555554432222111 1122 45555555555442
Q ss_pred cCcccccCCCCCCEEEcccCCCcccCCcccc-----CCCCCCEEEccCCcccccC----chhhcCCCCCCeEEeecccCc
Q 048827 201 PIPPTFISFLSLQSLDFSFNLLSGFIPDALV-----RSQNLTYIDLSNNQFSGKF----PISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 201 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~L~~~~~~ 271 (576)
.++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..+..+++|++|++++|.+.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 2344455555555555555554433222221 1344555555555555422 333444555555555555554
Q ss_pred CCChhhhc-----CCCCCcEEEccCCcCccc----cCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCc
Q 048827 272 GTIPEQIG-----GLRSLNSLKLSEMDSQIR----LPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCK 342 (576)
Q Consensus 272 ~~~~~~l~-----~l~~L~~L~L~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 342 (576)
+..+..+. ..++|++|++++|.+... ++. .+..+++|++|++++|.++...+..
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~---------------- 246 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNKLGDVGMAE---------------- 246 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSSBCHHHHHHH----------------
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCCcCChHHHHH----------------
Confidence 33222222 234566666665554432 111 2334555555555555443100000
Q ss_pred CccCCCC-CCCCCCccEEEccCCcCCCc----cchhhhCCCCCCeEEccCCcceeeCCC------CCCCCCCCEEEccCC
Q 048827 343 LRGALPK-FTRPDSLSSIDLSNNLLTDG----ISSFFTNMSSLQNIKLSNNQLKFDVSE------IRFPDGLASIDLHSN 411 (576)
Q Consensus 343 ~~~~~~~-~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~~~L~~L~ls~n 411 (576)
..+. +...++|++|++++|.+++. ++..+..+++|++|++++|.+...... ....++|++|++++|
T Consensus 247 ---l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 247 ---LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp ---HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ---HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 0001 11246788888888888764 566777899999999999988633221 223468999999999
Q ss_pred cCcccc----chhhhhhccCCcCEEEccCCcCcccCCC-----CC-CCCCCcEEEccCCcCCc----cChhhhhcCccCC
Q 048827 412 QITGSL----SSIINNRTSSFLEALDVSGNHFSGEIPE-----FT-EGLSLKVLNIGSNKITG----HIPSSISNLIELE 477 (576)
Q Consensus 412 ~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~-~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~ 477 (576)
.+++.. +..+...+ .|++|++++|.+.+..+. +. ..++|++|++++|++++ .++..+..+++|+
T Consensus 324 ~l~~~~~~~l~~~l~~~~--~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNR--FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp CCBGGGHHHHHHHHHHCS--SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCchHHHHHHHHHHhhCC--CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 887653 23332222 266666666666543222 11 14456666666666654 4455555566666
Q ss_pred eeeCccCcCCc
Q 048827 478 MLDIQRNQIAG 488 (576)
Q Consensus 478 ~L~Ls~n~~~~ 488 (576)
+|++++|++++
T Consensus 402 ~L~l~~N~i~~ 412 (461)
T 1z7x_W 402 ELDLSNNCLGD 412 (461)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCCCCH
Confidence 66666665553
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.9e-28 Score=241.71 Aligned_cols=149 Identities=22% Similarity=0.314 Sum_probs=103.8
Q ss_pred CCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEc
Q 048827 138 TRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDF 217 (576)
Q Consensus 138 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 217 (576)
.++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36888888888887 6676554 67888888888888666667888888888888888888777778888888888888
Q ss_pred ccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcC--CChhhhcCCCCCcEEEccCC
Q 048827 218 SFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTG--TIPEQIGGLRSLNSLKLSEM 292 (576)
Q Consensus 218 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~L~~~ 292 (576)
++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 888777 3444432 677777777777776666666777777777777766642 33344444444444444443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.1e-28 Score=244.62 Aligned_cols=127 Identities=23% Similarity=0.261 Sum_probs=80.6
Q ss_pred CCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcc
Q 048827 139 RLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFS 218 (576)
Q Consensus 139 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 218 (576)
++++++++++.+. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777777777776 5665553 567777777777765555567777777777777777766666666777777777777
Q ss_pred cCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCc
Q 048827 219 FNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~ 271 (576)
+|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 76666 3343332 56666666666665444444555555666655555553
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5e-28 Score=241.64 Aligned_cols=273 Identities=21% Similarity=0.261 Sum_probs=196.3
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCC
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG 183 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 183 (576)
.+|..+. +++++|++++ +.+++..+..|+++++|++|++++|.+++..|..++++++|++|++++|.++ .+|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC
T ss_pred ccCccCC--CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc
Confidence 4554443 6788999998 6677666668888999999999999988777888999999999999999888 5666554
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcc--cCCccccCCCCCCEEEccCCcccccCchhhcCCCCCC
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSG--FIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQ 261 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 261 (576)
++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|+
T Consensus 121 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~ 195 (330)
T 1xku_A 121 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLT 195 (330)
T ss_dssp --TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCS
T ss_pred --ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCC
Confidence 789999999998887777788889999999999988853 56777888899999999998887 4555443 7888
Q ss_pred eEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCC-CCCccEEEccC
Q 048827 262 DLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIK-DRPLSNVNLAG 340 (576)
Q Consensus 262 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~ 340 (576)
+|++++|.+.+..+..+..+++|++|++++|.+....+. .+..+++|++|++++|.++ .+|..+. ..+|++|++++
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCS
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCC
Confidence 888888888877777888888888888888887765544 5667778888888888776 4554333 23666666666
Q ss_pred CcCccCCCCCC-------CCCCccEEEccCCcCCC--ccchhhhCCCCCCeEEccCC
Q 048827 341 CKLRGALPKFT-------RPDSLSSIDLSNNLLTD--GISSFFTNMSSLQNIKLSNN 388 (576)
Q Consensus 341 ~~~~~~~~~~~-------~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n 388 (576)
|.+.+..+... ..+.++.|++++|.+.. ..|..|..+++++.+++++|
T Consensus 273 N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 66654433211 11445555555555432 33444555555555555544
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.4e-28 Score=242.21 Aligned_cols=273 Identities=21% Similarity=0.285 Sum_probs=199.9
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCC
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG 183 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 183 (576)
.+|..+. ++|++|++++ +.+.+..|..|.++++|++|++++|.+++..|..++++++|++|++++|.++ .+|..+.
T Consensus 47 ~ip~~~~--~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~ 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC
T ss_pred ccCCCCC--CCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc
Confidence 4555543 6888899988 6676666778888899999999999888777888888999999999998888 5666555
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCc--ccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCC
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLS--GFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQ 261 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 261 (576)
++|++|++++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|+
T Consensus 123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~ 196 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLN 196 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCS
T ss_pred --ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCC
Confidence 78899999998888766677888889999999888885 3566777777 88888898888874 555543 6888
Q ss_pred eEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcC-CCCCccEEEccC
Q 048827 262 DLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWI-KDRPLSNVNLAG 340 (576)
Q Consensus 262 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~ 340 (576)
+|++++|.+.+..+..+..+++|++|++++|.+....+. .+..+++|++|++++|.++ .+|..+ ...+|++|++++
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG-SLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-GGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCS
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-HhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCC
Confidence 888888888877777788888888888888887765554 5677788888888888776 555533 333677777777
Q ss_pred CcCccCCCCCC-C------CCCccEEEccCCcCC--CccchhhhCCCCCCeEEccCCc
Q 048827 341 CKLRGALPKFT-R------PDSLSSIDLSNNLLT--DGISSFFTNMSSLQNIKLSNNQ 389 (576)
Q Consensus 341 ~~~~~~~~~~~-~------~~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~ 389 (576)
|.+.+..+... . .+.|+.|++++|.+. +..+..|..+++|+.+++++|+
T Consensus 274 N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77665443311 1 245667777776665 4455566666666666666553
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.8e-31 Score=287.19 Aligned_cols=422 Identities=14% Similarity=0.077 Sum_probs=223.8
Q ss_pred cCccccCCCCCCEEecCCCCCCc--cCCccccc------------CCCCCCEEEccCCCCCcCCCccccC-CC-CCCEEE
Q 048827 105 LPAALGNLHFLEVMVISGMKHIT--GPIPESLS------------NLTRLTQLILEDNSLEGSIPPGLGH-LS-LLQTLS 168 (576)
Q Consensus 105 ~~~~l~~l~~L~~L~L~~~~~~~--~~~~~~l~------------~l~~L~~L~l~~~~~~~~~p~~l~~-l~-~L~~L~ 168 (576)
.+..+..+++|++|++++|..+. +.+|..++ .+++|++|++++|.+++..+..+.. ++ +|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 34456778889999998754432 22332222 6788888888888777655555555 33 488888
Q ss_pred ccCCcC-CC-CCCccCCCCCCCcEEEccCCccccc----CcccccCCCCCCEEEcccCCCc----ccCCccccCCCCCCE
Q 048827 169 LGGNRL-KG-PIPPSLGNLRNLLVINLGKNSVSGP----IPPTFISFLSLQSLDFSFNLLS----GFIPDALVRSQNLTY 238 (576)
Q Consensus 169 L~~~~~-~~-~~p~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~ 238 (576)
+++|.. .. .++....++++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 888762 11 1122234678888888888877655 3344567788888888888776 233444567788888
Q ss_pred EEccCCcccccCchhhcCCCCCCeEEeecccCc---CCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECc
Q 048827 239 IDLSNNQFSGKFPISICGLANLQDLSLSHNQLT---GTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLS 315 (576)
Q Consensus 239 L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~---~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 315 (576)
|++++|.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.++++++. ...++. .+..+++|++|+++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPI-LFPFAAQIRKLDLL 301 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGG-GGGGGGGCCEEEET
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHH-HHhhcCCCcEEecC
Confidence 8888887773 6677777888888888753322 2233455666777777776642 222232 44556677777777
Q ss_pred CCCCCCCCCCCc-CCCCCccEEEccCCcCccCCCCC-CCCCCccEEEccC-----------CcCCCccch-hhhCCCCCC
Q 048827 316 YNNLSLGTVPNW-IKDRPLSNVNLAGCKLRGALPKF-TRPDSLSSIDLSN-----------NLLTDGISS-FFTNMSSLQ 381 (576)
Q Consensus 316 ~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~Ls~-----------n~l~~~~~~-~~~~l~~L~ 381 (576)
+|.++...++.. ...++|++|++.++...+.++.+ ..+++|++|++++ +.+++.... .+..+++|+
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 766542222221 22335666666522111111111 1235566666652 334332221 223455666
Q ss_pred eEEccCCcceeeCCC-CC-CCCCCCEEEcc----CCcCccc-----cchhhhhhccCCcCEEEccCCc--CcccCCC--C
Q 048827 382 NIKLSNNQLKFDVSE-IR-FPDGLASIDLH----SNQITGS-----LSSIINNRTSSFLEALDVSGNH--FSGEIPE--F 446 (576)
Q Consensus 382 ~L~L~~n~~~~~~~~-~~-~~~~L~~L~ls----~n~~~~~-----~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~--~ 446 (576)
+|+++.+.+++.... +. .+++|++|+++ .+.+++. ++..+...+ +|++|++++|. +++..+. .
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~--~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK--KLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT--TCCEEEEECCGGGCCHHHHHHHH
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC--CCCEEEEecCCCCccHHHHHHHH
Confidence 666555444322211 21 24555555554 3334332 222222222 25555554432 3322221 1
Q ss_pred CCCCCCcEEEccCCcCCc-cChhhhhcCccCCeeeCccCcCCcc-CcccccCCCCCCEEeCCCCcCcccccccc-cCCCC
Q 048827 447 TEGLSLKVLNIGSNKITG-HIPSSISNLIELEMLDIQRNQIAGT-IPTSLGLLSKLQWLDVSVNSLTGKIPTSL-LGIRG 523 (576)
Q Consensus 447 ~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~ 523 (576)
..+++|++|++++|++++ .++..+..+++|++|+|++|++++. ++..+..+++|++|++++|++++.....+ ..++.
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence 224555555555555553 2233344555555555555555433 22223345555555555555554322222 23444
Q ss_pred CCEEEccC
Q 048827 524 LRHANFRA 531 (576)
Q Consensus 524 L~~L~l~~ 531 (576)
+....+..
T Consensus 540 l~~~~~~~ 547 (592)
T 3ogk_B 540 WNIELIPS 547 (592)
T ss_dssp EEEEEECC
T ss_pred cEEEEecC
Confidence 44444433
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.2e-30 Score=280.14 Aligned_cols=402 Identities=12% Similarity=0.087 Sum_probs=294.9
Q ss_pred CcccccCCCCCCEEEccCCCC---CcCCCcccc------------CCCCCCEEEccCCcCCCCCCccCCC-CC-CCcEEE
Q 048827 130 IPESLSNLTRLTQLILEDNSL---EGSIPPGLG------------HLSLLQTLSLGGNRLKGPIPPSLGN-LR-NLLVIN 192 (576)
Q Consensus 130 ~~~~l~~l~~L~~L~l~~~~~---~~~~p~~l~------------~l~~L~~L~L~~~~~~~~~p~~l~~-l~-~L~~L~ 192 (576)
.+..+.++++|++|+++++.. .+.+|..++ ++++|++|++++|.+++..+..+.. ++ +|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 345567889999999988642 123443333 6899999999999887655555655 34 499999
Q ss_pred ccCCcc-cc-cCcccccCCCCCCEEEcccCCCccc----CCccccCCCCCCEEEccCCccc----ccCchhhcCCCCCCe
Q 048827 193 LGKNSV-SG-PIPPTFISFLSLQSLDFSFNLLSGF----IPDALVRSQNLTYIDLSNNQFS----GKFPISICGLANLQD 262 (576)
Q Consensus 193 l~~n~~-~~-~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~ 262 (576)
+++|.. .. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.++ +.++..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 999872 21 2233345889999999999988766 3345567899999999999987 334455678899999
Q ss_pred EEeecccCcCCChhhhcCCCCCcEEEccCCcCccc--cCccccCCCCCCCEEECcCCCCCCCCCCCcCCCC-CccEEEcc
Q 048827 263 LSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIR--LPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDR-PLSNVNLA 339 (576)
Q Consensus 263 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~ 339 (576)
|++.+|.+.+ ++..+..+++|++|+++.+..... .....+..+++|+.++++++.. ..+|...... +|++|+++
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP--NEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT--TTGGGGGGGGGGCCEEEET
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch--hHHHHHHhhcCCCcEEecC
Confidence 9999999884 778889999999999986433211 1112557788999999988533 4666665444 99999999
Q ss_pred CCcCccCCC-C-CCCCCCccEEEccCCcCCC-ccchhhhCCCCCCeEEccC-----------Ccceee-CCC-CCCCCCC
Q 048827 340 GCKLRGALP-K-FTRPDSLSSIDLSNNLLTD-GISSFFTNMSSLQNIKLSN-----------NQLKFD-VSE-IRFPDGL 403 (576)
Q Consensus 340 ~~~~~~~~~-~-~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~-----------n~~~~~-~~~-~~~~~~L 403 (576)
+|.+.+... . +..+++|++|+++ +.+.+ .++..+..+++|++|++++ +.++.. ... ...+++|
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 998654322 1 3567999999999 44443 3444456789999999994 344321 111 3457899
Q ss_pred CEEEccCCcCccccchhhhh-hccCCcCEEEcc----CCcCccc-----CCC-CCCCCCCcEEEccCCc--CCccChhhh
Q 048827 404 ASIDLHSNQITGSLSSIINN-RTSSFLEALDVS----GNHFSGE-----IPE-FTEGLSLKVLNIGSNK--ITGHIPSSI 470 (576)
Q Consensus 404 ~~L~ls~n~~~~~~~~~~~~-~~~~~L~~L~l~----~n~~~~~-----~~~-~~~~~~L~~L~L~~n~--l~~~~~~~l 470 (576)
++|+++.+.+++.....+.. .+ +|+.|+++ .+.+++. ++. +..+++|+.|+++.|. +++..+..+
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~--~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLK--NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCC--SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCC--CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 99999989998776666554 43 49999997 4556543 112 5568899999998654 666655555
Q ss_pred hc-CccCCeeeCccCcCCc-cCcccccCCCCCCEEeCCCCcCccc-ccccccCCCCCCEEEccCCcceec
Q 048827 471 SN-LIELEMLDIQRNQIAG-TIPTSLGLLSKLQWLDVSVNSLTGK-IPTSLLGIRGLRHANFRANRLCGE 537 (576)
Q Consensus 471 ~~-l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~g~ 537 (576)
.. +++|++|+|++|.+++ .++..+..+++|++|++++|++++. ++..+..+++|++|++++|++++.
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 44 8999999999999986 3456668899999999999998764 445556799999999999998754
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=239.94 Aligned_cols=268 Identities=20% Similarity=0.187 Sum_probs=176.0
Q ss_pred eecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccC
Q 048827 103 GTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSL 182 (576)
Q Consensus 103 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l 182 (576)
..+|..+. ++|++|++++ +.+++..+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+
T Consensus 44 ~~iP~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 44 NSIPSGLT--EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp SSCCTTCC--TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred cccccccc--ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 34555443 4777888877 55665545567777778888887777776666667777777777777777774333346
Q ss_pred CCCCCCcEEEccCCcccccCc-ccccCCCCCCEEEcccC-CCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCC
Q 048827 183 GNLRNLLVINLGKNSVSGPIP-PTFISFLSLQSLDFSFN-LLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANL 260 (576)
Q Consensus 183 ~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 260 (576)
.++++|++|++++|.+.+..+ ..+..+++|++|++++| .++...+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 777777777777777764333 36677777777777776 3554555666677777777777777766666667777777
Q ss_pred CeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccC
Q 048827 261 QDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAG 340 (576)
Q Consensus 261 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 340 (576)
++|++++|.+.......+..+++|++|++++|.+....+. .
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------------~-------------- 241 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-------------------------E-------------- 241 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------------------------------
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCcccccccc-------------------------c--------------
Confidence 7777777766422222233455555555555543322110 0
Q ss_pred CcCccCCCCCCCCCCccEEEccCCcCCC----ccchhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCcc
Q 048827 341 CKLRGALPKFTRPDSLSSIDLSNNLLTD----GISSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITG 415 (576)
Q Consensus 341 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~ 415 (576)
++.....+.++.++++++.+.+ .+|..+..+++|++|++++|.+...... +..+++|++|++++|++.+
T Consensus 242 ------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 242 ------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp -----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 0001112456666666666665 3677788999999999999999855444 5789999999999999998
Q ss_pred ccc
Q 048827 416 SLS 418 (576)
Q Consensus 416 ~~~ 418 (576)
..+
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 776
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.1e-26 Score=226.29 Aligned_cols=221 Identities=20% Similarity=0.318 Sum_probs=157.4
Q ss_pred CCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcE
Q 048827 111 NLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLV 190 (576)
Q Consensus 111 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 190 (576)
..+++++|++++ +.++ .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++
T Consensus 79 ~~~~l~~L~L~~-n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRS-VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEES-SCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cccceeEEEccC-CCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 357788888887 5555 67777888888888888888888 78888888888888888888887 67878888888888
Q ss_pred EEccCCcccccCcccccC---------CCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCC
Q 048827 191 INLGKNSVSGPIPPTFIS---------FLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQ 261 (576)
Q Consensus 191 L~l~~n~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 261 (576)
|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence 888887777777766554 777777777777776 66666777777777777777776 3555677777777
Q ss_pred eEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCC-CccEEEcc
Q 048827 262 DLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDR-PLSNVNLA 339 (576)
Q Consensus 262 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~ 339 (576)
+|++++|.+.+.+|..++.+++|++|++++|.+.+.+|. .+..+++|++|++++|.+. +.+|..+... +|+.+++.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~-~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTC-CCCCGGGGGSCTTCEEECC
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCch-hhccHHHhhccCceEEeCC
Confidence 777777777767777777777777777777766666665 4556666666666666555 4444433322 34444443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.1e-26 Score=225.21 Aligned_cols=229 Identities=20% Similarity=0.177 Sum_probs=179.2
Q ss_pred CCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcC--CCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcE
Q 048827 113 HFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGS--IPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLV 190 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 190 (576)
++|++|++++ +.++...+..|+++++|++|++++|.++.. .+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 5788888888 556643344578888888888888887732 2566677888888888888887 56777888888888
Q ss_pred EEccCCcccccCc-ccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccc-cCchhhcCCCCCCeEEeecc
Q 048827 191 INLGKNSVSGPIP-PTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSG-KFPISICGLANLQDLSLSHN 268 (576)
Q Consensus 191 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~~ 268 (576)
|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 8888888876554 578888888888888888887778888888888888888888875 46777888888888888888
Q ss_pred cCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCC-cCCCC-CccEEEccCCcCcc
Q 048827 269 QLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPN-WIKDR-PLSNVNLAGCKLRG 345 (576)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~-~L~~L~l~~~~~~~ 345 (576)
.+++..|..+..+++|++|++++|.+....+. .+..+++|++|++++|.++ +..+. +...+ +|++|++++|.+..
