Query 048828
Match_columns 367
No_of_seqs 221 out of 2610
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 13:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-35 2.5E-40 300.8 21.6 325 2-336 204-576 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.5E-35 5.5E-40 298.3 23.2 322 1-331 179-547 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.5E-35 5.3E-40 260.4 4.0 331 5-346 97-430 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.2E-35 1.3E-39 257.9 0.5 334 1-345 116-453 (873)
5 KOG0444 Cytoskeletal regulator 100.0 3.1E-30 6.6E-35 230.4 -2.9 311 1-327 46-381 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.7E-30 3.7E-35 232.0 -4.8 331 2-355 24-380 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 4.7E-28 1E-32 205.7 -5.4 154 164-325 391-544 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.4E-27 7.4E-32 200.5 -6.5 205 1-222 105-309 (565)
9 PLN03210 Resistant to P. syrin 99.9 2E-22 4.4E-27 205.3 23.6 319 4-346 552-908 (1153)
10 PLN03210 Resistant to P. syrin 99.9 1.1E-22 2.5E-27 207.1 21.8 301 26-349 550-887 (1153)
11 KOG4237 Extracellular matrix p 99.9 1.4E-24 3E-29 184.2 -3.7 290 2-294 61-358 (498)
12 PRK15387 E3 ubiquitin-protein 99.9 7.6E-21 1.6E-25 181.4 16.3 265 10-327 201-465 (788)
13 KOG0618 Serine/threonine phosp 99.8 7.4E-23 1.6E-27 190.6 -3.2 87 6-96 41-127 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 6.3E-20 1.4E-24 175.2 16.5 254 1-305 215-468 (788)
15 KOG0618 Serine/threonine phosp 99.8 2.2E-22 4.8E-27 187.5 -3.5 279 15-318 183-487 (1081)
16 KOG4237 Extracellular matrix p 99.8 1.7E-22 3.7E-27 171.6 -6.4 286 35-329 68-368 (498)
17 cd00116 LRR_RI Leucine-rich re 99.8 9.7E-21 2.1E-25 168.5 -0.0 281 14-319 2-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.8 1E-20 2.2E-25 168.3 -0.6 256 39-322 3-293 (319)
19 PRK15370 E3 ubiquitin-protein 99.8 3.2E-18 6.9E-23 164.5 13.4 117 12-144 180-296 (754)
20 PRK15370 E3 ubiquitin-protein 99.8 6.2E-18 1.3E-22 162.5 12.5 247 34-320 178-428 (754)
21 KOG0617 Ras suppressor protein 99.6 3.1E-17 6.6E-22 124.6 -2.1 164 128-304 30-194 (264)
22 KOG0617 Ras suppressor protein 99.6 6.2E-17 1.3E-21 122.9 -4.0 170 155-332 27-197 (264)
23 KOG1909 Ran GTPase-activating 99.5 1.4E-15 3E-20 128.1 -1.3 193 102-295 87-311 (382)
24 KOG1909 Ran GTPase-activating 99.4 5.1E-15 1.1E-19 124.7 -2.4 140 129-271 155-311 (382)
25 KOG3207 Beta-tubulin folding c 99.2 2.8E-12 6.1E-17 111.4 1.1 209 56-271 119-339 (505)
26 KOG3207 Beta-tubulin folding c 99.2 1.9E-12 4.2E-17 112.4 -0.3 163 7-174 118-284 (505)
27 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.9E-16 96.3 4.9 125 35-168 20-147 (175)
28 KOG4658 Apoptotic ATPase [Sign 99.1 4.5E-11 9.8E-16 117.4 6.1 276 8-295 521-807 (889)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.8E-11 4E-16 96.8 2.5 126 8-138 17-147 (175)
30 PLN03150 hypothetical protein; 99.1 1.9E-10 4E-15 110.6 8.1 113 212-324 420-532 (623)
31 COG4886 Leucine-rich repeat (L 99.1 2.5E-10 5.5E-15 104.6 8.1 198 38-252 97-295 (394)
32 KOG1259 Nischarin, modulator o 99.1 4.4E-11 9.6E-16 99.4 1.6 130 160-296 283-413 (490)
33 COG4886 Leucine-rich repeat (L 99.0 6.9E-10 1.5E-14 101.7 6.9 195 62-273 97-292 (394)
34 KOG0532 Leucine-rich repeat (L 99.0 1.7E-11 3.6E-16 110.1 -3.9 196 106-318 74-271 (722)
35 KOG4658 Apoptotic ATPase [Sign 99.0 2.5E-10 5.4E-15 112.3 2.7 107 9-117 544-652 (889)
36 KOG0532 Leucine-rich repeat (L 99.0 2.3E-11 5E-16 109.2 -4.1 213 63-293 55-271 (722)
37 COG5238 RNA1 Ran GTPase-activa 98.9 1.2E-10 2.6E-15 95.5 -0.1 239 56-295 28-316 (388)
38 PF13855 LRR_8: Leucine rich r 98.9 8.7E-10 1.9E-14 71.8 3.8 57 60-117 3-59 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.3E-14 71.4 4.2 60 235-294 2-61 (61)
40 PLN03150 hypothetical protein; 98.9 4.8E-09 1E-13 100.9 8.3 109 188-296 420-529 (623)
41 KOG1259 Nischarin, modulator o 98.9 5E-10 1.1E-14 93.2 0.9 224 32-272 180-413 (490)
42 KOG2120 SCF ubiquitin ligase, 98.8 3.3E-11 7.1E-16 100.0 -7.9 179 83-268 185-373 (419)
43 KOG0531 Protein phosphatase 1, 98.8 5.3E-10 1.2E-14 102.7 -1.8 245 33-298 71-321 (414)
44 KOG0531 Protein phosphatase 1, 98.8 9.2E-10 2E-14 101.2 -1.2 247 8-274 70-321 (414)
45 KOG2982 Uncharacterized conser 98.8 1.7E-09 3.8E-14 89.9 0.5 226 58-288 45-285 (418)
46 COG5238 RNA1 Ran GTPase-activa 98.7 2.4E-09 5.3E-14 87.9 -1.0 238 33-272 29-317 (388)
47 KOG2982 Uncharacterized conser 98.6 3.6E-09 7.7E-14 88.1 -1.0 204 32-240 69-285 (418)
48 KOG2120 SCF ubiquitin ligase, 98.6 2.2E-10 4.9E-15 95.1 -8.3 178 131-317 185-373 (419)
49 KOG1859 Leucine-rich repeat pr 98.4 3.1E-09 6.7E-14 98.5 -7.0 125 188-319 166-291 (1096)
50 KOG1859 Leucine-rich repeat pr 98.4 1.9E-08 4.2E-13 93.3 -3.7 127 60-199 166-292 (1096)
51 KOG4341 F-box protein containi 98.3 1.6E-08 3.5E-13 87.9 -4.3 278 11-293 139-437 (483)
52 KOG1644 U2-associated snRNP A' 98.3 1.2E-06 2.7E-11 69.2 5.9 129 37-172 22-151 (233)
53 PF13306 LRR_5: Leucine rich r 98.3 3.2E-06 6.9E-11 64.3 7.5 121 6-133 8-128 (129)
54 KOG3665 ZYG-1-like serine/thre 98.3 2E-07 4.3E-12 89.9 0.2 156 34-191 122-280 (699)
55 KOG4341 F-box protein containi 98.1 5.1E-08 1.1E-12 84.9 -6.4 282 4-289 158-459 (483)
56 PF13306 LRR_5: Leucine rich r 98.1 1.7E-05 3.7E-10 60.2 7.4 108 27-140 5-112 (129)
57 KOG4579 Leucine-rich repeat (L 98.1 3.3E-07 7.2E-12 67.7 -2.2 119 207-329 50-168 (177)
58 KOG4579 Leucine-rich repeat (L 98.0 2E-07 4.2E-12 68.9 -4.1 88 157-247 49-136 (177)
59 PRK15386 type III secretion pr 98.0 7.7E-05 1.7E-09 66.8 10.4 54 57-117 51-104 (426)
60 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.4E-10 62.4 5.2 125 13-142 22-151 (233)
61 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 47.6 3.3 36 259-295 2-37 (44)
62 PF12799 LRR_4: Leucine Rich r 97.9 1.9E-05 4E-10 47.1 3.4 34 36-70 3-36 (44)
63 PRK15386 type III secretion pr 97.8 0.00016 3.5E-09 64.8 9.9 137 31-196 49-187 (426)
64 KOG3665 ZYG-1-like serine/thre 97.7 3.5E-05 7.6E-10 74.6 3.8 131 10-143 122-262 (699)
65 KOG1947 Leucine rich repeat pr 97.4 1.1E-05 2.3E-10 76.2 -4.2 113 56-173 186-307 (482)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00012 2.5E-09 60.7 1.1 85 82-169 64-151 (260)
67 KOG2739 Leucine-rich acidic nu 97.2 0.00011 2.4E-09 60.8 0.5 39 105-143 63-103 (260)
68 KOG1947 Leucine rich repeat pr 97.2 4.5E-05 9.8E-10 71.9 -2.3 111 33-143 187-307 (482)
69 KOG2123 Uncharacterized conser 96.8 5.8E-05 1.3E-09 62.9 -4.4 92 209-304 18-110 (388)
70 KOG2123 Uncharacterized conser 96.6 0.00012 2.5E-09 61.2 -4.0 79 35-118 20-99 (388)
71 KOG4308 LRR-containing protein 95.6 3.5E-05 7.6E-10 71.4 -12.7 206 85-292 89-328 (478)
72 KOG3864 Uncharacterized conser 94.6 0.0046 9.9E-08 49.5 -1.8 82 211-292 102-186 (221)
73 PF00560 LRR_1: Leucine Rich R 94.6 0.021 4.6E-07 28.1 1.2 12 36-47 2-13 (22)
74 PF00560 LRR_1: Leucine Rich R 94.4 0.028 6.1E-07 27.6 1.5 12 85-96 2-13 (22)
75 KOG4308 LRR-containing protein 94.1 0.00018 3.9E-09 66.8 -12.3 187 36-224 89-304 (478)
76 PF13504 LRR_7: Leucine rich r 93.7 0.053 1.1E-06 24.7 1.5 12 283-294 2-13 (17)
77 KOG3864 Uncharacterized conser 93.3 0.0088 1.9E-07 47.9 -2.4 83 188-270 103-188 (221)
78 PF13516 LRR_6: Leucine Rich r 92.1 0.043 9.4E-07 27.6 -0.0 13 259-271 3-15 (24)
79 smart00370 LRR Leucine-rich re 91.4 0.18 3.8E-06 25.8 1.9 21 58-79 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 91.4 0.18 3.8E-06 25.8 1.9 21 58-79 2-22 (26)
81 KOG0473 Leucine-rich repeat pr 84.7 0.015 3.4E-07 47.6 -7.2 88 205-295 37-124 (326)
82 KOG0473 Leucine-rich repeat pr 83.2 0.025 5.5E-07 46.4 -6.5 81 188-271 44-124 (326)
83 KOG4242 Predicted myosin-I-bin 77.4 17 0.00036 33.7 8.3 15 35-49 166-180 (553)
84 smart00368 LRR_RI Leucine rich 73.1 2.2 4.7E-05 22.3 1.1 13 283-295 3-15 (28)
85 smart00364 LRR_BAC Leucine-ric 72.7 2.6 5.7E-05 21.6 1.3 15 310-325 5-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 69.4 4.5 9.8E-05 20.7 1.8 13 108-120 3-15 (26)
87 KOG3763 mRNA export factor TAP 67.6 2.7 5.8E-05 39.4 1.1 67 232-298 216-286 (585)
88 smart00367 LRR_CC Leucine-rich 61.5 5.7 0.00012 20.1 1.3 15 281-295 1-16 (26)
89 KOG3763 mRNA export factor TAP 60.9 4.2 9.1E-05 38.2 1.1 67 256-323 216-286 (585)
90 KOG4242 Predicted myosin-I-bin 59.4 35 0.00075 31.8 6.5 106 9-118 164-279 (553)
91 TIGR00864 PCC polycystin catio 37.6 16 0.00035 41.5 1.2 32 264-295 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-35 Score=300.84 Aligned_cols=325 Identities=32% Similarity=0.549 Sum_probs=194.8
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
+|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+ ..
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~ 282 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FS 282 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hh
Confidence 56667777777777777777776677777777777777777777766677777777777777777777665555443 46
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCC
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCS 161 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (367)
+++|++|++++|.+...+|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+ ..+..++
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p------~~l~~~~ 356 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP------KNLGKHN 356 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC------hHHhCCC
Confidence 6677777777666665566666666666666666666655555555566666666666555442211 1222223
Q ss_pred CCcEEEcccCcc------------------------ccccChhhhhhcccceEEEecCCcccccCCcccc----------
Q 048828 162 SLKSLSLYDNQF------------------------GGELPHSIANLSSTMIQFSIGGNQISGTIPPGIR---------- 207 (367)
Q Consensus 162 ~L~~L~l~~~~~------------------------~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~---------- 207 (367)
+|+.|++++|.+ .+..|..+..+.. ++.+++++|.+.+..|..+.
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC-CCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 333333333332 2222222222221 44444444444333333333
Q ss_pred --------------CCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccc
Q 048828 208 --------------NLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGN 273 (367)
Q Consensus 208 --------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~ 273 (367)
.+++|+.|++++|.+.+..|..+ ..++|+.|++++|++++..|..+..+++|+.|++++|.+.+.
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 514 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceee
Confidence 34444444444444433333322 234566666666666655666666677777777777777766
Q ss_pred cCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccCCCCCCCC
Q 048828 274 IPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFTGRRPTDS 336 (367)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~~~~~~~~ 336 (367)
.|..+..+++|+.|++++|.+++.+|..+..++.+ ++|++++|.+++.+|..+.....+..+
T Consensus 515 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL-SQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred CChHHcCccCCCEEECCCCcccccCChhHhCcccC-CEEECCCCcccccCChhHhcCcccCEE
Confidence 77777777777777777777777777777777666 777777777777777776665554444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-35 Score=298.28 Aligned_cols=322 Identities=31% Similarity=0.489 Sum_probs=229.3
Q ss_pred CCCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 1 QLPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 1 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
.+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +.
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~ 257 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LG 257 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-Hh
Confidence 36888999999999999999999899999999999999999999999899999999999999999999998677755 47
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCC
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNC 160 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
.+++|++|++++|.+....|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+....+ ..+..+
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~l 331 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VALTSL 331 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------hhHhcC
Confidence 89999999999999988889899999999999999999998888889999999999999998865433 456788
Q ss_pred CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCC------------------------CCCcEEE
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNL------------------------VNLVALT 216 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~------------------------~~L~~L~ 216 (367)
++|+.|++++|.+.+..|..+..... ++.+++++|.+.+..|..+..+ ++|+.|+
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCC-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 99999999999998888887766654 8888888777765555554444 4455555
Q ss_pred ccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeec-----------------------cc
Q 048828 217 MDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ-----------------------GN 273 (367)
Q Consensus 217 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~-----------------------~~ 273 (367)
+++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+. +.
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~ 490 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA 490 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCc
Confidence 5555544444444444445555555555444433333333344444444444333 23
Q ss_pred cCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccCCC
Q 048828 274 IPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFTGR 331 (367)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~~~ 331 (367)
.+..+..+++|+.|++++|.+.+.+|..+..+..+ ++|++++|.+++.+|..+....
