BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048828
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 147/315 (46%), Gaps = 36/315 (11%)
Query: 12 LGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFS 71
L L + N+ IP LG L +L+++ N+ SG F R I + L+L+ ++ N+F
Sbjct: 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 72 GSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASN-LERLDLPGNQFKGKVSIDFSSX 130
G +P + L +L+ L + N F G IPD LS A + L LDL GN F G V F S
Sbjct: 261 GPIP---PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 131 XXXXXXXXXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQ 190
D +L LK L L N+F GELP S+ NLS++++
Sbjct: 318 SLLESLALSSNNFSGELPMD-----TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 191 FSIGGNQISG--------------------------TIPPGIRNLVNLVALTMDSNQLHG 224
+ N SG IPP + N LV+L + N L G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 225 TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284
TIP +G L L+ L L+ N L+G IP L + L L L FN+L G IPS L NC NL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 285 ISFRASHNKLTGALP 299
S+N+LTG +P
Sbjct: 493 NWISLSNNRLTGEIP 507
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 141/293 (48%), Gaps = 7/293 (2%)
Query: 9 LSALGILLIRWNSLGGQIPTTL-GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTV 67
L +L L + N G+IP L G L L+++ N F G P + + S LE + L+
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 68 NRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSN-ASNLERLDLPGNQFKGKVSID 126
N FSG LP D L+ + LK L + N F G +P+SL+N +++L LDL N F G + +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 127 FSSXXXXXXXXXXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSS 186
G +L+NCS L SL L N G +P S+ +LS
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 187 TMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFL 246
+ + N + G IP + + L L +D N L G IP + NL + L N L
Sbjct: 444 -LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 247 QGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP 299
G IP +G L LA L LS N+ GNIP+ LG+C++LI + N G +P
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 139/283 (49%), Gaps = 40/283 (14%)
Query: 2 LPDFIGNLSALGILLIRWNSLGGQIP-TTLGLLRNLVYLNVAENQFSGMFPRWICNIS-S 59
+P F G+ S L L + N+ G++P TL +R L L+++ N+FSG P + N+S S
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 60 LELIYLTVNRFSGSLPFDILVNLPN-LKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQ 118
L + L+ N FSG + ++ N N L+EL + N F G IP +LSN S L L L N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 119 FKGKVSIDFSSXXXXXXXXXXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELP 178
G + +SL + S L+ L L+ N GE+P
Sbjct: 430 LSGTIP------------------------------SSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 179 HS---IANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKN 235
+ L + ++ F N ++G IP G+ N NL +++ +N+L G IP IG L+N
Sbjct: 460 QELMYVKTLETLILDF----NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 236 LQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSL 278
L +L L N G+IP LG+ L L L+ N G IP+++
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 18/290 (6%)
Query: 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLE 61
+P +G+LS L L + N L G+IP L ++ L L + N +G P + N ++L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 62 LIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDL------- 114
I L+ NR +G +P + L NL L + N+F G+IP L + +L LDL
Sbjct: 494 WISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 115 --PGNQFK--GKVSIDF-SSXXXXXXXXXXXXXXGMGTANDLDF----VTSLTNCSSLKS 165
P FK GK++ +F + G N L+F L S+
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 166 LSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGT 225
++ +GG + N + +M+ + N +SG IP I ++ L L + N + G+
Sbjct: 613 CNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 226 IPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIP 275
IPD +G+L+ L +L L N L G IP ++ LT L ++ LS NNL G IP
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 154 VTSLTNCSSLKSLSLYDN--QFGGELPH-------SIANLSSTMI--------------- 189
+TSL +CS LK L++ N F G++ + +LS+ I
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 190 ---QFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFL 246
+I GN+ISG + + VNL L + SN IP +G+ LQ L + N L
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 235
Query: 247 QGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP 299
G ++ T+L L +S N G IP ++L + NK TG +P
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 140/297 (47%), Gaps = 35/297 (11%)
Query: 30 LGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELG 89
LG L +L+++ N+ SG F R I + L+L+ ++ N+F G +P + L +L+ L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP---PLPLKSLQYLS 272
Query: 90 VGGNNFVGSIPDSLSNASN-LERLDLPGNQFKGKVSIDFSSXXXXXXXXXXXXXXGMGTA 148
+ N F G IPD LS A + L LDL GN F G V F S
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 149 NDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISG-------- 200
D +L LK L L N+F GELP S+ NLS++++ + N SG
Sbjct: 333 MD-----TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 201 ------------------TIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLF 242
IPP + N LV+L + N L GTIP +G L L+ L L+
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 243 RNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP 299
N L+G IP L + L L L FN+L G IPS L NC NL S+N+LTG +P
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 141/293 (48%), Gaps = 7/293 (2%)
Query: 9 LSALGILLIRWNSLGGQIPTTL-GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTV 67
L +L L + N G+IP L G L L+++ N F G P + + S LE + L+
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 68 NRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSN-ASNLERLDLPGNQFKGKVSID 126
N FSG LP D L+ + LK L + N F G +P+SL+N +++L LDL N F G + +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 127 FSSXXXXXXXXXXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSS 186
G +L+NCS L SL L N G +P S+ +LS
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 187 TMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFL 246
+ + N + G IP + + L L +D N L G IP + NL + L N L
Sbjct: 441 -LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 247 QGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP 299