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCC-BCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChh-hccCcccCCEeECCCCCCc-ccCHHHHHhhhccCCEEEccCCCeec
Confidence 88877777888888888888888887765544 5677888899999988887 33443 33443 88999999988764
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.5e-26 Score=222.52 Aligned_cols=206 Identities=25% Similarity=0.230 Sum_probs=100.4
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCC-CcccCCccccCCCCCCEEE
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNL-LSGFIPDALVRSQNLTYID 240 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ 240 (576)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|. ++...+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 344444444444443333344444444444444444444444444444444444444443 3333344444455555555
Q ss_pred ccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 241 LSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 241 l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
+++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+....+. .+..+++|++|++++|.++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH-HhcCccccCEEECCCCccc
Confidence 555555444444444555555555555555433333344444444444444443322111 2233333444444333332
Q ss_pred CCCCCCcCCCCCccEEEccCCcCccCCC-CCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCccee
Q 048827 321 LGTVPNWIKDRPLSNVNLAGCKLRGALP-KFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKF 392 (576)
Q Consensus 321 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 392 (576)
+..+ .+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 191 ------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 191 ------------------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ------------------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ------------------------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 2212 23334667777777777776666667777777777777776653
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=5.7e-26 Score=224.22 Aligned_cols=246 Identities=24% Similarity=0.279 Sum_probs=130.7
Q ss_pred EEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCccccc--CcccccCCCCCCEEEccc
Q 048827 142 QLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGP--IPPTFISFLSLQSLDFSF 219 (576)
Q Consensus 142 ~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~ 219 (576)
.++++++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4455555544 4444332 4555555555555522222345555555555555555422 234444555566666655
Q ss_pred CCCcccCCccccCCCCCCEEEccCCcccccCc-hhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccc-
Q 048827 220 NLLSGFIPDALVRSQNLTYIDLSNNQFSGKFP-ISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIR- 297 (576)
Q Consensus 220 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~- 297 (576)
|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 5555 344445556666666666665553332 3455556666666666665555555555556666666666555442
Q ss_pred cCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCC-CCCCCCCccEEEccCCcCCCccchhhhC
Q 048827 298 LPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALP-KFTRPDSLSSIDLSNNLLTDGISSFFTN 376 (576)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 376 (576)
.+. .+..+++|++|++++|.++ +..+ .+..+++|++|++++|.+++..+..+..
T Consensus 167 ~~~-~~~~l~~L~~L~Ls~n~l~------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 167 LPD-IFTELRNLTFLDLSQCQLE------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp ECS-CCTTCTTCCEEECTTSCCC------------------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chh-HHhhCcCCCEEECCCCCcC------------------------CcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 222 3444555555555555443 2211 1223355666666666666555555666
Q ss_pred CCCCCeEEccCCcceeeCCC-CCCC-CCCCEEEccCCcCccc
Q 048827 377 MSSLQNIKLSNNQLKFDVSE-IRFP-DGLASIDLHSNQITGS 416 (576)
Q Consensus 377 l~~L~~L~L~~n~~~~~~~~-~~~~-~~L~~L~ls~n~~~~~ 416 (576)
+++|+.|++++|.+.+..+. +..+ ++|++|++++|++.+.
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 66666666666666655443 4444 3677777777776654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4e-25 Score=230.43 Aligned_cols=235 Identities=23% Similarity=0.218 Sum_probs=165.4
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCC
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG 183 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 183 (576)
.+|..+. +++++|+|++ +.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.++...+..|.
T Consensus 68 ~iP~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp SCCSCCC--TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred ccCCCCC--CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 3444433 5777788877 666666677777788888888888877766667777788888888888877755555677
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCC-CcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCe
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNL-LSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQD 262 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 262 (576)
.+++|++|++++|.+....+..+.++++|++|++++|. +....+..+..+++|++|++++|.+++ +| .+..+++|++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEE 222 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccE
Confidence 77888888888887776666677777888888887743 333333457777788888888887773 33 4667777888
Q ss_pred EEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCc
Q 048827 263 LSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCK 342 (576)
Q Consensus 263 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 342 (576)
|++++|.+.+..|..|..+++|++|++++|.+....+. .+..+++|++|++++|.++......+....+|+.|++++|.
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 88888887776777777778888888887777665554 56777788888888887762221222334478888888776
Q ss_pred Cc
Q 048827 343 LR 344 (576)
Q Consensus 343 ~~ 344 (576)
+.
T Consensus 302 ~~ 303 (452)
T 3zyi_A 302 WN 303 (452)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=8.9e-25 Score=226.96 Aligned_cols=248 Identities=23% Similarity=0.285 Sum_probs=168.8
Q ss_pred CCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcc
Q 048827 139 RLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFS 218 (576)
Q Consensus 139 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 218 (576)
..+.++..+..++ .+|..+. +++++|++++|.+....+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3457788888877 6777664 678888888888887667778888888888888888887777778888888888888
Q ss_pred cCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCC-hhhhcCCCCCcEEEccCCcCccc
Q 048827 219 FNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTI-PEQIGGLRSLNSLKLSEMDSQIR 297 (576)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~ 297 (576)
+|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|...+.+ +..|..+++|++|++++|
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n----- 195 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC----- 195 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-----
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-----
Confidence 88877666666777777777777777777555556666777777777664332222 223445555555555554
Q ss_pred cCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCC-CCCCCCccEEEccCCcCCCccchhhhC
Q 048827 298 LPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPK-FTRPDSLSSIDLSNNLLTDGISSFFTN 376 (576)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 376 (576)
.++ .+|.+....+|++|++++|.+.+..+. +..+++|++|++++|.+++..+..|.+
T Consensus 196 --------------------~l~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 196 --------------------NLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp --------------------CCS--SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred --------------------cCc--cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 443 334444444566666666655554433 445577777777777777776777777
Q ss_pred CCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccc
Q 048827 377 MSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGS 416 (576)
Q Consensus 377 l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~ 416 (576)
+++|+.|++++|.++...+. +..+++|+.|++++|++...
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 77777777777777755544 56677777777777776543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=9.2e-25 Score=227.66 Aligned_cols=250 Identities=20% Similarity=0.226 Sum_probs=168.9
Q ss_pred CCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcc
Q 048827 139 RLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFS 218 (576)
Q Consensus 139 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 218 (576)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3467788877777 6776554 678888888888887677778888888888888888877777777777788888887
Q ss_pred cCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCcccc
Q 048827 219 FNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRL 298 (576)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 298 (576)
+|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++|.. ...+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~------------------------l~~i 187 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK------------------------LEYI 187 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT------------------------CCEE
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC------------------------cccc
Confidence 7777766666677777777777777777655455566666666666665332 2222
Q ss_pred CccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCC-CCCCCCccEEEccCCcCCCccchhhhCC
Q 048827 299 PIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPK-FTRPDSLSSIDLSNNLLTDGISSFFTNM 377 (576)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 377 (576)
+...+..+++|++|++++|.++ .+|.+....+|+.|++++|.+.+..+. +..+++|++|++++|.+++..+..|..+
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCS--SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ChhhccCCCCCCEEECCCCccc--ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 2223444555555555555554 334444444666666666666555443 4455778888888888877777777777
Q ss_pred CCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCcccc
Q 048827 378 SSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSL 417 (576)
Q Consensus 378 ~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~ 417 (576)
++|+.|++++|.+.+..+. +..+++|+.|++++|++...-
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 8888888888877755544 566777788888777776443
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=224.32 Aligned_cols=275 Identities=20% Similarity=0.192 Sum_probs=154.4
Q ss_pred CCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEE
Q 048827 185 LRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLS 264 (576)
Q Consensus 185 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 264 (576)
++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444555677776666 4454433 3677777777777765555677777777777777777666566666777777777
Q ss_pred eecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCc
Q 048827 265 LSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLR 344 (576)
Q Consensus 265 L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 344 (576)
+++|.+++..+..+..+++|++|++++|.+........+.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~---------------------------------------- 146 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---------------------------------------- 146 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT----------------------------------------
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc----------------------------------------
Confidence 7777666444444555555555555555443211101122
Q ss_pred cCCCCCCCCCCccEEEccCC-cCCCccchhhhCCCCCCeEEccCCcceeeCCC-CCCCCCCCEEEccCCcCccccchhhh
Q 048827 345 GALPKFTRPDSLSSIDLSNN-LLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE-IRFPDGLASIDLHSNQITGSLSSIIN 422 (576)
Q Consensus 345 ~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~ 422 (576)
.+++|++|++++| .+.+..+..|..+++|++|++++|.+.+..+. +..+++|++|++++|.+.........
T Consensus 147 -------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 147 -------HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219 (353)
T ss_dssp -------TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred -------cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh
Confidence 2344444555444 23343344555556666666666665555333 55666666666666666443333333
Q ss_pred hhccCCcCEEEccCCcCcccCCC----CCCCCCCcEEEccCCcCCc----cChhhhhcCccCCeeeCccCcCCccCccc-
Q 048827 423 NRTSSFLEALDVSGNHFSGEIPE----FTEGLSLKVLNIGSNKITG----HIPSSISNLIELEMLDIQRNQIAGTIPTS- 493 (576)
Q Consensus 423 ~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~- 493 (576)
.... |++|++++|.+.+..+. ......++.++++++.+.+ .+|..+..+++|++|++++|.++ .+|..
T Consensus 220 ~~~~--L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~ 296 (353)
T 2z80_A 220 VTSS--VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGI 296 (353)
T ss_dssp HTTT--EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTT
T ss_pred hccc--ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHH
Confidence 3333 77777777777654332 2234456666666666554 24455555566666666666555 34433
Q ss_pred ccCCCCCCEEeCCCCcCcc
Q 048827 494 LGLLSKLQWLDVSVNSLTG 512 (576)
Q Consensus 494 l~~l~~L~~L~L~~n~l~~ 512 (576)
+..+++|++|++++|++.+
T Consensus 297 ~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TTTCTTCCEEECCSSCBCC
T ss_pred HhcCCCCCEEEeeCCCccC
Confidence 3555555555555555554
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.6e-27 Score=231.37 Aligned_cols=248 Identities=21% Similarity=0.220 Sum_probs=167.7
Q ss_pred cCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCC-CcCCCcccc-------CCCCCCEEEccCCcCCCCCCcc
Q 048827 110 GNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSL-EGSIPPGLG-------HLSLLQTLSLGGNRLKGPIPPS 181 (576)
Q Consensus 110 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~p~~l~-------~l~~L~~L~L~~~~~~~~~p~~ 181 (576)
+..++|++|++++ +.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++..|..
T Consensus 40 ~~~~~L~~l~l~~-n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRV-DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHC-CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeecc-ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3456677788877 444 566655544 77788888877 335665555 6888888888888888777777
Q ss_pred C--CCCCCCcEEEccCCcccccCcccccCC-----CCCCEEEcccCCCcccCCccccCCCCCCEEEccCCccccc--Cch
Q 048827 182 L--GNLRNLLVINLGKNSVSGPIPPTFISF-----LSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGK--FPI 252 (576)
Q Consensus 182 l--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~ 252 (576)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 7888888888888888866 6667666 7888888888888877778888888888888888887654 233
Q ss_pred hh--cCCCCCCeEEeecccCcCC--Ch-hhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCc
Q 048827 253 SI--CGLANLQDLSLSHNQLTGT--IP-EQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNW 327 (576)
Q Consensus 253 ~l--~~l~~L~~L~L~~~~~~~~--~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 327 (576)
.+ ..+++|++|++++|.+++. ++ ..+..+++|++|++++|.+.+..+...+..+++|++|++++|.++ .+|..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~ 271 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKG 271 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhh
Confidence 44 6778888888888887631 22 333466778888888777776554334555677777777777665 44444
Q ss_pred CCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCC
Q 048827 328 IKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLT 367 (576)
Q Consensus 328 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 367 (576)
+. .+|++|++++|.+.+. |.+..+++|++|++++|.++
T Consensus 272 ~~-~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP-AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC-SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred cc-CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 33 4555555555555443 33444455555555555444
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.1e-29 Score=271.24 Aligned_cols=425 Identities=15% Similarity=0.146 Sum_probs=260.8
Q ss_pred cccCCCCCCEEecCCCCCCccC--Cc------------ccccCCCCCCEEEccCCCCCcCCCcccc-CCCCCCEEEccCC
Q 048827 108 ALGNLHFLEVMVISGMKHITGP--IP------------ESLSNLTRLTQLILEDNSLEGSIPPGLG-HLSLLQTLSLGGN 172 (576)
Q Consensus 108 ~l~~l~~L~~L~L~~~~~~~~~--~~------------~~l~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~L~~~ 172 (576)
.+..+++|++|+++++..+... .| .....+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 4567788888888875433211 11 2234678889999988887766555565 5888999999888
Q ss_pred -cCCCC-CCccCCCCCCCcEEEccCCcccccCccccc----CCCCCCEEEcccCC--Cccc-CCccccCCCCCCEEEccC
Q 048827 173 -RLKGP-IPPSLGNLRNLLVINLGKNSVSGPIPPTFI----SFLSLQSLDFSFNL--LSGF-IPDALVRSQNLTYIDLSN 243 (576)
Q Consensus 173 -~~~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~ 243 (576)
.++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. ++.. +...+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 44321 333345788899999988887765544443 56688999888876 2211 122234578889999888
Q ss_pred CcccccCchhhcCCCCCCeEEeeccc-------CcCCChhhhcCCCCCcEE-EccCCcCccccCccccCCCCCCCEEECc
Q 048827 244 NQFSGKFPISICGLANLQDLSLSHNQ-------LTGTIPEQIGGLRSLNSL-KLSEMDSQIRLPIILGRGIPSLLSIDLS 315 (576)
Q Consensus 244 n~~~~~~~~~l~~l~~L~~L~L~~~~-------~~~~~~~~l~~l~~L~~L-~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 315 (576)
|...+.++..+..+++|++|++..+. +. .++..+.++++|+.+ .+..... ..++. ....+++|++|+++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~-~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPA-VYSVCSRLTTLNLS 297 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGG-GHHHHTTCCEEECT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHH-HHHhhCCCCEEEcc
Confidence 83333467777888888888865543 22 234467788888888 3433221 22222 33457788888888
Q ss_pred CCCCCCCCCCCcC-CCCCccEEEccCCcCcc-CCCCCC-CCCCccEEEccC---------CcCCCccchhhh-CCCCCCe
Q 048827 316 YNNLSLGTVPNWI-KDRPLSNVNLAGCKLRG-ALPKFT-RPDSLSSIDLSN---------NLLTDGISSFFT-NMSSLQN 382 (576)
Q Consensus 316 ~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~-~~~~~~-~~~~L~~L~Ls~---------n~l~~~~~~~~~-~l~~L~~ 382 (576)
+|.++...+.... ..++|++|++.+| +.. .++.+. .+++|++|++++ +.+++.....+. .+++|++
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 8876533333222 3347888888777 221 111111 247788887733 445543333333 4778888
Q ss_pred EEccCCcceeeCCC-C-CCCCCCCEEEcc--C----CcCccc-----cchhhhhhccCCcCEEEccCCcCcccCCC-CC-
Q 048827 383 IKLSNNQLKFDVSE-I-RFPDGLASIDLH--S----NQITGS-----LSSIINNRTSSFLEALDVSGNHFSGEIPE-FT- 447 (576)
Q Consensus 383 L~L~~n~~~~~~~~-~-~~~~~L~~L~ls--~----n~~~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~- 447 (576)
|.+..+.++..... + ..+++|++|+++ + +.++.. ++..+...+ +|+.|++++ .+++.... +.
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~--~L~~L~L~~-~l~~~~~~~l~~ 453 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK--DLRRLSLSG-LLTDKVFEYIGT 453 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT--TCCEEECCS-SCCHHHHHHHHH
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC--CccEEeecC-cccHHHHHHHHH
Confidence 87776666532222 2 246778888887 3 333321 112223333 388888866 44443322 33
Q ss_pred CCCCCcEEEccCCcCCccChhhh-hcCccCCeeeCccCcCCccCcc-cccCCCCCCEEeCCCCcCcccccccc-cCCCCC
Q 048827 448 EGLSLKVLNIGSNKITGHIPSSI-SNLIELEMLDIQRNQIAGTIPT-SLGLLSKLQWLDVSVNSLTGKIPTSL-LGIRGL 524 (576)
Q Consensus 448 ~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~~~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L 524 (576)
.+++|+.|++++|.+++..+..+ ..+++|++|+|++|++++.... ....+++|++|++++|+++......+ ..++.|
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 26778888888888876555554 6688888888888888654443 34457788888888888865444444 456777
Q ss_pred CEEEccCCcceecCC
Q 048827 525 RHANFRANRLCGEIP 539 (576)
Q Consensus 525 ~~L~l~~n~l~g~iP 539 (576)
+...+..+......|
T Consensus 534 ~i~~~~~~~~~~~~~ 548 (594)
T 2p1m_B 534 NVEVIDERGAPDSRP 548 (594)
T ss_dssp EEEEECSSSCGGGSC
T ss_pred EEEEecCCCcccccc
Confidence 777666665443333
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.9e-26 Score=221.66 Aligned_cols=214 Identities=23% Similarity=0.235 Sum_probs=177.5
Q ss_pred eecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCc-CCCCCCcc
Q 048827 103 GTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNR-LKGPIPPS 181 (576)
Q Consensus 103 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~-~~~~~p~~ 181 (576)
..+|..+ .++|++|++++ +.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|. +....|..
T Consensus 24 ~~ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp SSCCTTC--CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred ccCCcCC--CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 3455543 46889999998 66776666778889999999999999887778888899999999999997 77555778
Q ss_pred CCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCC
Q 048827 182 LGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQ 261 (576)
Q Consensus 182 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 261 (576)
+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 88899999999999998887788888899999999999998877777788899999999999988866666788889999
Q ss_pred eEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 262 DLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 262 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
+|++++|.+.+..|..+..+++|++|++++|.+....+. .+..+++|++|++++|.+.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-HcccCcccCEEeccCCCcc
Confidence 999999998877788888888999999998887764433 5778888888888888775
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=8.5e-25 Score=227.11 Aligned_cols=235 Identities=24% Similarity=0.242 Sum_probs=166.4
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCC
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG 183 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 183 (576)
.+|..+. +++++|+|++ +.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|.
T Consensus 57 ~iP~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCCC--TTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCCC--CCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 4555443 5677788877 666666667777788888888888877766666777788888888888877755555677
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCC-CcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCe
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNL-LSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQD 262 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 262 (576)
.+++|++|++++|.+....+..+..+++|++|++++|. +....+..|..+++|++|++++|.++ .+| .+..+++|++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDE 211 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCE
Confidence 77888888888887776666677778888888887743 33333346777788888888888777 444 3667778888
Q ss_pred EEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCc
Q 048827 263 LSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCK 342 (576)
Q Consensus 263 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 342 (576)
|++++|.+++..+..|..+++|++|++++|.+....+. .+..+++|++|++++|.++......+....+|+.|++++|.
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChh-hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 88888877766677777788888888888777665554 66777788888888887772222223334578888888776
Q ss_pred Cc
Q 048827 343 LR 344 (576)
Q Consensus 343 ~~ 344 (576)
+.
T Consensus 291 ~~ 292 (440)
T 3zyj_A 291 WN 292 (440)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.1e-23 Score=225.49 Aligned_cols=262 Identities=25% Similarity=0.311 Sum_probs=151.8
Q ss_pred CCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEcc
Q 048827 211 SLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLS 290 (576)
Q Consensus 211 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 290 (576)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5778888888777 5565553 67888888888777 4454 4677778888777776 3443 45677777777
Q ss_pred CCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCcc
Q 048827 291 EMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGI 370 (576)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 370 (576)
+|.+..... .+++|++|++++|.++ .+|.. ..+|++|++++|.+.+... .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~~l~~-----~l~~L~~L~L~~N~l~--~lp~~--l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHLPA-----LPSGLCKLWIFGNQLT--SLPVL--PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCCCC-----CCTTCCEEECCSSCCS--CCCCC--CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCCCC-----CCCCcCEEECCCCCCC--cCCCC--CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-C
Confidence 766554211 4456666666666654 23332 1345555555554443211 12344444444444444 2
Q ss_pred chhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCCC
Q 048827 371 SSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGL 450 (576)
Q Consensus 371 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 450 (576)
| ..+++|+.|++++|.+++..+ .. ++|+.|++++|.+.. +|. .++
T Consensus 177 ~--------------------------~~~~~L~~L~Ls~N~l~~l~~-~~-----~~L~~L~L~~N~l~~-l~~--~~~ 221 (622)
T 3g06_A 177 P--------------------------MLPSGLQELSVSDNQLASLPT-LP-----SELYKLWAYNNRLTS-LPA--LPS 221 (622)
T ss_dssp C--------------------------CCCTTCCEEECCSSCCSCCCC-CC-----TTCCEEECCSSCCSS-CCC--CCT
T ss_pred c--------------------------ccCCCCcEEECCCCCCCCCCC-cc-----chhhEEECcCCcccc-cCC--CCC
Confidence 2 233445555555555443211 11 125666666665552 222 135
Q ss_pred CCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEcc
Q 048827 451 SLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFR 530 (576)
Q Consensus 451 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 530 (576)
+|+.|++++|++++ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|+++ .+|..+.++++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 66667777666664 34 34566777777777666 4554 4566777777777766 566667777777777777
Q ss_pred CCcceecCCC
Q 048827 531 ANRLCGEIPQ 540 (576)
Q Consensus 531 ~n~l~g~iP~ 540 (576)
+|++++.+|.