T Consensus 491 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL-VSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred cChhhhhhhccCEEECcCCcceeeCChHHcCccCC-CEEECCCCcccccCChhHhCcc
Confidence 33333334444444444444444444444444444 4444444444444444444433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-35 Score=260.41 Aligned_cols=331 Identities=20% Similarity=0.207 Sum_probs=185.7
Q ss_pred hhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCC
Q 048828 5 FIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPN 84 (367)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 84 (367)
.|.++++|+++++..|.+. .+|..-....+|+.|++.+|.|..+..+.+..++.|+.||++.|.+. +++...|..-.+
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~n 174 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVN 174 (873)
T ss_pred HHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCC
Confidence 3566777777777777666 45554445556777777777777666777777777777777777776 666665555567
Q ss_pred ccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCc
Q 048828 85 LKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLK 164 (367)
Q Consensus 85 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 164 (367)
+++|+|++|.++....+.|..+.+|..|.++.|+++......|+.+++|+.|+|..|++..... ..+..+++|+
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~------ltFqgL~Sl~ 248 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG------LTFQGLPSLQ 248 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh------hhhcCchhhh
Confidence 7777777777776666667777777777777777776666667777777777777777643322 3444555555
Q ss_pred EEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCc
Q 048828 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRN 244 (367)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 244 (367)
.|.+..|.+. ...+..+.....+++|++..|++...-..++.+++.|+.|++++|.|....++.+..+++|+.|+|++|
T Consensus 249 nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 249 NLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 5555555554 333333333333555555555555444445555555555555555555444444445555555555555
Q ss_pred cccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCC---cchhhhhhcccceeEeccCCeeee
Q 048828 245 FLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGA---LPYQLLSITTLSLYLDLSYNLLNG 321 (367)
Q Consensus 245 ~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~~ll~~L~l~~n~i~~ 321 (367)
+++...+..|..+..|++|+++.|.+......+|..+.+|+.|+|+.|.++.. ....|..++.+ +.|.+.||++.
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L-rkL~l~gNqlk- 405 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL-RKLRLTGNQLK- 405 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh-hheeecCceee-
Confidence 55544444444444444444444444433333344444444444444444311 12223333333 44444444443
Q ss_pred ccCccccCCCCCCCCCcCCccchhh
Q 048828 322 SLPLQMFTGRRPTDSAFTEGLTLHE 346 (367)
Q Consensus 322 ~~p~~~~~~~~~~~~~~~~~~~l~~ 346 (367)
.+|...|.+...+...-.+.+.+.+
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred ecchhhhccCcccceecCCCCccee
Confidence 4444444444433333333333333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-35 Score=257.87 Aligned_cols=334 Identities=20% Similarity=0.205 Sum_probs=260.6
Q ss_pred CCCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 1 QLPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 1 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
.||..-....+|+.|+|.+|.|...-...++.++.|++||++.|.|..+.-..|..-.++++|++++|.|+ .+....|.
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~ 194 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFD 194 (873)
T ss_pred hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-cccccccc
Confidence 36777777778999999999998777788888899999999999988666667777788999999999998 77777788
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCC
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNC 160 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
.+.+|..|.|+.|.++..-+..|+++++|+.|++..|.+......+|.++++|+.|.|..|.+..... ..+-.+
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D------G~Fy~l 268 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD------GAFYGL 268 (873)
T ss_pred ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC------cceeee
Confidence 88899999999999884445567789999999999998886666778899999999998888876555 355667
Q ss_pred CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEE
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLF 240 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 240 (367)
.++++|++..|++...-..+++.+. .|+.|++++|.|..+.+++...+++|++|++++|+++...+..|..+..|+.|.
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred cccceeecccchhhhhhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 8888999998888733333444444 488899999988888888888889999999999998877777888888899999
Q ss_pred ccCccccccCCccccCCCCCCeEEccCCeeccc---cCcccccCCCCcEEEcCCCcccCCcch-hhhhhcccceeEeccC
Q 048828 241 LFRNFLQGSIPPSLGNLTKLADLALSFNNLQGN---IPSSLGNCQNLISFRASHNKLTGALPY-QLLSITTLSLYLDLSY 316 (367)
Q Consensus 241 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~ll~~L~l~~ 316 (367)
|+.|.+.......|..+++|++||+++|.+... ....|..+++|+.|++.||++. .+|. +|.++..+ +.||+.+
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~L-E~LdL~~ 425 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEAL-EHLDLGD 425 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCccc-ceecCCC
Confidence 999988876667788888999999998877642 3345777888999999999888 4554 56666777 8999999
Q ss_pred CeeeeccCccccCCCCCCCCCcCCccchh
Q 048828 317 NLLNGSLPLQMFTGRRPTDSAFTEGLTLH 345 (367)
Q Consensus 317 n~i~~~~p~~~~~~~~~~~~~~~~~~~l~ 345 (367)
|.|-..-|..|.. ..+-++.+.+...+.
T Consensus 426 NaiaSIq~nAFe~-m~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 426 NAIASIQPNAFEP-MELKELVMNSSSFLC 453 (873)
T ss_pred Ccceeeccccccc-chhhhhhhcccceEE
Confidence 9887344444443 355444444433333
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.1e-30 Score=230.38 Aligned_cols=311 Identities=25% Similarity=0.395 Sum_probs=228.5
Q ss_pred CCCchhccCCCCcEEEccCcccCC------------------------CCccccCCCCCCcEEEccCccccCCcchhccC
Q 048828 1 QLPDFIGNLSALGILLIRWNSLGG------------------------QIPTTLGLLRNLVYLNVAENQFSGMFPRWICN 56 (367)
Q Consensus 1 ~l~~~~~~~~~L~~L~l~~~~~~~------------------------~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 56 (367)
++|+.++.+++|++|.+.+|++.. -+|..+..+..|..||+|+|++. ..|..+..
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~ 124 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY 124 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh
Confidence 356666677777777666665431 14555566777888888888876 67777777
Q ss_pred CCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeE
Q 048828 57 ISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWL 136 (367)
Q Consensus 57 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 136 (367)
.+++-+|++++|.|. .||...|.+++.|-.|++++|.+. .+|..+..+.+|++|++++|.+.-.....+.++.+|++|
T Consensus 125 AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred hcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 777888888888886 788777778888888888888776 667777788888888888887765555666777777777
Q ss_pred EcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEE
Q 048828 137 NLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALT 216 (367)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 216 (367)
.+++.+-+.. .++.++..+.+|+.++++.|.+. ..|+.+..+.. |+.|++++|.++ .+........+|++|+
T Consensus 203 hms~TqRTl~-----N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~-LrrLNLS~N~it-eL~~~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 203 HMSNTQRTLD-----NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN-LRRLNLSGNKIT-ELNMTEGEWENLETLN 274 (1255)
T ss_pred hcccccchhh-----cCCCchhhhhhhhhccccccCCC-cchHHHhhhhh-hheeccCcCcee-eeeccHHHHhhhhhhc
Confidence 7777654322 34566777778888888888777 67777777665 888888888877 3444455667788888
Q ss_pred ccCCcccccccccccCccCCcEEEccCccccc-cCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 217 MDSNQLHGTIPDVIGELKNLQVLFLFRNFLQG-SIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 217 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
++.|+++ ..|.+++.++.|+.|.+.+|+++- -+|..++.+..|+.+...+|.+. ..|..++.|++|+.|.|+.|.+.
T Consensus 275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 8888887 777778888888888888887762 35677788888888888888776 77888888888888888888777
Q ss_pred CCcchhhhhhcccceeEeccCCeeeeccCccc
Q 048828 296 GALPYQLLSITTLSLYLDLSYNLLNGSLPLQM 327 (367)
Q Consensus 296 ~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~ 327 (367)
++|+++--++.+ +.||+..|+-. +.|+.-
T Consensus 353 -TLPeaIHlL~~l-~vLDlreNpnL-VMPPKP 381 (1255)
T KOG0444|consen 353 -TLPEAIHLLPDL-KVLDLRENPNL-VMPPKP 381 (1255)
T ss_pred -echhhhhhcCCc-ceeeccCCcCc-cCCCCc
Confidence 678887767777 88888887654 555543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.7e-30 Score=231.99 Aligned_cols=331 Identities=27% Similarity=0.362 Sum_probs=238.9
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccc-cCChhhhh
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSG-SLPFDILV 80 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~ 80 (367)
.|.....|+.++.|.|....+. .+|+.++.+.+|++|.+++|.+. .+-..+..++.|+.+.+++|.+.. .+|..+|
T Consensus 24 FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF- 100 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF- 100 (1255)
T ss_pred CchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhc-
Confidence 4677888999999999988877 68888999999999999998865 334445566666666666665542 3455554
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccc-----------------------cccccCCCCCCeEE
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKV-----------------------SIDFSSLKNLWWLN 137 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-----------------------~~~l~~~~~L~~L~ 137 (367)
.+..|..|+++.|++. ..|..+...+++-.|++++|.|..+. |..+..+..|++|.
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 5666666666666665 45555555555556666665555433 33344445555555
Q ss_pred cCCCcccCcCCCCCccccccCCCCCCcEEEcccCccc-cccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEE
Q 048828 138 LEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFG-GELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALT 216 (367)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 216 (367)
|++|.+.... ...+..+++|++|.+++.+-+ ..+|..+..+.. |..++++.|.+. ..|+.+..+++|+.|+
T Consensus 180 Ls~NPL~hfQ------LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N-L~dvDlS~N~Lp-~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 180 LSNNPLNHFQ------LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN-LRDVDLSENNLP-IVPECLYKLRNLRRLN 251 (1255)
T ss_pred cCCChhhHHH------HhcCccchhhhhhhcccccchhhcCCCchhhhhh-hhhccccccCCC-cchHHHhhhhhhheec
Confidence 5555443221 234445667777777776533 246666666654 888999998887 7888888999999999
Q ss_pred ccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeecc-ccCcccccCCCCcEEEcCCCccc
Q 048828 217 MDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQG-NIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 217 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
+++|.++ +.......+.+|++|+++.|+++ ..|.++..+++|+.|.+.+|+++- .+|..++++..|+.+...+|.+.
T Consensus 252 LS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 252 LSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred cCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 9999998 54445566788999999999999 888999999999999999998863 47788999999999999999887
Q ss_pred CCcchhhhhhcccceeEeccCCeeeeccCccccCCCCCCCCCcCCccchhhhccCCCCcc
Q 048828 296 GALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFTGRRPTDSAFTEGLTLHEFATMALPEK 355 (367)
Q Consensus 296 ~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 355 (367)
.+|++++.+..+ +.|.++.|.+. ++|+.+.-+..+-.+ .++..+...+|++
T Consensus 330 -lVPEglcRC~kL-~kL~L~~NrLi-TLPeaIHlL~~l~vL------DlreNpnLVMPPK 380 (1255)
T KOG0444|consen 330 -LVPEGLCRCVKL-QKLKLDHNRLI-TLPEAIHLLPDLKVL------DLRENPNLVMPPK 380 (1255)
T ss_pred -cCchhhhhhHHH-HHhccccccee-echhhhhhcCCccee------eccCCcCccCCCC
Confidence 899999999988 99999999987 899977666554333 3334444445544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=4.7e-28 Score=205.69 Aligned_cols=154 Identities=31% Similarity=0.424 Sum_probs=104.6
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccC
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 243 (367)
..+++++|++. ++|..+..+......+.+++|.+. ..|..++.+++|..|++++|.+. ..|..++++..|+.|+++.
T Consensus 391 t~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 391 TSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred EEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence 34444444444 444444433332333344444333 55666677788888888888776 6666677777788888888
Q ss_pred ccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeecc
Q 048828 244 NFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSL 323 (367)
Q Consensus 244 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~ 323 (367)
|++. ..|.++.....++.+-.++|++....+..+..+.+|..|++.+|.+. .+|..++.+.++ +.|.++||+|. .
T Consensus 468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL-~hLeL~gNpfr--~ 542 (565)
T KOG0472|consen 468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL-RHLELDGNPFR--Q 542 (565)
T ss_pred cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce-eEEEecCCccC--C
Confidence 8877 67777666677777777778887655566778888888888888887 778888777777 88888888885 4
Q ss_pred Cc
Q 048828 324 PL 325 (367)
Q Consensus 324 p~ 325 (367)
|.
T Consensus 543 Pr 544 (565)
T KOG0472|consen 543 PR 544 (565)
T ss_pred CH
Confidence 44
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=3.4e-27 Score=200.47 Aligned_cols=205 Identities=31% Similarity=0.455 Sum_probs=137.0
Q ss_pred CCCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 1 QLPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 1 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
++|..+..+..++.++.++|.+. ..++.+..+..++.++..+|.+. ..|..+.++.++..+++.+|.+. ..|+....
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~ 181 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA 181 (565)
T ss_pred hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH
Confidence 46777777777777777777776 56666777777777777777776 56666777777777777777776 66666654
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCC
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNC 160 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
+..|++|+...|.+. .+|..++.+.+|..|++..|++. ..| .|.++..|+++++..|++....+ ....++
T Consensus 182 -m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpa------e~~~~L 251 (565)
T KOG0472|consen 182 -MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPA------EHLKHL 251 (565)
T ss_pred -HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHH------HHhccc
Confidence 777888887777776 67777888888888888888776 334 56777777777777666654333 234456
Q ss_pred CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcc
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQL 222 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 222 (367)
+++..|++.+|.+. +.|..+.-+-. ++.+++++|.++ ..|..++++ .|+.|.+.+|++
T Consensus 252 ~~l~vLDLRdNklk-e~Pde~clLrs-L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLK-EVPDEICLLRS-LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccceeeeccccccc-cCchHHHHhhh-hhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 66666666666666 55655554432 666666666665 344445555 555555555543
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2e-22 Score=205.30 Aligned_cols=319 Identities=19% Similarity=0.220 Sum_probs=182.2
Q ss_pred chhccCCCCcEEEccCccc------CCCCccccCCCC-CCcEEEccCccccCCcchhccCCCCcceeecccccccccCCh
Q 048828 4 DFIGNLSALGILLIRWNSL------GGQIPTTLGLLR-NLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPF 76 (367)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 76 (367)
++|++|++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..| ...+|+.|+++++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 4577788888887765432 223444454443 4777777776665 445544 3566777777776665 5554
Q ss_pred hhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccc
Q 048828 77 DILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTS 156 (367)
Q Consensus 77 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 156 (367)
.+ ..+++|+.|+++++.....+|. +..+++|++|++++|......|..+..+++|++|++++|..-.. ...
T Consensus 629 ~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~-------Lp~ 699 (1153)
T PLN03210 629 GV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI-------LPT 699 (1153)
T ss_pred cc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc-------cCC
Confidence 43 4566777777766543324443 56666777777766655445566666667777777766532111 011
Q ss_pred cCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCcc------------------------------c
Q 048828 157 LTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPG------------------------------I 206 (367)
Q Consensus 157 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~------------------------------l 206 (367)
..++++|+.|++++|.....+|. ...+++.|+++++.+.. +|.. .
T Consensus 700 ~i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 700 GINLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred cCCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhh
Confidence 11455666666666543333332 12235555555555432 2211 1
Q ss_pred cCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcE
Q 048828 207 RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLIS 286 (367)
Q Consensus 207 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 286 (367)
...++|++|++++|......|..+..+++|+.|++++|...+.+|... .+++|+.|++++|......|.. ..+|+.
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCE
Confidence 123466677777766555566666777777777777764333445444 5667777777776544333322 356777
Q ss_pred EEcCCCcccCCcchhhhhhcccceeEeccCCe-eeeccCccccCCCCCCCCCcCCccchhh
Q 048828 287 FRASHNKLTGALPYQLLSITTLSLYLDLSYNL-LNGSLPLQMFTGRRPTDSAFTEGLTLHE 346 (367)
Q Consensus 287 L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~-i~~~~p~~~~~~~~~~~~~~~~~~~l~~ 346 (367)
|++++|.+. .+|..+..++.+ ++|++++|+ +. .+|........+..+.+.++..+..
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~L-~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSNL-SFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCCC-CEEECCCCCCcC-ccCcccccccCCCeeecCCCccccc
Confidence 777777776 677777677666 777777743 44 5666655555555545555544443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.1e-22 Score=207.12 Aligned_cols=301 Identities=20% Similarity=0.229 Sum_probs=226.6
Q ss_pred CccccCCCCCCcEEEccCcc------ccCCcchhccCCC-CcceeecccccccccCChhhhhCCCCccEEEccCCcceee
Q 048828 26 IPTTLGLLRNLVYLNVAENQ------FSGMFPRWICNIS-SLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGS 98 (367)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~------i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 98 (367)
...+|..+++|+.|.+..+. +...+|..|..++ +|+.|.+.++.+. .+|..+ .+.+|++|+++++.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence 44568899999999997653 2234566666654 6999999999987 888765 5789999999999987 6
Q ss_pred CcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccC
Q 048828 99 IPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELP 178 (367)
Q Consensus 99 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 178 (367)
++..+..+++|+.++++++......| .+..+++|++|++++|.... ..+..+..+++|+.|++++|.....+|
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~------~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV------ELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc------ccchhhhccCCCCEEeCCCCCCcCccC
Confidence 78888999999999999886544555 47889999999999986422 334577889999999999986555677
Q ss_pred hhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccc----------------------------
Q 048828 179 HSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVI---------------------------- 230 (367)
Q Consensus 179 ~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---------------------------- 230 (367)
..+ . ..+|+.|++++|......|.. .++|++|++++|.+. ..|..+
T Consensus 699 ~~i-~-l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 699 TGI-N-LKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CcC-C-CCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchh
Confidence 654 2 345999999998655455543 467889999998876 333221
Q ss_pred --cCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhccc
Q 048828 231 --GELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTL 308 (367)
Q Consensus 231 --~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~l 308 (367)
...++|+.|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|...+.+|... ..+
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL 848 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TNI 848 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---ccc
Confidence 113578888888887666778888889999999999886555666555 68899999999986655666432 234
Q ss_pred ceeEeccCCeeeeccCccccCCCCCCCCCcCCccchhhhcc
Q 048828 309 SLYLDLSYNLLNGSLPLQMFTGRRPTDSAFTEGLTLHEFAT 349 (367)
Q Consensus 309 l~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (367)
++|++++|.|+ .+|..+.....+..+...+++.+..++.