G IP +G L LA L LS N+ GNIP+ LG+C++LI + N G +P
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 139/283 (49%), Gaps = 40/283 (14%)
Query: 2 LPDFIGNLSALGILLIRWNSLGGQIP-TTLGLLRNLVYLNVAENQFSGMFPRWICNIS-S 59
+P F G+ S L L + N+ G++P TL +R L L+++ N+FSG P + N+S S
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 60 LELIYLTVNRFSGSLPFDILVNLPN-LKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQ 118
L + L+ N FSG + ++ N N L+EL + N F G IP +LSN S L L L N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 119 FKGKVSIDFSSXXXXXXXXXXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELP 178
G + +SL + S L+ L L+ N GE+P
Sbjct: 427 LSGTIP------------------------------SSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 179 HS---IANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKN 235
+ L + ++ F N ++G IP G+ N NL +++ +N+L G IP IG L+N
Sbjct: 457 QELMYVKTLETLILDF----NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 236 LQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSL 278
L +L L N G+IP LG+ L L L+ N G IP+++
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 138/290 (47%), Gaps = 18/290 (6%)
Query: 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLE 61
+P +G+LS L L + N L G+IP L ++ L L + N +G P + N ++L
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 62 LIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDL------- 114
I L+ NR +G +P + L NL L + N+F G+IP L + +L LDL
Sbjct: 491 WISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 115 --PGNQFK--GKVSIDF-SSXXXXXXXXXXXXXXGMGTANDLDF----VTSLTNCSSLKS 165
P FK GK++ +F + G N L+F L S+
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 166 LSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGT 225
++ +GG + N + +M+ + N +SG IP I ++ L L + N + G+
Sbjct: 610 CNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 226 IPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIP 275
IPD +G+L+ L +L L N L G IP ++ LT L ++ LS NNL G IP
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 154 VTSLTNCSSLKSLSLYDN--QFGGELPH-------SIANLSSTMI--------------- 189
+TSL +CS LK L++ N F G++ + +LS+ I
Sbjct: 116 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 190 ---QFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFL 246
+I GN+ISG + + VNL L + SN IP +G+ LQ L + N L
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKL 232
Query: 247 QGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP 299
G ++ T+L L +S N G IP ++L + NK TG +P
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 283
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 177 LPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNL 236
+P S+ANL + G N + G IPP I L L L + + G IPD + ++K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 237 QVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLI-SFRASHNKLT 295
L N L G++PPS+ +L L + N + G IP S G+ L S S N+LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 296 GALP 299
G +P
Sbjct: 188 GKIP 191
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 102/244 (41%), Gaps = 33/244 (13%)
Query: 79 LVNLPNLKELGVGG-NNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSXXXXXXXX 137
L NLP L L +GG NN VG IP +++ + L L + G + DF S
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTL 130
Query: 138 XXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQ 197
GT S+++ +L ++ N+ G +P S + S +I N+
Sbjct: 131 DFSYNALSGT-----LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 198 ISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQ---------- 247
++G IPP NL NL + + N L G + G KN Q + L +N L
Sbjct: 186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 248 -------------GSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL-ISFRASHNK 293
G++P L L L L +SFNNL G IP GN Q +S A++
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303
Query: 294 LTGA 297
L G+
Sbjct: 304 LCGS 307
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 89/226 (39%), Gaps = 33/226 (14%)
Query: 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLE 61
+P I L+ L L I ++ G IP L ++ LV L+ + N SG P I ++ +L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 62 LIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKG 121
I NR SG++P + + N G IP + +N NL +DL N +G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Query: 122 KVSIDFSSXXXXXXXXXXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSI 181
S+ F S + + + L N +L
Sbjct: 212 DASVLFGSD------------------------------KNTQKIHLAKNSLAFDL--GK 239
Query: 182 ANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIP 227
LS + + N+I GT+P G+ L L +L + N L G IP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 131/296 (44%), Gaps = 52/296 (17%)
Query: 4 DFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELI 63
D + NL+ L L + N++ + L L +L LN + NQ + + P + N+++LE +
Sbjct: 123 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERL 178
Query: 64 YLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKV 123
++ N+ S +L L NL+ L + NN + I L +NL+ L L GNQ K
Sbjct: 179 DISSNKVSD---ISVLAKLTNLESL-IATNNQISDIT-PLGILTNLDELSLNGNQLK--- 230
Query: 124 SIDFSSXXXXXXXXXXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIAN 183
D+ + SLTN L L L +NQ P S
Sbjct: 231 --------------------------DIGTLASLTN---LTDLDLANNQISNLAPLSGL- 260
Query: 184 LSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243
+ + + +G NQIS P + L L L ++ NQL P I LKNL L L+
Sbjct: 261 --TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 314
Query: 244 NFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP 299
N + P S +LTKL L +NN ++ SSL N N+ A HN+++ P
Sbjct: 315 NNISDISPVS--SLTKLQRLFF-YNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 136/315 (43%), Gaps = 38/315 (12%)
Query: 1 QLPDF--IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFP-RWICNI 57
QL D + NL+ L +L+ N + P L L NL L + NQ + + P + + N+
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL 131
Query: 58 SSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117
+ LEL T++ S L L +L++L N P L+N + LERLD+ N
Sbjct: 132 NRLELSSNTISDISA------LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 118 QFKGKVSI-----DFSSXXXXXXXXXXXXXXGMGT--------ANDLDFVTSLTNCSSLK 164
+ +S+ + S G+ T N L + +L + ++L
Sbjct: 184 KV-SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHG 224
L L +NQ P S + + + +G NQIS P + L L L ++ NQL