T Consensus 293 ~N~l~~~~~~ 302 (622)
T 3g06_A 293 GNPLSERTLQ 302 (622)
T ss_dssp SCCCCHHHHH
T ss_pred CCCCCCcCHH
Confidence 7777666655
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-26 Score=228.64 Aligned_cols=267 Identities=20% Similarity=0.180 Sum_probs=170.3
Q ss_pred EEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCc
Q 048827 214 SLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMD 293 (576)
Q Consensus 214 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 293 (576)
..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34444444443333444455566666776666665555666666666666666666654332 5556666666666655
Q ss_pred CccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchh
Q 048827 294 SQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSF 373 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 373 (576)
+.+.. ..++|++|++++|.++ +..+. .+++|++|++++|.+++..+..
T Consensus 92 l~~l~------~~~~L~~L~l~~n~l~------------------------~~~~~--~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 92 VQELL------VGPSIETLHAANNNIS------------------------RVSCS--RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp EEEEE------ECTTCCEEECCSSCCS------------------------EEEEC--CCSSCEEEECCSSCCCSGGGBC
T ss_pred ccccc------CCCCcCEEECCCCccC------------------------CcCcc--ccCCCCEEECCCCCCCCccchh
Confidence 44221 1244444444444333 22111 1345666666666666655555
Q ss_pred hhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhh-hhccCCcCEEEccCCcCcccCCCCCCCCCC
Q 048827 374 FTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIIN-NRTSSFLEALDVSGNHFSGEIPEFTEGLSL 452 (576)
Q Consensus 374 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L 452 (576)
+..+++|++|++++|.+.+ ..+..+. ... .|++|++++|.+.+. +....+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~~l~--~L~~L~L~~N~l~~~-~~~~~l~~L 193 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDT-----------------------VNFAELAASSD--TLEHLNLQYNFIYDV-KGQVVFAKL 193 (317)
T ss_dssp TGGGSSEEEEECTTSCCCE-----------------------EEGGGGGGGTT--TCCEEECTTSCCCEE-ECCCCCTTC
T ss_pred hhccCCCCEEECCCCCCCc-----------------------ccHHHHhhccC--cCCEEECCCCcCccc-ccccccccC
Confidence 5555555555555555543 3332221 112 266666666666543 344457899
Q ss_pred cEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCc-ccccccccCCCCCCEEEccC
Q 048827 453 KVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLT-GKIPTSLLGIRGLRHANFRA 531 (576)
Q Consensus 453 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~ 531 (576)
++|++++|++++. |..+..+++|++|++++|.+. .+|..+..+++|++|++++|++. +.+|..+..++.|+.+++++
T Consensus 194 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 194 KTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 9999999999854 445889999999999999999 67888999999999999999999 78888999999999999995
Q ss_pred C-cceecCCCCC
Q 048827 532 N-RLCGEIPQGR 542 (576)
Q Consensus 532 n-~l~g~iP~~~ 542 (576)
| .+.|..|...
T Consensus 272 ~~~l~~~~~~~~ 283 (317)
T 3o53_A 272 VKKLTGQNEEEC 283 (317)
T ss_dssp HHHHHSSSSCCC
T ss_pred chhccCCchhcc
Confidence 5 5777777653
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.7e-24 Score=207.97 Aligned_cols=217 Identities=22% Similarity=0.281 Sum_probs=148.2
Q ss_pred CCCCCCCcCcEEcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEc
Q 048827 66 KDCCGGDWEGVVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLIL 145 (576)
Q Consensus 66 ~~~c~~~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l 145 (576)
.++| .|.|+.|.- ...++.+++++.. ...+|..+. +++++|++++ +.+++..+..|.++++|++|++
T Consensus 2 ~~~C--~~~~~~C~c-~~~~~~l~~~~~~-------l~~ip~~~~--~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALC--KKDGGVCSC-NNNKNSVDCSSKK-------LTAIPSNIP--ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYL 68 (270)
T ss_dssp CCCB--GGGTCSBEE-ETTTTEEECTTSC-------CSSCCSCCC--TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEEC
T ss_pred CccC--CCCCCCCEe-CCCCCEEEccCCC-------CCccCCCCC--CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEEC
Confidence 4788 999988863 2345677777765 234555443 5677777777 5566555556777777777777
Q ss_pred cCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCccc
Q 048827 146 EDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGF 225 (576)
Q Consensus 146 ~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 225 (576)
++|.++...+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 77777744344456777777777777777755555667777777777777777766666677777777777777777765
Q ss_pred CCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCc
Q 048827 226 IPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQ 295 (576)
Q Consensus 226 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 295 (576)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5555677777777777777777555556667777777777777776544445666666666666666543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.8e-26 Score=224.62 Aligned_cols=260 Identities=21% Similarity=0.221 Sum_probs=152.0
Q ss_pred CCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEcc
Q 048827 115 LEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLG 194 (576)
Q Consensus 115 L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 194 (576)
++..+++. +.+...+...+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~-~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCT-TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccc-cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 33444444 33332333344455666666666666665545566666666666666666653332 5666666666666
Q ss_pred CCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCC
Q 048827 195 KNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTI 274 (576)
Q Consensus 195 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 274 (576)
+|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.++ +..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~------------------------~~~ 136 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKIT------------------------MLR 136 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCC------------------------SGG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCC------------------------Ccc
Confidence 66655321 2255555555555555332221 334444444444444 333
Q ss_pred hhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCC
Q 048827 275 PEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPD 354 (576)
Q Consensus 275 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 354 (576)
+..+..+++|++|++++|.+....+......+++|++|++++|.++ .+ +....++
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~--~~-----------------------~~~~~l~ 191 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DV-----------------------KGQVVFA 191 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC--EE-----------------------ECCCCCT
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc--cc-----------------------ccccccc
Confidence 3344444455555555544444333322234555555555555554 11 1222347
Q ss_pred CccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCc-cccchhhhhhccCCcCEEE
Q 048827 355 SLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQIT-GSLSSIINNRTSSFLEALD 433 (576)
Q Consensus 355 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~~~~~~L~~L~ 433 (576)
+|++|++++|.+++. +..+..+++|+.|++++|.+......+..+++|+.|++++|++. +.++..+..... |+.++
T Consensus 192 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~--L~~l~ 268 (317)
T 3o53_A 192 KLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR--VQTVA 268 (317)
T ss_dssp TCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH--HHHHH
T ss_pred cCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc--ceEEE
Confidence 788888888888774 44488888999999999998876666888899999999999998 566666655544 77777
Q ss_pred ccCC
Q 048827 434 VSGN 437 (576)
Q Consensus 434 l~~n 437 (576)
+.++
T Consensus 269 l~~~ 272 (317)
T 3o53_A 269 KQTV 272 (317)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7744
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.7e-26 Score=228.45 Aligned_cols=266 Identities=23% Similarity=0.248 Sum_probs=208.8
Q ss_pred CCCCC-CCCCCCCCcCcEEcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCC-ccCCccccc--
Q 048827 60 LASWM-GKDCCGGDWEGVVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHI-TGPIPESLS-- 135 (576)
Q Consensus 60 ~~~w~-~~~~c~~~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~l~-- 135 (576)
...|. ...|+ .+..+.......+++.++++++. + .+|..+... |++|++++ +.+ ...+|..+.
T Consensus 21 ~~~~~~~~~c~--~~~~~~~~~~~~~L~~l~l~~n~------l--~~p~~~~~~--L~~L~L~~-n~l~~~~~~~~~~~~ 87 (312)
T 1wwl_A 21 KPDWSSAFNCL--GAADVELYGGGRSLEYLLKRVDT------E--ADLGQFTDI--IKSLSLKR-LTVRAARIPSRILFG 87 (312)
T ss_dssp SCCGGGGGGSS--SCSEEEEEEEEEECTTHHHHCCT------T--CCCHHHHHH--HHHCCCCE-EEEEEEECBHHHHHH
T ss_pred ccchHHHhhhh--ccccEEEEccCCCceeEeecccc------c--ccHHHHHHH--Hhhccccc-ccccCCCcCHHHHHH
Confidence 45676 33454 44443322123445556666655 4 667766554 88889988 555 456777665
Q ss_pred -----CCCCCCEEEccCCCCCcCCCccc--cCCCCCCEEEccCCcCCCCCCccCCCC-----CCCcEEEccCCcccccCc
Q 048827 136 -----NLTRLTQLILEDNSLEGSIPPGL--GHLSLLQTLSLGGNRLKGPIPPSLGNL-----RNLLVINLGKNSVSGPIP 203 (576)
Q Consensus 136 -----~l~~L~~L~l~~~~~~~~~p~~l--~~l~~L~~L~L~~~~~~~~~p~~l~~l-----~~L~~L~l~~n~~~~~~~ 203 (576)
++++|++|++++|.+++.+|..+ +.+++|++|++++|.+++. |..++.+ ++|++|++++|.+.+..+
T Consensus 88 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp HHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred HHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 79999999999999998899886 8999999999999999966 8777776 999999999999998888
Q ss_pred ccccCCCCCCEEEcccCCCccc--CCccc--cCCCCCCEEEccCCcccc--cCc-hhhcCCCCCCeEEeecccCcCCCh-
Q 048827 204 PTFISFLSLQSLDFSFNLLSGF--IPDAL--VRSQNLTYIDLSNNQFSG--KFP-ISICGLANLQDLSLSHNQLTGTIP- 275 (576)
Q Consensus 204 ~~l~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~L~~~~~~~~~~- 275 (576)
..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+..|
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 9999999999999999998765 33444 889999999999999983 222 344688999999999999987664
Q ss_pred hhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCcc
Q 048827 276 EQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRG 345 (576)
Q Consensus 276 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 345 (576)
..+..+++|++|++++|.+. .+|... . ++|++|++++|.++ .+|.+...++|++|++++|.+.+
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~-~--~~L~~L~Ls~N~l~--~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLK-QVPKGL-P--AKLSVLDLSYNRLD--RNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCS-SCCSSC-C--SEEEEEECCSSCCC--SCCCTTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcCCCCEEECCCCccC-hhhhhc-c--CCceEEECCCCCCC--CChhHhhCCCCCEEeccCCCCCC
Confidence 45667899999999999988 555522 2 89999999999998 34776666799999999998864
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.4e-23 Score=220.01 Aligned_cols=287 Identities=24% Similarity=0.308 Sum_probs=145.7
Q ss_pred CCCC-CCCCCCCCcCcEEc------CCCCCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCccc
Q 048827 61 ASWM-GKDCCGGDWEGVVC------NPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPES 133 (576)
Q Consensus 61 ~~w~-~~~~c~~~w~~v~c------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 133 (576)
..|. +.+|| .|+|..+ ......++.++++++. + ..+|..+. ++|++|++++ +.++ .+|.
T Consensus 13 ~~W~~~~~~~--~~~~r~~~~~~~~~c~~~~l~~L~ls~n~------L-~~lp~~l~--~~L~~L~L~~-N~l~-~lp~- 78 (622)
T 3g06_A 13 SAWRRAAPAE--ESRGRAAVVQKMRACLNNGNAVLNVGESG------L-TTLPDCLP--AHITTLVIPD-NNLT-SLPA- 78 (622)
T ss_dssp HHHHHTCCGG--GHHHHHHHHHHHHHHHHHCCCEEECCSSC------C-SCCCSCCC--TTCSEEEECS-CCCS-CCCC-
T ss_pred HHHHhcCCcc--hhccccccCcccccccCCCCcEEEecCCC------c-CccChhhC--CCCcEEEecC-CCCC-CCCC-
Confidence 3555 56677 8866432 1112245566666554 2 24444443 4555555555 3333 2333
Q ss_pred ccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCC
Q 048827 134 LSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQ 213 (576)
Q Consensus 134 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 213 (576)
.+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|.. +++|+
T Consensus 79 --~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~ 144 (622)
T 3g06_A 79 --LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQ 144 (622)
T ss_dssp --CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred --cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCC
Confidence 3455555555555555 3443 4455555555555555 2332 34455555555555542 2321 24555
Q ss_pred EEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCc
Q 048827 214 SLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMD 293 (576)
Q Consensus 214 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 293 (576)
+|++++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.
T Consensus 145 ~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~----------------- 198 (622)
T 3g06_A 145 ELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT----------------- 198 (622)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-----------------
T ss_pred EEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC-----------------
Confidence 55555555442 222 12345555555555442 33 223444444444444442 221
Q ss_pred CccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchh
Q 048827 294 SQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSF 373 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 373 (576)
.+++|+.|++++|.++ .+|.. ..+|+.|++++|.+.+ +| ..+++|++|++++|.++. +|.
T Consensus 199 -----------~~~~L~~L~L~~N~l~--~l~~~--~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~L~~-lp~- 258 (622)
T 3g06_A 199 -----------LPSELYKLWAYNNRLT--SLPAL--PSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNRLTS-LPM- 258 (622)
T ss_dssp -----------CCTTCCEEECCSSCCS--SCCCC--CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCC-
T ss_pred -----------ccchhhEEECcCCccc--ccCCC--CCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCCCCc-CCc-
Confidence 1244555555555544 23321 1355556666555554 22 233667777777776665 332
Q ss_pred hhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhh
Q 048827 374 FTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINN 423 (576)
Q Consensus 374 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 423 (576)
.+++|+.|++++|.+......+..+++|+.|++++|++.+..+..+..
T Consensus 259 --~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp --CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred --ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 456677777777776633333666777777777777777766665554
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.4e-27 Score=258.27 Aligned_cols=411 Identities=13% Similarity=0.108 Sum_probs=283.6
Q ss_pred CEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCc---CCCcc------------ccCCCCCCEEEccCCcCCCCCCc
Q 048827 116 EVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEG---SIPPG------------LGHLSLLQTLSLGGNRLKGPIPP 180 (576)
Q Consensus 116 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~p~~------------l~~l~~L~~L~L~~~~~~~~~p~ 180 (576)
+.+++..+.... ....+.++++|++|+++++.... ..|.. ...+++|++|++++|.+++..+.
T Consensus 46 ~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 123 (594)
T 2p1m_B 46 RKVFIGNCYAVS--PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123 (594)
T ss_dssp CEEEESSTTSSC--HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred eEEeeccccccC--HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence 456666533221 22456778999999999976321 12211 24688999999999998866666
Q ss_pred cCC-CCCCCcEEEccCC-ccccc-CcccccCCCCCCEEEcccCCCcccCCcccc----CCCCCCEEEccCCc--cccc-C
Q 048827 181 SLG-NLRNLLVINLGKN-SVSGP-IPPTFISFLSLQSLDFSFNLLSGFIPDALV----RSQNLTYIDLSNNQ--FSGK-F 250 (576)
Q Consensus 181 ~l~-~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l~~L~~L~l~~n~--~~~~-~ 250 (576)
.+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. +... +
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence 665 6899999999999 45432 445556899999999999988766555443 67799999999986 2211 1
Q ss_pred chhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCc------cccCccccCCCCCCCEE-ECcCCCCCCCC
Q 048827 251 PISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQ------IRLPIILGRGIPSLLSI-DLSYNNLSLGT 323 (576)
Q Consensus 251 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~------~~~~~~~~~~~~~L~~L-~l~~~~l~~~~ 323 (576)
...+..+++|++|++.+|...+.++..+..+++|++|++..+... ..++. .+.++++|+.+ .+.... ...
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~--~~~ 280 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAV--PAY 280 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCC--GGG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccc--hhh
Confidence 222355799999999998433347778889999999997765320 11222 45788999999 444322 134
Q ss_pred CCCcC-CCCCccEEEccCCcCccCCCC--CCCCCCccEEEccCCcCCCc-cchhhhCCCCCCeEEccCC---------cc
Q 048827 324 VPNWI-KDRPLSNVNLAGCKLRGALPK--FTRPDSLSSIDLSNNLLTDG-ISSFFTNMSSLQNIKLSNN---------QL 390 (576)
Q Consensus 324 ~~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n---------~~ 390 (576)
++... ...+|++|++++|.+.+.... ...+++|++|++++| +++. ++.....+++|++|++.++ .+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 44433 234899999999986543211 335689999999988 4432 2223345899999999542 33
Q ss_pred eeeCC-C-CCCCCCCCEEEccCCcCccccchhhhh-hccCCcCEEEcc--C----CcCcccCC-----C-CCCCCCCcEE
Q 048827 391 KFDVS-E-IRFPDGLASIDLHSNQITGSLSSIINN-RTSSFLEALDVS--G----NHFSGEIP-----E-FTEGLSLKVL 455 (576)
Q Consensus 391 ~~~~~-~-~~~~~~L~~L~ls~n~~~~~~~~~~~~-~~~~~L~~L~l~--~----n~~~~~~~-----~-~~~~~~L~~L 455 (576)
+.... . ...+++|++|.++.+.+++.....+.. . ++|+.|+++ + +.+++... . +..+++|+.|
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR--PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC--TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC--CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence 21110 1 124789999998888888765555442 3 349999999 3 34442111 1 4567899999
Q ss_pred EccCCcCCccChhhhhc-CccCCeeeCccCcCCccCcccc-cCCCCCCEEeCCCCcCcccccc-cccCCCCCCEEEccCC
Q 048827 456 NIGSNKITGHIPSSISN-LIELEMLDIQRNQIAGTIPTSL-GLLSKLQWLDVSVNSLTGKIPT-SLLGIRGLRHANFRAN 532 (576)
Q Consensus 456 ~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n 532 (576)
++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|++++|++++..+. ....+++|++|++++|
T Consensus 438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence 9987 777666666665 8999999999999987665555 6689999999999999765443 4456899999999999
Q ss_pred cce
Q 048827 533 RLC 535 (576)
Q Consensus 533 ~l~ 535 (576)
+++
T Consensus 517 ~~~ 519 (594)
T 2p1m_B 517 SVS 519 (594)
T ss_dssp CCB
T ss_pred CCC
Confidence 985
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=7e-24 Score=222.32 Aligned_cols=235 Identities=23% Similarity=0.264 Sum_probs=140.2
Q ss_pred CCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcc
Q 048827 139 RLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFS 218 (576)
Q Consensus 139 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 218 (576)
+|++|++++|.+++..|..|+.+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 67777777777765555667777777777777777664433 666667777777766665322 12556666666
Q ss_pred cCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCcccc
Q 048827 219 FNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRL 298 (576)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 298 (576)
+|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~------------------- 165 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------------------- 165 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-------------------
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-------------------
Confidence 6665544332 234455555555555544444444455555555555554443333332
Q ss_pred CccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCC
Q 048827 299 PIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMS 378 (576)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 378 (576)
..+++|++|++++|.++ .+ +....+++|++|++++|.+++..+ .+..++
T Consensus 166 -----~~l~~L~~L~Ls~N~l~--~~-----------------------~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~ 214 (487)
T 3oja_A 166 -----ASSDTLEHLNLQYNFIY--DV-----------------------KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (487)
T ss_dssp -----GGTTTCCEEECTTSCCC--EE-----------------------ECCCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred -----hhCCcccEEecCCCccc--cc-----------------------cccccCCCCCEEECCCCCCCCCCH-hHcCCC
Confidence 23445555555555443 11 112234677777777777776444 477788
Q ss_pred CCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCc-cccchhhhhhccCCcCEEEcc
Q 048827 379 SLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQIT-GSLSSIINNRTSSFLEALDVS 435 (576)
Q Consensus 379 ~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~~~~~~L~~L~l~ 435 (576)
+|+.|++++|.+.+..+.+..+++|+.|++++|++. +.+|..+..... ++.+++.
T Consensus 215 ~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~--L~~l~~~ 270 (487)
T 3oja_A 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR--VQTVAKQ 270 (487)
T ss_dssp TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH--HHHHHHH
T ss_pred CccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC--CcEEecc
Confidence 888888888888876666778888888888888887 445555444333 5555554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.6e-24 Score=225.57 Aligned_cols=238 Identities=18% Similarity=0.170 Sum_probs=190.0
Q ss_pred cCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCc
Q 048827 110 GNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLL 189 (576)
Q Consensus 110 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 189 (576)
..+++|++|+|++ +.+++..|..|+.+++|++|++++|.+++..| ++.+++|++|++++|.+++ +| ..++|+
T Consensus 31 ~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIE 102 (487)
T ss_dssp TTGGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCC
T ss_pred ccCCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcC
Confidence 3445999999999 77888778899999999999999999986554 9999999999999999984 33 238999
Q ss_pred EEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhc-CCCCCCeEEeecc
Q 048827 190 VINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISIC-GLANLQDLSLSHN 268 (576)
Q Consensus 190 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~~ 268 (576)
+|++++|.+++..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999876554 468899999999999998898999999999999999999988888886 7999999999999
Q ss_pred cCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCC
Q 048827 269 QLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALP 348 (576)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 348 (576)
.+++. + ....+++|++|++++|.+.+..+ .+..+++|+.|++++|.++ +.++
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~------------------------~lp~ 231 (487)
T 3oja_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLV------------------------LIEK 231 (487)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCC------------------------EECT
T ss_pred ccccc-c-ccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCc------------------------ccch
Confidence 99854 2 23357778888887777665433 2445555666666555554 3333
Q ss_pred CCCCCCCccEEEccCCcCC-CccchhhhCCCCCCeEEcc
Q 048827 349 KFTRPDSLSSIDLSNNLLT-DGISSFFTNMSSLQNIKLS 386 (576)
Q Consensus 349 ~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 386 (576)
.+..+++|+.|++++|.+. +.+|.++..++.|+.++++
T Consensus 232 ~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 3445578888888888887 5677778888888877775
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=7.6e-23 Score=198.59 Aligned_cols=209 Identities=22% Similarity=0.204 Sum_probs=130.5
Q ss_pred CCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEc
Q 048827 138 TRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDF 217 (576)
Q Consensus 138 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 217 (576)
++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777777555556777777777777777777555556777777777777777777666667777777777777
Q ss_pred ccCCCcccCCccccCCCCCCEEEccCCccccc-CchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCcc
Q 048827 218 SFNLLSGFIPDALVRSQNLTYIDLSNNQFSGK-FPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQI 296 (576)
Q Consensus 218 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 296 (576)
++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------- 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence 77777765555666777777777777776642 466666677777777777766654444444333333
Q ss_pred ccCccccCCCCCCC-EEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhh
Q 048827 297 RLPIILGRGIPSLL-SIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFT 375 (576)
Q Consensus 297 ~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 375 (576)
.+. +|++++|.++ +..+......+|++|++++|.+++..+..|.