T Consensus 849 -~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 849 -SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred -CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 89999999998 8999888877777776666666666544
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-24 Score=184.23 Aligned_cols=290 Identities=19% Similarity=0.183 Sum_probs=195.2
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeeccc-ccccccCChhhhh
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTV-NRFSGSLPFDILV 80 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~ 80 (367)
||..+. +.-..|+|..|.|....+.+|+.+++|+.||+++|.|+.+.|++|.++++|-.|.+.+ |+|+ .++...|.
T Consensus 61 VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~ 137 (498)
T KOG4237|consen 61 VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFG 137 (498)
T ss_pred CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhh
Confidence 444444 4667899999999988889999999999999999999999999999999998777665 8998 99999999
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCc------ccCcCCCCCccc
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNN------LGMGTANDLDFV 154 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~------~~~~~~~~~~~~ 154 (367)
++..|+.|.+.-|++..+..++|..++++..|.+..|.+..+.-..|..+..++.+.+..|. +.+.....-...
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 99999999999999887777889999999999999999987666678888899988886554 221111100111
Q ss_pred cccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCccccc-CCccccCCCCCcEEEccCCcccccccccccCc
Q 048828 155 TSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGT-IPPGIRNLVNLVALTMDSNQLHGTIPDVIGEL 233 (367)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 233 (367)
..++.........+.+..+...-+..+......+..-..+.+..... ....|..+++|++|++++|.++...+.+|.+.
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 22222233333333333333222222222211111111111211112 22346666777777777777766666666666
Q ss_pred cCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcc
Q 048828 234 KNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKL 294 (367)
Q Consensus 234 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 294 (367)
.+++.|.|..|++..+-...|..+..|+.|++.+|+|+...|.+|....+|.+|.+-.|++
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 7777777777776655555666666777777777777666666666666666666666544
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=7.6e-21 Score=181.43 Aligned_cols=265 Identities=26% Similarity=0.347 Sum_probs=195.5
Q ss_pred CCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEE
Q 048828 10 SALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELG 89 (367)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 89 (367)
..-..|+++++.+. .+|..+. ++|+.|++++|.++ .+|. ..++|++|++++|.++ .+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 34567889988887 4666554 47899999999887 4554 2578999999999887 6663 357889999
Q ss_pred ccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcc
Q 048828 90 VGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLY 169 (367)
Q Consensus 90 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 169 (367)
+++|.+. .+|.. ..+|+.|++++|.+... |. .+++|++|++++|++..... ...+|+.|.+.
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----------lp~~L~~L~Ls 330 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----------LPSELCKLWAY 330 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----------Ccccccccccc
Confidence 9998877 45543 25688899999988743 32 34789999999988764321 12467788888
Q ss_pred cCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcccccc
Q 048828 170 DNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGS 249 (367)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 249 (367)
+|.+. .+|. .+.+|+.|++++|++.. +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|++++
T Consensus 331 ~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~- 396 (788)
T PRK15387 331 NNQLT-SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS- 396 (788)
T ss_pred cCccc-cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-
Confidence 88887 4553 33468899999998884 4432 357888889998887 45543 3578899999998884
Q ss_pred CCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccc
Q 048828 250 IPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQM 327 (367)
Q Consensus 250 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~ 327 (367)
.|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|..++.+..+ +.|++++|++++..|..+
T Consensus 397 LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L-~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 397 LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCC-CeEECCCCCCCchHHHHH
Confidence 4432 2678899999998884 5543 356888999999988 788888888877 899999999987777655
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=7.4e-23 Score=190.60 Aligned_cols=87 Identities=30% Similarity=0.400 Sum_probs=65.5
Q ss_pred hccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
..+.-+|+.|++++|++. ..|..+..+++|+.|++++|.|. ..|....++.+|+++.|.+|... ..|.++ ..+.+|
T Consensus 41 ~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl 116 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNL 116 (1081)
T ss_pred hhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhhhcc
Confidence 445556888888888776 56666777788888888888877 56677777788888888888776 667665 577888
Q ss_pred cEEEccCCcce
Q 048828 86 KELGVGGNNFV 96 (367)
Q Consensus 86 ~~L~l~~~~~~ 96 (367)
++|+++.|.+.
T Consensus 117 ~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 117 QYLDLSFNHFG 127 (1081)
T ss_pred cccccchhccC
Confidence 88888877765
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=6.3e-20 Score=175.19 Aligned_cols=254 Identities=26% Similarity=0.312 Sum_probs=198.8
Q ss_pred CCCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 1 QLPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 1 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
+||+.+. ++|+.|++.+|.+.. +|. ..++|++|++++|.++ .+|.. .++|+.|++++|.+. .+|.
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~---- 279 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPA---- 279 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhh----
Confidence 3677765 489999999999984 443 2578999999999998 44542 468999999999987 6664
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCC
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNC 160 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
.+.+|+.|++++|.++ .+|.. .++|+.|++++|.+... +. ...+|+.|++++|.++.... -.
T Consensus 280 lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~LP~----------lp 341 (788)
T PRK15387 280 LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLPT----------LP 341 (788)
T ss_pred chhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CC---CcccccccccccCccccccc----------cc
Confidence 2468999999999988 45542 47899999999998854 32 23568899999998863221 12
Q ss_pred CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEE
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLF 240 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 240 (367)
.+|+.|++++|.+. .+|. .+.+++.|++++|.+.. +|.. ..+|+.|++++|.++ ..|.. .++|+.|+
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~Ld 408 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELM 408 (788)
T ss_pred cccceEecCCCccC-CCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEE
Confidence 57999999999998 5554 23468899999999884 5543 357999999999998 44543 36899999
Q ss_pred ccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhh
Q 048828 241 LFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSI 305 (367)
Q Consensus 241 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 305 (367)
+++|++++ +|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+
T Consensus 409 LS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 409 VSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred ccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 99999984 5543 357889999999999 678889999999999999999998888877443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-22 Score=187.47 Aligned_cols=279 Identities=28% Similarity=0.368 Sum_probs=151.5
Q ss_pred EEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCc
Q 048828 15 LLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNN 94 (367)
Q Consensus 15 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 94 (367)
|+|.+|.+. ...+..+++|+.+....|++... -..-++|+.|+..+|.+. .....+ ...+|++++++.+.
T Consensus 183 ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 183 LDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNN 252 (1081)
T ss_pred eecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcce-eecccc--ccccceeeecchhh
Confidence 555555543 11233444444444444443311 112345555555555554 222211 24566677777666
Q ss_pred ceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccc
Q 048828 95 FVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFG 174 (367)
Q Consensus 95 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 174 (367)
+. .+|..+..+.+|+.++..+|.+. ..+..+....+|+.|....|.+.... ......++|++|++..|.+.
T Consensus 253 l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip-------~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 253 LS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP-------PFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred hh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC-------Ccccccceeeeeeehhcccc
Confidence 66 45566666777777777666663 44445555566666666666554222 23444667777777777665
Q ss_pred cccChhhhhhcc-------------------------cceEEEecCCcccccCCccccCCCCCcEEEccCCccccccccc
Q 048828 175 GELPHSIANLSS-------------------------TMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDV 229 (367)
Q Consensus 175 ~~~~~~~~~~~~-------------------------~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 229 (367)
++|+.+..... .++.|++.+|.++...-..+.++.+|+.|++++|++.......
T Consensus 324 -~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 324 -SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred -ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence 55554433222 2444555555555444444556666666666666665333344
Q ss_pred ccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccC-Ccchhhhhhccc
Q 048828 230 IGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTG-ALPYQLLSITTL 308 (367)
Q Consensus 230 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~~l 308 (367)
+.+++.|+.|++|||+++ .+|.....++.|++|...+|.+. ..| .+.+++.|+.+|++-|.++. .+|..+.. +.+
T Consensus 403 ~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~L 478 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNL 478 (1081)
T ss_pred HhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-ccc
Confidence 555666666666666666 45555556666666666666665 344 55666666666666666652 22222221 444
Q ss_pred ceeEeccCCe
Q 048828 309 SLYLDLSYNL 318 (367)
Q Consensus 309 l~~L~l~~n~ 318 (367)
++||++||.
T Consensus 479 -kyLdlSGN~ 487 (1081)
T KOG0618|consen 479 -KYLDLSGNT 487 (1081)
T ss_pred -ceeeccCCc
Confidence 667776665
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=1.7e-22 Score=171.64 Aligned_cols=286 Identities=20% Similarity=0.182 Sum_probs=165.6
Q ss_pred CCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccC-CcceeeCcccccCCCCCcEEe
Q 048828 35 NLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG-NNFVGSIPDSLSNASNLERLD 113 (367)
Q Consensus 35 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 113 (367)
.-..+++..|+|+.+.+.+|+.+++|+.|+|++|.|+ .|.+..|+++++|..|-+-+ |+++..-.++|.++..++.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3445555555555555555555555555555555555 55555555555555443333 555533334455555555555
Q ss_pred CCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccc------------cChhh
Q 048828 114 LPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGE------------LPHSI 181 (367)
Q Consensus 114 l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------~~~~~ 181 (367)
+.-|++......+|+.++++..|.+..|.+..... ..+..+..++.+.+..|.+... .+..+
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~------~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK------GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhcc------ccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 55555555555555555555555555555433222 1333344444444444431100 00000
Q ss_pred hhhcccceEEEecCCcccccCCccccCC-CCCcEEEccCCccccccc-ccccCccCCcEEEccCccccccCCccccCCCC
Q 048828 182 ANLSSTMIQFSIGGNQISGTIPPGIRNL-VNLVALTMDSNQLHGTIP-DVIGELKNLQVLFLFRNFLQGSIPPSLGNLTK 259 (367)
Q Consensus 182 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 259 (367)
. ..+......+.+.++....+..|... ..+..-..+.+...+..| ..|..+++|++|++++|+++.+-+.+|.....
T Consensus 221 s-garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 221 S-GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred c-cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 0 00001111111112221222222221 111111112222222333 46888999999999999999888889999999
Q ss_pred CCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccC
Q 048828 260 LADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFT 329 (367)
Q Consensus 260 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~ 329 (367)
++.|.+..|++.......|..+..|+.|+|.+|+|+...|.+|.....+ .+|++-.|++.+.+-..|..
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l-~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL-STLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee-eeeehccCcccCccchHHHH
Confidence 9999999999987777789999999999999999998888888777777 99999999998877665543
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=9.7e-21 Score=168.49 Aligned_cols=281 Identities=23% Similarity=0.261 Sum_probs=146.9
Q ss_pred EEEccCcccCC-CCccccCCCCCCcEEEccCccccC----CcchhccCCCCcceeecccccccccCC------hhhhhCC
Q 048828 14 ILLIRWNSLGG-QIPTTLGLLRNLVYLNVAENQFSG----MFPRWICNISSLELIYLTVNRFSGSLP------FDILVNL 82 (367)
Q Consensus 14 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~~~ 82 (367)
.|+|+.+.+.+ .....+..+.+|+.++++++.++. .++..+...+.+++++++++.+. ..+ ...+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG-RIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC-CcchHHHHHHHHHHhc
Confidence 45666666652 233334556667777777777642 23444555666777777766554 111 1123345
Q ss_pred CCccEEEccCCcceeeCcccccCC---CCCcEEeCCCCccccc----ccccccCC-CCCCeEEcCCCcccCcCCCCCccc
Q 048828 83 PNLKELGVGGNNFVGSIPDSLSNA---SNLERLDLPGNQFKGK----VSIDFSSL-KNLWWLNLEQNNLGMGTANDLDFV 154 (367)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~----~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 154 (367)
++|++|++++|.+....+..+..+ ++|++|++++|.+... ....+..+ ++|++|++++|.++..... ...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~~~ 158 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE--ALA 158 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--HHH
Confidence 566666666665543223222222 2366666666555421 11123333 5555555555554422111 112
Q ss_pred cccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccc----cccc
Q 048828 155 TSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTI----PDVI 230 (367)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~ 230 (367)
..+..+++|++|++++|.+.+.... ..+..+..+++|++|++++|.+++.. ...+
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIR---------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHH---------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 2233344455555555444321111 11223344567777777777765332 2344
Q ss_pred cCccCCcEEEccCccccccCCccc-----cCCCCCCeEEccCCeecc----ccCcccccCCCCcEEEcCCCcccCC----
Q 048828 231 GELKNLQVLFLFRNFLQGSIPPSL-----GNLTKLADLALSFNNLQG----NIPSSLGNCQNLISFRASHNKLTGA---- 297 (367)
Q Consensus 231 ~~~~~L~~L~l~~~~i~~~~~~~l-----~~~~~L~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~i~~~---- 297 (367)
..+++|+.|++++|.+++.....+ ...+.|+.|++++|.++. .....+..+++|+++++++|.+++.
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 556778888888877764222111 123678888888887752 2233455567888888888888744
Q ss_pred cchhhhhh-cccceeEeccCCee
Q 048828 298 LPYQLLSI-TTLSLYLDLSYNLL 319 (367)
Q Consensus 298 ~~~~~~~~-~~ll~~L~l~~n~i 319 (367)
+...+... +.+ +++++.+|++
T Consensus 298 ~~~~~~~~~~~~-~~~~~~~~~~ 319 (319)
T cd00116 298 LAESLLEPGNEL-ESLWVKDDSF 319 (319)
T ss_pred HHHHHhhcCCch-hhcccCCCCC
Confidence 33333333 334 7777777654
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=1e-20 Score=168.32 Aligned_cols=256 Identities=25% Similarity=0.283 Sum_probs=145.1
Q ss_pred EEccCcccc-CCcchhccCCCCcceeecccccccccCC---hhhhhCCCCccEEEccCCccee------eCcccccCCCC
Q 048828 39 LNVAENQFS-GMFPRWICNISSLELIYLTVNRFSGSLP---FDILVNLPNLKELGVGGNNFVG------SIPDSLSNASN 108 (367)
Q Consensus 39 L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~------~~~~~l~~l~~ 108 (367)
|++.++.+. ......+..+..|+.++++++.+.+... ...+...+++++++++++.+.. .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555554 2333444555566666666666532110 1122344556666666554431 11223444555
Q ss_pred CcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCcccccc----Chhhhhh
Q 048828 109 LERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGEL----PHSIANL 184 (367)
Q Consensus 109 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~ 184 (367)
|++|++++|.+....+..+..+.+ . ++|++|++++|.+.+.. ...+...
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~--------------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~ 135 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLR--------------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDL 135 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhc--------------------------c-CcccEEEeeCCccchHHHHHHHHHHHhC
Confidence 555555555554322222222222 1 23444444444433111 1111122
Q ss_pred cccceEEEecCCcccc----cCCccccCCCCCcEEEccCCcccccc----cccccCccCCcEEEccCccccccC----Cc
Q 048828 185 SSTMIQFSIGGNQISG----TIPPGIRNLVNLVALTMDSNQLHGTI----PDVIGELKNLQVLFLFRNFLQGSI----PP 252 (367)
Q Consensus 185 ~~~L~~l~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~----~~ 252 (367)
+.+++.+++++|.+.. ..+..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++.. ..
