Query 048828
Match_columns 367
No_of_seqs 221 out of 2610
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 00:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.4E-39 4.8E-44 320.3 28.3 341 3-346 311-742 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.7E-39 1.6E-43 316.6 28.9 333 2-336 285-709 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 3.8E-38 1.3E-42 292.8 26.1 314 10-325 30-413 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 8.1E-38 2.8E-42 292.3 24.6 316 2-328 26-341 (477)
5 4eco_A Uncharacterized protein 100.0 3.2E-37 1.1E-41 297.2 21.8 313 2-328 198-586 (636)
6 3t6q_A CD180 antigen; protein- 100.0 6.2E-36 2.1E-40 287.7 27.4 314 3-320 50-438 (606)
7 4eco_A Uncharacterized protein 100.0 1.4E-36 4.8E-41 292.7 22.5 309 2-321 239-601 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-36 9.2E-41 290.2 23.5 118 4-122 50-168 (606)
9 3t6q_A CD180 antigen; protein- 100.0 1.7E-35 5.7E-40 284.7 28.1 308 11-328 255-568 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-35 5E-40 285.1 26.4 143 1-146 25-168 (606)
11 3v47_A TOLL-like receptor 5B a 100.0 1.5E-35 5.1E-40 275.3 24.7 320 13-343 13-406 (455)
12 4ecn_A Leucine-rich repeat pro 100.0 9.6E-36 3.3E-40 292.2 22.6 311 2-328 440-826 (876)
13 2id5_A Lingo-1, leucine rich r 100.0 2.7E-35 9.2E-40 275.2 23.8 317 3-329 49-365 (477)
14 2z63_A TOLL-like receptor 4, v 100.0 3.4E-35 1.2E-39 280.5 25.0 119 5-124 47-166 (570)
15 3o6n_A APL1; leucine-rich repe 100.0 5.6E-35 1.9E-39 266.0 24.4 299 6-331 65-363 (390)
16 2z63_A TOLL-like receptor 4, v 100.0 2.8E-35 9.5E-40 281.2 22.4 326 2-333 22-520 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 5E-35 1.7E-39 276.3 23.8 134 1-143 14-150 (520)
18 1ziw_A TOLL-like receptor 3; i 100.0 3E-34 1E-38 279.5 27.1 238 2-242 19-304 (680)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-34 6.3E-39 274.8 25.0 311 2-326 46-491 (562)
20 4g8a_A TOLL-like receptor 4; l 100.0 2.8E-34 9.7E-39 277.5 26.3 325 2-329 46-589 (635)
21 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-33 5.3E-38 274.5 31.2 223 99-329 397-632 (680)
22 4ecn_A Leucine-rich repeat pro 100.0 1.3E-34 4.4E-39 284.3 21.3 309 26-350 440-824 (876)
23 3oja_B Anopheles plasmodium-re 100.0 4.4E-34 1.5E-38 273.7 24.4 299 6-331 71-369 (597)
24 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-33 4.3E-38 280.7 26.8 286 4-295 42-375 (844)
25 2z81_A CD282 antigen, TOLL-lik 100.0 7.8E-34 2.7E-38 269.9 23.9 167 163-335 312-501 (549)
26 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-34 1.4E-38 284.2 22.3 267 3-270 66-374 (844)
27 3o6n_A APL1; leucine-rich repe 100.0 2.4E-33 8.3E-38 255.2 24.9 292 8-324 43-334 (390)
28 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5.2E-37 246.1 28.4 296 6-333 40-335 (347)
29 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-33 1.6E-37 262.8 24.2 126 13-145 3-129 (520)
30 1o6v_A Internalin A; bacterial 100.0 2.7E-32 9.1E-37 254.0 27.5 287 5-320 63-388 (466)