T Consensus 177 -----------~l~l~L~ls~n~l~------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 177 -----------LLNLSLDLSLNPMN------------------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp -----------TCCEEEECCSSCCC------------------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred -----------ccceeeecCCCccc------------------------ccCccccCCCcccEEECCCCceeecCHhHhc
Confidence 111 3344444333 2222222223566666666666655444555
Q ss_pred CCCCCCeEEccCCccee
Q 048827 376 NMSSLQNIKLSNNQLKF 392 (576)
Q Consensus 376 ~l~~L~~L~L~~n~~~~ 392 (576)
.+++|+.|++++|++.+
T Consensus 222 ~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCCSCCEEECCSSCBCC
T ss_pred ccccccEEEccCCcccc
Confidence 66666666666666553
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2e-22 Score=195.60 Aligned_cols=212 Identities=20% Similarity=0.184 Sum_probs=175.8
Q ss_pred ecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCC
Q 048827 104 TLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG 183 (576)
Q Consensus 104 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 183 (576)
.+|..+. ++|++|++++ +.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|.
T Consensus 21 ~ip~~l~--~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCCSSSC--TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCC--CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 4555443 5799999998 677766667899999999999999999876677899999999999999999977778899
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCccc-CCccccCCCCCCEEEccCCcccccCchhhcCCCCCC-
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGF-IPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQ- 261 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~- 261 (576)
++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 999999999999999877777899999999999999999864 588999999999999999999977777777777776
Q ss_pred ---eEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 262 ---DLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 262 ---~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
+|++++|.+.+..+..+ ...+|++|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 178 l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBC
T ss_pred cceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCH-hHhcccccccEEEccCCccc
Confidence 89999999885544444 44589999999888775443 35677888888888888776
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.5e-21 Score=188.64 Aligned_cols=202 Identities=22% Similarity=0.234 Sum_probs=161.5
Q ss_pred CCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEc
Q 048827 114 FLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINL 193 (576)
Q Consensus 114 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l 193 (576)
..+++++++ +.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 17 ~~~~l~~~~-~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSS-KKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTT-SCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccC-CCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 467888887 5565 4666553 67899999999888665667888999999999999888555555688899999999
Q ss_pred cCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCC
Q 048827 194 GKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGT 273 (576)
Q Consensus 194 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 273 (576)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99988877677788888999999999988877777888889999999999988866666688888999999998888876
Q ss_pred ChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 274 IPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 274 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
.+..|..+++|++|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCee
Confidence 66678888888888888887765433 35667788888888888765
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.7e-22 Score=193.13 Aligned_cols=180 Identities=26% Similarity=0.282 Sum_probs=101.5
Q ss_pred cCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCc
Q 048827 110 GNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLL 189 (576)
Q Consensus 110 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 189 (576)
..+++|++|++++ +.+.. ...+..+++|++|++++|.+.+ + ..++++++|++|++++|.+++..+..+.++++|+
T Consensus 38 ~~l~~L~~L~l~~-~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANN-SDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTT-SCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCC-CCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3455566666655 33331 1235556666666666666553 2 2455666666666666666544444455666666
Q ss_pred EEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeeccc
Q 048827 190 VINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQ 269 (576)
Q Consensus 190 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~ 269 (576)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666666655555555566666666666666655545555556666666666666654444445555666666666666
Q ss_pred CcCCChhhhcCCCCCcEEEccCCcC
Q 048827 270 LTGTIPEQIGGLRSLNSLKLSEMDS 294 (576)
Q Consensus 270 ~~~~~~~~l~~l~~L~~L~L~~~~~ 294 (576)
+.+..+..+..+++|++|++++|.+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCHHHHhCCcCCCEEEccCCCc
Confidence 6554444455555555555555543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.7e-22 Score=191.83 Aligned_cols=184 Identities=27% Similarity=0.302 Sum_probs=143.6
Q ss_pred ccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCC
Q 048827 132 ESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLS 211 (576)
Q Consensus 132 ~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 211 (576)
..+..+++|+.|++++|.+. .++ .++.+++|++|++++|.+++ + ..+.++++|++|++++|.+++..+..+..+++
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 34556888999999998887 343 58888999999999998874 3 47888899999999999888777777888889
Q ss_pred CCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccC
Q 048827 212 LQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSE 291 (576)
Q Consensus 212 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 291 (576)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 99999999888877777788888888888888888866666678888888888888888866666677778888888887
Q ss_pred CcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 292 MDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
|.+.+..+. .+..+++|++|++++|.+.
T Consensus 191 N~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 191 NQLKSVPDG-VFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CcCCccCHH-HHhCCcCCCEEEccCCCcc
Confidence 776654443 4555666666666666543
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.4e-21 Score=186.78 Aligned_cols=192 Identities=23% Similarity=0.267 Sum_probs=146.4
Q ss_pred CCCCCCcCcEEcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEcc
Q 048827 67 DCCGGDWEGVVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILE 146 (576)
Q Consensus 67 ~~c~~~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~ 146 (576)
+|+ .|.|..|.. ..+.+++++.. ...+|..+. +++++|++++ +.+.+..+..|.++++|++|+++
T Consensus 3 ~Cp--~~~gC~C~~---~~~~l~~~~~~-------l~~~p~~~~--~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 3 TCE--TVTGCTCNE---GKKEVDCQGKS-------LDSVPSGIP--ADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLD 67 (251)
T ss_dssp -CH--HHHSSEEEG---GGTEEECTTCC-------CSSCCSCCC--TTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCC--CCCceEcCC---CCeEEecCCCC-------ccccCCCCC--CCCCEEEccC-CCcCccCHhHhcCcccCCEEECC
Confidence 577 888999952 23457777765 345666554 5788888888 66776667778888888888888
Q ss_pred CCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccC
Q 048827 147 DNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFI 226 (576)
Q Consensus 147 ~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 226 (576)
+|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 88888766667888888888888888888666667788888888888888888666666778888888888888888666
Q ss_pred CccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCC
Q 048827 227 PDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGT 273 (576)
Q Consensus 227 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 273 (576)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66777888888888888888866666777788888888888877654
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.5e-24 Score=212.43 Aligned_cols=233 Identities=23% Similarity=0.265 Sum_probs=171.9
Q ss_pred CcCcEEcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCC--CCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCC
Q 048827 72 DWEGVVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNL--HFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNS 149 (576)
Q Consensus 72 ~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 149 (576)
.|.++.|+ ...++.++++++. +. +..+..+ +++++|++++ +.+.+..+. +..+++|++|++++|.
T Consensus 38 ~W~~~~~~--~~~~~~l~l~~~~------~~---~~~~~~~~~~~l~~L~l~~-n~l~~~~~~-~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 38 RWYRLASD--ESLWQTLDLTGKN------LH---PDVTGRLLSQGVIAFRCPR-SFMDQPLAE-HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp HHHHHHTC--STTSSEEECTTCB------CC---HHHHHHHHHTTCSEEECTT-CEECSCCCS-CCCCBCCCEEECTTCE
T ss_pred HHHHHhcC--chhheeecccccc------CC---HHHHHhhhhccceEEEcCC-ccccccchh-hccCCCCCEEEccCCC
Confidence 68887775 3456788888765 22 4455666 7888898888 666655554 5578889999998888
Q ss_pred CCcC-CCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCC-cccc-cCcccccCCCCCCEEEcccC-CCccc
Q 048827 150 LEGS-IPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKN-SVSG-PIPPTFISFLSLQSLDFSFN-LLSGF 225 (576)
Q Consensus 150 ~~~~-~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~ 225 (576)
+.+. ++..+.++++|++|++++|.+++..+..++++++|++|++++| .+++ .++..+..+++|++|++++| .+++.
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 7754 6777888888999999888887777777888888888888888 5664 25666788888888888888 77754
Q ss_pred -CCccccCCC-CCCEEEccCC--ccc-ccCchhhcCCCCCCeEEeeccc-CcCCChhhhcCCCCCcEEEccCCcCccccC
Q 048827 226 -IPDALVRSQ-NLTYIDLSNN--QFS-GKFPISICGLANLQDLSLSHNQ-LTGTIPEQIGGLRSLNSLKLSEMDSQIRLP 299 (576)
Q Consensus 226 -~~~~l~~l~-~L~~L~l~~n--~~~-~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 299 (576)
++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.......
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 566677888 8888888888 444 3456667788888888888888 666667778888888888888885221111
Q ss_pred ccccCCCCCCCEEECcCC
Q 048827 300 IILGRGIPSLLSIDLSYN 317 (576)
Q Consensus 300 ~~~~~~~~~L~~L~l~~~ 317 (576)
...+..+++|++|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 113556777777777777
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=6.6e-21 Score=185.82 Aligned_cols=202 Identities=25% Similarity=0.220 Sum_probs=102.5
Q ss_pred ccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCC
Q 048827 109 LGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNL 188 (576)
Q Consensus 109 l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 188 (576)
+.++++++++++++ +.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++ ++. .+.+++|
T Consensus 6 ~~~l~~l~~l~~~~-~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTT-SCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTC
T ss_pred ccccCCccEEECCC-CCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcC
Confidence 34455555555555 3333 3343332 455555555555554444555555555555555555552 222 2455555
Q ss_pred cEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecc
Q 048827 189 LVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN 268 (576)
Q Consensus 189 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~ 268 (576)
++|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 55555555554 44445555555555555555555444455555555555555555555444444455555555555555
Q ss_pred cCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCC
Q 048827 269 QLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNL 319 (576)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 319 (576)
++++..+..+..+++|++|++++|.+. .+|. .+...+.|+.+++++|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~-~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccCh-hhcccccCCeEEeCCCCc
Confidence 555333333445555555555555444 2222 222334455555555444
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.8e-20 Score=182.77 Aligned_cols=177 Identities=23% Similarity=0.206 Sum_probs=136.2
Q ss_pred CCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEE
Q 048827 354 DSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALD 433 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~ 433 (576)
++++.|++++|.+++..+..|..+++|++|++++|.+.+..+ ...+++|++|++++|.+.. +|..+..... |++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~--L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPA--LTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSS-CCCCTTTCTT--CCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCCc-CchhhccCCC--CCEEE
Confidence 577788888888877777778888888888888888775444 3677788888888888773 4444433333 88888
Q ss_pred ccCCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcc
Q 048827 434 VSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTG 512 (576)
Q Consensus 434 l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~ 512 (576)
+++|.+.+..+. +..+++|++|++++|++++..+..|..+++|+.|+|++|++.+..+..+..+++|++|++++|+++
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 888888866655 778888888888888888776777788888888888888888555556677888888888888888
Q ss_pred cccccccCCCCCCEEEccCCcce
Q 048827 513 KIPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 513 ~~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
.+|..+...++|+.+++++|++.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCeEEeCCCCcc
Confidence 67777777888888888888875
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=186.44 Aligned_cols=199 Identities=21% Similarity=0.225 Sum_probs=93.3
Q ss_pred CCCCEEEccCCcCCCCCCccC--CCCCCCcEEEccCCcccccCc----ccccCCCCCCEEEcccCCCcccCCccccCCCC
Q 048827 162 SLLQTLSLGGNRLKGPIPPSL--GNLRNLLVINLGKNSVSGPIP----PTFISFLSLQSLDFSFNLLSGFIPDALVRSQN 235 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 235 (576)
++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555444 455555555555555544322 22334555555555555555555555555555
Q ss_pred CCEEEccCCccccc--C--chhhcCCCCCCeEEeecccCcCCChh----hhcCCCCCcEEEccCCcCccccCccccCC--
Q 048827 236 LTYIDLSNNQFSGK--F--PISICGLANLQDLSLSHNQLTGTIPE----QIGGLRSLNSLKLSEMDSQIRLPIILGRG-- 305 (576)
Q Consensus 236 L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~L~~~~~~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~-- 305 (576)
|++|++++|++.+. + +..+..+++|++|++++|.++ .++. .++.+++|++|++++|.+.+..|. .+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhcc
Confidence 55555555554321 1 112245555666666666554 2221 134455555555555555544332 1122
Q ss_pred -CCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcC
Q 048827 306 -IPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLL 366 (576)
Q Consensus 306 -~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 366 (576)
+++|++|++++|.++ .+|..+. .+|++|++++|.+.+. |.+..+++|++|++++|.+
T Consensus 249 ~~~~L~~L~Ls~N~l~--~lp~~~~-~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE--QVPKGLP-AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCTTCCCEECCSSCCC--SCCSCCC-SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred CcCcCCEEECCCCCCC--chhhhhc-CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence 245555555555554 3333221 2444444444443322 2222334444444444443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=7e-21 Score=180.48 Aligned_cols=178 Identities=18% Similarity=0.207 Sum_probs=100.5
Q ss_pred CCCEEecCCCCCCccCCcccccCCCCCCEEEccCCC-CCcCCCccccCCCCCCEEEccC-CcCCCCCCccCCCCCCCcEE
Q 048827 114 FLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNS-LEGSIPPGLGHLSLLQTLSLGG-NRLKGPIPPSLGNLRNLLVI 191 (576)
Q Consensus 114 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~l~~l~~L~~L~L~~-~~~~~~~p~~l~~l~~L~~L 191 (576)
+|++|++++ +.+++..+..|+.+++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666 55554444456666666666666665 5544444566666666666666 66664444556666666666
Q ss_pred EccCCcccccCcccccCCCCCC---EEEcccC-CCcccCCccccCCCCCC-EEEccCCcccccCchhhcCCCCCCeEEee
Q 048827 192 NLGKNSVSGPIPPTFISFLSLQ---SLDFSFN-LLSGFIPDALVRSQNLT-YIDLSNNQFSGKFPISICGLANLQDLSLS 266 (576)
Q Consensus 192 ~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~L~ 266 (576)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++ .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 666666653 443 55555555 6666666 55544444555666666 6666666655 333322222556666666
Q ss_pred ccc-CcCCChhhhcCC-CCCcEEEccCCcCc
Q 048827 267 HNQ-LTGTIPEQIGGL-RSLNSLKLSEMDSQ 295 (576)
Q Consensus 267 ~~~-~~~~~~~~l~~l-~~L~~L~L~~~~~~ 295 (576)
+|+ +++..+..|..+ ++|++|++++|.+.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 653 543334445555 55555555555544
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.2e-22 Score=201.25 Aligned_cols=250 Identities=16% Similarity=0.187 Sum_probs=134.0
Q ss_pred CCEEecCCCCCCccCCcccccCC--CCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCC-CCccCCCCCCCcEE
Q 048827 115 LEVMVISGMKHITGPIPESLSNL--TRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGP-IPPSLGNLRNLLVI 191 (576)
Q Consensus 115 L~~L~L~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L 191 (576)
++.+++++ +.+. +..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~-~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTG-KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTT-CBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeecccc-ccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 55666665 3332 3444444 5666666666666644333 44566666666666665533 45555666666666
Q ss_pred EccCCcccccCcccccCCCCCCEEEcccC-CCccc-CCccccCCCCCCEEEccCC-ccccc-CchhhcCCC-CCCeEEee
Q 048827 192 NLGKNSVSGPIPPTFISFLSLQSLDFSFN-LLSGF-IPDALVRSQNLTYIDLSNN-QFSGK-FPISICGLA-NLQDLSLS 266 (576)
Q Consensus 192 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~L~ 266 (576)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666666555556666666666666666 45432 4444556666666666666 55533 344455566 66666666
Q ss_pred cc--cCc-CCChhhhcCCCCCcEEEccCCc-CccccCccccCCCCCCCEEECcCCC-CCCCCCCCcCCCCCccEEEccCC
Q 048827 267 HN--QLT-GTIPEQIGGLRSLNSLKLSEMD-SQIRLPIILGRGIPSLLSIDLSYNN-LSLGTVPNWIKDRPLSNVNLAGC 341 (576)
Q Consensus 267 ~~--~~~-~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~ 341 (576)
+| .++ +.++..+..+++|++|++++|. +....+. .+..+++|++|++++|. +....+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~----------------- 265 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL----------------- 265 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-----------------
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-----------------
Confidence 66 233 2334445556666666666665 3333332 34445555555555552 211111
Q ss_pred cCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCC
Q 048827 342 KLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE 396 (576)
Q Consensus 342 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 396 (576)
..+..+++|++|++++| +++.....+. .++..|++++|.+++..+.