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 1335555555555542 12334667788999999999987432 233455679999999999987432 34
Q ss_pred cccCCCCCCeEEccCCeeccccCcccc-----cCCCCcEEEcCCCcccCC----cchhhhhhcccceeEeccCCeeeec
Q 048828 253 SLGNLTKLADLALSFNNLQGNIPSSLG-----NCQNLISFRASHNKLTGA----LPYQLLSITTLSLYLDLSYNLLNGS 322 (367)
Q Consensus 253 ~l~~~~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~l~~n~i~~~----~~~~~~~~~~ll~~L~l~~n~i~~~ 322 (367)
.+..+++|+.|++++|.+++.....+. ..+.|++|++++|.+++. +...+..++.+ +++++++|.++..
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L-~~l~l~~N~l~~~ 293 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL-LELDLRGNKFGEE 293 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCc-cEEECCCCCCcHH
Confidence 556789999999999998753222222 247999999999999732 33344445556 9999999999743
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=3.2e-18 Score=164.45 Aligned_cols=117 Identities=21% Similarity=0.382 Sum_probs=52.3
Q ss_pred CcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEcc
Q 048828 12 LGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVG 91 (367)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (367)
..+|+++++.+.. +|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.+. .+|..+ ..+|+.|+++
T Consensus 180 ~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEECc
Confidence 4455555554442 333222 24555555555554 2333222 34555555555554 444332 2345555555
Q ss_pred CCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCccc
Q 048828 92 GNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLG 144 (367)
Q Consensus 92 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~ 144 (367)
+|.+. .+|..+. .+|+.|++++|.+.. .|..+ .++|++|++++|+++
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIR 296 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccc
Confidence 55554 3343332 245555555555442 22222 134555555555443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=6.2e-18 Score=162.51 Aligned_cols=247 Identities=26% Similarity=0.392 Sum_probs=186.4
Q ss_pred CCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEe
Q 048828 34 RNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLD 113 (367)
Q Consensus 34 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 113 (367)
.+...|+++++.++ .+|..+. +.|+.|++++|.+. .+|..++ .+|++|++++|.+. .+|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 35788999998887 4565443 57999999999998 7887653 58999999999987 5666553 4799999
Q ss_pred CCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEe
Q 048828 114 LPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSI 193 (367)
Q Consensus 114 l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 193 (367)
+++|.+. .+|..+ ..+|++|++++|+++.... .+ +++|+.|++++|.+. .+|..+ +.+++.|++
T Consensus 248 Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~L~~LP~-------~l--~~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~L 311 (754)
T PRK15370 248 LSINRIT-ELPERL--PSALQSLDLFHNKISCLPE-------NL--PEELRYLSVYDNSIR-TLPAHL---PSGITHLNV 311 (754)
T ss_pred CcCCccC-cCChhH--hCCCCEEECcCCccCcccc-------cc--CCCCcEEECCCCccc-cCcccc---hhhHHHHHh
Confidence 9999987 345444 3589999999998864321 22 258999999999887 556543 235888999
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccc
Q 048828 194 GGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGN 273 (367)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~ 273 (367)
++|.+.. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .
T Consensus 312 s~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 312 QSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-N 381 (754)
T ss_pred cCCcccc-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-C
Confidence 9998884 44433 368999999999988 4555443 78999999999998 5665553 68999999999998 4
Q ss_pred cCcccccCCCCcEEEcCCCcccCCcchhhhhh----cccceeEeccCCeee
Q 048828 274 IPSSLGNCQNLISFRASHNKLTGALPYQLLSI----TTLSLYLDLSYNLLN 320 (367)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~----~~ll~~L~l~~n~i~ 320 (367)
+|..+. ..|+.|++++|++. .+|..+..+ +.+ ..|++.+|+++
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l-~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQP-TRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCc-cEEEeeCCCcc
Confidence 555543 46899999999998 677665443 445 78999999985
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=3.1e-17 Score=124.57 Aligned_cols=164 Identities=29% Similarity=0.488 Sum_probs=103.6
Q ss_pred cCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCcccc
Q 048828 128 SSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIR 207 (367)
Q Consensus 128 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 207 (367)
-.+..++.|.+++|.++... ..++.+.+|+.|++.+|+++ +.|..+..++. ++.|+++.|++. ..|..|.
T Consensus 30 f~~s~ITrLtLSHNKl~~vp-------pnia~l~nlevln~~nnqie-~lp~~issl~k-lr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVP-------PNIAELKNLEVLNLSNNQIE-ELPTSISSLPK-LRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred cchhhhhhhhcccCceeecC-------CcHHHhhhhhhhhcccchhh-hcChhhhhchh-hhheecchhhhh-cCccccC
Confidence 34555666667776665333 35556666777777777766 66666666665 666666666655 5666666
Q ss_pred CCCCCcEEEccCCcccc-cccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcE
Q 048828 208 NLVNLVALTMDSNQLHG-TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLIS 286 (367)
Q Consensus 208 ~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 286 (367)
.++.|+.|++.+|.+.+ ..|..|..++.|+.|.+++|.+. ..|...+.+.+|+.|.+..|.+. .+|..++.+..|++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 66666666666666542 34555556666666666666666 56666666666666666666665 45666666666666
Q ss_pred EEcCCCcccCCcchhhhh
Q 048828 287 FRASHNKLTGALPYQLLS 304 (367)
Q Consensus 287 L~l~~n~i~~~~~~~~~~ 304 (367)
|.+.+|+++ .+|..+..
T Consensus 178 lhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELAN 194 (264)
T ss_pred Hhcccceee-ecChhhhh
Confidence 666666666 55555444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=6.2e-17 Score=122.92 Aligned_cols=170 Identities=29% Similarity=0.409 Sum_probs=140.5
Q ss_pred cccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCcc
Q 048828 155 TSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELK 234 (367)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 234 (367)
..+..+..++.|.+++|.+. .+|..+..+.. ++.|++.+|++. .+|..++.+++|+.|++.-|++. ..|..|+.++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~n-levln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKN-LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCCcHHHhhh-hhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 34455677788888888887 67777777765 888999999888 67778889999999999988887 7788888899
Q ss_pred CCcEEEccCccccc-cCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEe
Q 048828 235 NLQVLFLFRNFLQG-SIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLD 313 (367)
Q Consensus 235 ~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~ 313 (367)
.|+.||+.+|.+.+ ..|..|-.+..|+.|++++|.+. .+|..++++.+|+.|.+++|.+. ++|..+..+..+ ++|.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l-relh 179 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL-RELH 179 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH-HHHh
Confidence 99999999888764 46777777788888999999888 67888889999999999999887 788888888777 8899
Q ss_pred ccCCeeeeccCccccCCCC
Q 048828 314 LSYNLLNGSLPLQMFTGRR 332 (367)
Q Consensus 314 l~~n~i~~~~p~~~~~~~~ 332 (367)
+.+|.++ .+|+++.+...
T Consensus 180 iqgnrl~-vlppel~~l~l 197 (264)
T KOG0617|consen 180 IQGNRLT-VLPPELANLDL 197 (264)
T ss_pred cccceee-ecChhhhhhhh
Confidence 9999998 88888877543
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.50 E-value=1.4e-15 Score=128.08 Aligned_cols=193 Identities=18% Similarity=0.210 Sum_probs=128.4
Q ss_pred cccCCCCCcEEeCCCCccccccccc----ccCCCCCCeEEcCCCcccCcCCCCCc-------cccccCCCCCCcEEEccc
Q 048828 102 SLSNASNLERLDLPGNQFKGKVSID----FSSLKNLWWLNLEQNNLGMGTANDLD-------FVTSLTNCSSLKSLSLYD 170 (367)
Q Consensus 102 ~l~~l~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~ 170 (367)
++..+++|+++++|.|.+....+.. +.++..|++|+|.+|.+...+...+. ........+.|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 4556677777777777665444433 35677778888877777655443211 223445667888888888
Q ss_pred CccccccChh----hhhhcccceEEEecCCcccc----cCCccccCCCCCcEEEccCCccccc----ccccccCccCCcE
Q 048828 171 NQFGGELPHS----IANLSSTMIQFSIGGNQISG----TIPPGIRNLVNLVALTMDSNQLHGT----IPDVIGELKNLQV 238 (367)
Q Consensus 171 ~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~ 238 (367)
|.+....... +... +.++.+.++.|.|.. ....++.+|++|+.|++.+|.++.. +...++.+++|+.
T Consensus 167 Nrlen~ga~~~A~~~~~~-~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSH-PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cccccccHHHHHHHHHhc-cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 8776433222 2222 347778887776653 2345678889999999999888643 3445667788999
Q ss_pred EEccCccccccCCccc-----cCCCCCCeEEccCCeeccccC----cccccCCCCcEEEcCCCccc
Q 048828 239 LFLFRNFLQGSIPPSL-----GNLTKLADLALSFNNLQGNIP----SSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 239 L~l~~~~i~~~~~~~l-----~~~~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~i~ 295 (367)
|++++|.+.......+ ...|+|+.+.+.+|.|+.... .++...|.|..|+|++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999998876544333 236888999999988875322 23444688888888888883
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.44 E-value=5.1e-15 Score=124.71 Aligned_cols=140 Identities=17% Similarity=0.182 Sum_probs=81.2
Q ss_pred CCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccC----hhhhhhcccceEEEecCCcccc----
Q 048828 129 SLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELP----HSIANLSSTMIQFSIGGNQISG---- 200 (367)
Q Consensus 129 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~---- 200 (367)
+.++|+++....|++...++. .....+..++.|+.+.+..|.+..... ..+.. .++|+.|++.+|.++.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~--~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGAT--ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred CCcceEEEEeeccccccccHH--HHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHH
Confidence 345555555555555433332 233344445555555555555442211 11122 2235556665555442
Q ss_pred cCCccccCCCCCcEEEccCCcccccccccc-----cCccCCcEEEccCccccccC----CccccCCCCCCeEEccCCeec
Q 048828 201 TIPPGIRNLVNLVALTMDSNQLHGTIPDVI-----GELKNLQVLFLFRNFLQGSI----PPSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~i~~~~----~~~l~~~~~L~~L~l~~n~i~ 271 (367)
.+...+..+++|++|++++|.+.+.....+ ...++|+.|.+.+|.++... ..+....|.|+.|++++|.+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 244566777888888888888865544332 34688999999999887422 223344688999999999884
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.8e-12 Score=111.40 Aligned_cols=209 Identities=22% Similarity=0.229 Sum_probs=110.2
Q ss_pred CCCCcceeecccccccccCCh-hhhhCCCCccEEEccCCcceee--CcccccCCCCCcEEeCCCCccccccccc-ccCCC
Q 048828 56 NISSLELIYLTVNRFSGSLPF-DILVNLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDLPGNQFKGKVSID-FSSLK 131 (367)
Q Consensus 56 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~ 131 (367)
++.+|+.+.+.++.+. ..+. .....+++++.|+++.|-+... +......+|+|+.|+++.|++....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4566777777776664 2221 3445677777777777655421 2233456677777777777665322221 23456
Q ss_pred CCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccC-CccccCCC
Q 048828 132 NLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTI-PPGIRNLV 210 (367)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~ 210 (367)
.|+.|.++.|.+++... ...+..+|+|+.|.+.+|.......... ..+..|+.|++++|++-... ......++
T Consensus 198 ~lK~L~l~~CGls~k~V-----~~~~~~fPsl~~L~L~~N~~~~~~~~~~-~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDV-----QWILLTFPSLEVLYLEANEIILIKATST-KILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhheEEeccCCCCHHHH-----HHHHHhCCcHHHhhhhcccccceecchh-hhhhHHhhccccCCccccccccccccccc
Confidence 67777777776654322 2344556777777777663111111111 12223666777666554221 13345666
Q ss_pred CCcEEEccCCccccc-cccc-----ccCccCCcEEEccCccccccC-CccccCCCCCCeEEccCCeec
Q 048828 211 NLVALTMDSNQLHGT-IPDV-----IGELKNLQVLFLFRNFLQGSI-PPSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 211 ~L~~L~l~~n~~~~~-~~~~-----~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~l~~n~i~ 271 (367)
.|+.|+++.+.+.+. .++. ...+++|+.|+++.|++.+.. ...+..+++|+.+.+..|.+.
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666666666666532 1211 123466666666666664221 122334456666666666554
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.9e-12 Score=112.40 Aligned_cols=163 Identities=21% Similarity=0.152 Sum_probs=86.1
Q ss_pred ccCCCCcEEEccCcccCCCCc-cccCCCCCCcEEEccCccccC--CcchhccCCCCcceeecccccccccCChhhhhCCC
Q 048828 7 GNLSALGILLIRWNSLGGQIP-TTLGLLRNLVYLNVAENQFSG--MFPRWICNISSLELIYLTVNRFSGSLPFDILVNLP 83 (367)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (367)
+++.+|+.+.|.++.+..... .....|++++.||+++|-+.. .+......+|+|+.|+++.|.+.-......-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345666777777666653322 234567777777777776542 22233445667777777776654222222222356
Q ss_pred CccEEEccCCcceee-CcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCC
Q 048828 84 NLKELGVGGNNFVGS-IPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSS 162 (367)
Q Consensus 84 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (367)
+|+.|.++.|+++.. +......+|.|+.|++.+|............+..|++|+|++|.+-..+ .......++.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~~~~~~l~~ 272 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QGYKVGTLPG 272 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----cccccccccc
Confidence 666666666666521 1122345666666666666422222233444556666666666543221 2234455566
Q ss_pred CcEEEcccCccc
Q 048828 163 LKSLSLYDNQFG 174 (367)
Q Consensus 163 L~~L~l~~~~~~ 174 (367)
|+.|.++.+++.
T Consensus 273 L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 273 LNQLNLSSTGIA 284 (505)
T ss_pred hhhhhccccCcc
Confidence 666666655554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=2.2e-11 Score=96.28 Aligned_cols=125 Identities=30% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCcEEEccCccccCCcchhcc-CCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccc-cCCCCCcEE
Q 048828 35 NLVYLNVAENQFSGMFPRWIC-NISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSL-SNASNLERL 112 (367)
Q Consensus 35 ~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L 112 (367)
++++|+++++.|+.+ +.+. .+.+|+.|++++|.+. .+.. +..+++|++|++++|.++. +...+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 344444444444421 1122 2344444444444444 2221 2334455555555554442 22222 234455555
Q ss_pred eCCCCccccccc-ccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEc
Q 048828 113 DLPGNQFKGKVS-IDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSL 168 (367)
Q Consensus 113 ~l~~n~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 168 (367)
++++|.+..... ..+..+++|++|++.+|.+..... +....+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~---YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN---YRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT---HHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh---HHHHHHHHcChhheeCC
Confidence 555554443211 223445555555555555443222 22233344555555544
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=4.5e-11 Score=117.41 Aligned_cols=276 Identities=20% Similarity=0.196 Sum_probs=173.8
Q ss_pred cCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCcc--ccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 8 NLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQ--FSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
.....+++.+.++.+. ..+.. ..+++|++|-+.++. +......+|..++.|++||+++|.-.+.+|..+ +.+.+|
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHL 597 (889)
T ss_pred chhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhh
Confidence 3456677777777765 23332 345689999998886 555666778899999999999887666888766 789999
Q ss_pred cEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcE
Q 048828 86 KELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKS 165 (367)
Q Consensus 86 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 165 (367)
|+|+++++.+. .+|..+.++.+|.+|++..+.-....+.....+.+|++|.+...... .+......+..+.+|+.
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~----~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS----NDKLLLKELENLEHLEN 672 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc----cchhhHHhhhcccchhh
Confidence 99999999998 88999999999999999988765555666777999999999766522 11223344556666666
Q ss_pred EEcccCccccccChhh---hhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccC------ccCC
Q 048828 166 LSLYDNQFGGELPHSI---ANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGE------LKNL 236 (367)
Q Consensus 166 L~l~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L 236 (367)
+....... .+...+ ..+....+.+.+..+.. ...+..+..+.+|+.|.+.++.+.+........ ++++
T Consensus 673 ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 673 LSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred heeecchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 66643332 111111 11111122333222222 244556778889999999998876433222111 2233
Q ss_pred cEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 237 QVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 237 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
..+.+.++.-. ..+......++|+.+.+..|.....+......+..++.+.+..+.+.