Sbjct: 243 DLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 297
Query: 225 TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284
P I LKNL L L+ N + P S +LTKL L S N + SSL N N+
Sbjct: 298 ISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNI 351
Query: 285 ISFRASHNKLTGALP 299
A HN+++ P
Sbjct: 352 NWLSAGHNQISDLTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 138/315 (43%), Gaps = 38/315 (12%)
Query: 1 QLPDF--IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFP-RWICNI 57
QL D + NL+ L +L+ N + P L L NL L + NQ + + P + + N+
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL 131
Query: 58 SSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117
+ LEL T++ S L L +L++L N P L+N + LERLD+ N
Sbjct: 132 NRLELSSNTISDISA------LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 118 QFKGKVSI-----DFSSXXXXXXXXXXXXXXGMGT--------ANDLDFVTSLTNCSSLK 164
+ +S+ + S G+ T N L + +L + ++L
Sbjct: 184 KV-SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 242
Query: 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHG 224
L L +NQ P S + + + +G NQIS P + L L L ++ NQL
Sbjct: 243 DLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 297
Query: 225 TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284
P I LKNL L L+ N + P S +LTKL L +NN ++ SSL N N+
Sbjct: 298 ISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFF-YNNKVSDV-SSLANLTNI 351
Query: 285 ISFRASHNKLTGALP 299
A HN+++ P
Sbjct: 352 NWLSAGHNQISDLTP 366
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 137/315 (43%), Gaps = 39/315 (12%)
Query: 1 QLPDF--IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFP-RWICNI 57
QL D + NL+ L +L+ N + P L L NL L + NQ + + P + + N+
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL 131
Query: 58 SSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117
+ LEL T++ S L L +L++L G N P L+N + LERLD+ N
Sbjct: 132 NRLELSSNTISDISA------LSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSN 182
Query: 118 QFKGKVSI-----DFSSXXXXXXXXXXXXXXGMGT--------ANDLDFVTSLTNCSSLK 164
+ +S+ + S G+ T N L + +L + ++L
Sbjct: 183 KV-SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 241
Query: 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHG 224
L L +NQ P S + + + +G NQIS P + L L L ++ NQL
Sbjct: 242 DLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 296
Query: 225 TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284
P I LKNL L L+ N + P S +LTKL L S N + SSL N N+
Sbjct: 297 ISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNI 350
Query: 285 ISFRASHNKLTGALP 299
A HN+++ P
Sbjct: 351 NWLSAGHNQISDLTP 365
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 139/315 (44%), Gaps = 39/315 (12%)
Query: 1 QLPDF--IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFP-RWICNI 57
QL D + NL+ L +L+ N + P L L NL L + NQ + + P + + N+
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL 131
Query: 58 SSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117
+ LEL T++ S L L +L++L G N P L+N + LERLD+ N
Sbjct: 132 NRLELSSNTISDISA------LSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSN 182
Query: 118 QFKGKVSI-----DFSSXXXXXXXXXXXXXXGMGT--------ANDLDFVTSLTNCSSLK 164
+ +S+ + S G+ T N L + +L + ++L
Sbjct: 183 KV-SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 241
Query: 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHG 224
L L +NQ P S + + + +G NQIS P + L L L ++ NQL
Sbjct: 242 DLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 296
Query: 225 TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284
P I LKNL L L+ N + P S +LTKL L +NN ++ SSL N N+
Sbjct: 297 ISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFF-YNNKVSDV-SSLANLTNI 350
Query: 285 ISFRASHNKLTGALP 299
A HN+++ P
Sbjct: 351 NWLSAGHNQISDLTP 365
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 139/315 (44%), Gaps = 39/315 (12%)
Query: 1 QLPDF--IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFP-RWICNI 57
QL D + NL+ L +L+ N + P L L NL L + NQ + + P + + N+
Sbjct: 79 QLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL 136
Query: 58 SSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117
+ LEL T++ S L L +L++L G N P L+N + LERLD+ N
Sbjct: 137 NRLELSSNTISDISA------LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 187
Query: 118 QFKGKVSI-----DFSSXXXXXXXXXXXXXXGMGT--------ANDLDFVTSLTNCSSLK 164
+ +S+ + S G+ T N L + +L + ++L
Sbjct: 188 KV-SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 246
Query: 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHG 224
L L +NQ P S + + + +G NQIS P + L L L ++ NQL
Sbjct: 247 DLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301
Query: 225 TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284
P I LKNL L L+ N + P S +LTKL L +NN ++ SSL N N+
Sbjct: 302 ISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFF-YNNKVSDV-SSLANLTNI 355
Query: 285 ISFRASHNKLTGALP 299
A HN+++ P
Sbjct: 356 NWLSAGHNQISDLTP 370
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 137/315 (43%), Gaps = 39/315 (12%)
Query: 1 QLPDF--IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFP-RWICNI 57
QL D + NL+ L +L+ N + P L L NL L + NQ + + P + + N+
Sbjct: 78 QLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNL 135
Query: 58 SSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117
+ LEL T++ S L L +L++L G N P L+N + LERLD+ N
Sbjct: 136 NRLELSSNTISDISA------LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 186
Query: 118 QFKGKVSI-----DFSSXXXXXXXXXXXXXXGMGT--------ANDLDFVTSLTNCSSLK 164
+ +S+ + S G+ T N L + +L + ++L
Sbjct: 187 KV-SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT 245
Query: 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHG 224
L L +NQ P S + + + +G NQIS P + L L L ++ NQL
Sbjct: 246 DLDLANNQISNLAPLSGL---TKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 300
Query: 225 TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284
P I LKNL L L+ N + P S +LTKL L + N + SSL N N+
Sbjct: 301 ISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNI 354
Query: 285 ISFRASHNKLTGALP 299
A HN+++ P
Sbjct: 355 NWLSAGHNQISDLTP 369
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 113/283 (39%), Gaps = 47/283 (16%)
Query: 23 GGQIPTTLGL--LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80
G ++ + G+ L NL YLN+ NQ + + P + N+ L +Y+ N+ + L
Sbjct: 53 GEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD---ISALQ 107