31 4fmz_A Internalin; leucine ric 100.0 4.4E-32 1.5E-36 243.0 27.9 286 5-320 61-346 (347)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-32 5.4E-37 261.4 26.2 321 9-350 30-491 (562)
33 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-33 1.7E-37 264.5 22.2 318 3-325 43-515 (549)
34 3oja_B Anopheles plasmodium-re 100.0 1.8E-32 6.2E-37 262.5 24.9 292 8-324 49-340 (597)
35 1xku_A Decorin; proteoglycan, 100.0 7.6E-32 2.6E-36 239.7 27.0 291 11-318 32-330 (330)
36 2ft3_A Biglycan; proteoglycan, 100.0 3.2E-32 1.1E-36 242.3 22.6 289 11-317 34-330 (332)
37 1o6v_A Internalin A; bacterial 100.0 2.4E-31 8.2E-36 247.5 28.8 288 8-324 44-370 (466)
38 1xku_A Decorin; proteoglycan, 100.0 3.8E-31 1.3E-35 235.2 25.3 275 2-293 46-330 (330)
39 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-32 2E-36 238.3 17.8 256 34-324 50-308 (313)
40 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-31 1.3E-35 235.4 21.3 274 2-293 48-331 (332)
41 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-31 6E-36 235.3 17.8 249 10-293 50-302 (313)
42 4g8a_A TOLL-like receptor 4; l 100.0 5E-29 1.7E-33 240.7 29.0 151 16-175 37-187 (635)
43 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-29 8.6E-34 232.4 24.2 281 4-321 36-353 (457)
44 2z66_A Variable lymphocyte rec 100.0 5E-29 1.7E-33 219.2 21.9 279 13-329 10-296 (306)
45 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-28 4.4E-33 227.7 24.9 291 2-330 57-397 (457)
46 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-32 9.3E-37 253.8 -1.8 284 35-321 86-412 (461)
47 2z66_A Variable lymphocyte rec 100.0 8.5E-29 2.9E-33 217.7 20.0 252 37-325 10-266 (306)
48 2z80_A TOLL-like receptor 2, v 100.0 4.9E-29 1.7E-33 223.7 18.3 282 31-324 28-318 (353)
49 3zyj_A Leucine-rich repeat-con 100.0 4.7E-28 1.6E-32 223.7 23.7 252 36-324 45-296 (440)
50 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-32 6.4E-37 254.9 -6.0 337 6-347 24-413 (461)
51 2z80_A TOLL-like receptor 2, v 100.0 9.3E-29 3.2E-33 221.9 17.6 281 8-299 29-318 (353)
52 3zyi_A Leucine-rich repeat-con 100.0 1.6E-27 5.4E-32 220.9 23.8 248 36-295 56-303 (452)
53 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-27 4.9E-32 207.7 21.7 256 37-329 14-270 (285)
54 1jl5_A Outer protein YOPM; leu 100.0 5.2E-28 1.8E-32 223.5 18.6 236 59-329 132-381 (454)
55 3zyi_A Leucine-rich repeat-con 100.0 3.2E-27 1.1E-31 218.8 22.2 247 12-271 56-303 (452)
56 3zyj_A Leucine-rich repeat-con 100.0 3.6E-27 1.2E-31 217.7 22.3 247 12-271 45-292 (440)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-27 5E-32 207.6 17.9 256 13-304 14-270 (285)
58 3o53_A Protein LRIM1, AGAP0063 99.9 8.7E-28 3E-32 212.2 12.2 264 39-325 15-281 (317)
59 4fcg_A Uncharacterized protein 99.9 6.4E-27 2.2E-31 207.3 17.5 225 83-319 81-313 (328)
60 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-28 9.8E-33 215.2 8.7 269 11-300 11-281 (317)
61 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 4.1E-31 214.3 18.9 249 9-296 10-291 (454)