T Consensus 266 ------~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 266 ------LELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp ------GGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred ------HHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence 11233466666776666 4432222221 2344555677777655554
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=4e-22 Score=201.30 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=99.5
Q ss_pred ecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCC----ccccCCC-CCCEEEccCCcCCCCCCccCCCC-----CCC
Q 048827 119 VISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIP----PGLGHLS-LLQTLSLGGNRLKGPIPPSLGNL-----RNL 188 (576)
Q Consensus 119 ~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p----~~l~~l~-~L~~L~L~~~~~~~~~p~~l~~l-----~~L 188 (576)
+++. +.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 4 ~ls~-n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTL-HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCC-CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccc-ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3444 44555555555445556666666555554333 4445555 56666666665554444444432 556
Q ss_pred cEEEccCCcccccCcccc----cCC-CCCCEEEcccCCCcccCCccc----cC-CCCCCEEEccCCcccccCchh----h
Q 048827 189 LVINLGKNSVSGPIPPTF----ISF-LSLQSLDFSFNLLSGFIPDAL----VR-SQNLTYIDLSNNQFSGKFPIS----I 254 (576)
Q Consensus 189 ~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~~~~~~~~~----l 254 (576)
++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+.. +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666665554444322 223 556666666665554443332 22 245666666666555433322 2
Q ss_pred cCCC-CCCeEEeecccCcCCChhhhc----CC-CCCcEEEccCCcCccc----cCccccCCCCCCCEEECcCCCCC
Q 048827 255 CGLA-NLQDLSLSHNQLTGTIPEQIG----GL-RSLNSLKLSEMDSQIR----LPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 255 ~~l~-~L~~L~L~~~~~~~~~~~~l~----~l-~~L~~L~L~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
..++ +|++|++++|.+++..+..+. .. ++|++|++++|.+... ++.......++|++|++++|.++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 3333 566666666665544443322 23 3566666666655432 11111111345666666666554
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=5.1e-20 Score=175.84 Aligned_cols=179 Identities=22% Similarity=0.214 Sum_probs=118.7
Q ss_pred CCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEc
Q 048827 114 FLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINL 193 (576)
Q Consensus 114 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l 193 (576)
..+++++++ +.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 15 ~~~~l~~~~-~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQG-KSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTT-CCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCC-CCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 455666666 4443 4555443 56777777777777666666777777777777777777666666677777777777
Q ss_pred cCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCC
Q 048827 194 GKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGT 273 (576)
Q Consensus 194 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 273 (576)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77777766556667777777777777777755555566677777777777777655555666677777777777776655
Q ss_pred ChhhhcCCCCCcEEEccCCcCcc
Q 048827 274 IPEQIGGLRSLNSLKLSEMDSQI 296 (576)
Q Consensus 274 ~~~~l~~l~~L~~L~L~~~~~~~ 296 (576)
.+..+..+++|++|++++|.+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 55556666666666666665543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.4e-22 Score=206.77 Aligned_cols=184 Identities=19% Similarity=0.253 Sum_probs=129.3
Q ss_pred CCccEEEccCCcCCC----ccchhhhCCCCCCeEEccCCcceeeCCC-----CCCC---------CCCCEEEccCCcCc-
Q 048827 354 DSLSSIDLSNNLLTD----GISSFFTNMSSLQNIKLSNNQLKFDVSE-----IRFP---------DGLASIDLHSNQIT- 414 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~-----~~~~---------~~L~~L~ls~n~~~- 414 (576)
++|++|++++|.+++ .++..+..+++|++|++++|.+....+. +..+ ++|++|++++|+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 444555555555444 3444555666666666666665322111 1122 67888888888876
Q ss_pred cccch---hhhhhccCCcCEEEccCCcCcc-----cCC-CCCCCCCCcEEEccCCcCC----ccChhhhhcCccCCeeeC
Q 048827 415 GSLSS---IINNRTSSFLEALDVSGNHFSG-----EIP-EFTEGLSLKVLNIGSNKIT----GHIPSSISNLIELEMLDI 481 (576)
Q Consensus 415 ~~~~~---~~~~~~~~~L~~L~l~~n~~~~-----~~~-~~~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L 481 (576)
..++. .+...+ +|++|++++|.+.. ..+ .+..+++|+.|+|++|.++ ..+|..+..+++|++|+|
T Consensus 174 ~~~~~l~~~l~~~~--~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 174 GSMKEWAKTFQSHR--LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp GGHHHHHHHHHHCT--TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred HHHHHHHHHHHhCC--CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 33442 233333 48888888888873 344 4777889999999999986 567888899999999999
Q ss_pred ccCcCCcc----CcccccC--CCCCCEEeCCCCcCcc----cccccc-cCCCCCCEEEccCCcceecCC
Q 048827 482 QRNQIAGT----IPTSLGL--LSKLQWLDVSVNSLTG----KIPTSL-LGIRGLRHANFRANRLCGEIP 539 (576)
Q Consensus 482 s~n~~~~~----~p~~l~~--l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~l~~n~l~g~iP 539 (576)
++|.+++. ++..+.. +++|++|+|++|++++ .+|..+ .++++|++|++++|++.+..|
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999865 5666643 8999999999999997 478777 568999999999999987665
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.1e-20 Score=177.24 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=150.5
Q ss_pred CCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCc-CCCCCCccCCCCCCCcEEEccC-CcccccCcccccCCCCCCEE
Q 048827 138 TRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNR-LKGPIPPSLGNLRNLLVINLGK-NSVSGPIPPTFISFLSLQSL 215 (576)
Q Consensus 138 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~-~~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L 215 (576)
++|++|++++|.+++..+..+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999996666688999999999999997 7755556788999999999998 88887777788999999999
Q ss_pred EcccCCCcccCCccccCCCCCC---EEEccCC-cccccCchhhcCCCCCC-eEEeecccCcCCChhhhcCCCCCcEEEcc
Q 048827 216 DFSFNLLSGFIPDALVRSQNLT---YIDLSNN-QFSGKFPISICGLANLQ-DLSLSHNQLTGTIPEQIGGLRSLNSLKLS 290 (576)
Q Consensus 216 ~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 290 (576)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++ .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999886 565 77888888 9999999 88866666788889999 9999998887 444433333788888888
Q ss_pred CCc-CccccCccccCCC-CCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCC
Q 048827 291 EMD-SQIRLPIILGRGI-PSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGC 341 (576)
Q Consensus 291 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 341 (576)
+|. +. .++...+..+ ++|++|++++|.++ .+|.. ...+|+.|++.++
T Consensus 188 ~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~--~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT--ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCC-EECTTTTTTCSBCCSEEECTTCCCC--CCCCT-TCTTCSEEECTTC
T ss_pred CCCCcc-cCCHHHhhccccCCcEEECCCCccc--cCChh-HhccCceeeccCc
Confidence 885 55 3333356667 77888888887776 33332 2335555555443
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=2.2e-22 Score=203.24 Aligned_cols=261 Identities=22% Similarity=0.186 Sum_probs=166.5
Q ss_pred EEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCC----ccCCCCC-CCcEEEccCCcccccCcccccCC-----CC
Q 048827 142 QLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIP----PSLGNLR-NLLVINLGKNSVSGPIPPTFISF-----LS 211 (576)
Q Consensus 142 ~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 211 (576)
+++++.|.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888887777777777778899998888886555 5677777 88888888888887767666664 78
Q ss_pred CCEEEcccCCCcccCCccc----cCC-CCCCEEEccCCcccccCchhhc----C-CCCCCeEEeecccCcCCChh----h
Q 048827 212 LQSLDFSFNLLSGFIPDAL----VRS-QNLTYIDLSNNQFSGKFPISIC----G-LANLQDLSLSHNQLTGTIPE----Q 277 (576)
Q Consensus 212 L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~~~~~~~~~l~----~-l~~L~~L~L~~~~~~~~~~~----~ 277 (576)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+.+..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888876665543 344 7888888888888766665543 3 35888888888887754433 3
Q ss_pred hcCCC-CCcEEEccCCcCccccCcc---ccCCC-CCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCC
Q 048827 278 IGGLR-SLNSLKLSEMDSQIRLPII---LGRGI-PSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTR 352 (576)
Q Consensus 278 l~~l~-~L~~L~L~~~~~~~~~~~~---~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 352 (576)
+...+ +|++|++++|.+....+.. .+..+ ++|++|++++|.++...... ....+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~-------------------l~~~l~~ 222 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE-------------------LAYIFSS 222 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH-------------------HHHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH-------------------HHHHHhc
Confidence 34444 7777777777665543321 12233 36666666666554111000 0001111
Q ss_pred -CCCccEEEccCCcCCCccc----hhhhCCCCCCeEEccCCccee--------eCCCCCCCCCCCEEEccCCcCccccch
Q 048827 353 -PDSLSSIDLSNNLLTDGIS----SFFTNMSSLQNIKLSNNQLKF--------DVSEIRFPDGLASIDLHSNQITGSLSS 419 (576)
Q Consensus 353 -~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~~~~--------~~~~~~~~~~L~~L~ls~n~~~~~~~~ 419 (576)
.++|++|++++|.+++..+ ..+..+++|+.|++++|.+.. ....+..+++|+.|++++|++....+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 2467777777777766443 233456677777777776321 112355666777777777777665444
Q ss_pred hh
Q 048827 420 II 421 (576)
Q Consensus 420 ~~ 421 (576)
.+
T Consensus 303 ~~ 304 (362)
T 3goz_A 303 PI 304 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=184.41 Aligned_cols=225 Identities=22% Similarity=0.191 Sum_probs=176.4
Q ss_pred CCCCEEecCCCCCCccC-Ccc--cccCCCCCCEEEccCCCCCcCCCccc--cCCCCCCEEEccCCcCCCCCC----ccCC
Q 048827 113 HFLEVMVISGMKHITGP-IPE--SLSNLTRLTQLILEDNSLEGSIPPGL--GHLSLLQTLSLGGNRLKGPIP----PSLG 183 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~~-~~~--~l~~l~~L~~L~l~~~~~~~~~p~~l--~~l~~L~~L~L~~~~~~~~~p----~~l~ 183 (576)
..++.+.+.+ ..++.. +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGA-AQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECS-CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeC-CcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3567788876 333321 111 12235679999999999998888888 899999999999999986554 3456
Q ss_pred CCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCccc--C--CccccCCCCCCEEEccCCcccccCch----hhc
Q 048827 184 NLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGF--I--PDALVRSQNLTYIDLSNNQFSGKFPI----SIC 255 (576)
Q Consensus 184 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~ 255 (576)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 789999999999999988888999999999999999987642 2 233468899999999999987 3333 257
Q ss_pred CCCCCCeEEeecccCcCCChhhhcCC---CCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCC
Q 048827 256 GLANLQDLSLSHNQLTGTIPEQIGGL---RSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRP 332 (576)
Q Consensus 256 ~l~~L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 332 (576)
.+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|... .++|++|++++|.++ .+|.....++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---~~~L~~L~Ls~N~l~--~~~~~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL---PAKLRVLDLSSNRLN--RAPQPDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC---CSCCSCEECCSCCCC--SCCCTTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh---cCCCCEEECCCCcCC--CCchhhhCCC
Confidence 88999999999999998777777766 69999999999988 455422 389999999999998 4455555679
Q ss_pred ccEEEccCCcCcc
Q 048827 333 LSNVNLAGCKLRG 345 (576)
Q Consensus 333 L~~L~l~~~~~~~ 345 (576)
|+.|++++|.+..
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999998864
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.5e-22 Score=202.97 Aligned_cols=243 Identities=19% Similarity=0.203 Sum_probs=174.3
Q ss_pred eecCccccCCCCCCEEecCCCCCCccC----CcccccCCCCCCEEEccCCC---CCcCCCccc-------cCCCCCCEEE
Q 048827 103 GTLPAALGNLHFLEVMVISGMKHITGP----IPESLSNLTRLTQLILEDNS---LEGSIPPGL-------GHLSLLQTLS 168 (576)
Q Consensus 103 ~~~~~~l~~l~~L~~L~L~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~---~~~~~p~~l-------~~l~~L~~L~ 168 (576)
..++..+..+++|++|++++ +.+.+. ++..+..+++|++|++++|. +.+.+|..+ .++++|++|+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 35666777888888888888 555544 33446788888888888863 444555554 6788888888
Q ss_pred ccCCcCCC----CCCccCCCCCCCcEEEccCCcccccCccc----ccCC---------CCCCEEEcccCCCc-ccCC---
Q 048827 169 LGGNRLKG----PIPPSLGNLRNLLVINLGKNSVSGPIPPT----FISF---------LSLQSLDFSFNLLS-GFIP--- 227 (576)
Q Consensus 169 L~~~~~~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l---------~~L~~L~l~~n~l~-~~~~--- 227 (576)
+++|.+.. .+|..+.++++|++|++++|.++...+.. +..+ ++|++|++++|.++ +.++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 88888876 35667778888888888888886443333 3333 78888888888886 3333
Q ss_pred ccccCCCCCCEEEccCCccccc-----CchhhcCCCCCCeEEeecccCc----CCChhhhcCCCCCcEEEccCCcCccc-
Q 048827 228 DALVRSQNLTYIDLSNNQFSGK-----FPISICGLANLQDLSLSHNQLT----GTIPEQIGGLRSLNSLKLSEMDSQIR- 297 (576)
Q Consensus 228 ~~l~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~L~~~~~~----~~~~~~l~~l~~L~~L~L~~~~~~~~- 297 (576)
..+..+++|++|++++|.++.. .+..+..+++|++|++++|.++ ..+|..+..+++|++|++++|.+...
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 3566788888888888887632 3336778888888888888885 45677788888888888888887654
Q ss_pred ---cCcccc--CCCCCCCEEECcCCCCCCC---CCCCcC-C-CCCccEEEccCCcCccCC
Q 048827 298 ---LPIILG--RGIPSLLSIDLSYNNLSLG---TVPNWI-K-DRPLSNVNLAGCKLRGAL 347 (576)
Q Consensus 298 ---~~~~~~--~~~~~L~~L~l~~~~l~~~---~~~~~~-~-~~~L~~L~l~~~~~~~~~ 347 (576)
++. .+ ..+++|++|++++|.++.. .+|..+ . .++|++|++++|.+.+..
T Consensus 261 ~~~l~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 222 23 3478888888888888721 255544 3 468889999888887554
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=5.4e-20 Score=181.11 Aligned_cols=192 Identities=23% Similarity=0.406 Sum_probs=111.9
Q ss_pred CCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcE
Q 048827 111 NLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLV 190 (576)
Q Consensus 111 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 190 (576)
++++|++|++++ +.+.. ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+.+ ++ .+..+++|++
T Consensus 39 ~l~~L~~L~l~~-~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFG-TGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred HcCCcCEEEeeC-CCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence 455666666666 33332 33 45666666666666666663 333 6666666666666666653 22 4666666666
Q ss_pred EEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccC
Q 048827 191 INLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQL 270 (576)
Q Consensus 191 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~ 270 (576)
|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 66666666542 2 26666666666666666654322 5566666666666666653 222 56666666666666666
Q ss_pred cCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEEECcCCCCC
Q 048827 271 TGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 271 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
++..+ +..+++|++|++++|.+....+ +..+++|++|++++|.++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeee
Confidence 53322 5556666666666665554332 345555666666555554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1e-19 Score=179.20 Aligned_cols=193 Identities=24% Similarity=0.353 Sum_probs=144.4
Q ss_pred ccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCC
Q 048827 134 LSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQ 213 (576)
Q Consensus 134 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 213 (576)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 456889999999999988 455 68889999999999999984 444 88999999999999998753 3688899999
Q ss_pred EEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCc
Q 048827 214 SLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMD 293 (576)
Q Consensus 214 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 293 (576)
+|++++|.+++. + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. +. +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 999999988864 3 388889999999999988754 33 78888899999998888753 33 7788888888888887
Q ss_pred CccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcC
Q 048827 294 SQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKL 343 (576)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 343 (576)
+....+ +..+++|++|++++|.++ .++.+...++|+.|++++|.+
T Consensus 185 l~~~~~---l~~l~~L~~L~L~~N~l~--~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 185 ISDISP---LASLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCCGG---GGGCTTCCEEECTTSCCC--BCGGGTTCTTCCEEEEEEEEE
T ss_pred cCcChh---hcCCCCCCEEEccCCccC--ccccccCCCCCCEEEccCCee
Confidence 765432 456677777777777665 222233333444444444444
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.2e-19 Score=167.91 Aligned_cols=164 Identities=21% Similarity=0.222 Sum_probs=139.3
Q ss_pred CCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEE
Q 048827 112 LHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVI 191 (576)
Q Consensus 112 l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 191 (576)
.++|++|++++ +.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|
T Consensus 27 ~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 35899999998 67776666678899999999999999986555567899999999999999986666668899999999
Q ss_pred EccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCc
Q 048827 192 NLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 192 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~ 271 (576)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 999999987777778999999999999999997777778889999999999997763 4568899999999999
Q ss_pred CCChhhhcCCCC
Q 048827 272 GTIPEQIGGLRS 283 (576)
Q Consensus 272 ~~~~~~l~~l~~ 283 (576)
|.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 999988876654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.9e-19 Score=177.15 Aligned_cols=229 Identities=18% Similarity=0.156 Sum_probs=142.5
Q ss_pred CCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCC-ccCCCCCCCcE-EEccCCcccccCcccc
Q 048827 129 PIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIP-PSLGNLRNLLV-INLGKNSVSGPIPPTF 206 (576)
Q Consensus 129 ~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~-L~l~~n~~~~~~~~~l 206 (576)
.+|..+ .+++++|++++|+++...+..|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+..|+++...|..|
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 345444 3567777777777774333457777777777777777654444 34666776654 4455677776666777
Q ss_pred cCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccC-CcccccCchhhcCCC-CCCeEEeecccCcCCChhhhcCCCCC
Q 048827 207 ISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSN-NQFSGKFPISICGLA-NLQDLSLSHNQLTGTIPEQIGGLRSL 284 (576)
Q Consensus 207 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~l~~l~~L 284 (576)
..+++|++|++++|.++...+..+....++..+++.+ +.+....+..+..+. .++.|++++|.++. ++.......+|
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccch
Confidence 7777777777777777755555555566666777755 345433344455543 57777777777763 44444455677
Q ss_pred cEEEccCCcCccccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccC
Q 048827 285 NSLKLSEMDSQIRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSN 363 (576)
Q Consensus 285 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~ 363 (576)
+++++.++.....++...+..+++|++|++++|.++ .+|.. ...+|+.|.+.++.....+|.+..+++|+.+++.+
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp~~-~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLPSY-GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC--CCCSS-SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC--ccChh-hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 777777665556666556677777778888777776 44432 12356666665555444555555556666666544
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.8e-18 Score=162.52 Aligned_cols=166 Identities=22% Similarity=0.246 Sum_probs=116.4
Q ss_pred CCCCCCCCCCCCCCcCcEEcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCC
Q 048827 59 ILASWMGKDCCGGDWEGVVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLT 138 (576)
Q Consensus 59 ~~~~w~~~~~c~~~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~ 138 (576)
.-..|.+...| .|.++.|... ..+.+|..+. ++|++|++++ +.+++..|..|..++
T Consensus 9 ~~~~~~~~~~C--s~~~v~c~~~-------------------~l~~ip~~~~--~~L~~L~Ls~-n~i~~~~~~~~~~l~ 64 (229)
T 3e6j_A 9 HSAACPSQCSC--SGTTVDCRSK-------------------RHASVPAGIP--TNAQILYLHD-NQITKLEPGVFDSLI 64 (229)
T ss_dssp --CCCCTTCEE--ETTEEECTTS-------------------CCSSCCSCCC--TTCSEEECCS-SCCCCCCTTTTTTCT
T ss_pred hhccCCCCCEE--eCCEeEccCC-------------------CcCccCCCCC--CCCCEEEcCC-CccCccCHHHhhCcc
Confidence 34455688889 9999999731 1234444433 6778888887 667766677777788
Q ss_pred CCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcc
Q 048827 139 RLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFS 218 (576)
Q Consensus 139 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 218 (576)
+|++|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 8888888888776444455677778888888888777555555677777777777777777 566677777777777777
Q ss_pred cCCCcccCCccccCCCCCCEEEccCCccccc
Q 048827 219 FNLLSGFIPDALVRSQNLTYIDLSNNQFSGK 249 (576)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 249 (576)
+|.+++..+..+..+++|++|++++|++...
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 7777765556677777777777777776643
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=3.5e-18 Score=171.50 Aligned_cols=239 Identities=17% Similarity=0.148 Sum_probs=149.1
Q ss_pred CEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCc-ccccCCCCCCE-EEcc
Q 048827 141 TQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIP-PTFISFLSLQS-LDFS 218 (576)
Q Consensus 141 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~ 218 (576)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788888888 677766 3678888888888884444567888888888888888765544 45677777665 4556
Q ss_pred cCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecc-cCcCCChhhhcCCCCCcEEEccCCcCccc
Q 048827 219 FNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN-QLTGTIPEQIGGLRSLNSLKLSEMDSQIR 297 (576)
Q Consensus 219 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 297 (576)
.|+++...|+.|..+++|++|++++|.++...+..+....++..+++.++ .+....+..|..+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------- 153 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------- 153 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc---------------
Confidence 67777666777777777777777777777555545555556666666543 33322222232222
Q ss_pred cCccccCCCCCCCEEECcCCCCCCCCCCC-cCCCCCccEEEccCCcCccCCCC--CCCCCCccEEEccCCcCCCccchhh
Q 048827 298 LPIILGRGIPSLLSIDLSYNNLSLGTVPN-WIKDRPLSNVNLAGCKLRGALPK--FTRPDSLSSIDLSNNLLTDGISSFF 374 (576)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~ 374 (576)
..++.|++++|.++ .++. .+...+|+++++.++...+.+|. +..+++|++|++++|+++...+..
T Consensus 154 ---------~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~- 221 (350)
T 4ay9_X 154 ---------FESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG- 221 (350)
T ss_dssp ---------SSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-
T ss_pred ---------hhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh-
Confidence 23445555555554 2222 22333666666665333333432 455678888888888887644433
Q ss_pred hCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCC
Q 048827 375 TNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSN 411 (576)
Q Consensus 375 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n 411 (576)
+.+|+.|.+.++.-....|.+..+++|+.+++.++
T Consensus 222 --~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 --LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp --CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred --hccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 44566666555544445666777778888877653
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.9e-18 Score=159.94 Aligned_cols=155 Identities=23% Similarity=0.184 Sum_probs=88.8
Q ss_pred CCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEc
Q 048827 138 TRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDF 217 (576)
Q Consensus 138 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 217 (576)
++|++|++++|.+++..+..++++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 46666666666666444444566666666666666666444444566666666666666666544445566666666666
Q ss_pred ccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccc
Q 048827 218 SFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIR 297 (576)
Q Consensus 218 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 297 (576)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 6666665544455556666666666666654444445555666666665554432 233455555555555544
Q ss_pred cC
Q 048827 298 LP 299 (576)
Q Consensus 298 ~~ 299 (576)
+|
T Consensus 181 ip 182 (208)
T 2o6s_A 181 VR 182 (208)
T ss_dssp BB
T ss_pred ee
Confidence 44
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.8e-18 Score=182.70 Aligned_cols=192 Identities=25% Similarity=0.307 Sum_probs=154.8
Q ss_pred CcCcE-EcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCC
Q 048827 72 DWEGV-VCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSL 150 (576)
Q Consensus 72 ~w~~v-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 150 (576)
.|.++ .|. .++++.|+++++. +.+ +|..+ +++|++|++++ +.++ .+| ..+++|++|++++|.+
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~n~------L~~-lp~~l--~~~L~~L~Ls~-N~l~-~ip---~~l~~L~~L~Ls~N~l 112 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNRLN------LSS-LPDNL--PPQITVLEITQ-NALI-SLP---ELPASLEYLDACDNRL 112 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCSSC------CSC-CCSCC--CTTCSEEECCS-SCCS-CCC---CCCTTCCEEECCSSCC
T ss_pred hhhhccccc--cCCccEEEeCCCC------CCc-cCHhH--cCCCCEEECcC-CCCc-ccc---cccCCCCEEEccCCCC
Confidence 58888 675 3578999999887 444 77766 37899999998 6666 567 4578999999999999
Q ss_pred CcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccc
Q 048827 151 EGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDAL 230 (576)
Q Consensus 151 ~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 230 (576)
++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +
T Consensus 113 ~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 113 ST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp SC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C
T ss_pred CC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h
Confidence 95 777 665 99999999999985 665 68999999999999985 555 57899999999999986 666 6
Q ss_pred cCCCCCCEEEccCCcccccCchhhcCCCCC-------CeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCc
Q 048827 231 VRSQNLTYIDLSNNQFSGKFPISICGLANL-------QDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPI 300 (576)
Q Consensus 231 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 300 (576)
. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+.+..|.