T Consensus 750 ~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 750 SKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 33333343222 11222233478888888888776555555555555555555555444
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=1.8e-11 Score=96.76 Aligned_cols=126 Identities=29% Similarity=0.315 Sum_probs=40.5
Q ss_pred cCCCCcEEEccCcccCCCCccccC-CCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCcc
Q 048828 8 NLSALGILLIRWNSLGGQIPTTLG-LLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLK 86 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (367)
+..++++|+|.+|.|... +.+. .+.+|+.|++++|.|+.. +.+..++.|++|++++|.+. .+...+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 344567777777776632 2233 456677777777776632 23556677777777777776 55544434567777
Q ss_pred EEEccCCcceeeC-cccccCCCCCcEEeCCCCcccccc---cccccCCCCCCeEEc
Q 048828 87 ELGVGGNNFVGSI-PDSLSNASNLERLDLPGNQFKGKV---SIDFSSLKNLWWLNL 138 (367)
Q Consensus 87 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~~~~L~~L~l 138 (367)
+|++++|.+.... -..+..+++|+.|++.+|++.... ...+..+|+|+.|+-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777665221 134556777777777777665321 122456677776654
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=1.9e-10 Score=110.57 Aligned_cols=113 Identities=35% Similarity=0.528 Sum_probs=87.5
Q ss_pred CcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCC
Q 048828 212 LVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASH 291 (367)
Q Consensus 212 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 291 (367)
++.|++++|.+.+..|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888777777778888888888888888877777788888888888888888877888888888888888888
Q ss_pred CcccCCcchhhhhhcccceeEeccCCeeeeccC
Q 048828 292 NKLTGALPYQLLSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 292 n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p 324 (367)
|++++.+|..+......+..+++.+|...|..|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888888888776543222677788776655444
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=2.5e-10 Score=104.57 Aligned_cols=198 Identities=30% Similarity=0.388 Sum_probs=129.6
Q ss_pred EEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCC-CccEEEccCCcceeeCcccccCCCCCcEEeCCC
Q 048828 38 YLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLP-NLKELGVGGNNFVGSIPDSLSNASNLERLDLPG 116 (367)
Q Consensus 38 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 116 (367)
.++...+.+. .....+..++.++.+++.++.+. .++... .... +|+.|++++|.+. .++..+..+++|+.|+++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4666666653 22333444567778888887776 665543 2342 7888888888776 4555677788888888888
Q ss_pred CcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCC
Q 048828 117 NQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGN 196 (367)
Q Consensus 117 n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 196 (367)
|++... +......+.|+.|++++|.+..... .......|+++.+++|... ..+..+..... +..+.+..+
T Consensus 173 N~l~~l-~~~~~~~~~L~~L~ls~N~i~~l~~-------~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~-l~~l~l~~n 242 (394)
T COG4886 173 NDLSDL-PKLLSNLSNLNNLDLSGNKISDLPP-------EIELLSALEELDLSNNSII-ELLSSLSNLKN-LSGLELSNN 242 (394)
T ss_pred chhhhh-hhhhhhhhhhhheeccCCccccCch-------hhhhhhhhhhhhhcCCcce-ecchhhhhccc-ccccccCCc
Confidence 877633 3333367788888888887754332 1123445788888877433 34444444443 666666666
Q ss_pred cccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCc
Q 048828 197 QISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPP 252 (367)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 252 (367)
++. ..+..+..++++++|++++|.++.... +....+++.|+++++.+....+.
T Consensus 243 ~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 243 KLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred eee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 665 336667788889999999998884433 67788899999999888754443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4.4e-11 Score=99.39 Aligned_cols=130 Identities=24% Similarity=0.278 Sum_probs=89.5
Q ss_pred CCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEE
Q 048828 160 CSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVL 239 (367)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 239 (367)
.+.|+++++++|.+. .+.+...-.+. ++.|+++.|.+..... ++.+++|+.|++++|.++ ....+-..+-++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccc-eeEEeccccceeeehh--hhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 456777888888776 55555555554 7888888887763332 677788888888888776 434444456677888
Q ss_pred EccCccccccCCccccCCCCCCeEEccCCeeccc-cCcccccCCCCcEEEcCCCcccC
Q 048828 240 FLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGN-IPSSLGNCQNLISFRASHNKLTG 296 (367)
Q Consensus 240 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~ 296 (367)
.+++|.+.+. ..++.+-+|+.||+++|+|... -...++++|.|+.+.|.+|++.+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8888877632 4566777788888888877632 22457777888888888887764
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=6.9e-10 Score=101.72 Aligned_cols=195 Identities=33% Similarity=0.495 Sum_probs=112.7
Q ss_pred eeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCC-CCcEEeCCCCcccccccccccCCCCCCeEEcCC
Q 048828 62 LIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNAS-NLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQ 140 (367)
Q Consensus 62 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 140 (367)
.++...+.+..... . ...++.++.|++.++.+. .++....... +|+.|++++|.+.. .+..++.+++|+.|+++.
T Consensus 97 ~l~~~~~~~~~~~~-~-~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS-E-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch-h-hhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 35555555421111 1 234566777777777776 4455455553 77777777777663 334566777777777777
Q ss_pred CcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCC
Q 048828 141 NNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSN 220 (367)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 220 (367)
|++..... .....+.|+.|++++|.+. .+|.... .+..++.+.+++|.+. ..+..+..+.++..+.+..|
T Consensus 173 N~l~~l~~-------~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 173 NDLSDLPK-------LLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred chhhhhhh-------hhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCc
Confidence 77653322 2225567777777777766 4454332 2223666666666433 24444556666666666666
Q ss_pred cccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccc
Q 048828 221 QLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGN 273 (367)
Q Consensus 221 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~ 273 (367)
++. ..+..+..+++++.|++++|.++.... ++...+++.++++++.+...
T Consensus 243 ~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 243 KLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred eee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 655 224445556666777777776663322 55666677777776666543
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=1.7e-11 Score=110.08 Aligned_cols=196 Identities=23% Similarity=0.367 Sum_probs=159.8
Q ss_pred CCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhc
Q 048828 106 ASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLS 185 (367)
Q Consensus 106 l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 185 (367)
+..-...+++.|++. ..|..+..+..|+.+.++.|.+. .++..++++..|+.++++.|++. ..|..+..++
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-------TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP 144 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-------ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence 444456778888887 66777778888888889888775 34467888899999999999988 7888888775
Q ss_pred ccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEc
Q 048828 186 STMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLAL 265 (367)
Q Consensus 186 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l 265 (367)
|+.+.+++|+++ .+|..+...+.|..|+.+.|.+. ..+..++++.+|+.|.+..|++.. .|.-+.. -.|.+||+
T Consensus 145 --Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDf 218 (722)
T KOG0532|consen 145 --LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDF 218 (722)
T ss_pred --ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-Cceeeeec
Confidence 899999999988 67777888899999999999998 566668889999999999999984 4554554 46899999
Q ss_pred cCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhh--cccceeEeccCCe
Q 048828 266 SFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSI--TTLSLYLDLSYNL 318 (367)
Q Consensus 266 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~ll~~L~l~~n~ 318 (367)
+.|++. .+|-.|.+|..|+.|-|.+|++. .-|..+|.. -..-+||+..-+.
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999999 78999999999999999999998 777776653 2232788888773
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=2.5e-10 Score=112.28 Aligned_cols=107 Identities=27% Similarity=0.259 Sum_probs=70.7
Q ss_pred CCCCcEEEccCcc--cCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCcc
Q 048828 9 LSALGILLIRWNS--LGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLK 86 (367)
Q Consensus 9 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (367)
++.|++|-+..|. +.......|..++.|+.||+++|.--+.+|..++++-+|++|+++++.+. .+|.++ .++..|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL-GNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH-HHHHhhh
Confidence 4467777776664 44344445666777777777776544567777777777777777777776 677665 5677777
Q ss_pred EEEccCCcceeeCcccccCCCCCcEEeCCCC
Q 048828 87 ELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117 (367)
Q Consensus 87 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 117 (367)
+|++..+......+.....+.+|++|.+...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeecc
Confidence 7777766654444555555777777777554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=2.3e-11 Score=109.18 Aligned_cols=213 Identities=23% Similarity=0.341 Sum_probs=164.4
Q ss_pred eecccccccccCChhhhh-CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCC
Q 048828 63 IYLTVNRFSGSLPFDILV-NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQN 141 (367)
Q Consensus 63 L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~ 141 (367)
|.|++-.+. .+|...++ .+..-...+++.|.+. .+|..+..+..|+.+.+..|.+. .++..+.++..|..++++.|
T Consensus 55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc
Confidence 344444444 44443322 2344556788999988 78888888889999999999887 66788999999999999999
Q ss_pred cccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCc
Q 048828 142 NLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQ 221 (367)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 221 (367)
+++... ..++.++ |+.|.+++|.++ .+|..+. ....+..++.+.|.+. .+|.-+..+.+|+.|.+..|.
T Consensus 132 qlS~lp-------~~lC~lp-Lkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 132 QLSHLP-------DGLCDLP-LKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred hhhcCC-------hhhhcCc-ceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhh
Confidence 886443 3455554 899999999988 8888888 4445999999999988 466668899999999999999
Q ss_pred ccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccC---CCCcEEEcCCCc
Q 048828 222 LHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNC---QNLISFRASHNK 293 (367)
Q Consensus 222 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~---~~L~~L~l~~n~ 293 (367)
+. ..|..+..++ |..||++.|++. .+|..|.+|+.|+.|-|.+|.+. ..|..+.-. .=-|+|+..-|+
T Consensus 201 l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 201 LE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 98 5555566544 999999999999 89999999999999999999998 456554333 234567776664
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.95 E-value=1.2e-10 Score=95.49 Aligned_cols=239 Identities=18% Similarity=0.195 Sum_probs=149.8
Q ss_pred CCCCcceeecccccccccCChhh---hhCCCCccEEEccCCcce---e-------eCcccccCCCCCcEEeCCCCccccc
Q 048828 56 NISSLELIYLTVNRFSGSLPFDI---LVNLPNLKELGVGGNNFV---G-------SIPDSLSNASNLERLDLPGNQFKGK 122 (367)
Q Consensus 56 ~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~-------~~~~~l~~l~~L~~L~l~~n~l~~~ 122 (367)
.+..+..+++++|.+..+....+ ++.-.+|+..+++.-... . .+-.++.+||+|+.++++.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35556666666666652222211 223355666666542211 0 1223466788888888888877655
Q ss_pred cccc----ccCCCCCCeEEcCCCcccCcCCCCCc-------cccccCCCCCCcEEEcccCccccccChhhhh----hccc
Q 048828 123 VSID----FSSLKNLWWLNLEQNNLGMGTANDLD-------FVTSLTNCSSLKSLSLYDNQFGGELPHSIAN----LSST 187 (367)
Q Consensus 123 ~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~ 187 (367)
.+.. +++...|++|.+++|.+.......+. .......-|.|+++....|.+. ..+..... .-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcC
Confidence 5543 46678888888888877655543322 2234456688999998888876 44433221 1235
Q ss_pred ceEEEecCCcccccC-----CccccCCCCCcEEEccCCcccccc----cccccCccCCcEEEccCccccccCCccc----
Q 048828 188 MIQFSIGGNQISGTI-----PPGIRNLVNLVALTMDSNQLHGTI----PDVIGELKNLQVLFLFRNFLQGSIPPSL---- 254 (367)
Q Consensus 188 L~~l~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~~~l---- 254 (367)
++.+.+..|.|.... -..+..+.+|+.|++++|.++... ...++.++.|+.|.+.+|.++......+
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 888888888776431 123567789999999999887432 3455667788999999998875443222
Q ss_pred --cCCCCCCeEEccCCeeccccCcc-------cccCCCCcEEEcCCCccc
Q 048828 255 --GNLTKLADLALSFNNLQGNIPSS-------LGNCQNLISFRASHNKLT 295 (367)
Q Consensus 255 --~~~~~L~~L~l~~n~i~~~~~~~-------~~~~~~L~~L~l~~n~i~ 295 (367)
...|+|+.|.+.+|.+.+..... -.++|-|..+.+.||.+.
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 23588899999888765422211 234677888888888886
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=8.7e-10 Score=71.81 Aligned_cols=57 Identities=42% Similarity=0.646 Sum_probs=24.3
Q ss_pred cceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCC
Q 048828 60 LELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117 (367)
Q Consensus 60 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 117 (367)
|++|++++|.+. .++...|.++++|++|++++|.+....++.|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444443 444444444444444444444444333334444444444444444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=1.1e-09 Score=71.39 Aligned_cols=60 Identities=40% Similarity=0.424 Sum_probs=35.2
Q ss_pred CCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcc
Q 048828 235 NLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKL 294 (367)
Q Consensus 235 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i 294 (367)
+|+.|++++|+++...+..|..+++|+.|++++|.+....+..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666544445555566666666666666555555566666666666666543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=4.8e-09 Score=100.92 Aligned_cols=109 Identities=34% Similarity=0.523 Sum_probs=96.6
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
++.|+++++.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77889999999888999999999999999999999988888899999999999999999988999999999999999999
Q ss_pred CeeccccCcccccC-CCCcEEEcCCCcccC
Q 048828 268 NNLQGNIPSSLGNC-QNLISFRASHNKLTG 296 (367)
Q Consensus 268 n~i~~~~~~~~~~~-~~L~~L~l~~n~i~~ 296 (367)
|.+.+.+|..+... .++..+++.+|....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 99998888877653 467788999886543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=5e-10 Score=93.24 Aligned_cols=224 Identities=21% Similarity=0.221 Sum_probs=128.7
Q ss_pred CCCCCcEEEccCcc--c------cCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccc
Q 048828 32 LLRNLVYLNVAENQ--F------SGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSL 103 (367)
Q Consensus 32 ~~~~L~~L~l~~~~--i------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 103 (367)
-+..|++|..++.. + ...+|-.+.-+.+|+.+.++++.-. .+- ++-..-|.|+++.+.++.++ ..| .+
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~-~~~~~kptl~t~~v~~s~~~-~~~-~l 255 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIV-DIELLKPTLQTICVHNTTIQ-DVP-SL 255 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-hee-ceeecCchhheeeeeccccc-ccc-cc
Confidence 34566666666543 1 1122333344566666766665433 222 11123466777776655443 111 11
Q ss_pred cCCCCCcEEeCCC-CcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhh
Q 048828 104 SNASNLERLDLPG-NQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIA 182 (367)
Q Consensus 104 ~~l~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 182 (367)
-....+......- ....+.......-...|+++++++|.|+..+ .+..-.|.++.|++++|.+. .+.. +.