62 4fcg_A Uncharacterized protein 99.9 1.1E-26 3.7E-31 205.9 17.8 230 59-295 82-314 (328)
63 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-25 5.3E-30 213.2 26.5 267 10-329 40-306 (622)
64 3oja_A Leucine-rich immune mol 99.9 7.3E-26 2.5E-30 211.0 16.9 234 59-315 35-270 (487)
65 1wwl_A Monocyte differentiatio 99.9 1.1E-27 3.7E-32 211.0 4.1 250 31-296 40-310 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-24 5.5E-29 206.2 25.7 255 1-306 54-308 (622)
67 1wwl_A Monocyte differentiatio 99.9 4.3E-27 1.5E-31 207.2 5.6 250 53-321 38-310 (312)
68 3oja_A Leucine-rich immune mol 99.9 1E-25 3.5E-30 210.0 12.5 238 32-290 32-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 6.7E-24 2.3E-28 183.6 20.0 209 58-299 28-241 (276)
70 2z62_A TOLL-like receptor 4, v 99.9 4.7E-24 1.6E-28 184.6 18.4 226 63-325 12-242 (276)
71 3goz_A Leucine-rich repeat-con 99.9 4.2E-26 1.4E-30 205.2 4.9 265 15-303 3-305 (362)
72 1p9a_G Platelet glycoprotein I 99.9 3.7E-23 1.3E-27 179.8 20.7 204 54-296 6-209 (290)
73 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.6E-27 175.4 21.5 203 83-295 16-218 (270)
74 2o6q_A Variable lymphocyte rec 99.9 1.3E-22 4.6E-27 174.7 21.6 202 59-271 17-218 (270)
75 3rfs_A Internalin B, repeat mo 99.9 2.7E-23 9.1E-28 179.3 16.9 228 59-332 20-247 (272)
76 3rfs_A Internalin B, repeat mo 99.9 6.5E-24 2.2E-28 183.2 12.5 230 34-308 19-248 (272)
77 2ca6_A RAN GTPase-activating p 99.9 1.8E-25 6.3E-30 202.8 2.2 252 26-304 24-327 (386)
78 3goz_A Leucine-rich repeat-con 99.9 1.4E-24 4.7E-29 195.3 7.3 250 3-275 15-301 (362)
79 3ogk_B Coronatine-insensitive 99.9 1.1E-25 3.7E-30 215.8 -0.2 306 8-322 162-528 (592)
80 1p9a_G Platelet glycoprotein I 99.9 5.3E-22 1.8E-26 172.5 20.4 204 29-271 5-208 (290)
81 3ogk_B Coronatine-insensitive 99.9 3.9E-25 1.3E-29 211.9 0.6 292 4-303 186-534 (592)
82 2ca6_A RAN GTPase-activating p 99.9 1.9E-24 6.4E-29 196.2 4.8 242 80-324 29-320 (386)
83 2ast_B S-phase kinase-associat 99.9 1.2E-23 4E-28 187.4 9.5 235 83-329 70-315 (336)
84 2ast_B S-phase kinase-associat 99.9 4.4E-24 1.5E-28 190.2 6.0 256 35-304 48-315 (336)
85 2xwt_C Thyrotropin receptor; s 99.9 8.1E-22 2.8E-26 166.7 15.1 199 59-292 32-236 (239)
86 2xwt_C Thyrotropin receptor; s 99.9 7.5E-22 2.6E-26 166.9 13.9 198 34-245 31-237 (239)
87 4glp_A Monocyte differentiatio 99.9 3.7E-22 1.3E-26 175.5 10.6 231 34-272 64-308 (310)
88 1h6u_A Internalin H; cell adhe 99.9 2.4E-21 8.4E-26 170.0 15.3 193 55-271 38-230 (308)
89 2p1m_B Transport inhibitor res 99.9 1.2E-23 4.3E-28 201.5 -1.3 112 6-117 101-221 (594)
90 1h6u_A Internalin H; cell adhe 99.9 9.7E-21 3.3E-25 166.2 16.6 210 60-295 21-230 (308)
91 2p1m_B Transport inhibitor res 99.9 4.7E-24 1.6E-28 204.5 -5.4 318 5-325 61-499 (594)
92 3m19_A Variable lymphocyte rec 99.9 3.5E-20 1.2E-24 157.8 19.1 181 83-297 14-194 (251)
93 4ay9_X Follicle-stimulating ho 99.9 1.6E-20 5.6E-25 167.8 17.8 247 6-268 6-256 (350)
94 4glp_A Monocyte differentiatio 99.9 3.6E-21 1.2E-25 169.2 13.1 231 9-248 63-308 (310)