T Consensus 179 ~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 5 89999999999998 6666 554 67 99999999998 5777777899999999999988776654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=9.2e-18 Score=177.35 Aligned_cols=187 Identities=27% Similarity=0.413 Sum_probs=103.0
Q ss_pred CCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccCCCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEcc
Q 048827 307 PSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGALPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLS 386 (576)
Q Consensus 307 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 386 (576)
.+++.|++++|.++ .+|..+. .+|+.|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~--~lp~~l~-~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLS--SLPDNLP-PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCS--CCCSCCC-TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCC--ccCHhHc-CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 37888888888876 3665332 46777777777776 344 334777777777777766 444 443 67777777
Q ss_pred CCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccC
Q 048827 387 NNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHI 466 (576)
Q Consensus 387 ~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 466 (576)
+|.+++ ++. .+++|+.|++++|.+++ +|. . .++|++|++++|.+.+ +|.+. ++|+.|++++|+++ .+
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~--l~~L~~L~Ls~N~L~~-lp~l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE---L--PTSLEVLSVRNNQLTF-LPELP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---C--CTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc-CCC---c--CCCcCEEECCCCCCCC-cchhh--CCCCEEECcCCCCC-ch
Confidence 776665 333 45666666666666654 222 1 1225555555555554 33322 45555555555555 33
Q ss_pred hhhhhcCccC-------CeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccC
Q 048827 467 PSSISNLIEL-------EMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLG 520 (576)
Q Consensus 467 ~~~l~~l~~L-------~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 520 (576)
|. +.. +| +.|+|++|.++ .+|..+..+++|++|+|++|++++.+|..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 33 322 34 55555555554 34444444555555555555555544444433
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.9e-17 Score=154.28 Aligned_cols=152 Identities=24% Similarity=0.334 Sum_probs=85.4
Q ss_pred CEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccC
Q 048827 116 EVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGK 195 (576)
Q Consensus 116 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 195 (576)
+.++.++ +.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~-~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRG-KGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTT-SCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCC-CCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4455554 3333 3444332 4566666666666644444566666666666666666655555566666666666666
Q ss_pred CcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCc
Q 048827 196 NSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 196 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~ 271 (576)
|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6665444444555666666666666665555555555566666666666555444444555555555555555554
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.4e-17 Score=162.34 Aligned_cols=169 Identities=28% Similarity=0.416 Sum_probs=70.5
Q ss_pred CCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEE
Q 048827 137 LTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLD 216 (576)
Q Consensus 137 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 216 (576)
+++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++ + ..+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 344444444444443 222 234444444444444444422 11 4444444444444444432 1 1244444444444
Q ss_pred cccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCcc
Q 048827 217 FSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQI 296 (576)
Q Consensus 217 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 296 (576)
+++|.+++. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+..
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 444444422 2344444444444444444422 234444444444444444443222 4444444444444444433
Q ss_pred ccCccccCCCCCCCEEECcCCCCC
Q 048827 297 RLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
. + .+..+++|+.|++++|.+.
T Consensus 193 l-~--~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 L-R--ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp C-G--GGTTCTTCSEEEEEEEEEE
T ss_pred C-h--hhccCCCCCEEECcCCccc
Confidence 2 1 2344455555555555443
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.1e-17 Score=152.93 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=115.4
Q ss_pred EEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCE
Q 048827 87 GLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQT 166 (576)
Q Consensus 87 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 166 (576)
.+++++.. ...+|..+. +++++|++++ +.+++..+..|..+++|++|++++|.+++..|..|.++++|++
T Consensus 15 ~v~c~~~~-------l~~iP~~l~--~~l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 15 IVDCRGKG-------LTEIPTNLP--ETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp EEECTTSC-------CSSCCSSCC--TTCCEEECCS-SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred EEEcCCCC-------cCcCCCccC--cCCCEEECCC-CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 45666654 345665554 6788888887 6666655667888888888888888888777778888888888
Q ss_pred EEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcc
Q 048827 167 LSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQF 246 (576)
Q Consensus 167 L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 246 (576)
|++++|.++...+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 88888888855445567788888888888888877777888888888888888888877777788888888888888877
Q ss_pred c
Q 048827 247 S 247 (576)
Q Consensus 247 ~ 247 (576)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 5
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=153.03 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=99.5
Q ss_pred CEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCC-ccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEcc
Q 048827 116 EVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIP-PGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLG 194 (576)
Q Consensus 116 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 194 (576)
+++++++ +.++ .+|..+ ...+++|++++|.+++..+ ..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 14 ~~l~~s~-n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSN-QKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCS-SCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCC-CCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 4666666 4443 355544 2345677777777765433 236667777777777777765555566677777777777
Q ss_pred CCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCC
Q 048827 195 KNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGT 273 (576)
Q Consensus 195 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 273 (576)
+|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+...
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 7777666666666677777777777777666666666666777777777766665566666666666666666666543
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.5e-17 Score=151.78 Aligned_cols=153 Identities=16% Similarity=0.232 Sum_probs=113.3
Q ss_pred EEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCc-ccccCCCCCCEEEccCCCCCcCCCccccCCCCCC
Q 048827 87 GLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIP-ESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQ 165 (576)
Q Consensus 87 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 165 (576)
.++++++. ...+|..+. +.+++|++++ +.+++..+ ..|..+++|++|++++|.+++..+..|.++++|+
T Consensus 15 ~l~~s~n~-------l~~iP~~~~--~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 15 TVDCSNQK-------LNKIPEHIP--QYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp EEECCSSC-------CSSCCSCCC--TTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred EeEeCCCC-------cccCccCCC--CCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 56776665 344665543 3457888887 56665433 4577788888888888888766666788888888
Q ss_pred EEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCc
Q 048827 166 TLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQ 245 (576)
Q Consensus 166 ~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 245 (576)
+|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 88888888876666667788888888888888887777778888888888888888887777778888888888888887
Q ss_pred cccc
Q 048827 246 FSGK 249 (576)
Q Consensus 246 ~~~~ 249 (576)
+...
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 7644
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.1e-17 Score=151.41 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=79.3
Q ss_pred cCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCE
Q 048827 135 SNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQS 214 (576)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 214 (576)
+.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455555555555555 334 4555555555555555443 2224555555555555555555444555555555555
Q ss_pred EEcccCCCcccCCccccCCCCCCEEEccCCc-ccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCc
Q 048827 215 LDFSFNLLSGFIPDALVRSQNLTYIDLSNNQ-FSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMD 293 (576)
Q Consensus 215 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 293 (576)
|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 5555555555445555555555555555555 33 333 45555555555555555553 22 45555556666665554
Q ss_pred C
Q 048827 294 S 294 (576)
Q Consensus 294 ~ 294 (576)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 3
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=7.7e-17 Score=151.27 Aligned_cols=153 Identities=24% Similarity=0.274 Sum_probs=90.0
Q ss_pred CEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccC
Q 048827 116 EVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGK 195 (576)
Q Consensus 116 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 195 (576)
+.++.++ +.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 22 ~~v~c~~-~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRS-KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTT-SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccC-CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4455554 3332 3444332 5666666666666655566666666666666666666544334456666666666666
Q ss_pred CcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCC
Q 048827 196 NSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGT 273 (576)
Q Consensus 196 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 273 (576)
|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++.+|.+...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 6666555555566666666666666665 4555566666666666666666644444555566666666666655543
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.8e-17 Score=160.21 Aligned_cols=173 Identities=28% Similarity=0.463 Sum_probs=139.0
Q ss_pred ccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCC
Q 048827 109 LGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNL 188 (576)
Q Consensus 109 l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 188 (576)
+..+++|++|++++ +.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+++ ++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~-~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANN-SDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTT-SCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccC-CCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 45678899999988 55543 33 47788999999999998884 444 8889999999999998874 33 48888999
Q ss_pred cEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecc
Q 048827 189 LVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN 268 (576)
Q Consensus 189 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~ 268 (576)
++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999988753 4688889999999999988865 678888999999999998885444 888899999999999
Q ss_pred cCcCCChhhhcCCCCCcEEEccCCcCcc
Q 048827 269 QLTGTIPEQIGGLRSLNSLKLSEMDSQI 296 (576)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 296 (576)
.+++ ++ .+..+++|+.|++++|.+..
T Consensus 189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 8874 44 47888999999999887654
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.3e-17 Score=151.12 Aligned_cols=153 Identities=15% Similarity=0.258 Sum_probs=105.8
Q ss_pred cCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCc
Q 048827 110 GNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLL 189 (576)
Q Consensus 110 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 189 (576)
.++++|++|++++ +.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+.++++|+
T Consensus 41 ~~l~~L~~L~l~~-n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLAN-INVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEES-SCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccC-CCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4567777777777 4554 445 5677777777777777654 234677777777777777777765667777777777
Q ss_pred EEEccCCcccccCcccccCCCCCCEEEcccCC-CcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecc
Q 048827 190 VINLGKNSVSGPIPPTFISFLSLQSLDFSFNL-LSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN 268 (576)
Q Consensus 190 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~ 268 (576)
+|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 77777777776667777777777777777776 44 334 56777777777777777764 33 5667777777777777
Q ss_pred cCc
Q 048827 269 QLT 271 (576)
Q Consensus 269 ~~~ 271 (576)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 664
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4.6e-17 Score=164.00 Aligned_cols=175 Identities=23% Similarity=0.238 Sum_probs=106.0
Q ss_pred EEEcCCCCcCCCCceeeecCccccCCCCCCEEecCCCCCCccCCccccc-CCCCCCEEEccCCCCCcCCCccccCCCCCC
Q 048827 87 GLALQRPDRELGMYMIGTLPAALGNLHFLEVMVISGMKHITGPIPESLS-NLTRLTQLILEDNSLEGSIPPGLGHLSLLQ 165 (576)
Q Consensus 87 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~ 165 (576)
.+++++.. ...+|..+. +.+++|+|++ +.+++..+..+. .+++|++|++++|.+++..+..|.++++|+
T Consensus 22 ~l~c~~~~-------l~~iP~~~~--~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 22 ILSCSKQQ-------LPNVPQSLP--SYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp EEECCSSC-------CSSCCSSCC--TTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred EEEeCCCC-------cCccCccCC--CCCCEEECCC-CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 45666554 334555443 3466677776 555555555555 667777777777776655555666677777
Q ss_pred EEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccc---cCCCCCCEEEcc
Q 048827 166 TLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDAL---VRSQNLTYIDLS 242 (576)
Q Consensus 166 ~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~ 242 (576)
+|+|++|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+ ..+++|++|+++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 77777776665545556666677777777776666666666666666666666666664333333 446666666666
Q ss_pred CCcccccCchhhcCCCC--CCeEEeecccCc
Q 048827 243 NNQFSGKFPISICGLAN--LQDLSLSHNQLT 271 (576)
Q Consensus 243 ~n~~~~~~~~~l~~l~~--L~~L~L~~~~~~ 271 (576)
+|.+++..+..+..++. ++.|++.+|.+.
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 66666444455555554 356666666654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=6.8e-17 Score=172.61 Aligned_cols=173 Identities=28% Similarity=0.454 Sum_probs=103.7
Q ss_pred ccCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCC
Q 048827 109 LGNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNL 188 (576)
Q Consensus 109 l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L 188 (576)
+..+++|++|++++ +.+.. ++ .+..+++|++|+|++|.+.+ ++. +..+++|++|+|++|.+.+ +| .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~-n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANN-SDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTT-CCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred hhcCCCCCEEECcC-CCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 34566666666666 33432 22 46666666667776666663 332 6666666666666666653 23 56666666
Q ss_pred cEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecc
Q 048827 189 LVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHN 268 (576)
Q Consensus 189 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~ 268 (576)
++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 6666666666542 3466666666666666666643 456666666666666666664433 566666666666666
Q ss_pred cCcCCChhhhcCCCCCcEEEccCCcCcc
Q 048827 269 QLTGTIPEQIGGLRSLNSLKLSEMDSQI 296 (576)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 296 (576)
.+.+. + .+..+++|+.|+|++|.+..
T Consensus 186 ~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 66532 2 35566666666666665543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=7.5e-17 Score=162.43 Aligned_cols=177 Identities=23% Similarity=0.168 Sum_probs=149.8
Q ss_pred CEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCcccc-CCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEcc
Q 048827 116 EVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLG-HLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLG 194 (576)
Q Consensus 116 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 194 (576)
+++++++ +.++ .+|..+. +.+++|++++|.+++..+..+. ++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 21 ~~l~c~~-~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSK-QQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCS-SCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC-CCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 5788887 5555 4676553 5689999999999976676777 89999999999999997777789999999999999
Q ss_pred CCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhh---cCCCCCCeEEeecccCc
Q 048827 195 KNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISI---CGLANLQDLSLSHNQLT 271 (576)
Q Consensus 195 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~L~~~~~~ 271 (576)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|+.|+|++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999998777889999999999999999998888999999999999999999995444444 57899999999999999
Q ss_pred CCChhhhcCCCC--CcEEEccCCcCcc
Q 048827 272 GTIPEQIGGLRS--LNSLKLSEMDSQI 296 (576)
Q Consensus 272 ~~~~~~l~~l~~--L~~L~L~~~~~~~ 296 (576)
...+..+..++. ++.|++++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 766677888877 4889999998754
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=8.4e-17 Score=171.93 Aligned_cols=171 Identities=27% Similarity=0.408 Sum_probs=88.0
Q ss_pred cCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCE
Q 048827 135 SNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQS 214 (576)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 214 (576)
..+++|++|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ ++ .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 34555555555555554 233 35555555555555555553222 5555555555555555543 12 4555555555
Q ss_pred EEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcC
Q 048827 215 LDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDS 294 (576)
Q Consensus 215 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 294 (576)
|++++|.+++. +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555555532 3355555555555555555532 345555555555555555554333 55555555555555554
Q ss_pred ccccCccccCCCCCCCEEECcCCCCC
Q 048827 295 QIRLPIILGRGIPSLLSIDLSYNNLS 320 (576)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~l~~~~l~ 320 (576)
... + .+..+++|+.|++++|.+.
T Consensus 188 ~~l-~--~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL-R--ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC-G--GGTTCTTCSEEECCSEEEE
T ss_pred CCC-h--HHccCCCCCEEEccCCcCc
Confidence 432 1 3445555555555555544
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=4.2e-18 Score=186.59 Aligned_cols=235 Identities=17% Similarity=0.181 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCC--CCCCCCCcCcEEcCCCCCCEEEEEcCCCCcCCCCceeeecCccccCCC
Q 048827 36 ICFEADRLVLQEFKAKILKDTTEILASWMG--KDCCGGDWEGVVCNPATGRVTGLALQRPDRELGMYMIGTLPAALGNLH 113 (576)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~--~~~c~~~w~~v~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~l~ 113 (576)
.....++.++.++..+.....+..-..|.. .... .|.+..+. ..+++.+++.+.. + ...+..+....
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s--~~~~~~l~L~~n~------~-~~~~~~~l~~l 196 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG--TATNSAVS--TPLTPKIELFANG------K-DEANQALLQHK 196 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccc--cCCCceec--CCccceEEeeCCC------C-CcchhhHhhcC
Confidence 345567788888876654344444556752 3344 78887776 4788999987765 2 23444444444
Q ss_pred CCCEEecCCC----CCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCc
Q 048827 114 FLEVMVISGM----KHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLL 189 (576)
Q Consensus 114 ~L~~L~L~~~----~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 189 (576)
.|+.+.+... +.+. ..+..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|+
T Consensus 197 ~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 273 (727)
T 4b8c_D 197 KLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLR 273 (727)
T ss_dssp --------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCC
T ss_pred ccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCC
Confidence 4444444321 2222 34677889999999999999998 78888889999999999999999 8898999999999
Q ss_pred EEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCC-CCeEEeecc
Q 048827 190 VINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLAN-LQDLSLSHN 268 (576)
Q Consensus 190 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~L~~~ 268 (576)
+|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..|..+++|++|++++|.+++.+|..+..+.. +..+++.+|
T Consensus 274 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 274 VLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp EEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 9999999998 77989999999999999999987 67888999999999999999999888887765422 234678888
Q ss_pred cCcCCChhhhcCCCCCcEEEccCC
Q 048827 269 QLTGTIPEQIGGLRSLNSLKLSEM 292 (576)
Q Consensus 269 ~~~~~~~~~l~~l~~L~~L~L~~~ 292 (576)
.+++.+|.. |+.|+++.+
T Consensus 352 ~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 352 RPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCCCCCCC---------------
T ss_pred cccCcCccc------cceeEeecc
Confidence 888777653 445555554
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.4e-16 Score=152.68 Aligned_cols=168 Identities=21% Similarity=0.313 Sum_probs=102.1
Q ss_pred CCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEE
Q 048827 112 LHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVI 191 (576)
Q Consensus 112 l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 191 (576)
+.++..+++++ +.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++. +. +.++++|++|
T Consensus 18 l~~l~~l~l~~-~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGK-QSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTC-SCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEE
T ss_pred HHHHHHHHhcC-CCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEE
Confidence 44455555655 44432 22 4566677777777777766 444 566677777777777777643 33 6677777777
Q ss_pred EccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCc
Q 048827 192 NLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 192 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~ 271 (576)
++++|.+++ ++. +.. ++|++|++++|.+++. +.+..+++|++|++++|.+++. + .+..+++|++|++++|.+.
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777664 222 222 6677777777766643 3466666777777777766642 3 4666666666666666666
Q ss_pred CCChhhhcCCCCCcEEEccCCcCc
Q 048827 272 GTIPEQIGGLRSLNSLKLSEMDSQ 295 (576)
Q Consensus 272 ~~~~~~l~~l~~L~~L~L~~~~~~ 295 (576)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 44 44555666666666665544
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=3e-16 Score=150.49 Aligned_cols=168 Identities=24% Similarity=0.374 Sum_probs=103.1
Q ss_pred CccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEc
Q 048827 355 SLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDV 434 (576)
Q Consensus 355 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l 434 (576)
++..++++++.+++.. .+..+++|+.|++++|.+.. .+.+..+++|++|++++|++.+..+ +..... |++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~--L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQISDLSP--LKDLTK--LEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCSS--CCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-chHHhhCCCCCEEECCCCccCCChh--hccCCC--CCEEEC
Confidence 3444455555555432 34555566666666665552 2345555666666666666655443 333322 666666
Q ss_pred cCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccc
Q 048827 435 SGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKI 514 (576)
Q Consensus 435 ~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 514 (576)
++|.+.+ ++.+.. ++|+.|++++|++++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|++++.