Query: 81 NLPNLKELGVGGNNFVGSIP---------------------DSLSNASNLERLDLPGNQF 119
NL NL+EL + +N P LSN + L L + ++
Sbjct: 108 NLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKV 167
Query: 120 KGKVSI----DFSSXXXXXXXXXXXXXXGMGTA--------NDLDFVTSLTNCSSLKSLS 167
K I D S T+ N + +T + N + L SL
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLK 227
Query: 168 LYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIP 227
+ +N+ P +ANLS + IG NQIS +++L L L + SNQ+
Sbjct: 228 IGNNKITDLSP--LANLSQ-LTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQISDI-- 280
Query: 228 DVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNL 270
V+ L L LFL N L +G LT L L LS N++
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 20/198 (10%)
Query: 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYL 65
+ N + L L + + + P + L +L L++ NQ + P + +++SL
Sbjct: 151 LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206
Query: 66 TVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSI 125
VN+ + P + N L L +G N P L+N S L L++ NQ
Sbjct: 207 YVNQITDITP---VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI------ 255
Query: 126 DFSSXXXXXXXXXXXXXXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLS 185
S +G +N + ++ L N S L SL L +NQ G E I L+
Sbjct: 256 ---SDINAVKDLTKLKXLNVG-SNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLT 311
Query: 186 STMIQFSIGGNQISGTIP 203
+ F + N I+ P
Sbjct: 312 NLTTLF-LSQNHITDIRP 328
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 173 FGGELPHSIANLS--STMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDSNQLHGTIPD- 228
GG H I+ L + + + GNQ+ ++P G+ L NL L + NQL ++PD
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127
Query: 229 VIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFR 288
V +L NL L L N LQ LT L +L LS+N LQ L R
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Query: 289 ASHNKL 294
N+L
Sbjct: 188 LYQNQL 193
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 191 FSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI 250
++GGN++ ++ L NL L + NQL V +L NL+ L L N LQ
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 251 PPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKL 294
LT L L L+ N LQ NL S+N+L
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 149 NDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-R 207
N L +++L ++L L L NQ LP+ + + + + + + NQ+ ++P G+
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD 130
Query: 208 NLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267
L NL L + NQL V +L NL L L N LQ LT+L DL L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 268 NNLQG 272
N L+
Sbjct: 191 NQLKS 195
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 36/171 (21%)
Query: 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSXXXXXXXXXXXX 141
LPN++ L +GGN +L +NL L L GNQ + + F
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDK------------ 107
Query: 142 XXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGT 201
LTN LK L L +NQ LP + + + + ++ NQ+ +
Sbjct: 108 ---------------LTN---LKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-S 147
Query: 202 IPPGI-RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIP 251
+P G+ L NL L + NQL V +L L+ L L++N L+ S+P
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 17 IRWNSLGG---QIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGS 73
+R+ +LGG + L L NL YL + NQ + +++L+ + L N+ S
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-S 123
Query: 74 LPFDILVNLPNLKELGVGGNNFVGSIPDSLSNA-SNLERLDLPGNQFKG 121
LP + L NL L + N S+P + + +NL LDL NQ +
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQS 171
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDSNQL 222
K L L N+ LP + + + + N++ T+P GI + L NL L + N+L
Sbjct: 40 KKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 223 HGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ 271
V +L NL L L RN L+ P +LTKL L+L +N LQ
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDS 219
+ L+ L L DN+ LP I + + N++ +P G+ LVNL L +D
Sbjct: 61 TKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDR 118
Query: 220 NQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSL-GNLTKLADLALSFNNLQGNIPS 276
NQL P V L L L L N LQ S+P + LT L +L L +NN +P
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL-YNNQLKRVPE 174
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%)
Query: 182 ANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFL 241
+N+ + + + N++S L L L ++ N+L + ELKNL+ L++
Sbjct: 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92
Query: 242 FRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKL 294
N LQ L LA+L L N L+ P + L +N+L
Sbjct: 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSN 220
+L++L + DN+ LP + + + + + NQ+ P +L L L++ N
Sbjct: 85 KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 221 QLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ 271
+L V +L +L+ L L+ N L+ + LT+L L L N L+
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
L NL L + NQ + PR +++ L + L N SLP + L +LKEL +
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL-Y 165
Query: 93 NNFVGSIPD-SLSNASNLERLDLPGNQFK 120
NN + +P+ + + L+ L L NQ K
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 163 LKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDSNQ 221
L L L NQ LP + + + + S+G N++ ++P G+ L +L L + +NQ
Sbjct: 111 LAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQ 168
Query: 222 LHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFN 268
L +L L+ L L N L+ + +L KL L L N
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 173 FGGELPHSIANLS--STMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDSNQLHGTIPD- 228
GG H I+ L + + + GNQ+ ++P G+ L NL L + NQL ++PD
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127
Query: 229 VIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQG 272
V +L NL L+L+ N LQ LT L L L N LQ
Sbjct: 128 VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 149 NDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-R 207
N L +++L ++L L L NQ LP+ + + + + + + NQ+ ++P G+
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD 130
Query: 208 NLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267
L NL L + NQL V +L NL L L N LQ LT+L L+L+
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 268 NNLQG 272
N L+
Sbjct: 191 NQLKS 195