95 3m19_A Variable lymphocyte rec 99.9 2.8E-20 9.7E-25 158.4 17.8 160 161-322 35-194 (251)
96 4ay9_X Follicle-stimulating ho 99.8 5.6E-20 1.9E-24 164.4 17.7 241 37-292 12-256 (350)
97 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 149.3 12.2 181 13-211 10-190 (208)
98 2v9t_B SLIT homolog 2 protein 99.8 3.4E-19 1.2E-23 148.4 14.1 160 164-328 14-173 (220)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-19 1.1E-23 148.6 13.3 159 164-327 14-173 (220)
100 2o6s_A Variable lymphocyte rec 99.8 9.2E-19 3.2E-23 144.6 15.9 163 161-332 28-190 (208)
101 3sb4_A Hypothetical leucine ri 99.8 1.1E-19 3.9E-24 160.9 10.4 289 9-312 24-326 (329)
102 2v9t_B SLIT homolog 2 protein 99.8 1.4E-18 4.9E-23 144.6 13.2 152 13-174 14-165 (220)
103 3e6j_A Variable lymphocyte rec 99.8 4.2E-18 1.4E-22 142.7 14.8 134 188-323 42-175 (229)
104 3cvr_A Invasion plasmid antige 99.8 8.1E-18 2.8E-22 158.3 17.2 188 84-306 60-254 (571)
105 3cvr_A Invasion plasmid antige 99.8 1.2E-17 4.3E-22 157.1 18.1 187 59-281 60-253 (571)
106 1m9s_A Internalin B; cell inva 99.8 3.9E-18 1.4E-22 162.1 14.2 189 36-272 23-211 (605)
107 2xot_A Amphoterin-induced prot 99.8 7.5E-18 2.6E-22 151.2 15.0 136 188-323 66-205 (361)
108 1h6t_A Internalin B; cell adhe 99.8 5.9E-18 2E-22 147.1 13.8 170 82-272 45-214 (291)
109 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 140.3 14.4 154 12-176 21-174 (229)
110 1h6t_A Internalin B; cell adhe 99.8 7.1E-18 2.4E-22 146.6 13.6 171 56-248 44-214 (291)
111 3sb4_A Hypothetical leucine ri 99.8 1.2E-18 4.1E-23 154.4 8.4 282 33-332 24-321 (329)
112 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4E-22 158.8 12.9 191 11-225 22-212 (605)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 7.4E-17 2.5E-21 134.2 16.3 139 162-300 33-171 (220)
114 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.3E-22 136.0 11.9 111 205-320 83-194 (197)
115 2xot_A Amphoterin-induced prot 99.7 8.4E-18 2.9E-22 150.8 11.2 180 13-199 21-202 (361)
116 4fdw_A Leucine rich hypothetic 99.7 3.5E-16 1.2E-20 141.6 21.3 266 33-319 112-382 (401)
117 4fdw_A Leucine rich hypothetic 99.7 1E-15 3.4E-20 138.6 22.2 267 8-295 111-383 (401)
118 4ezg_A Putative uncharacterize 99.7 3.6E-17 1.2E-21 133.8 11.5 153 31-199 41-194 (197)
119 1w8a_A SLIT protein; signaling 99.7 2.1E-16 7.1E-21 128.6 11.3 158 164-327 11-169 (192)
120 1xeu_A Internalin C; cellular 99.7 4.5E-16 1.5E-20 133.1 13.3 169 9-200 18-186 (263)
121 1w8a_A SLIT protein; signaling 99.7 4.1E-16 1.4E-20 126.9 12.4 136 188-327 10-146 (192)
122 1xeu_A Internalin C; cellular 99.7 2E-16 6.9E-21 135.3 10.4 170 105-296 17-186 (263)
123 1dce_A Protein (RAB geranylger 99.7 4.4E-19 1.5E-23 167.7 -7.0 104 188-296 443-547 (567)
124 4fs7_A Uncharacterized protein 99.7 7.8E-15 2.7E-19 133.1 20.6 129 5-140 66-194 (394)
125 2ell_A Acidic leucine-rich nuc 99.7 5.4E-16 1.9E-20 123.4 10.5 132 9-143 23-159 (168)
126 2ell_A Acidic leucine-rich nuc 99.6 4E-16 1.4E-20 124.1 9.4 134 188-325 26-164 (168)