T Consensus 93 ~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKN-LNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSC-CTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCC-cCcccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 6666664 333333 6777777777777743 3467777777777777777643 3 567777777777777777754
Q ss_pred cccccCCCCCCEEEccCCcceec
Q 048827 515 PTSLLGIRGLRHANFRANRLCGE 537 (576)
Q Consensus 515 p~~l~~l~~L~~L~l~~n~l~g~ 537 (576)
..+..+++|+.|++++|++.+.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 5567777777777777777644
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=6.2e-19 Score=187.31 Aligned_cols=196 Identities=21% Similarity=0.202 Sum_probs=111.6
Q ss_pred cCCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCC-------------CCcCCCccccCCCCCCEEE-ccCCcCC
Q 048827 110 GNLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNS-------------LEGSIPPGLGHLSLLQTLS-LGGNRLK 175 (576)
Q Consensus 110 ~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~p~~l~~l~~L~~L~-L~~~~~~ 175 (576)
..+++|+.|+|++ +.++ .+|..++.+++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~-n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSV-EKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCH-HHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCCh-hhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 4566677777766 4443 566667777777777765543 3444555566666666666 3433221
Q ss_pred CCCCc------cCCC--CCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCccc
Q 048827 176 GPIPP------SLGN--LRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFS 247 (576)
Q Consensus 176 ~~~p~------~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 247 (576)
.++. .+.. ...|++|++++|.+++ +|. +..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 0000 0000 1236666666666664 444 666666666666666666 55666666666666666666666
Q ss_pred ccCchhhcCCCCCCeEEeecccCcCCC-hhhhcCCCCCcEEEccCCcCccccCcc--ccCCCCCCCEEE
Q 048827 248 GKFPISICGLANLQDLSLSHNQLTGTI-PEQIGGLRSLNSLKLSEMDSQIRLPII--LGRGIPSLLSID 313 (576)
Q Consensus 248 ~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~~L~~L~ 313 (576)
+ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|.+.+..+.. ....+++|+.|+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 3 45 5666666666666666666554 666666666666666666655543321 122355555554
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.6e-16 Score=144.77 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=90.2
Q ss_pred CEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC--CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeC
Q 048827 404 ASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE--FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDI 481 (576)
Q Consensus 404 ~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 481 (576)
++++++++.+.. +|..+.. .+++|++++|.+.+..+. +..+++|++|++++|++++..|..|..+++|++|+|
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCc-CccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 455555555532 2222111 267777777777665553 566777777777777777777777777777777777
Q ss_pred ccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCCC
Q 048827 482 QRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIPQ 540 (576)
Q Consensus 482 s~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP~ 540 (576)
++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 77777776666677777777777777777777777777777777777777777766553
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1.3e-15 Score=135.56 Aligned_cols=133 Identities=21% Similarity=0.167 Sum_probs=90.4
Q ss_pred CCCCCEEEccCCCCC-cCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEE
Q 048827 137 LTRLTQLILEDNSLE-GSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSL 215 (576)
Q Consensus 137 l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 215 (576)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366777777777776 56666667777777777777777643 566777777777777777776566666667777777
Q ss_pred EcccCCCcccC-CccccCCCCCCEEEccCCcccccCc---hhhcCCCCCCeEEeecccCc
Q 048827 216 DFSFNLLSGFI-PDALVRSQNLTYIDLSNNQFSGKFP---ISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 216 ~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~L~~~~~~ 271 (576)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++.+|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777776432 2566677777777777777764433 35666777777777776654
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=2.5e-15 Score=136.79 Aligned_cols=130 Identities=25% Similarity=0.404 Sum_probs=76.0
Q ss_pred CEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCc-cccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEcc
Q 048827 116 EVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPP-GLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLG 194 (576)
Q Consensus 116 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 194 (576)
+++++++ +.+ +.+|..+. .+|++|++++|.+++..+. .++++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 11 ~~l~~s~-~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTG-RGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTT-SCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 5566665 444 24454442 2666666666666543332 25666666666666666665555666666666666666
Q ss_pred CCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCccccc
Q 048827 195 KNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGK 249 (576)
Q Consensus 195 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 249 (576)
+|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 6666655555566666666666666666655555566666666666666655533
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=9e-19 Score=186.03 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=104.5
Q ss_pred CcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCC
Q 048827 428 FLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSV 507 (576)
Q Consensus 428 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~ 507 (576)
.|+.|++++|.+++ +|.+..+++|+.|++++|+++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 38999999999986 566888999999999999999 789999999999999999999995 77 899999999999999
Q ss_pred CcCcccc-cccccCCCCCCEEEccCCcceecCCCCC----CCCCCCccc
Q 048827 508 NSLTGKI-PTSLLGIRGLRHANFRANRLCGEIPQGR----PYSIFPGSA 551 (576)
Q Consensus 508 n~l~~~~-p~~l~~l~~L~~L~l~~n~l~g~iP~~~----~~~~l~~~~ 551 (576)
|++++.. |..+..+++|+.|++++|++++.+|... .+++++.++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 9999776 9999999999999999999997766542 245555543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.4e-15 Score=132.36 Aligned_cols=127 Identities=22% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCCCEEEccCCCCC-cCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEE
Q 048827 138 TRLTQLILEDNSLE-GSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLD 216 (576)
Q Consensus 138 ~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 216 (576)
++|++|++++|.++ +.+|..++.+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 45566666666666666666666533 4566666666666666666655555555666666666
Q ss_pred cccCCCccc-CCccccCCCCCCEEEccCCcccccCc---hhhcCCCCCCeEEee
Q 048827 217 FSFNLLSGF-IPDALVRSQNLTYIDLSNNQFSGKFP---ISICGLANLQDLSLS 266 (576)
Q Consensus 217 l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~L~ 266 (576)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23555666666666666666654433 345555666665543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=4.2e-15 Score=132.21 Aligned_cols=138 Identities=18% Similarity=0.186 Sum_probs=111.3
Q ss_pred CCCCCEEEccCCcCc-cccchhhhhhccCCcCEEEccCCcCcccCCCCCCCCCCcEEEccCCcCCccChhhhhcCccCCe
Q 048827 400 PDGLASIDLHSNQIT-GSLSSIINNRTSSFLEALDVSGNHFSGEIPEFTEGLSLKVLNIGSNKITGHIPSSISNLIELEM 478 (576)
Q Consensus 400 ~~~L~~L~ls~n~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 478 (576)
+++|++|++++|.+. +.+|..+..... |++|++++|.+.+. +.+..+++|++|++++|++++.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~--L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVN--LEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGG--CCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCC--CCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 466777777777766 555555554444 88888888888765 66888999999999999999878888888999999
Q ss_pred eeCccCcCCcc-CcccccCCCCCCEEeCCCCcCccccc---ccccCCCCCCEEEccCCcceecCCCC
Q 048827 479 LDIQRNQIAGT-IPTSLGLLSKLQWLDVSVNSLTGKIP---TSLLGIRGLRHANFRANRLCGEIPQG 541 (576)
Q Consensus 479 L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~g~iP~~ 541 (576)
|++++|.+.+. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+. .+|.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999999853 22788899999999999999996544 47889999999999999987 66654
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.2e-15 Score=130.11 Aligned_cols=128 Identities=21% Similarity=0.182 Sum_probs=102.0
Q ss_pred CCCCCEEEccCCcCC-CCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEE
Q 048827 161 LSLLQTLSLGGNRLK-GPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYI 239 (576)
Q Consensus 161 l~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 239 (576)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467889999999887 67787888888899999988888755 677888888888888888887777777778888888
Q ss_pred EccCCccccc-CchhhcCCCCCCeEEeecccCcCCCh---hhhcCCCCCcEEEcc
Q 048827 240 DLSNNQFSGK-FPISICGLANLQDLSLSHNQLTGTIP---EQIGGLRSLNSLKLS 290 (576)
Q Consensus 240 ~l~~n~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~---~~l~~l~~L~~L~L~ 290 (576)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888753 33677888888888888888875544 467777888887765
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=130.18 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=73.3
Q ss_pred CEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccC
Q 048827 116 EVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGK 195 (576)
Q Consensus 116 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 195 (576)
+++++++ +.++ .+|..+ .++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 13 ~~l~~~~-~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSN-KGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTT-SCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4555555 3333 344433 245666666666665 5555666666666666666666655555566666666666666
Q ss_pred CcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCccc
Q 048827 196 NSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFS 247 (576)
Q Consensus 196 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 247 (576)
|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666555555666666666666666665444444555556666666555553
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=5e-14 Score=126.36 Aligned_cols=111 Identities=21% Similarity=0.177 Sum_probs=50.8
Q ss_pred CCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEc
Q 048827 162 SLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDL 241 (576)
Q Consensus 162 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 241 (576)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34444444444444333333444444444444444444333333444444444444444444443344444455555555
Q ss_pred cCCcccccCchhhcCCCCCCeEEeecccCcC
Q 048827 242 SNNQFSGKFPISICGLANLQDLSLSHNQLTG 272 (576)
Q Consensus 242 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 272 (576)
++|.+++..+..+..+++|++|++++|.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5555443333333444555555555555443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.7e-14 Score=128.25 Aligned_cols=127 Identities=25% Similarity=0.365 Sum_probs=76.4
Q ss_pred CEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccC
Q 048827 141 TQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFN 220 (576)
Q Consensus 141 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 220 (576)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666655 4554442 45666666666665 45556666666666666666666555555666666666666666
Q ss_pred CCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCc
Q 048827 221 LLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~ 271 (576)
.+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666555555666666666666666666444444556666666666666554
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=8.8e-16 Score=168.22 Aligned_cols=180 Identities=20% Similarity=0.210 Sum_probs=105.7
Q ss_pred CCCCEEecCCCCCCccCCcccccCCCCCCEEE-----ccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCC
Q 048827 113 HFLEVMVISGMKHITGPIPESLSNLTRLTQLI-----LEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRN 187 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~-----l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~ 187 (576)
+.++.|+|.+ +.+.. .+..+.....|+.+. +..|.+. ..+..+..+++|++|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~-n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeC-CCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 4567777766 44433 333333333333333 2233333 45667888888888888888887 67777778888
Q ss_pred CcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeec
Q 048827 188 LLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSH 267 (576)
Q Consensus 188 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~ 267 (576)
|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..|..+++|++|++++|.++ .+|..|+.+++|++|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 888888888888 77888888888888888888888 67888888888888888888887 6777788888888888888
Q ss_pred ccCcCCChhhhcCCCC-CcEEEccCCcCccccC
Q 048827 268 NQLTGTIPEQIGGLRS-LNSLKLSEMDSQIRLP 299 (576)
Q Consensus 268 ~~~~~~~~~~l~~l~~-L~~L~L~~~~~~~~~~ 299 (576)
|.+++.+|..+..+.. ...+++++|.+.+.+|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 8888777776654321 1235566666554443
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=5.7e-15 Score=146.70 Aligned_cols=260 Identities=15% Similarity=0.131 Sum_probs=130.0
Q ss_pred CCCCCEEecCCCCCCccCCcccccC-CCCCCEEEccCCCCC--cCCCccccCCCCCCEEEccCCcCCCCCCccCCC----
Q 048827 112 LHFLEVMVISGMKHITGPIPESLSN-LTRLTQLILEDNSLE--GSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGN---- 184 (576)
Q Consensus 112 l~~L~~L~L~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~---- 184 (576)
+.+++.|.+++ + +...-...+.. +++|++|||++|.+. ...+ +.++.++.+.+..+.+. +.+|.+
T Consensus 24 ~~~l~~L~l~g-~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTG-K-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEE-E-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETT
T ss_pred hCceeEEEEec-c-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhcccccc
Confidence 56777777775 2 11111122333 677888888887766 1111 11222333333333221 233444
Q ss_pred ----CCCCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcc----cccCchhhcC
Q 048827 185 ----LRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQF----SGKFPISICG 256 (576)
Q Consensus 185 ----l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~ 256 (576)
+++|+.|++.+ .++...+..|.++++|+.+++..|.+....+.+|..+.++.++....+.. .......|.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 56666666655 55544445566666666666666655544445555555555444433111 0001111222
Q ss_pred --------------------------CCCCCeEEeecccCcCCChhhh-cCCCCCcEEEccCCcCccccCccccCCCCCC
Q 048827 257 --------------------------LANLQDLSLSHNQLTGTIPEQI-GGLRSLNSLKLSEMDSQIRLPIILGRGIPSL 309 (576)
Q Consensus 257 --------------------------l~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L 309 (576)
..+++.+.+.++-.. .....+ ..+++|+.+++++|.+. .++...+.++++|
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L 252 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYL 252 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCC
Confidence 334455555443221 111112 24788999999987755 4455578888899
Q ss_pred CEEECcCCCCCCCCCCCcCCCCCcc-EEEccCCcCccCC-CCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEE
Q 048827 310 LSIDLSYNNLSLGTVPNWIKDRPLS-NVNLAGCKLRGAL-PKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIK 384 (576)
Q Consensus 310 ~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 384 (576)
+++++.+| +....-..+..+.+|+ .+++.+ .+.... ..|.++++|+.++++++.++.+.+..|.++++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 99988886 4412222233333555 555554 332222 2244455555555555555555555555555555554
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=6.9e-14 Score=125.47 Aligned_cols=132 Identities=18% Similarity=0.191 Sum_probs=102.1
Q ss_pred CCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeC
Q 048827 403 LASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDI 481 (576)
Q Consensus 403 L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 481 (576)
.+.++++++.+........ +.|++|++++|.+.+..+. +..+++|++|++++|++++..+..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~-----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC-----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCCCCCC-----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3556666666554332211 2388888888888765555 678889999999999998777777888999999999
Q ss_pred ccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcceecCC
Q 048827 482 QRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLCGEIP 539 (576)
Q Consensus 482 s~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP 539 (576)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999987666778889999999999999986555556889999999999999987766
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=3.7e-14 Score=140.81 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=61.9
Q ss_pred cCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCC-eeeCccCcCCccCcccccCCCCCCEEeCC
Q 048827 429 LEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELE-MLDIQRNQIAGTIPTSLGLLSKLQWLDVS 506 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~ 506 (576)
|+.+++++|.+....+. |.++.+|+.+++.+| +....+.+|.++++|+ .+++.+ .+....+..|..|++|+.++++
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 66666666666533333 666667777777665 5555556666677776 677766 5554445666667777777766
Q ss_pred CCcCcccccccccCCCCCCEEE
Q 048827 507 VNSLTGKIPTSLLGIRGLRHAN 528 (576)
Q Consensus 507 ~n~l~~~~p~~l~~l~~L~~L~ 528 (576)
.|++....+.+|.++++|+.++
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCccchhhhcCCcchhhhc
Confidence 6666654455666666666665
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=7.8e-14 Score=124.97 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=84.9
Q ss_pred ccCCCCCCEEEccCCCCCcCCCccccCCC-CCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCC
Q 048827 134 LSNLTRLTQLILEDNSLEGSIPPGLGHLS-LLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSL 212 (576)
Q Consensus 134 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 212 (576)
+..+.+|++|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445667777777777776 4443 44433 777777777777643 456677777777777777765444445677777
Q ss_pred CEEEcccCCCcccCCc--cccCCCCCCEEEccCCcccccCchh----hcCCCCCCeEEeecccCc
Q 048827 213 QSLDFSFNLLSGFIPD--ALVRSQNLTYIDLSNNQFSGKFPIS----ICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 213 ~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~L~~~~~~ 271 (576)
++|++++|.++ .+|. .+..+++|++|++++|+++ ..|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777765 3343 5666777777777777776 34443 666677777776666543
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=3.8e-12 Score=129.21 Aligned_cols=266 Identities=12% Similarity=0.150 Sum_probs=160.4
Q ss_pred CCCCCCEEecCCCCCCccCCcccccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcE
Q 048827 111 NLHFLEVMVISGMKHITGPIPESLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLV 190 (576)
Q Consensus 111 ~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 190 (576)
.+..++.+.+.. .++..-..+|.++ +|+.+.+..+ ++..-...|.++ +|+.+.+.. .+...-+.+|.+|++|+.
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 346666776663 3333334566664 6777777655 553444456663 577777775 455455566777777888
Q ss_pred EEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccC
Q 048827 191 INLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQL 270 (576)
Q Consensus 191 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~ 270 (576)
+++..|.++......|. ..+|+.+.+..+ ++.....+|..+++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88777777655455555 467777777643 55455566777777777777654 44344445555 677777773 334
Q ss_pred cCCChhhhcCCCCCcEEEccCCcCc----cccCccccCCCCCCCEEECcCCCCCCCCCCCcCCCCCccEEEccCCcCccC
Q 048827 271 TGTIPEQIGGLRSLNSLKLSEMDSQ----IRLPIILGRGIPSLLSIDLSYNNLSLGTVPNWIKDRPLSNVNLAGCKLRGA 346 (576)
Q Consensus 271 ~~~~~~~l~~l~~L~~L~L~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 346 (576)
......+|..+++|+.+.+.++... ..++...+.+|++|+.+.+.. .+. .+ .
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~--~I---------------------~ 315 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR--IL---------------------G 315 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC--EE---------------------C
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE--EE---------------------h
Confidence 4344566677777777777665432 123333555566666665552 222 01 1
Q ss_pred CCCCCCCCCccEEEccCCcCCCccchhhhCCCCCCeEEccCCcceeeCCC-CCCC-CCCCEEEccCCcC
Q 048827 347 LPKFTRPDSLSSIDLSNNLLTDGISSFFTNMSSLQNIKLSNNQLKFDVSE-IRFP-DGLASIDLHSNQI 413 (576)
Q Consensus 347 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~-~~L~~L~ls~n~~ 413 (576)
...|.++++|+.+.|..+ ++.+...+|.++ +|+.+++.+|........ +..+ ..++.|++..+.+
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 123555677777777543 666566677777 888888888766543333 4444 4677887776543
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=2e-12 Score=131.59 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=26.5
Q ss_pred CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCC
Q 048827 446 FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVS 506 (576)
Q Consensus 446 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~ 506 (576)
+.++.+|+.++|.++ ++.....+|.+|++|+.+++..+ +.......|..|++|+.+++.
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 444445555555422 33333344555555555555433 332333444455555555543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.7e-13 Score=122.76 Aligned_cols=134 Identities=18% Similarity=0.172 Sum_probs=108.4
Q ss_pred cccCCCCCCEEEccCCcCCCCCCccCCCCC-CCcEEEccCCcccccCcccccCCCCCCEEEcccCCCcccCCccccCCCC
Q 048827 157 GLGHLSLLQTLSLGGNRLKGPIPPSLGNLR-NLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNLLSGFIPDALVRSQN 235 (576)
Q Consensus 157 ~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 235 (576)
.+.++.+|++|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4667889999999999998 4554 55544 999999999999865 67888999999999999998665566688999
Q ss_pred CCEEEccCCcccccCch--hhcCCCCCCeEEeecccCcCCChh----hhcCCCCCcEEEccCCcCcc
Q 048827 236 LTYIDLSNNQFSGKFPI--SICGLANLQDLSLSHNQLTGTIPE----QIGGLRSLNSLKLSEMDSQI 296 (576)
Q Consensus 236 L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~----~l~~l~~L~~L~L~~~~~~~ 296 (576)
|++|++++|.++ .+|. .+..+++|++|++++|.+. ..|. .+..+++|+.|+++.|....
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999986 5555 7888999999999999987 4454 37788888888888876543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=5.5e-16 Score=141.99 Aligned_cols=110 Identities=25% Similarity=0.303 Sum_probs=54.1
Q ss_pred cccCCCCCCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCC
Q 048827 133 SLSNLTRLTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSL 212 (576)
Q Consensus 133 ~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 212 (576)
.+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 55555555555555555552 44 4555555555555555555 344444444555555555555543 22 34444555
Q ss_pred CEEEcccCCCcccCC-ccccCCCCCCEEEccCCccc
Q 048827 213 QSLDFSFNLLSGFIP-DALVRSQNLTYIDLSNNQFS 247 (576)
Q Consensus 213 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~ 247 (576)
++|++++|.+++..+ ..+..+++|++|++++|+++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 555555554443211 23444444555555544444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.2e-15 Score=139.82 Aligned_cols=149 Identities=27% Similarity=0.362 Sum_probs=109.8
Q ss_pred cCCCCCCEEEccCCCCCcCCCc------cccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccC
Q 048827 135 SNLTRLTQLILEDNSLEGSIPP------GLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFIS 208 (576)
Q Consensus 135 ~~l~~L~~L~l~~~~~~~~~p~------~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 208 (576)
.....++.++++.+.+.+.+|. .++.+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445556666666666655554 78888999999999998884 66 7888888999999988887 56777777
Q ss_pred CCCCCEEEcccCCCcccCCccccCCCCCCEEEccCCcccccCc-hhhcCCCCCCeEEeecccCcCCChh----------h
Q 048827 209 FLSLQSLDFSFNLLSGFIPDALVRSQNLTYIDLSNNQFSGKFP-ISICGLANLQDLSLSHNQLTGTIPE----------Q 277 (576)
Q Consensus 209 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~----------~ 277 (576)
+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 7888888888888875 33 57778888888888888874322 4677888888888888887655443 2
Q ss_pred hcCCCCCcEEE
Q 048827 278 IGGLRSLNSLK 288 (576)
Q Consensus 278 l~~l~~L~~L~ 288 (576)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 55667777665
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.40 E-value=2.2e-11 Score=123.89 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=38.7
Q ss_pred CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEE
Q 048827 446 FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWL 503 (576)
Q Consensus 446 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 503 (576)
|.++.+|+.+.+..+ ++.....+|.+|++|+.+++..+- . .+...|.++++|+.+
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 677788888888765 555556778888888888887552 2 344567777777664
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=4.9e-11 Score=121.01 Aligned_cols=82 Identities=12% Similarity=0.012 Sum_probs=46.4
Q ss_pred CCCCCEEEccCCcccccCchhhcCCCCCCeEEeecccCcCCChhhhcCCCCCcEEEccCCcCccccCccccCCCCCCCEE
Q 048827 233 SQNLTYIDLSNNQFSGKFPISICGLANLQDLSLSHNQLTGTIPEQIGGLRSLNSLKLSEMDSQIRLPIILGRGIPSLLSI 312 (576)
Q Consensus 233 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 312 (576)
+..++.+.+..+ ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. . ...+....+.+|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-T-LEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-T-CCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-C-ccEehHHHhhCcccCCee
Confidence 456666666543 343444556654 6777777655 443445556653 577777764 2 223333355666666666
Q ss_pred ECcCCCCC
Q 048827 313 DLSYNNLS 320 (576)
Q Consensus 313 ~l~~~~l~ 320 (576)
++..|.++
T Consensus 186 ~l~~n~l~ 193 (401)
T 4fdw_A 186 DLSKTKIT 193 (401)
T ss_dssp ECTTSCCS
T ss_pred ecCCCcce
Confidence 66665554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=3.9e-12 Score=113.00 Aligned_cols=106 Identities=25% Similarity=0.257 Sum_probs=68.4
Q ss_pred CCEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEccc
Q 048827 140 LTQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSF 219 (576)
Q Consensus 140 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 219 (576)
.++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356666666666 4555442 5666777777766655566666666777777777666655555566666677777777
Q ss_pred CCCcccCCccccCCCCCCEEEccCCcccc
Q 048827 220 NLLSGFIPDALVRSQNLTYIDLSNNQFSG 248 (576)
Q Consensus 220 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 248 (576)
|.+++..+..|..+++|++|++++|+++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66665555556666677777777766653
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=4.2e-12 Score=112.79 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=82.0
Q ss_pred cCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCC
Q 048827 429 LEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSV 507 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~ 507 (576)
.+.+++++|.+.. +|. + .++|+.|+|++|++++..|..|..+++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5667777777764 443 3 26788888888888877777888888888888888888866666677888888888888
Q ss_pred CcCcccccccccCCCCCCEEEccCCcceecCC
Q 048827 508 NSLTGKIPTSLLGIRGLRHANFRANRLCGEIP 539 (576)
Q Consensus 508 n~l~~~~p~~l~~l~~L~~L~l~~n~l~g~iP 539 (576)
|++++..+..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88886555668888888888888888874443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=6e-12 Score=112.17 Aligned_cols=104 Identities=26% Similarity=0.291 Sum_probs=68.0
Q ss_pred CEEEccCCCCCcCCCccccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccC
Q 048827 141 TQLILEDNSLEGSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFN 220 (576)
Q Consensus 141 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 220 (576)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56666666665 5565553 66777777777776555666666777777777777666554445566677777777777
Q ss_pred CCcccCCccccCCCCCCEEEccCCccc
Q 048827 221 LLSGFIPDALVRSQNLTYIDLSNNQFS 247 (576)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~l~~n~~~ 247 (576)
.+++..+..|..+++|++|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666554445666677777777777665
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.4e-11 Score=109.76 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=77.6
Q ss_pred cCEEEccCCcCcccCCC-CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCC
Q 048827 429 LEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSV 507 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~ 507 (576)
-+.++++++.+. .+|. +. ++|+.|++++|++++..|..|..+++|++|+|++|.+.+..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 356777777765 3444 32 6788888888888877777888888888888888888855455567788888888888
Q ss_pred CcCcccccccccCCCCCCEEEccCCccee
Q 048827 508 NSLTGKIPTSLLGIRGLRHANFRANRLCG 536 (576)
Q Consensus 508 n~l~~~~p~~l~~l~~L~~L~l~~n~l~g 536 (576)
|++++..+..+..+++|++|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88885444557788888888888888773
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=3.6e-13 Score=135.40 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=69.3
Q ss_pred CCccEEEccCCcCCCccchhhhC-----CCCCCeEEccCCcceeeCCC--CCCCCCCCEEEccCCcCccccchhhhhh--
Q 048827 354 DSLSSIDLSNNLLTDGISSFFTN-----MSSLQNIKLSNNQLKFDVSE--IRFPDGLASIDLHSNQITGSLSSIINNR-- 424 (576)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~~-- 424 (576)
+.|++|++++|.++......+.. .++|++|+|++|.+...... ...+++|++|++++|.++......+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45556666666655433332221 13555555555554321110 1122345555555555543333222211
Q ss_pred -ccCCcCEEEccCCcCcccCC----C-CCCCCCCcEEEccCCcCCcc----ChhhhhcCccCCeeeCccCcCCcc----C
Q 048827 425 -TSSFLEALDVSGNHFSGEIP----E-FTEGLSLKVLNIGSNKITGH----IPSSISNLIELEMLDIQRNQIAGT----I 490 (576)
Q Consensus 425 -~~~~L~~L~l~~n~~~~~~~----~-~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~----~ 490 (576)
..+.|++|++++|.+++... . +...++|++|+|++|.+++. ++..+...++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 11225555555554433111 1 23344555555555555432 133344445555555555555432 2
Q ss_pred cccccCCCCCCEEeCCCCcCcc
Q 048827 491 PTSLGLLSKLQWLDVSVNSLTG 512 (576)
Q Consensus 491 p~~l~~l~~L~~L~L~~n~l~~ 512 (576)
+..+...++|++|+|++|++++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2233344555555555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=7e-13 Score=133.27 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=76.3
Q ss_pred CCCCEEecCCCCCCccCCcccc----c-CCCCCCEEEccCCCCCcCCCccc-cCCCCCCEEEccCCcCCCCCCccC----
Q 048827 113 HFLEVMVISGMKHITGPIPESL----S-NLTRLTQLILEDNSLEGSIPPGL-GHLSLLQTLSLGGNRLKGPIPPSL---- 182 (576)
Q Consensus 113 ~~L~~L~L~~~~~~~~~~~~~l----~-~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~L~~~~~~~~~p~~l---- 182 (576)
++|++|++++ +.++......+ . ..++|++|++++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4566666665 33433222222 2 12466666666666543222222 123456666666665543222222
Q ss_pred -CCCCCCcEEEccCCccccc----CcccccCCCCCCEEEcccCCCcccC----CccccCCCCCCEEEccCCcccccC---
Q 048827 183 -GNLRNLLVINLGKNSVSGP----IPPTFISFLSLQSLDFSFNLLSGFI----PDALVRSQNLTYIDLSNNQFSGKF--- 250 (576)
Q Consensus 183 -~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~--- 250 (576)
...++|++|++++|.++.. ++..+..+++|++|++++|.+++.. +..+...++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2345566666666655432 2233345555666666666554321 334445555666666666555322
Q ss_pred -chhhcCCCCCCeEEeecccCcCC
Q 048827 251 -PISICGLANLQDLSLSHNQLTGT 273 (576)
Q Consensus 251 -~~~l~~l~~L~~L~L~~~~~~~~ 273 (576)
+..+...++|++|+|++|.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 22233345555555555555433
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=7.1e-09 Score=105.31 Aligned_cols=131 Identities=19% Similarity=0.285 Sum_probs=64.7
Q ss_pred chhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC--CCC
Q 048827 371 SSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE--FTE 448 (576)
Q Consensus 371 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~ 448 (576)
...|.++..|+.+.+.++...-....+..++.|+.+.+... +. .++. |.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~---------------------------~I~~~aF~~ 309 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-IT---------------------------ELPESVFAG 309 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC---------------------------EECTTTTTT
T ss_pred cceeeecccccEEecccccceecCcccccccccccccCCCc-cc---------------------------ccCceeecC
Confidence 34556666666666655443322333555555555555321 11 1111 555
Q ss_pred CCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEE
Q 048827 449 GLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHAN 528 (576)
Q Consensus 449 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 528 (576)
+.+|+.+.|.++ ++.....+|.+|.+|+.+.|..+ ++......|.+|++|+.+++.++.... ..+..+..|+.+.