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 191 FSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI 250
++GGN++ ++ L NL L + NQL V +L NL+ L L N LQ
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 251 PPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKL 294
LT L L L N LQ NL +N+L
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 13/165 (7%)
Query: 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSXXXXXXXXXXXX 141
LPN++ L +GGN +L +NL L L GNQ + + F
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 142 XXGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGT 201
D +T+LT L LY NQ LP + + + + + + NQ+ +
Sbjct: 120 QLQSLPDGVFDKLTNLT------YLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-S 171
Query: 202 IPPGI-RNLVNLVALTMDSNQLHGTIPD-VIGELKNLQVLFLFRN 244
+P G+ L L L+++ NQL ++PD V L +L ++L N
Sbjct: 172 LPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 17 IRWNSLGG---QIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGS 73
+R+ +LGG + L L NL YL + NQ + +++L+ + L N+ S
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-S 123
Query: 74 LPFDILVNLPNLKELGVGGNNFVGSIPDSLSNA-SNLERLDLPGNQFKG 121
LP + L NL L + N + S+P + + +NL RLDL NQ +
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYL 65
+ L+ L L++ N L L NL L + ENQ + +++L +YL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 66 TVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNA-SNLERLDLPGNQFKG 121
N+ SLP + L NL L + NN + S+P+ + + + L++L L NQ K
Sbjct: 141 YHNQLQ-SLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 177 LPHSIANLSSTMIQFSIGGNQISGTIPPGIRN-LVNLVALTMDSNQLHGTIPDVIGELKN 235
LP+ + + +++ Q +GGN++ ++P G+ N L +L L + +NQL V +L
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 236 LQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ 271
L+ L L N LQ LT+L DL L N L+
Sbjct: 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDS 219
+SL L L N+ LP+ + N +++ ++ NQ+ ++P G+ L L L +++
Sbjct: 52 TSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 220 NQLHGTIPD-VIGELKNLQVLFLFRNFLQGSIPPSL-GNLTKLADLALSFNNLQGNIP 275
NQL ++PD V +L L+ L L++N L+ S+P + LT L + L N P
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
LRNL+YL+++ F +SSLE++ + N F + DI L NL L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 93 NNFVGSIPDSLSNASNLERLDLPGNQFKG 121
P + ++ S+L+ L++ NQ K
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 81 NLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSID 126
+L LKEL V +N + S +P+ SN +NLE LDL N+ + D
Sbjct: 122 HLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFS----GMFPRWICNI 57
LPD L L L + L PT L +L LN+A NQ G+F R +
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR----L 517
Query: 58 SSLELIYLTVNRFSGSLP 75
+SL+ I+L N + S P
Sbjct: 518 TSLQKIWLHTNPWDCSCP 535
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 166 LSLYDNQFGGELP---HSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDSNQ 221
L L+DNQ P S+ NL + +G NQ+ G +P G+ +L L L + +NQ
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLK----ELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 222 LHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIP 275
L V L +L+ LF+ N L +P + LT L LAL N L+ +IP
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 163 LKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQIS----------------------- 199
LK L L NQ G LP + + + + +G NQ++
Sbjct: 66 LKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 200 GTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRN 244
+P GI L +L L +D NQL L +L +LF N
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 167 SLYDNQFGGELPHS---IANLSSTMIQFS------IGGNQISGTIPPGIRNLVNLVALTM 217
S YD+Q L S I N+S+ + ++ + GN ++ +P I+NL NL L +
Sbjct: 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277
Query: 218 DSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ 271
N+L ++P +G L+ + F N + ++P GNL L L + N L+
Sbjct: 278 SHNRL-TSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDS 219
+ L +L L +NQ LP + + + + + +GGNQ+ ++P G+ L L L +++
Sbjct: 83 TELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 220 NQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLAL 265
NQL +L NLQ L L N LQ + L KL + L
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
L L L +A NQ + + +++ L+ +YL N+ SLP + L LKEL +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 93 NNFVGSIPDSLSNASNLERLDLPGNQFK 120
N + +NL+ L L NQ +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 193 IGGNQISGTIPPGI-RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIP 251
+ NQ++ ++P G+ +L L L + NQL V L L+ L L N LQ SIP
Sbjct: 90 LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Query: 252 P-SLGNLTKLADLALSFNNLQ 271
+ LT L L+LS N LQ
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ 168
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 196 NQISGTIPPGI-RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSL 254
NQ+ T+ G+ +L L L + +NQL V L L L+L N L+ S+P +
Sbjct: 69 NQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV 126
Query: 255 -GNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKL 294
LTKL +L L+ N LQ + NL + S N+L
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDS 219
+ L +L L +NQ LP + + + + + +GGNQ+ ++P G+ L L L +++
Sbjct: 83 TELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 220 NQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLAL 265
NQL +L NLQ L L N LQ + L KL + L
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
L L L +A NQ + + +++ L+ +YL N+ SLP + L LKEL +
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 93 NNFVGSIPDSLSNASNLERLDLPGNQFK 120
N + +NL+ L L NQ +
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 193 IGGNQISGTIPPGI-RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIP 251
+ NQ++ ++P G+ +L L L + NQL V L L+ L L N LQ SIP
Sbjct: 90 LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Query: 252 P-SLGNLTKLADLALSFNNLQ 271
+ LT L L+LS N LQ
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQ 168
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 196 NQISGTIPPGI-RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSL 254
NQ+ T+ G+ +L L L + +NQL V L L L+L N L+ S+P +
Sbjct: 69 NQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV 126
Query: 255 -GNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKL 294
LTKL +L L+ N LQ + NL + S N+L