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD-------ESvKL~Pkir~L~lS~N~i~-~v~n-La 326 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID-------ESVKLAPKLRRLILSQNRIR-TVQN-LA 326 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh-------hhhhhccceeEEecccccee-eehh-hh
Confidence 1111221111111 1111111122333456777777777765333 34555677777888877776 2222 44
Q ss_pred hhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccC-CccccCCCCCC
Q 048828 183 NLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI-PPSLGNLTKLA 261 (367)
Q Consensus 183 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~ 261 (367)
.++. ++.|++++|.++ ....+-.++.++++|.+.+|.+.+. ..+..+-+|..||+++|+|..+. ...++++|.|+
T Consensus 327 ~L~~-L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 327 ELPQ-LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hccc-ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence 4444 788888887766 3444455778899999999987622 23556678899999999998532 24678899999
Q ss_pred eEEccCCeecc
Q 048828 262 DLALSFNNLQG 272 (367)
Q Consensus 262 ~L~l~~n~i~~ 272 (367)
.+.+.+|++.+
T Consensus 403 ~l~L~~NPl~~ 413 (490)
T KOG1259|consen 403 TLRLTGNPLAG 413 (490)
T ss_pred HHhhcCCCccc
Confidence 99999998874
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.3e-11 Score=99.97 Aligned_cols=179 Identities=23% Similarity=0.264 Sum_probs=112.1
Q ss_pred CCccEEEccCCcceee-CcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCc-ccCcCCCCCccccccCCC
Q 048828 83 PNLKELGVGGNNFVGS-IPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNN-LGMGTANDLDFVTSLTNC 160 (367)
Q Consensus 83 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~ 160 (367)
..|+++|+++..++.. +-..+..|.+|+.|++.|+.+.+.+...++.-.+|+.|++++|. ++..+ .-..+.+|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-----~~ll~~sc 259 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-----LQLLLSSC 259 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-----HHHHHHhh
Confidence 3688899988877632 23346788899999999999888777788888999999998874 32221 22355678
Q ss_pred CCCcEEEcccCccccccCh-hhhhhcccceEEEecCCccc---ccCCccccCCCCCcEEEccCCcc-cccccccccCccC
Q 048828 161 SSLKSLSLYDNQFGGELPH-SIANLSSTMIQFSIGGNQIS---GTIPPGIRNLVNLVALTMDSNQL-HGTIPDVIGELKN 235 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~ 235 (367)
+.|.+|+++.|....+... .+......++.|+++++.-. .........|++|.+||+++|.. +......+..++-
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 8999999998876643322 23344455777777765321 11222235667777777776543 3222334455666
Q ss_pred CcEEEccCccccccCCcc---ccCCCCCCeEEccCC
Q 048828 236 LQVLFLFRNFLQGSIPPS---LGNLTKLADLALSFN 268 (367)
Q Consensus 236 L~~L~l~~~~i~~~~~~~---l~~~~~L~~L~l~~n 268 (367)
|++|.++.|... +|.. +...|+|..|++.++
T Consensus 340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 666666666442 3332 234466666666555
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=5.3e-10 Score=102.75 Aligned_cols=245 Identities=27% Similarity=0.285 Sum_probs=119.7
Q ss_pred CCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEE
Q 048828 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERL 112 (367)
Q Consensus 33 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 112 (367)
+..++.+.+..+.+.. ....+..+.+|+.+++.+|.+. .+... ...+++|++|++++|.++.. ..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheeccccccccc--cchhhccchhhh
Confidence 4445555555555542 2233455566666666666665 33221 24566666666666666522 224555556666
Q ss_pred eCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEE
Q 048828 113 DLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFS 192 (367)
Q Consensus 113 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 192 (367)
++++|.+..+ ..+..++.|+.+++++|.+...... . ...+.+++.+.+.+|.+...-... ... .+..++
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~-----~-~~~~~~l~~l~l~~n~i~~i~~~~--~~~-~l~~~~ 214 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND-----E-LSELISLEELDLGGNSIREIEGLD--LLK-KLVLLS 214 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhh-----h-hhhccchHHHhccCCchhcccchH--HHH-HHHHhh
Confidence 6666666532 2234466666666666665432210 0 245556666666666554211111 111 122334
Q ss_pred ecCCcccccCCccccCCC--CCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCee
Q 048828 193 IGGNQISGTIPPGIRNLV--NLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNL 270 (367)
Q Consensus 193 l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i 270 (367)
+..|.+...-+ +.... .|+++++.+|++. ..+..+..+..+..+++.++++... ..+...+.+..+....+.+
T Consensus 215 l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 215 LLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred cccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 44444432111 11222 2666666666665 2223344556666666666666522 2233334555555555544
Q ss_pred ccc---cCcc-cccCCCCcEEEcCCCcccCCc
Q 048828 271 QGN---IPSS-LGNCQNLISFRASHNKLTGAL 298 (367)
Q Consensus 271 ~~~---~~~~-~~~~~~L~~L~l~~n~i~~~~ 298 (367)
... .... ....+.+..+.+.++++....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cchhhhhccccccccccccccccccCcccccc
Confidence 411 1111 333456666666666655433
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=9.2e-10 Score=101.17 Aligned_cols=247 Identities=27% Similarity=0.296 Sum_probs=168.1
Q ss_pred cCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccE
Q 048828 8 NLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKE 87 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (367)
.+..++.+.+..|.+.. ....+..+.+|+.+++.+|.|.. +...+..+++|++|++++|.|. .+.. +..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc--hhhccchhh
Confidence 35566666777777763 33346778899999999999873 3333677899999999999997 4432 356778999
Q ss_pred EEccCCcceeeCcccccCCCCCcEEeCCCCccccccc-ccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEE
Q 048828 88 LGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVS-IDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSL 166 (367)
Q Consensus 88 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 166 (367)
|++++|.+.. ...+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+... ..+..+..+..+
T Consensus 145 L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--------~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 145 LNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--------EGLDLLKKLVLL 213 (414)
T ss_pred heeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--------cchHHHHHHHHh
Confidence 9999999872 3346668999999999999886554 2 57788999999998887533 233334455555
Q ss_pred EcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccc
Q 048828 167 SLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFL 246 (367)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i 246 (367)
++..|.+...-+....... .++.+++.++++.. .+..+..+.++..+++..+.+.... .+...+.+..+....+.+
T Consensus 214 ~l~~n~i~~~~~l~~~~~~-~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 214 SLLDNKISKLEGLNELVML-HLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKL 289 (414)
T ss_pred hcccccceeccCcccchhH-HHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchh
Confidence 6766666521111100000 27888888888773 3366778889999999998876332 233445666777777765
Q ss_pred ccc---CC-ccccCCCCCCeEEccCCeecccc
Q 048828 247 QGS---IP-PSLGNLTKLADLALSFNNLQGNI 274 (367)
Q Consensus 247 ~~~---~~-~~l~~~~~L~~L~l~~n~i~~~~ 274 (367)
... .. ......+.++.+.+.++.+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cchhhhhccccccccccccccccccCcccccc
Confidence 521 11 12455688899999998877533
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=1.7e-09 Score=89.90 Aligned_cols=226 Identities=19% Similarity=0.168 Sum_probs=127.1
Q ss_pred CCcceeecccccccccCC-hhhhhCCCCccEEEccCCccee--eCcccccCCCCCcEEeCCCCcccccccccccCCCCCC
Q 048828 58 SSLELIYLTVNRFSGSLP-FDILVNLPNLKELGVGGNNFVG--SIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLW 134 (367)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 134 (367)
..++.+.+.++.+...-. ..+...++.++.+++.+|.++. .+...+.++|.|+.|+++.|.+...+...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345556666666552221 2233456788888888887762 2334467788888888888877643321113456788
Q ss_pred eEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCcccc--ccChhhhhhcccceEEEecCCcccccC--CccccCCC
Q 048828 135 WLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGG--ELPHSIANLSSTMIQFSIGGNQISGTI--PPGIRNLV 210 (367)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~ 210 (367)
+|-|.+..+.+.... ..+..+|.+++|.|+.|.... ..........+.++++++..|...... ...-.-++
T Consensus 125 ~lVLNgT~L~w~~~~-----s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQST-----SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred EEEEcCCCCChhhhh-----hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 888888777655432 455677888888888874321 111112222223445555444332111 12223456
Q ss_pred CCcEEEccCCcccccc-cccccCccCCcEEEccCccccccCC-ccccCCCCCCeEEccCCeeccccCc------ccccCC
Q 048828 211 NLVALTMDSNQLHGTI-PDVIGELKNLQVLFLFRNFLQGSIP-PSLGNLTKLADLALSFNNLQGNIPS------SLGNCQ 282 (367)
Q Consensus 211 ~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~i~~~~~~------~~~~~~ 282 (367)
++..+.+..|++.+.. ...+..++.+-.|.++.++|-+... +.+..++.|..|+++++++.+.... .++.++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 7777777777665332 2334455666677777777764322 4556677788888887777643221 134455
Q ss_pred CCcEEE
Q 048828 283 NLISFR 288 (367)
Q Consensus 283 ~L~~L~ 288 (367)
+++.|+
T Consensus 280 ~v~vLN 285 (418)
T KOG2982|consen 280 KVQVLN 285 (418)
T ss_pred ceEEec
Confidence 555543
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=2.4e-09 Score=87.91 Aligned_cols=238 Identities=18% Similarity=0.169 Sum_probs=142.1
Q ss_pred CCCCcEEEccCccccCCcchh----ccCCCCcceeecccccc---cccCCh------hhhhCCCCccEEEccCCcceeeC
Q 048828 33 LRNLVYLNVAENQFSGMFPRW----ICNISSLELIYLTVNRF---SGSLPF------DILVNLPNLKELGVGGNNFVGSI 99 (367)
Q Consensus 33 ~~~L~~L~l~~~~i~~~~~~~----~~~l~~L~~L~l~~~~~---~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~ 99 (367)
+..++.+++|+|.|......+ +.+-.+|+..+++.-.. .+.++. ..+.+||+|+.+++|+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455666666666665333332 33445566665554211 112221 12346677777777777665444
Q ss_pred c----ccccCCCCCcEEeCCCCcccccccc-------------cccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCC
Q 048828 100 P----DSLSNASNLERLDLPGNQFKGKVSI-------------DFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSS 162 (367)
Q Consensus 100 ~----~~l~~l~~L~~L~l~~n~l~~~~~~-------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (367)
| +.+++...|.+|.+++|.+...... ..+.-|.|+++....|++...... .....+..-..
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~--~~a~~l~sh~~ 186 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE--LSAALLESHEN 186 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH--HHHHHHHhhcC
Confidence 3 2456667777777777766532211 124557888888888877544432 22233334457
Q ss_pred CcEEEcccCccccccChhhh----hhcccceEEEecCCcccc----cCCccccCCCCCcEEEccCCcccccccccc----
Q 048828 163 LKSLSLYDNQFGGELPHSIA----NLSSTMIQFSIGGNQISG----TIPPGIRNLVNLVALTMDSNQLHGTIPDVI---- 230 (367)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---- 230 (367)
|+++.+..|.+.......+. ....+|+.|+++.|-++. .+..++...+.|++|.+.+|.++......+
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 88888888877633222221 123458888888887663 234566777889999999998875443221
Q ss_pred --cCccCCcEEEccCccccccC------Cc-cccCCCCCCeEEccCCeecc
Q 048828 231 --GELKNLQVLFLFRNFLQGSI------PP-SLGNLTKLADLALSFNNLQG 272 (367)
Q Consensus 231 --~~~~~L~~L~l~~~~i~~~~------~~-~l~~~~~L~~L~l~~n~i~~ 272 (367)
...++|..|...+|...+-+ +. .-..+|-|..+.+.+|.+..
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 23588999999998665321 11 12457888888888888874
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=3.6e-09 Score=88.09 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=104.5
Q ss_pred CCCCCcEEEccCccccC--CcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCccee-eCcccccCCCC
Q 048828 32 LLRNLVYLNVAENQFSG--MFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVG-SIPDSLSNASN 108 (367)
Q Consensus 32 ~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~ 108 (367)
.++.++.+|+.+|.|.. .+...+..+|.|++|++++|++...+...- ....+|++|-+.++.+.- .....+..+|+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45667777777777652 234455567777777777776652222111 234567777776665431 12223456667
Q ss_pred CcEEeCCCCccccccccc--c-cCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhc
Q 048828 109 LERLDLPGNQFKGKVSID--F-SSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLS 185 (367)
Q Consensus 109 L~~L~l~~n~l~~~~~~~--l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 185 (367)
+++|+++.|.+.....++ . ..-+.++++....|....-. ........+|++..+.+..|.+.......-+...
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~----~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL----NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH----HHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 777777766443221111 1 11234455555544321100 1111223356777777777765533222222222
Q ss_pred ccceEEEecCCcccccCC-ccccCCCCCcEEEccCCccccccc------ccccCccCCcEEE
Q 048828 186 STMIQFSIGGNQISGTIP-PGIRNLVNLVALTMDSNQLHGTIP------DVIGELKNLQVLF 240 (367)
Q Consensus 186 ~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~L~~L~ 240 (367)
+.+..|+++.+++.++.. +.+..++.|..|.++.+++.+... ..++.+++++.|+
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 335566777777665432 456777777777777777653221 1234455666554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.2e-10 Score=95.10 Aligned_cols=178 Identities=20% Similarity=0.157 Sum_probs=119.4
Q ss_pred CCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccC--CccccC
Q 048828 131 KNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTI--PPGIRN 208 (367)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~ 208 (367)
..|++++|+...++... ....+..|.+|+.|.+.++.+++.+...++.-.. |+.++++++.-.... .-.+..
T Consensus 185 sRlq~lDLS~s~it~st-----l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~-L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVST-----LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN-LVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHH-----HHHHHHHHHhhhhccccccccCcHHHHHHhcccc-ceeeccccccccchhHHHHHHHh
Confidence 45888888877765432 2345678889999999998888766666665544 889998876432222 234678
Q ss_pred CCCCcEEEccCCcccccccccc-c-CccCCcEEEccCcccc---ccCCccccCCCCCCeEEccCCe-eccccCcccccCC
Q 048828 209 LVNLVALTMDSNQLHGTIPDVI-G-ELKNLQVLFLFRNFLQ---GSIPPSLGNLTKLADLALSFNN-LQGNIPSSLGNCQ 282 (367)
Q Consensus 209 ~~~L~~L~l~~n~~~~~~~~~~-~-~~~~L~~L~l~~~~i~---~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~~~~~~ 282 (367)
|+.|.+|++++|.+..+..... . --++|+.|+++|+.-. .........+|+|..||+++|- ++......+.+++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 8999999999988764332111 1 1267888999987532 1122234578999999999874 4433445577788
Q ss_pred CCcEEEcCCCcccCCcchhh---hhhcccceeEeccCC
Q 048828 283 NLISFRASHNKLTGALPYQL---LSITTLSLYLDLSYN 317 (367)
Q Consensus 283 ~L~~L~l~~n~i~~~~~~~~---~~~~~ll~~L~l~~n 317 (367)
.|++|.++.|.. .+|..+ .+.|.+ .||++.++
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl-~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELNSKPSL-VYLDVFGC 373 (419)
T ss_pred hheeeehhhhcC--CChHHeeeeccCcce-EEEEeccc
Confidence 999999998864 345544 344666 88888764
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=3.1e-09 Score=98.46 Aligned_cols=125 Identities=25% Similarity=0.194 Sum_probs=64.8
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
|...+.+.|.+. .+..++.-++.++.|+++.|++++.. .+..+++|++|||++|++..+.-..-..+ .|+.|.++|
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 444455555544 34444555566666666666665332 45556666666666666653221122222 266666666
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccCC-cchhhhhhcccceeEeccCCee
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTGA-LPYQLLSITTLSLYLDLSYNLL 319 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~ll~~L~l~~n~i 319 (367)
|.++.. ..+.++.+|+.||+++|-+.+- --.-++.+..+ +.|++.||++
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L-~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL-IVLWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH-HHHhhcCCcc
Confidence 666522 3455666666666666655421 11122333344 5666666665
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=1.9e-08 Score=93.35 Aligned_cols=127 Identities=26% Similarity=0.293 Sum_probs=74.1
Q ss_pred cceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcC
Q 048828 60 LELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLE 139 (367)
Q Consensus 60 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 139 (367)
|...+++.|.+. .+.. .++-++.++.|+|+.|+++.. +.+..+++|++||++.|.+....-....++ +|+.|++.