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 666666666543 44344456666777777777543 443334566677777777776654331 3455566677666
Q ss_pred ccCCcc
Q 048827 529 FRANRL 534 (576)
Q Consensus 529 l~~n~l 534 (576)
+..|.+
T Consensus 385 i~~~~~ 390 (394)
T 4gt6_A 385 VAPGSI 390 (394)
T ss_dssp ------
T ss_pred eCCCCE
Confidence 655543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=5.7e-09 Score=106.02 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCC
Q 048827 446 FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLR 525 (576)
Q Consensus 446 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 525 (576)
+.++++|+.+.+. +.++.....+|.+|.+|+.++|.++ ++......|..|++|+++.+..+ ++.....+|.++++|+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 7788899999996 4565566678999999999999865 55455678999999999999654 6644557899999999
Q ss_pred EEEccCCcceecCCCCCCCCCCCcccccC
Q 048827 526 HANFRANRLCGEIPQGRPYSIFPGSAYAH 554 (576)
Q Consensus 526 ~L~l~~n~l~g~iP~~~~~~~l~~~~~~~ 554 (576)
.+++.++..... ......+|+.+.+..
T Consensus 361 ~i~~~~~~~~~~--~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 361 NIEYSGSRSQWN--AISTDSGLQNLPVAP 387 (394)
T ss_dssp EEEESSCHHHHH--TCBCCCCC-------
T ss_pred EEEECCceeehh--hhhccCCCCEEEeCC
Confidence 999999865421 123345556555543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=3.4e-10 Score=113.09 Aligned_cols=102 Identities=23% Similarity=0.211 Sum_probs=54.6
Q ss_pred EEccCC-CCCcCCCccccCCCCCCEEEccC-CcCCCCCCccCCCCCCCcEEEccCCcccccCcccccCCCCCCEEEcccC
Q 048827 143 LILEDN-SLEGSIPPGLGHLSLLQTLSLGG-NRLKGPIPPSLGNLRNLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFN 220 (576)
Q Consensus 143 L~l~~~-~~~~~~p~~l~~l~~L~~L~L~~-~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 220 (576)
++++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 355554 454 3555 55555555555553 5555444445555555555555555555555555555555555555555
Q ss_pred CCcccCCccccCCCCCCEEEccCCccc
Q 048827 221 LLSGFIPDALVRSQNLTYIDLSNNQFS 247 (576)
Q Consensus 221 ~l~~~~~~~l~~l~~L~~L~l~~n~~~ 247 (576)
.+++..+..+..++ |++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55544334443333 555555555554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=7.6e-10 Score=110.47 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=44.9
Q ss_pred CCCCCCCcEEEccC-CcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCC
Q 048827 446 FTEGLSLKVLNIGS-NKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGL 524 (576)
Q Consensus 446 ~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 524 (576)
+..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|..+++|++|+|++|++++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44444555555553 555544445555555555555555555554444555555555555555555533233333333 5
Q ss_pred CEEEccCCcce
Q 048827 525 RHANFRANRLC 535 (576)
Q Consensus 525 ~~L~l~~n~l~ 535 (576)
+.|++.+|++.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 55555555544
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=3.5e-10 Score=112.62 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCCCcCCCC--ceeeecCccccCCCCCCEEecCCCCC----C----ccCCcccccCCCCCCEEEccCCCCC
Q 048827 82 TGRVTGLALQRPDRELGM--YMIGTLPAALGNLHFLEVMVISGMKH----I----TGPIPESLSNLTRLTQLILEDNSLE 151 (576)
Q Consensus 82 ~~~v~~l~l~~~~~~~~~--~~~~~~~~~l~~l~~L~~L~L~~~~~----~----~~~~~~~l~~l~~L~~L~l~~~~~~ 151 (576)
..+|+.|.+..+..+... .....+..++..+++|+.|.+..... + .+.+...+..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 446777777655411000 01112334455677888887754211 1 1123344556677777777665311
Q ss_pred cCCCccccCCCCCCEEEccCCcCCCCCCccCC--CCCCCcEEEccCC--ccccc-----Ccccc--cCCCCCCEEEcccC
Q 048827 152 GSIPPGLGHLSLLQTLSLGGNRLKGPIPPSLG--NLRNLLVINLGKN--SVSGP-----IPPTF--ISFLSLQSLDFSFN 220 (576)
Q Consensus 152 ~~~p~~l~~l~~L~~L~L~~~~~~~~~p~~l~--~l~~L~~L~l~~n--~~~~~-----~~~~l--~~l~~L~~L~l~~n 220 (576)
.++. +. +++|++|++..+.+.......+. .+++|++|+|+.+ ...+. +...+ ..+++|++|++.+|
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2232 32 56677777766655432222222 4666666666421 11100 00111 13455555555555
Q ss_pred CCcccCCcccc---CCCCCCEEEccCCcccccCch----hhcCCCCCCeEEeecccCc
Q 048827 221 LLSGFIPDALV---RSQNLTYIDLSNNQFSGKFPI----SICGLANLQDLSLSHNQLT 271 (576)
Q Consensus 221 ~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~L~~~~~~ 271 (576)
.+.+..+..+. .+++|++|+++.|.+.+..+. .+..+++|+.|++++|.++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 55432222221 344555555555555443221 2223455555555555444
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=4.6e-09 Score=104.50 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=107.4
Q ss_pred cchhhhCCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCC--cCccc-----
Q 048827 370 ISSFFTNMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGN--HFSGE----- 442 (576)
Q Consensus 370 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~----- 442 (576)
+...+..+|+|+.|++++|.-. ..+.+ ..++|++|++..|.+.......+.....+.|+.|+|+.+ ...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 4456677889999999887311 12233 378899999998887755544444333355999988532 21111
Q ss_pred C-CCC--CCCCCCcEEEccCCcCCccChhhhh---cCccCCeeeCccCcCCcc----CcccccCCCCCCEEeCCCCcCcc
Q 048827 443 I-PEF--TEGLSLKVLNIGSNKITGHIPSSIS---NLIELEMLDIQRNQIAGT----IPTSLGLLSKLQWLDVSVNSLTG 512 (576)
Q Consensus 443 ~-~~~--~~~~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~ 512 (576)
+ +.+ ..+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|++|++++|.+++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1 112 3578999999999988765444443 478899999999998864 34444567899999999998886
Q ss_pred cccccccC-CCCCCEEEccCCc
Q 048827 513 KIPTSLLG-IRGLRHANFRANR 533 (576)
Q Consensus 513 ~~p~~l~~-l~~L~~L~l~~n~ 533 (576)
..-..+.. + ...+++++++
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 54444443 2 4568888876
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=6.4e-07 Score=90.27 Aligned_cols=150 Identities=12% Similarity=0.091 Sum_probs=82.7
Q ss_pred CCCCCCeEEccCCcceeeCCCCCCCCCCCEEEccCCcCccccchhhhhhccCCcCEEEccCCcCcccCCC-CCCCCCCcE
Q 048827 376 NMSSLQNIKLSNNQLKFDVSEIRFPDGLASIDLHSNQITGSLSSIINNRTSSFLEALDVSGNHFSGEIPE-FTEGLSLKV 454 (576)
Q Consensus 376 ~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~ 454 (576)
....+..+.+...........+..+..|+.+.+..+ +.......+..... |+.+.+..+ +...... +.++.+|+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~--L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKA--LDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSS--CCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCcc--ceEEEcCCC-ccEeCccccceeehhcc
Confidence 344444444444333322333555556666665443 11111222222222 666666544 2222222 666777777
Q ss_pred EEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccC
Q 048827 455 LNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRA 531 (576)
Q Consensus 455 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 531 (576)
+.+..+ +.......|.++++|+.+.+.++.+.......|.++++|+.++|..+ ++.....+|.++++|+.+.+..
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 777543 44344556777778888887777776555567777778888877543 4433345677777777776644
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=1.2e-06 Score=88.33 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=49.6
Q ss_pred CCCCCCCcEEEccCCcCCccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCcccccccccCCC
Q 048827 446 FTEGLSLKVLNIGSNKITGHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIR 522 (576)
Q Consensus 446 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 522 (576)
+..+.+|+.+.+.++.++.....+|.+|.+|+.++|..+ +.......|.+|++|+.+.+..+ ++.....+|.++.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 666777777777777776566677778888888888644 44344466777888888777544 4433344565554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=4.5e-08 Score=87.80 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCCCCCcEEEccCCcCCcc----ChhhhhcCccCCeeeCccCcCCcc----CcccccCCCCCCEEeC--CCCcCccc--
Q 048827 446 FTEGLSLKVLNIGSNKITGH----IPSSISNLIELEMLDIQRNQIAGT----IPTSLGLLSKLQWLDV--SVNSLTGK-- 513 (576)
Q Consensus 446 ~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L--~~n~l~~~-- 513 (576)
+...++|++|+|++|++... +.+.+...++|++|+|++|.+.+. +.+.+...++|++|+| ++|.+...
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 34456777888888877643 344556667888888888888753 4566777788888888 77888864
Q ss_pred --ccccccCCCCCCEEEccCCcce
Q 048827 514 --IPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 514 --~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
+...+...++|++|++++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445666788888988888875
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=9e-08 Score=85.79 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=21.3
Q ss_pred ccccCCCCCCEEEccCC-CCCcC----CCccccCCCCCCEEEccCCcCC
Q 048827 132 ESLSNLTRLTQLILEDN-SLEGS----IPPGLGHLSLLQTLSLGGNRLK 175 (576)
Q Consensus 132 ~~l~~l~~L~~L~l~~~-~~~~~----~p~~l~~l~~L~~L~L~~~~~~ 175 (576)
..+...++|++|++++| .+... +...+...++|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34445566666666665 55421 2222333445555555555443
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=3.9e-07 Score=79.57 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=37.6
Q ss_pred cCEEEccCCcCcccCCC-CCCCCCCcEEEccCCc-CCccChhhhhcC----ccCCeeeCccCc-CCccCcccccCCCCCC
Q 048827 429 LEALDVSGNHFSGEIPE-FTEGLSLKVLNIGSNK-ITGHIPSSISNL----IELEMLDIQRNQ-IAGTIPTSLGLLSKLQ 501 (576)
Q Consensus 429 L~~L~l~~n~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-~~~~~p~~l~~l~~L~ 501 (576)
|+.|++++|.++..... +..+++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 55555555554433222 4445555555555553 443333333332 245555555543 4443334444455555
Q ss_pred EEeCCCCc
Q 048827 502 WLDVSVNS 509 (576)
Q Consensus 502 ~L~L~~n~ 509 (576)
+|++++|+
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 55555553
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=8.4e-07 Score=77.50 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=40.6
Q ss_pred CCcEEEccCCcccccCcccccCCCCCCEEEcccCC-CcccCCccccCC----CCCCEEEccCCc-ccccCchhhcCCCCC
Q 048827 187 NLLVINLGKNSVSGPIPPTFISFLSLQSLDFSFNL-LSGFIPDALVRS----QNLTYIDLSNNQ-FSGKFPISICGLANL 260 (576)
Q Consensus 187 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~l~~l~~L 260 (576)
+|++||+++|.++...-..+..+++|++|+|++|. +++.....+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44455555544444433444455555555555552 443333334332 245555555553 444444445555556
Q ss_pred CeEEeeccc
Q 048827 261 QDLSLSHNQ 269 (576)
Q Consensus 261 ~~L~L~~~~ 269 (576)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666665554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=4.8e-07 Score=85.28 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=39.0
Q ss_pred hcCccCCeeeCccCcCCc--cCcccccCCCCCCEEeCCCCcCccc-ccccccCCCCCCEEEccCCcceecCCC
Q 048827 471 SNLIELEMLDIQRNQIAG--TIPTSLGLLSKLQWLDVSVNSLTGK-IPTSLLGIRGLRHANFRANRLCGEIPQ 540 (576)
Q Consensus 471 ~~l~~L~~L~Ls~n~~~~--~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~g~iP~ 540 (576)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++.+. ....+..+ .|++|++++|++++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCc
Confidence 445666666666666664 3344455666666666666666643 11122222 666666666666666653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=1.8e-06 Score=81.32 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=59.9
Q ss_pred CCCCCcEEEccCCcCCc--cChhhhhcCccCCeeeCccCcCCccCcccccCCC--CCCEEeCCCCcCcccccc-------
Q 048827 448 EGLSLKVLNIGSNKITG--HIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLS--KLQWLDVSVNSLTGKIPT------- 516 (576)
Q Consensus 448 ~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~------- 516 (576)
++++|+.|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45678888888888876 4456777889999999999998854 2334444 899999999999876652
Q ss_pred cccCCCCCCEEE
Q 048827 517 SLLGIRGLRHAN 528 (576)
Q Consensus 517 ~l~~l~~L~~L~ 528 (576)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 366788998886
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=6.3e-05 Score=66.89 Aligned_cols=88 Identities=9% Similarity=0.119 Sum_probs=56.2
Q ss_pred CCCCCCcEEEccCCcCCc----cChhhhhcCccCCeeeCccCcCCcc----CcccccCCCCCCEEeCCCC---cCcc---
Q 048827 447 TEGLSLKVLNIGSNKITG----HIPSSISNLIELEMLDIQRNQIAGT----IPTSLGLLSKLQWLDVSVN---SLTG--- 512 (576)
Q Consensus 447 ~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n---~l~~--- 512 (576)
..-..|+.|+|++|++.+ .+.+.+..-+.|++|+|++|.|.+. +.+.+...+.|++|+|++| .+..
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 344567777777777663 2344555667788888888877653 3345566677888888755 3332
Q ss_pred -cccccccCCCCCCEEEccCCcc
Q 048827 513 -KIPTSLLGIRGLRHANFRANRL 534 (576)
Q Consensus 513 -~~p~~l~~l~~L~~L~l~~n~l 534 (576)
.+.+.+..-+.|+.|+++.|.+
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhCCCcCeEeccCCCc
Confidence 2445566677888888877654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.98 E-value=0.00049 Score=61.15 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=77.6
Q ss_pred CCCCCCcEEEccCC-cCCc----cChhhhhcCccCCeeeCccCcCCcc----CcccccCCCCCCEEeCCCCcCccc----
Q 048827 447 TEGLSLKVLNIGSN-KITG----HIPSSISNLIELEMLDIQRNQIAGT----IPTSLGLLSKLQWLDVSVNSLTGK---- 513 (576)
Q Consensus 447 ~~~~~L~~L~L~~n-~l~~----~~~~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~---- 513 (576)
.+-+.|++|+|+++ ++.. .+.+.+..-+.|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34567888999885 7764 2456677789999999999999864 345556778999999999999973
Q ss_pred ccccccCCCCCCEEEccCCc---ceec----CCCC-CCCCCCCcccccCC
Q 048827 514 IPTSLLGIRGLRHANFRANR---LCGE----IPQG-RPYSIFPGSAYAHN 555 (576)
Q Consensus 514 ~p~~l~~l~~L~~L~l~~n~---l~g~----iP~~-~~~~~l~~~~~~~n 555 (576)
+.+.+..-+.|++|+|++|. +... |-.. ..-.++..+++..|
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 44567777889999999763 2211 1111 23356677777655
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.42 E-value=0.0058 Score=50.52 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=27.1
Q ss_pred EEEccCCcCC-ccChhhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCCCCcCc
Q 048827 454 VLNIGSNKIT-GHIPSSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVSVNSLT 511 (576)
Q Consensus 454 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~ 511 (576)
.++.++++++ ..+|..+ ..+|++|+|++|.++..-+..|..+++|++|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 2333322 224555555555555333344455555555555555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.17 E-value=0.006 Score=50.41 Aligned_cols=57 Identities=26% Similarity=0.327 Sum_probs=46.4
Q ss_pred CeeeCccCcCC-ccCcccccCCCCCCEEeCCCCcCcccccccccCCCCCCEEEccCCcce
Q 048827 477 EMLDIQRNQIA-GTIPTSLGLLSKLQWLDVSVNSLTGKIPTSLLGIRGLRHANFRANRLC 535 (576)
Q Consensus 477 ~~L~Ls~n~~~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 535 (576)
..++.+++.++ ..+|..+. ++|++|+|++|+|+..-+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 46776543 57999999999999655567888999999999999885
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.96 E-value=60 Score=24.56 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=13.9
Q ss_pred ccCCCCCCEEEccCCcCCCCCCccCCCCCCCcEEEcc
Q 048827 158 LGHLSLLQTLSLGGNRLKGPIPPSLGNLRNLLVINLG 194 (576)
Q Consensus 158 l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 194 (576)
|.++.+|+.+.+..+ ++..-..+|.+|.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344444444444332 111223334444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.86 E-value=33 Score=26.08 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=16.4
Q ss_pred hhhhcCccCCeeeCccCcCCccCcccccCCCCCCEEeCC
Q 048827 468 SSISNLIELEMLDIQRNQIAGTIPTSLGLLSKLQWLDVS 506 (576)
Q Consensus 468 ~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~ 506 (576)
.+|.+|++|+.+.|-.+ ++......|..|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444555555544432 221223344444455444443
Done!