Sbjct: 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
LRNL+YL+++ F +SSLE++ + N F + DI L NL L +
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 93 NNFVGSIPDSLSNASNLERLDLPGNQF 119
P + ++ S+L+ L++ N F
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 9 LSALGILLIRWNSLGGQ-IPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTV 67
LS+L +L + NS +P LRNL +L++++ Q + P ++SSL+++ ++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 68 NRFSG--SLPFDILVNLPNLKELGVGGNNFVGSIPDSLSN-ASNLERLDLPGNQF 119
N F + P+ L +L+ L N+ + S L + S+L L+L N F
Sbjct: 209 NNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 205 GIRN-LVNLVALTMDSNQLHGT-IPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLAD 262
GI N L +L L M N +PD+ EL+NL L L + L+ P + +L+ L
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 263 LALSFNNL 270
L +S NN
Sbjct: 204 LNMSHNNF 211
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 186 STMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDSNQLHGTIPD-VIGELKNLQVLFLFR 243
S+ + + N++ ++P G+ L L L++ NQ+ ++PD V +L L +L+L
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85
Query: 244 NFLQGSIPPSL-GNLTKLADLALSFNNLQ 271
N LQ S+P + LT+L +LAL N L+
Sbjct: 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLK 113
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDS 219
SS L L N+ LPH + + + + + S+ NQI ++P G+ L L L +
Sbjct: 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85
Query: 220 NQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSL-GNLTKLADLALSFNNLQGNIP 275
N+L V +L L+ L L N L+ S+P + LT L + L N + P
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
LRNL+YL+++ F +SSLE++ + N F + DI L NL L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 93 NNFVGSIPDSLSNASNLERLDLPGNQF 119
P + ++ S+L+ L++ N F
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 9 LSALGILLIRWNSLGGQ-IPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTV 67
LS+L +L + NS +P LRNL +L++++ Q + P ++SSL+++ ++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 68 NRFSG--SLPFDILVNLPNLKELGVGGNNFVGSIPDSLSN-ASNLERLDLPGNQF 119
N F + P+ L +L+ L N+ + S L + S+L L+L N F
Sbjct: 504 NNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 81 NLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSID 126
+L LKEL V +N + S +P+ SN +NLE LDL N+ + D
Sbjct: 122 HLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 205 GIRN-LVNLVALTMDSNQLHGT-IPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLAD 262
GI N L +L L M N +PD+ EL+NL L L + L+ P + +L+ L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 263 LALSFNNL 270
L +S NN
Sbjct: 499 LNMSHNNF 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
LRNL+YL+++ F +SSLE++ + N F + DI L NL L +
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 93 NNFVGSIPDSLSNASNLERLDLPGNQF 119
P + ++ S+L+ L++ N F
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 9 LSALGILLIRWNSLGGQ-IPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTV 67
LS+L +L + NS +P LRNL +L++++ Q + P ++SSL+++ ++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 68 NRFSG--SLPFDILVNLPNLKELGVGGNNFVGSIPDSLSN-ASNLERLDLPGNQF 119
N F + P+ L +L+ L N+ + S L + S+L L+L N F
Sbjct: 528 NNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 81 NLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSID 126
+L LKEL V +N + S +P+ SN +NLE LDL N+ + D
Sbjct: 146 HLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 205 GIRN-LVNLVALTMDSNQLHGT-IPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLAD 262
GI N L +L L M N +PD+ EL+NL L L + L+ P + +L+ L
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 263 LALSFNNL 270
L +S NN
Sbjct: 523 LNMSHNNF 530
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYL 65
+ LS L +L + N + P L L NL YL++ NQ + + P + N+S L +
Sbjct: 131 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRA 186
Query: 66 TVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNL 109
N+ S P L +LPNL E+ + N P L+N SNL
Sbjct: 187 DDNKISDISP---LASLPNLIEVHLKDNQISDVSP--LANLSNL 225
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSN 220
++L+ L L DN LP + + GN+IS R L +L L + N
Sbjct: 128 AALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 221 QLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFN 268
++ P +L L L+LF N L +L L L L L+ N
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSN 220
++L+ L L DN LP + + GN+IS R L +L L + N
Sbjct: 129 AALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 221 QLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFN 268
++ P +L L L+LF N L +L L L L L+ N
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
L +L+ LN+++N + R N+ LE++ L+ N +L + LPNLKEL +
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDT 380
Query: 93 NNFVGSIPDSL 103
N + S+PD +
Sbjct: 381 NQ-LKSVPDGI 390
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGNQF 119
GN P L+ LE+L L NQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 81 NLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSIDF 127
+L LKEL V +N + S +P+ SN +NLE LDL N+ + D
Sbjct: 123 HLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGNQF 119
GN P L+ LE+L L NQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 81 NLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSIDF 127
+L LKEL V +N + S +P+ SN +NLE LDL N+ + D
Sbjct: 122 HLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 81 NLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSIDF 127
+L LKEL V +N + S +P+ SN +NLE LDL N+ + D
Sbjct: 124 HLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGNQF 119
GN P L+ LE+L L NQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 81 NLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSIDF 127
+L LKEL V +N + S +P+ SN +NLE LDL N+ + D
Sbjct: 124 HLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 193 IGGNQISGTIP---PGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQG- 248
+ GN I P G+ +L NLVA+ L + P IG+L L+ L + NF+
Sbjct: 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE-SFP--IGQLITLKKLNVAHNFIHSC 143
Query: 249 SIPPSLGNLTKLADLALSFNNLQ 271
+P NLT L + LS+N +Q
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQ 166
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGNQF 119
GN P L+ LE+L L NQ
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 193 IGGNQISGTIP---PGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQG- 248
+ GN I P G+ +L NLVA+ L + P IG+L L+ L + NF+