T Consensus 166 L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 344444445443 2222 234467777778887777632 256777778888887777763322222233 37777777
Q ss_pred CCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCccc
Q 048828 140 QNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQIS 199 (367)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 199 (367)
+|.++ -...+.++.+|+.|++++|-+.+...-.+......|+.|++.+|.+-
T Consensus 241 nN~l~--------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALT--------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHH--------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77653 23455667777888888877664332222222234777777777665
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.35 E-value=1.6e-08 Score=87.95 Aligned_cols=278 Identities=18% Similarity=0.088 Sum_probs=135.2
Q ss_pred CCcEEEccCcccCCCC--ccccCCCCCCcEEEccCcc-ccCCcc-hhccCCCCcceeeccccc-ccccCChhhhhCCCCc
Q 048828 11 ALGILLIRWNSLGGQI--PTTLGLLRNLVYLNVAENQ-FSGMFP-RWICNISSLELIYLTVNR-FSGSLPFDILVNLPNL 85 (367)
Q Consensus 11 ~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~-i~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L 85 (367)
.|+.|.+.++.-.+.- -..-..++++++|.+.++. +++..- ..-..+++|++|++..|. ++...-.....++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4566666666533221 1223567777777777765 222111 122245677777766632 3322223344567777
Q ss_pred cEEEccCCcc-ee-eCcccccCCCCCcEEeCCCCccccccc--ccccCCCCCCeEEcCCCcc-cCcCCCCCccccccCCC
Q 048828 86 KELGVGGNNF-VG-SIPDSLSNASNLERLDLPGNQFKGKVS--IDFSSLKNLWWLNLEQNNL-GMGTANDLDFVTSLTNC 160 (367)
Q Consensus 86 ~~L~l~~~~~-~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~ 160 (367)
+++++++|.- .+ .+.....++..++.+...||.-.+... ..=+.++-+.++++..|.. +.. .....-..+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-----~~~~i~~~c 293 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-----DLWLIACGC 293 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-----HHHHHhhhh
Confidence 7777776642 21 111223455556666666553211100 0112344455555544421 111 112223445
Q ss_pred CCCcEEEcccCccc-cccChhhhhhcccceEEEecCCccc-ccCCccc-cCCCCCcEEEccCCccccc--ccccccCccC
Q 048828 161 SSLKSLSLYDNQFG-GELPHSIANLSSTMIQFSIGGNQIS-GTIPPGI-RNLVNLVALTMDSNQLHGT--IPDVIGELKN 235 (367)
Q Consensus 161 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~ 235 (367)
..|+++..+++... ......+.....+|+.+.+..++-. ..-...+ .+++.|+.+++..+....+ +...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 66777777665432 1222233333345667776666422 1111222 3556677777766654311 2223345667
Q ss_pred CcEEEccCccc-ccc----CCccccCCCCCCeEEccCCeec-cccCcccccCCCCcEEEcCCCc
Q 048828 236 LQVLFLFRNFL-QGS----IPPSLGNLTKLADLALSFNNLQ-GNIPSSLGNCQNLISFRASHNK 293 (367)
Q Consensus 236 L~~L~l~~~~i-~~~----~~~~l~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~ 293 (367)
|+.+.++.|.. ++. ....-..+..|+.+.+++++.+ +...+.+..|++|+.+++-+|+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 77777776643 222 1112233466677777777543 2233445566777777777764
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.32 E-value=1.2e-06 Score=69.17 Aligned_cols=129 Identities=22% Similarity=0.187 Sum_probs=84.6
Q ss_pred cEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCC
Q 048828 37 VYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPG 116 (367)
Q Consensus 37 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 116 (367)
+.+++.+.++..+ ...-.-..+...+|+++|.+. .++ .|..+++|..|.+.+|.++.+.|..-.-+++|+.|.+.+
T Consensus 22 ~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccch-hhccccccccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 4455555554411 110111345667788888765 332 245778888888888888876666556677888888888
Q ss_pred Cccccccc-ccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCc
Q 048828 117 NQFKGKVS-IDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQ 172 (367)
Q Consensus 117 n~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (367)
|.+..... ..+..+|+|++|.+-+|.+.....+ ..-.+..+++|+.|++.+-.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~Y---R~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNY---RLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCc---eeEEEEecCcceEeehhhhh
Confidence 88775432 2367888888888888877655543 33455677888888887643
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.28 E-value=3.2e-06 Score=64.28 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=43.4
Q ss_pred hccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
|.++++|+.+.+.. .+......+|..+++|+.+.+..+ +..+...+|.++++++.+.+.+ .+. .++...|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence 55555555555543 333334444555555555555543 4333444455555555555543 222 3444444455555
Q ss_pred cEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCC
Q 048828 86 KELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNL 133 (367)
Q Consensus 86 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 133 (367)
+.+.+..+ +.......|.++ +|+.+.+.. .+..+....|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555443 332333344444 555555543 2222333334444433
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.26 E-value=2e-07 Score=89.85 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=93.7
Q ss_pred CCCcEEEccCcccc--CCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcE
Q 048828 34 RNLVYLNVAENQFS--GMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLER 111 (367)
Q Consensus 34 ~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 111 (367)
.+|++|+++|...- +.....-..+|.|+.|.+++-.+...--...++++|+|..||+|++.++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46888888776532 111122335788888888776553222234456778888888888887733 56778888888
Q ss_pred EeCCCCccccc-ccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceE
Q 048828 112 LDLPGNQFKGK-VSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQ 190 (367)
Q Consensus 112 L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 190 (367)
|.+.+-.+... .-..+-.+++|+.|+++.........-.....+....+|+|+.|+.+++.+...+.+.+...-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 88776655431 22345678888888888665433221111223344457888888888877765555444433333444
Q ss_pred E
Q 048828 191 F 191 (367)
Q Consensus 191 l 191 (367)
+
T Consensus 280 i 280 (699)
T KOG3665|consen 280 I 280 (699)
T ss_pred h
Confidence 4
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.11 E-value=5.1e-08 Score=84.93 Aligned_cols=282 Identities=15% Similarity=0.076 Sum_probs=175.6
Q ss_pred chhccCCCCcEEEccCcc-cCCCCcccc-CCCCCCcEEEccCcc-ccCCcch-hccCCCCcceeeccccc-ccccCChhh
Q 048828 4 DFIGNLSALGILLIRWNS-LGGQIPTTL-GLLRNLVYLNVAENQ-FSGMFPR-WICNISSLELIYLTVNR-FSGSLPFDI 78 (367)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~-i~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~ 78 (367)
....+++++++|.+.++. +++..-..+ ..|++|+++++..|. ++...-. .-..+++|++++++.+. +.+.--..+
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 345689999999999885 332222222 468999999999965 4433222 33468999999999875 333333355
Q ss_pred hhCCCCccEEEccCCccee--eCcccccCCCCCcEEeCCCCc-ccccccc-cccCCCCCCeEEcCCCcccCcCCCCCccc
Q 048828 79 LVNLPNLKELGVGGNNFVG--SIPDSLSNASNLERLDLPGNQ-FKGKVSI-DFSSLKNLWWLNLEQNNLGMGTANDLDFV 154 (367)
Q Consensus 79 ~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~-l~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 154 (367)
.+++..++.+.+.+|.-.. .+...=..++-+.++++..|. ++..... .-..+..|+++..+++.-. .+....
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~----~d~~l~ 313 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI----TDEVLW 313 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC----chHHHH
Confidence 6777788888777664210 011111345556667765553 2222111 1245678888888877541 122333
Q ss_pred cccCCCCCCcEEEcccCc-cccccChhhhhhcccceEEEecCCcccc--cCCccccCCCCCcEEEccCCcc-cccc----
Q 048828 155 TSLTNCSSLKSLSLYDNQ-FGGELPHSIANLSSTMIQFSIGGNQISG--TIPPGIRNLVNLVALTMDSNQL-HGTI---- 226 (367)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~-~~~~---- 226 (367)
.-..++++|+.+.+.+|+ ++......+......|+.+++..+.... .+...-.+|+.|+++.++.+.. +++.
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 445678999999999987 3333344455555568888888775432 2344556889999999998764 3331
Q ss_pred cccccCccCCcEEEccCcccc-ccCCccccCCCCCCeEEccCCeec-cc-cCcccccCCCCcEEEc
Q 048828 227 PDVIGELKNLQVLFLFRNFLQ-GSIPPSLGNLTKLADLALSFNNLQ-GN-IPSSLGNCQNLISFRA 289 (367)
Q Consensus 227 ~~~~~~~~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~n~i~-~~-~~~~~~~~~~L~~L~l 289 (367)
...-.+...|+.+-++++..+ +...+.+..+++|+++++.+|+-. .. +......+|+++..-+
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 223345678999999999754 344456778899999999998443 22 2223345777765444
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.07 E-value=1.7e-05 Score=60.24 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=65.3
Q ss_pred ccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCC
Q 048828 27 PTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNA 106 (367)
Q Consensus 27 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 106 (367)
..+|..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|.++++++.+.+.. .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccc
Confidence 45677888899998875 455566777888888888888875 55 77777788888888888876 4443555667778
Q ss_pred CCCcEEeCCCCcccccccccccCCCCCCeEEcCC
Q 048828 107 SNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQ 140 (367)
Q Consensus 107 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 140 (367)
++|+.+++..+ +.......+..+ +|+.+.+..
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 88888888664 555555667776 888877764
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=3.3e-07 Score=67.75 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=79.7
Q ss_pred cCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcE
Q 048828 207 RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLIS 286 (367)
Q Consensus 207 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 286 (367)
.....|+..++++|.+.+..+..-..++.++.|++++|.+. ..|.-+..++.|+.++++.|++. ..|..+..+.++-.
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 34456677788888877444444445567888888888888 44555778888888888888887 56677777788888
Q ss_pred EEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccC
Q 048828 287 FRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFT 329 (367)
Q Consensus 287 L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~ 329 (367)
|+..+|.+. .+|..+.. +++....++.++++.+..+.....
T Consensus 128 Lds~~na~~-eid~dl~~-s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFY-SSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred hcCCCCccc-cCcHHHhc-cccHHHHHhcCCcccccCcccccc
Confidence 888888776 56665332 222244555666777666654443
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=2e-07 Score=68.94 Aligned_cols=88 Identities=27% Similarity=0.363 Sum_probs=51.2
Q ss_pred cCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCC
Q 048828 157 LTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNL 236 (367)
Q Consensus 157 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 236 (367)
+.....|...++++|.+. .+|..+...++.++.+++.+|.+. ..|..++.++.|+.|++..|.+. ..|..+..+.++
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 334455666666666665 566666555544666666666665 34444666666666666666665 444444445566
Q ss_pred cEEEccCcccc
Q 048828 237 QVLFLFRNFLQ 247 (367)
Q Consensus 237 ~~L~l~~~~i~ 247 (367)
..|+..+|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 66666665554
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=7.7e-05 Score=66.83 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=26.4
Q ss_pred CCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCC
Q 048828 57 ISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGN 117 (367)
Q Consensus 57 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 117 (367)
+.+++.|++++|.+. .+|. -..+|++|.+++|.-...+|+.+ .++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 455566666665554 4441 13356666665543322344333 235555555554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.91 E-value=2e-05 Score=62.44 Aligned_cols=125 Identities=24% Similarity=0.240 Sum_probs=90.9
Q ss_pred cEEEccCcccCCCCccccC-CCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEcc
Q 048828 13 GILLIRWNSLGGQIPTTLG-LLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVG 91 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (367)
+.+++.+.++..... ++ -..+...+|+++|.+. ....|..++.|.+|.+.+|.|+ .+...+...+++|+.|.+.
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 556666665542211 11 1245778999999886 2344778889999999999998 8887777778999999999
Q ss_pred CCcceeeC-cccccCCCCCcEEeCCCCcccccc---cccccCCCCCCeEEcCCCc
Q 048828 92 GNNFVGSI-PDSLSNASNLERLDLPGNQFKGKV---SIDFSSLKNLWWLNLEQNN 142 (367)
Q Consensus 92 ~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~~~~L~~L~l~~~~ 142 (367)
+|.+.... -+-+..||+|++|.+-+|.+.... ...+..+|+|+.|++..-.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 99886321 234778999999999999876432 3347889999999987543
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.4e-05 Score=47.64 Aligned_cols=36 Identities=33% Similarity=0.555 Sum_probs=14.9
Q ss_pred CCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 259 KLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 259 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
+|+.|++++|.++ .++..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 22333444444444444444444
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.9e-05 Score=47.07 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=12.4
Q ss_pred CcEEEccCccccCCcchhccCCCCcceeecccccc
Q 048828 36 LVYLNVAENQFSGMFPRWICNISSLELIYLTVNRF 70 (367)
Q Consensus 36 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~ 70 (367)
|++|++++|.|+ .++..+.++++|++|++++|.+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 344444444443 2222333444444444444433
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=0.00016 Score=64.81 Aligned_cols=137 Identities=19% Similarity=0.198 Sum_probs=72.0
Q ss_pred CCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCC-cceeeCcccccCCCCC
Q 048828 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGN-NFVGSIPDSLSNASNL 109 (367)
Q Consensus 31 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L 109 (367)
..+.++++|++++|.++ .+|. + ..+|++|.++++.-...+|..+ .++|++|++++| .+. .+|. .|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------cc
Confidence 34677888888888766 4452 1 2358888887654332445322 357888888877 333 3333 46
Q ss_pred cEEeCCCCcccccccccccCC-CCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccc
Q 048828 110 ERLDLPGNQFKGKVSIDFSSL-KNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTM 188 (367)
Q Consensus 110 ~~L~l~~n~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 188 (367)
+.|++.++.... +..+ ++|++|.+.+++..... ... -.-.++|+.|.+.+|... ..|. .++.++
T Consensus 115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~----~lp--~~LPsSLk~L~Is~c~~i-~LP~---~LP~SL 179 (426)
T PRK15386 115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQA----RID--NLISPSLKTLSLTGCSNI-ILPE---KLPESL 179 (426)
T ss_pred ceEEeCCCCCcc-----cccCcchHhheecccccccccc----ccc--cccCCcccEEEecCCCcc-cCcc---cccccC
Confidence 666665544321 2222 35666666432210000 000 011256777777776644 2232 233457
Q ss_pred eEEEecCC
Q 048828 189 IQFSIGGN 196 (367)
Q Consensus 189 ~~l~l~~~ 196 (367)
+.|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 77776554
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=3.5e-05 Score=74.64 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=66.9
Q ss_pred CCCcEEEccCcccC-CCCcccc-CCCCCCcEEEccCcccc-CCcchhccCCCCcceeecccccccccCChhhhhCCCCcc
Q 048828 10 SALGILLIRWNSLG-GQIPTTL-GLLRNLVYLNVAENQFS-GMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLK 86 (367)
Q Consensus 10 ~~L~~L~l~~~~~~-~~~~~~~-~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (367)
.+|+.|++++...- ...+..+ .-+|+|++|.+.+-.+. +.......++|+|..||++++.++ .+ ...+.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence 45666666654322 1112222 24666777766665542 223344556666777777766665 33 2235666666
Q ss_pred EEEccCCccee-eCcccccCCCCCcEEeCCCCcccccc--c----ccccCCCCCCeEEcCCCcc
Q 048828 87 ELGVGGNNFVG-SIPDSLSNASNLERLDLPGNQFKGKV--S----IDFSSLKNLWWLNLEQNNL 143 (367)
Q Consensus 87 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~~~~L~~L~l~~~~~ 143 (367)
+|.+.+=.+.. ..-..+.++++|+.||+|........ . ..-..+|.|+.|+.+++.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 66666544431 11123556666777776654332111 0 0113356666666665544
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.36 E-value=1.1e-05 Score=76.16 Aligned_cols=113 Identities=23% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCCCcceeecccccccccC-ChhhhhCCCCccEEEccCC-cceeeC----cccccCCCCCcEEeCCCCc-cccccccccc
Q 048828 56 NISSLELIYLTVNRFSGSL-PFDILVNLPNLKELGVGGN-NFVGSI----PDSLSNASNLERLDLPGNQ-FKGKVSIDFS 128 (367)
Q Consensus 56 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~ 128 (367)
..+.|+.+.+.++.-.... -..+...+++|+.|+++.+ ...... ......+++|+.++++++. ++......+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566777776665322121 1233456677777777752 111011 1123456777777777766 4433333333
Q ss_pred -CCCCCCeEEcCCCc-ccCcCCCCCccccccCCCCCCcEEEcccCcc
Q 048828 129 -SLKNLWWLNLEQNN-LGMGTANDLDFVTSLTNCSSLKSLSLYDNQF 173 (367)
Q Consensus 129 -~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 173 (367)
.+++|++|.+..|. ++.. .+......++.|++|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~-----gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDE-----GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchh-----HHHHHHHhcCcccEEeeecCcc
Confidence 36777777766665 3322 2334445677778888777654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.23 E-value=0.00012 Score=60.66 Aligned_cols=85 Identities=28% Similarity=0.261 Sum_probs=39.7
Q ss_pred CCCccEEEccCC--cceeeCcccccCCCCCcEEeCCCCccccc-ccccccCCCCCCeEEcCCCcccCcCCCCCccccccC
Q 048828 82 LPNLKELGVGGN--NFVGSIPDSLSNASNLERLDLPGNQFKGK-VSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLT 158 (367)
Q Consensus 82 ~~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 158 (367)
+++|++|.++.| .+...++....++|+|+++++++|++... ....+..+++|..|++..|..+.... +....+.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~d---yre~vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDD---YREKVFL 140 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcccccc---HHHHHHH
Confidence 455555555555 33323333334446666666666655421 11124455556666666665443222 1222333
Q ss_pred CCCCCcEEEcc
Q 048828 159 NCSSLKSLSLY 169 (367)
Q Consensus 159 ~~~~L~~L~l~ 169 (367)
-+++|+.|+-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 44555555443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00011 Score=60.76 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=15.9
Q ss_pred CCCCCcEEeCCCC--cccccccccccCCCCCCeEEcCCCcc
Q 048828 105 NASNLERLDLPGN--QFKGKVSIDFSSLKNLWWLNLEQNNL 143 (367)
Q Consensus 105 ~l~~L~~L~l~~n--~l~~~~~~~l~~~~~L~~L~l~~~~~ 143 (367)
.+++|++|.++.| ++..........+|+|+++++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3444444444444 22222222223334444444444444
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=4.5e-05 Score=71.89 Aligned_cols=111 Identities=17% Similarity=0.071 Sum_probs=52.3
Q ss_pred CCCCcEEEccCccccCC--cchhccCCCCcceeecccc-cccccC---ChhhhhCCCCccEEEccCCc-ceeeCccccc-
Q 048828 33 LRNLVYLNVAENQFSGM--FPRWICNISSLELIYLTVN-RFSGSL---PFDILVNLPNLKELGVGGNN-FVGSIPDSLS- 104 (367)
Q Consensus 33 ~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~- 104 (367)
++.|+.+.+.++.-... .......+++|+.|+++++ ...... .......+++|+.|+++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 55666666655532211 2233445566666666542 110011 11233345666666666665 3322222222
Q ss_pred CCCCCcEEeCCCCc-cccccccc-ccCCCCCCeEEcCCCcc
Q 048828 105 NASNLERLDLPGNQ-FKGKVSID-FSSLKNLWWLNLEQNNL 143 (367)
Q Consensus 105 ~l~~L~~L~l~~n~-l~~~~~~~-l~~~~~L~~L~l~~~~~ 143 (367)
.+++|++|.+.++. ++...... ...++.|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25666666655554 33322222 24456666666666543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=5.8e-05 Score=62.95 Aligned_cols=92 Identities=22% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccC-cccccCCCCcEE
Q 048828 209 LVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIP-SSLGNCQNLISF 287 (367)
Q Consensus 209 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L 287 (367)
+.+.++|+.-+|.+++. .....++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|..... ..+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566677777776632 1234567777777777777743 345667777777777777763211 235567777777
Q ss_pred EcCCCcccCCcchhhhh
Q 048828 288 RASHNKLTGALPYQLLS 304 (367)
Q Consensus 288 ~l~~n~i~~~~~~~~~~ 304 (367)
.|..|+..|..+..+..