Sbjct: 82 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE-SFP--IGQLITLKKLNVAHNFIHSC 138
Query: 249 SIPPSLGNLTKLADLALSFNNLQ 271
+P NLT L + LS+N +Q
Sbjct: 139 KLPAYFSNLTNLVHVDLSYNYIQ 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 81 NLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSIDF 127
+L LKEL V +N + S +P+ SN +NLE LDL N+ + D
Sbjct: 123 HLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 11 ALGILLIRWNSLGGQIPT--TLGLLRNLVYLNVAENQFSGM--FPRWICNISSLELIYLT 66
+L L++R N L T TL L+NL +++++N F M +W + L L
Sbjct: 362 SLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTR 421
Query: 67 VNRFSGSLP--FDIL-----------VNLPNLKELGVGGNNFVGSIPDS 102
++ +G +P +IL +NLP LKEL + N + ++PD+
Sbjct: 422 IHSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLM-TLPDA 469
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 7 GNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLT 66
NL L + R N++ G +LG +L +L++++N S + W +SSL+ + L
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106
Query: 67 VNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPG 116
N + + NL NL+ L +G + S + R+D G
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGN----------VETFSEIRRIDFAG 146
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 104/263 (39%), Gaps = 36/263 (13%)
Query: 4 DFIGNLSALGILLIRWNSLGGQIPTTLGL-LRNLVYLNVAENQFSGMFPRWICNISSLEL 62
+F L++L +L++R N++ P + L +R L++ N+ + + N
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG--- 179
Query: 63 IYLTVNRFSGSLPFDILVNLPNLKELGVG----GNNFVGSIPDSLSNASNLERLDLPGNQ 118
+ T+ R S + L ++ E +G GN F + ++ LDL GN
Sbjct: 180 KHFTLLRLSS-------ITLQDMNEYWLGWEKCGNPFKNT---------SITTLDLSGNG 223
Query: 119 FKGKVSIDF------SSXXXXXXXXXXXXXXGMGTANDLD---FVTSLTNCSSLKSLSLY 169
FK ++ F + G N D F S +K+ L
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 170 DNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPD- 228
++ L ++ + + Q ++ N+I+ L +L L +D+NQL ++PD
Sbjct: 284 KSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVPDG 341
Query: 229 VIGELKNLQVLFLFRNFLQGSIP 251
+ L +LQ ++L N S P
Sbjct: 342 IFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 7 GNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLT 66
NL L + R N++ G +LG +L +L++++N S + W +SSL+ + L
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 132
Query: 67 VNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPG 116
N + + NL NL+ L +G + S + R+D G
Sbjct: 133 GNPYQTLGVTSLFPNLTNLQTLRIGN----------VETFSEIRRIDFAG 172
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDS 219
++ + L LYDNQ P L+ + + + NQ++ +P G+ L L L+++
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQ-LTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 95
Query: 220 NQLHGTIPDVIGELKNLQVLFLFRN 244
NQL LK+L ++L N
Sbjct: 96 NQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-RNLVNLVALTMDS 219
++ + L LYDNQ P L+ + + + NQ++ +P G+ L L L+++
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQ-LTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87
Query: 220 NQLHGTIPDVIGELKNLQVLFLFRN 244
NQL LK+L ++L N
Sbjct: 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 7 GNLSALGILLIRWNSLG--GQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIY 64
G+L+ L L+++ N L +I +++L L++++N S + C+ +
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK---SL 401
Query: 65 LTVNRFSGSLPFDILVNLP-NLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKG 121
L++N S L I LP +K L + N + SIP + L+ L++ NQ K
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKS 458
>pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
Length = 354
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 31/132 (23%)
Query: 14 ILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSG- 72
+L R N LG Q LR+++ N E + +L L+ L N++S
Sbjct: 190 VLARRLNELGIQ------KLRDILSKNYNE------LEKITGKAKALYLLKLAQNKYSEP 237
Query: 73 -------------SLPF---DILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDL-- 114
+LP+ D+ V LP LK+ N V IP ++ + +E LD+
Sbjct: 238 VENKSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILS 297
Query: 115 PGNQFKGKVSID 126
G +FK +SID
Sbjct: 298 KGKKFKHGISID 309
>pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
pdb|4F4Y|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
Length = 362
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 73 SLPF---DILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDL--PGNQFKGKVSID 126
+LP+ D+ V LP LK+ N V IP ++ + +E LD+ G +FK +SID
Sbjct: 251 TLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISID 309
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 174 GGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGEL 233
G P L T+++ S G ++ +P GI ++ L +D NQ +P +
Sbjct: 1 GSRCPTECTCLD-TVVRCSNKGLKV---LPKGIPR--DVTELYLDGNQF-TLVPKELSNY 53
Query: 234 KNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284
K+L ++ L N + S N+T+L L LS+N L+ P + ++L
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 165 SLSLYDNQFGGELPHSIANLSS-TMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLH 223
L L NQF +P ++N T+I S N+IS N+ L+ L + N+L
Sbjct: 35 ELYLDGNQFT-LVPKELSNYKHLTLIDLS--NNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 224 GTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNI 274
P LK+L++L L N + + +L+ L+ LA+ N L +
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142
>pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase
pdb|3BQ1|A Chain A, Insertion Ternary Complex Of Dbh Dna Polymerase
pdb|3BQ2|A Chain A, Post-Insertion Binary Complex Of Dbh Dna Polymerase
pdb|4HYK|A Chain A, Dbh Ternary Complex (substrates Partially Disordered)
Length = 354
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 31/132 (23%)
Query: 14 ILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSG- 72
+L R N LG Q LR+++ N E + +L L+ L N++S
Sbjct: 190 VLARRLNELGIQ------KLRDILSKNYNE------LEKITGKAKALYLLKLAQNKYSEP 237
Query: 73 -------------SLPF---DILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDL-- 114
+LP+ D+ V LP LK+ N V IP ++ + +E LD+
Sbjct: 238 VENKSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILS 297
Query: 115 PGNQFKGKVSID 126
G +FK +SID
Sbjct: 298 KGKKFKHGISID 309
>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
Length = 1253
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 275 PSSLGNCQNLISFRASHNKLTGALPYQ 301
P S+ QNL F A+HNK+T +L Q
Sbjct: 201 PQSIQESQNLSMFLANHNKITQSLQQQ 227
>pdb|4F4Z|B Chain B, Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh
pdb|4F4Z|A Chain A, Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh
Length = 361
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 73 SLPF---DILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDL--PGNQFKGKVSID 126
+LP+ D+ V LP LK+ N V IP ++ + +E LD+ G +FK +SID
Sbjct: 250 TLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISID 308
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92
LR+L YLN++ N+ G+ + LEL+ + P NL L+ L +
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 93 NNFVGSIPDSLSNASNLERLDLPGNQFK-GKVS 124
S L+ +L L+L GN F+ G +S
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSIS 466
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSN 220
++L+ L L DN LP + + + GN+I R L +L L + N
Sbjct: 128 AALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 221 QLHGTIPDVIGELKNLQVLFLFRN 244
+ P +L L L+LF N
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFAN 210
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 75 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 132
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGN 117
GN P L+ LE+L L N
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANN 159
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 7 GNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLT 66
G L LG L + N L +P L L L+V+ N+ + + + + L+ +YL
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 67 VNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLD 113
N +LP +L P L++L + NN +P L N LE LD
Sbjct: 134 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG--LENLD 176
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGNQF 119
GN P L+ LE+L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGN 117
GN P L+ LE+L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 7 GNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLT 66
G L LG L + N L +P L L L+V+ N+ + + + + L+ +YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 67 VNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLD 113
N +LP +L P L++L + NN +P L N LE LD
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG--LENLD 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGN 117
GN P L+ LE+L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 7 GNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLT 66
G L LG L + N L +P L L L+V+ N+ + + + + L+ +YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 67 VNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLD 113
N +LP +L P L++L + NN +P L N LE LD
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG--LENLD 175
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGN 117
GN P L+ LE+L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 7 GNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLT 66
G L LG L + N L +P L L L+V+ N+ + + + + L+ +YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 67 VNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLD 113
N +LP +L P L++L + NN +P L N LE LD
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG--LENLD 175
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90
G L L L+++ NQ + P + +L ++ ++ NR + SLP L L L+EL +
Sbjct: 74 GTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 91 GGNNFVGSIPDSLSNASNLERLDLPGN 117
GN P L+ LE+L L N
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANN 158
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 7 GNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLT 66
G L LG L + N L +P L L L+V+ N+ + + + + L+ +YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 67 VNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLD 113
N +LP +L P L++L + NN +P L N LE LD
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG--LENLD 175
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 228 DVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNL----QGNIPSSL 278
DV L +LQVL+L N+L P +LT L L+L+ N L ++P++L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%)
Query: 176 ELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKN 235
+L H +L S + ++ NQ+ P L L N + P++ L
Sbjct: 15 KLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL 74
Query: 236 LQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295
L+VL L N L + T L +L L N++ + N +NLI SHN L+
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 296 GA 297
Sbjct: 135 ST 136
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 39 LNVAENQFSGMFPRWICNISSLELIYLTVNRF-SGSLPFDILVNLPNLKELGVGGNNFVG 97
L +E+ FSG+ +W N++ L+L Y ++ +GS + LP+L+ L + NN
Sbjct: 235 LATSESTFSGL--KWT-NLTQLDLSYNNLHDVGNGSFSY-----LPSLRYLSLEYNNIQR 286
Query: 98 SIPDSLSNASNLERLDLPGNQFKGKVSI 125
P S SNL L L K VS+
Sbjct: 287 LSPRSFYGLSNLRYLSLKRAFTKQSVSL 314
>pdb|3CU2|A Chain A, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
pdb|3CU2|B Chain B, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
Length = 237
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 11 ALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMF 50
++GIL W L ++ T L N+++ ++A+ QFS +F
Sbjct: 17 SVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLF 56
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 51 PRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLE 110
P N+ L ++ L N S SLP I N P L L + NN D+ ++L+
Sbjct: 116 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 111 RLDLPGNQF 119
L L N+
Sbjct: 175 NLQLSSNRL 183
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 193 IGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPP 252
+ NQI+ P +LVNL L +SN+L V +L L L L N L+ SIP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPR 98
Query: 253 -SLGNLTKLADLALSFNN 269
+ NL L + L +NN
Sbjct: 99 GAFDNLKSLTHIYL-YNN 115
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 26 IPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85
+P L LR L L ++N + + N+ L+ + L NR S LV+ P L
Sbjct: 478 LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 86 KELGVGGNNFV 96
L + GN+
Sbjct: 536 VLLNLQGNSLC 546
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,558,925
Number of Sequences: 62578
Number of extensions: 356063
Number of successful extensions: 1076
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 283
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)