T Consensus 94 WL~ENPCc~~ag~nYR~ 110 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRR 110 (388)
T ss_pred hhccCCcccccchhHHH
Confidence 77777777776666543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00012 Score=61.20 Aligned_cols=79 Identities=29% Similarity=0.246 Sum_probs=33.5
Q ss_pred CCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeC-cccccCCCCCcEEe
Q 048828 35 NLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSI-PDSLSNASNLERLD 113 (367)
Q Consensus 35 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~ 113 (367)
+.+.|++-||.+.++ .....++.|++|.|+-|.|+ .+.. +..|++|++|+|+.|.+.... -..+.++|+|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344444444444321 11234445555555555544 2221 234555555555544443110 12244455555555
Q ss_pred CCCCc
Q 048828 114 LPGNQ 118 (367)
Q Consensus 114 l~~n~ 118 (367)
+..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 54443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.62 E-value=3.5e-05 Score=71.39 Aligned_cols=206 Identities=21% Similarity=0.177 Sum_probs=112.3
Q ss_pred ccEEEccCCcceee----CcccccCCCCCcEEeCCCCccccccccc----ccCC-CCCCeEEcCCCcccCcCCCCCcccc
Q 048828 85 LKELGVGGNNFVGS----IPDSLSNASNLERLDLPGNQFKGKVSID----FSSL-KNLWWLNLEQNNLGMGTANDLDFVT 155 (367)
Q Consensus 85 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~ 155 (367)
+..+.+.+|.+... +..++...+.|+.|++++|.+....... +... +.+++|++..|.++..+.. ....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HHHH
Confidence 56666666665422 2334566777888888888776433222 2332 5566777777776655443 3334
Q ss_pred ccCCCCCCcEEEcccCccccc----cChhhhh---hcccceEEEecCCcccccC----CccccCCCC-CcEEEccCCccc
Q 048828 156 SLTNCSSLKSLSLYDNQFGGE----LPHSIAN---LSSTMIQFSIGGNQISGTI----PPGIRNLVN-LVALTMDSNQLH 223 (367)
Q Consensus 156 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~---~~~~L~~l~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~n~~~ 223 (367)
.+..+..++++++..|.+... .+..+.. ...+++++.+.++.++... ..++...+. +.++++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 555577778888877776411 1222221 2224666666666655322 123344444 666777777765
Q ss_pred cccc----ccccCc-cCCcEEEccCccccccCC----ccccCCCCCCeEEccCCeeccccCc----ccccCCCCcEEEcC
Q 048828 224 GTIP----DVIGEL-KNLQVLFLFRNFLQGSIP----PSLGNLTKLADLALSFNNLQGNIPS----SLGNCQNLISFRAS 290 (367)
Q Consensus 224 ~~~~----~~~~~~-~~L~~L~l~~~~i~~~~~----~~l~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~ 290 (367)
+... ..+... ..++.++++.|.+++... ..+..++.++.+.+++|.+...... .......+.++.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~ 326 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLG 326 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcc
Confidence 4321 223333 556777777777765432 3344556777777777777642221 12233445555555
Q ss_pred CC
Q 048828 291 HN 292 (367)
Q Consensus 291 ~n 292 (367)
++
T Consensus 327 ~~ 328 (478)
T KOG4308|consen 327 GT 328 (478)
T ss_pred cc
Confidence 44
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.0046 Score=49.45 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=42.1
Q ss_pred CCcEEEccCCcccccccccccCccCCcEEEccCccccc-cCCccc-cCCCCCCeEEccCC-eeccccCcccccCCCCcEE
Q 048828 211 NLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQG-SIPPSL-GNLTKLADLALSFN-NLQGNIPSSLGNCQNLISF 287 (367)
Q Consensus 211 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l-~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L 287 (367)
.++.++-+++.+..+..+.+..++.++.|.+.+|.--+ ..-+.+ +-.++|+.|++++| .|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35555555555554545555555666666665553221 100111 12356666666666 4554444555556666666
Q ss_pred EcCCC
Q 048828 288 RASHN 292 (367)
Q Consensus 288 ~l~~n 292 (367)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.57 E-value=0.021 Score=28.07 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=5.2
Q ss_pred CcEEEccCcccc
Q 048828 36 LVYLNVAENQFS 47 (367)
Q Consensus 36 L~~L~l~~~~i~ 47 (367)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.44 E-value=0.028 Score=27.62 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=5.3
Q ss_pred ccEEEccCCcce
Q 048828 85 LKELGVGGNNFV 96 (367)
Q Consensus 85 L~~L~l~~~~~~ 96 (367)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.13 E-value=0.00018 Score=66.79 Aligned_cols=187 Identities=19% Similarity=0.200 Sum_probs=103.5
Q ss_pred CcEEEccCccccCC----cchhccCCCCcceeecccccccccCChhhh---hCC-CCccEEEccCCcceee----Ccccc
Q 048828 36 LVYLNVAENQFSGM----FPRWICNISSLELIYLTVNRFSGSLPFDIL---VNL-PNLKELGVGGNNFVGS----IPDSL 103 (367)
Q Consensus 36 L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~-~~L~~L~l~~~~~~~~----~~~~l 103 (367)
+..+.+.+|.+... +..++...+.|+.|++++|.+.+....... ... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66667777765432 333555667777777777776522211111 111 3456666666666532 23345
Q ss_pred cCCCCCcEEeCCCCccccc----cccccc----CCCCCCeEEcCCCcccCcCCCCCccccccCCCCC-CcEEEcccCccc
Q 048828 104 SNASNLERLDLPGNQFKGK----VSIDFS----SLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSS-LKSLSLYDNQFG 174 (367)
Q Consensus 104 ~~l~~L~~L~l~~n~l~~~----~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 174 (367)
.....++.++++.|.+... .+..+. ...++++|.+..|.++..... .....+...+. +.++++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--LLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--HHHHHHhccchhhHHHHHHhcCcc
Confidence 5567777777777766321 122222 356777777777776644332 22233444444 566777777665
Q ss_pred cccChh----hhhhcccceEEEecCCcccccC----CccccCCCCCcEEEccCCcccc
Q 048828 175 GELPHS----IANLSSTMIQFSIGGNQISGTI----PPGIRNLVNLVALTMDSNQLHG 224 (367)
Q Consensus 175 ~~~~~~----~~~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~~~~ 224 (367)
+..... +......++.++++.|.++... +..+..++.++++.+++|.+.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 332222 2222233567777777766432 3445566777777777777653
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.69 E-value=0.053 Score=24.73 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=4.0
Q ss_pred CCcEEEcCCCcc
Q 048828 283 NLISFRASHNKL 294 (367)
Q Consensus 283 ~L~~L~l~~n~i 294 (367)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.0088 Score=47.87 Aligned_cols=83 Identities=17% Similarity=0.071 Sum_probs=52.2
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccc-cccc-cCccCCcEEEccCc-cccccCCccccCCCCCCeEE
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTI-PDVI-GELKNLQVLFLFRN-FLQGSIPPSLGNLTKLADLA 264 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~-~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~ 264 (367)
++.++-+++.|....-+.+..++.++.|.+.+|.-.+.. .+.+ ...++|+.|++++| +|++.....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 555555555554444455666677777777776543221 1111 23578888999887 57766666777788888888
Q ss_pred ccCCee
Q 048828 265 LSFNNL 270 (367)
Q Consensus 265 l~~n~i 270 (367)
+.+-+.
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 877543
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.05 E-value=0.043 Score=27.56 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=4.6
Q ss_pred CCCeEEccCCeec
Q 048828 259 KLADLALSFNNLQ 271 (367)
Q Consensus 259 ~L~~L~l~~n~i~ 271 (367)
+|+.|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.38 E-value=0.18 Score=25.82 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=10.6
Q ss_pred CCcceeecccccccccCChhhh
Q 048828 58 SSLELIYLTVNRFSGSLPFDIL 79 (367)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~ 79 (367)
++|+.|++++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555554 5554443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.38 E-value=0.18 Score=25.82 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=10.6
Q ss_pred CCcceeecccccccccCChhhh
Q 048828 58 SSLELIYLTVNRFSGSLPFDIL 79 (367)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~ 79 (367)
++|+.|++++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555554 5554443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.67 E-value=0.015 Score=47.60 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=65.0
Q ss_pred cccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCC
Q 048828 205 GIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284 (367)
Q Consensus 205 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 284 (367)
.+......+.||++.|++. ..-..|+-++.+..|+++.|++. ..|..++....++.+++.+|... ..|..+.+.|++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455667777888888776 33344556677888888888887 67777777777778888877777 577788888888
Q ss_pred cEEEcCCCccc
Q 048828 285 ISFRASHNKLT 295 (367)
Q Consensus 285 ~~L~l~~n~i~ 295 (367)
+.+++.++++.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888888765
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.17 E-value=0.025 Score=46.39 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=37.9
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
.+.|+++.++.. -....|.-++.+..|+++.|.+. ..|..+.....+..+++-+|..+ ..|.+++..+.++.++..+
T Consensus 44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 444444444433 12222334444555555555544 44444444444555555555444 4445555555555555555
Q ss_pred Ceec
Q 048828 268 NNLQ 271 (367)
Q Consensus 268 n~i~ 271 (367)
+.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 5443
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=77.44 E-value=17 Score=33.73 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=7.1
Q ss_pred CCcEEEccCccccCC
Q 048828 35 NLVYLNVAENQFSGM 49 (367)
Q Consensus 35 ~L~~L~l~~~~i~~~ 49 (367)
.+++++++.|.+...
T Consensus 166 r~r~~dls~npi~dk 180 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDK 180 (553)
T ss_pred hhhhhccCCCccccc
Confidence 344555555544433
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.13 E-value=2.2 Score=22.26 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=6.8
Q ss_pred CCcEEEcCCCccc
Q 048828 283 NLISFRASHNKLT 295 (367)
Q Consensus 283 ~L~~L~l~~n~i~ 295 (367)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.72 E-value=2.6 Score=21.58 Aligned_cols=15 Identities=47% Similarity=0.483 Sum_probs=6.9
Q ss_pred eeEeccCCeeeeccCc
Q 048828 310 LYLDLSYNLLNGSLPL 325 (367)
Q Consensus 310 ~~L~l~~n~i~~~~p~ 325 (367)
++|++++|+++ .+|+
T Consensus 5 ~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 5 KELNVSNNQLT-SLPE 19 (26)
T ss_pred ceeecCCCccc-cCcc
Confidence 44444444444 4443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.39 E-value=4.5 Score=20.73 Aligned_cols=13 Identities=62% Similarity=0.856 Sum_probs=6.5
Q ss_pred CCcEEeCCCCccc
Q 048828 108 NLERLDLPGNQFK 120 (367)
Q Consensus 108 ~L~~L~l~~n~l~ 120 (367)
+|+.|+++.|+|.
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4555555555443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.55 E-value=2.7 Score=39.43 Aligned_cols=67 Identities=22% Similarity=0.095 Sum_probs=38.1
Q ss_pred CccCCcEEEccCccccccC--CccccCCCCCCeEEccCCeeccccCccccc--CCCCcEEEcCCCcccCCc
Q 048828 232 ELKNLQVLFLFRNFLQGSI--PPSLGNLTKLADLALSFNNLQGNIPSSLGN--CQNLISFRASHNKLTGAL 298 (367)
Q Consensus 232 ~~~~L~~L~l~~~~i~~~~--~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~i~~~~ 298 (367)
+.+.+..+.+++|++.... ...-...|+|+.|+|++|...-.....+.+ ...|++|.+.||++.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 4466677777777765321 112234577888888887222122233333 356778888888776443
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.48 E-value=5.7 Score=20.08 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=11.2
Q ss_pred CCCCcEEEcCCCc-cc
Q 048828 281 CQNLISFRASHNK-LT 295 (367)
Q Consensus 281 ~~~L~~L~l~~n~-i~ 295 (367)
|++|++|++++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5778888888884 55
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.92 E-value=4.2 Score=38.19 Aligned_cols=67 Identities=27% Similarity=0.212 Sum_probs=45.3
Q ss_pred CCCCCCeEEccCCeeccc--cCcccccCCCCcEEEcCCC--cccCCcchhhhhhcccceeEeccCCeeeecc
Q 048828 256 NLTKLADLALSFNNLQGN--IPSSLGNCQNLISFRASHN--KLTGALPYQLLSITTLSLYLDLSYNLLNGSL 323 (367)
Q Consensus 256 ~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n--~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~ 323 (367)
+.+.+..+++++|++... ....-...|+|+.|+|++| .+....-..-.+...+ ++|-+.||++..+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~L-eel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPL-EELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCH-HHeeecCCccccch
Confidence 568889999999988632 2233445799999999999 5542222222233456 89999999986443
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.35 E-value=35 Score=31.79 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=53.8
Q ss_pred CCCCcEEEccCcccCCCCccccCC--CCCCcEEEccCccccCCcchhc---cCCCCcceeecccccccccCChhh--hhC
Q 048828 9 LSALGILLIRWNSLGGQIPTTLGL--LRNLVYLNVAENQFSGMFPRWI---CNISSLELIYLTVNRFSGSLPFDI--LVN 81 (367)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~i~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~--~~~ 81 (367)
-+.++.++++.|.+....+..+.. ++ +.++.|..+...-..+ ..-..+.+++++.|...+.++... .+.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 456788899988887666555432 22 4455554432111100 111346677777776665555332 222
Q ss_pred CCCccEEEccCCccee-e--CcccccCCCCCcEEeCCCCc
Q 048828 82 LPNLKELGVGGNNFVG-S--IPDSLSNASNLERLDLPGNQ 118 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~-~--~~~~l~~l~~L~~L~l~~n~ 118 (367)
-.-++.++.+...+.. . .+-....-.+|+..+++.|.
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 3456666666655431 1 11122334566666666554
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.57 E-value=16 Score=41.50 Aligned_cols=32 Identities=22% Similarity=0.119 Sum_probs=21.4
Q ss_pred EccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 264 ALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 264 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
||++|.|.......|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46677777555556666777777777777665
Done!