127 1dce_A Protein (RAB geranylger 99.6 6.5E-19 2.2E-23 166.5 -8.2 122 162-289 442-567 (567)
128 2wfh_A SLIT homolog 2 protein 99.6 1.6E-15 5.4E-20 123.4 12.7 127 164-295 13-139 (193)
129 2je0_A Acidic leucine-rich nuc 99.6 7.9E-16 2.7E-20 119.8 9.5 129 8-139 15-148 (149)
130 4b8c_D Glucose-repressible alc 99.6 1.5E-16 5.1E-21 154.9 5.7 192 10-220 173-369 (727)
131 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 117.9 9.3 128 186-316 17-149 (149)
132 2o6r_A Variable lymphocyte rec 99.6 6E-15 2E-19 118.3 12.4 134 162-299 8-141 (177)
133 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.7E-19 118.4 13.4 125 13-142 13-137 (193)
134 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 116.7 12.7 133 188-324 9-141 (177)
135 4b8c_D Glucose-repressible alc 99.6 6.5E-16 2.2E-20 150.4 5.9 136 188-327 226-361 (727)
136 1a9n_A U2A', U2A'; complex (nu 99.6 2.6E-15 8.8E-20 120.4 7.9 110 6-120 15-126 (176)
137 4fs7_A Uncharacterized protein 99.6 1.5E-13 5.2E-18 124.6 19.5 288 4-316 88-375 (394)
138 4gt6_A Cell surface protein; l 99.6 1.6E-12 5.3E-17 117.9 25.2 295 5-319 58-369 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-14 8.4E-19 114.6 8.7 131 158-294 16-152 (176)
140 4gt6_A Cell surface protein; l 99.5 2.4E-12 8.2E-17 116.7 21.9 300 4-319 81-390 (394)
141 3g39_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 106.6 10.5 107 188-297 11-117 (170)
142 1ds9_A Outer arm dynein; leuci 99.4 3.3E-15 1.1E-19 122.1 -3.7 161 6-174 14-185 (198)
143 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 103.5 11.1 105 12-120 11-115 (170)
144 4h09_A Hypothetical leucine ri 99.4 6.6E-11 2.3E-15 106.6 23.4 309 6-332 42-356 (379)
145 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 104.1 10.5 106 188-296 14-119 (174)
146 3un9_A NLR family member X1; l 99.4 2.9E-14 9.8E-19 127.8 0.0 144 161-304 101-261 (372)
147 1ds9_A Outer arm dynein; leuci 99.4 4.3E-15 1.5E-19 121.5 -5.0 105 188-297 50-155 (198)
148 2r9u_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 101.6 12.1 104 164-271 15-118 (174)
149 3un9_A NLR family member X1; l 99.4 2.4E-14 8.1E-19 128.3 -3.1 187 58-247 72-283 (372)
150 4h09_A Hypothetical leucine ri 99.3 5.8E-10 2E-14 100.5 22.7 268 5-292 64-343 (379)
151 2ifg_A High affinity nerve gro 99.2 3.8E-11 1.3E-15 106.9 8.9 132 190-325 12-146 (347)
152 2ifg_A High affinity nerve gro 99.2 1.3E-10 4.6E-15 103.3 10.7 105 164-272 11-117 (347)
153 2ra8_A Uncharacterized protein 99.0 3.9E-10 1.3E-14 100.2 7.4 167 77-269 166-341 (362)
154 2ra8_A Uncharacterized protein 99.0 2.2E-10 7.5E-15 101.8 3.5 163 51-221 165-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 3.3E-09 1.1E-13 85.1 2.0 115 205-320 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 7E-09 2.4E-13 83.2 0.4 17 158-174 62-78 (185)
157 3e4g_A ATP synthase subunit S, 98.6 1.5E-08 5.1E-13 79.4 1.8 88 208-295 59-153 (176)
158 3e4g_A ATP synthase subunit S, 98.4 1E-07 3.4E-12 74.7 3.6 84 34-118 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 5.9E-07 2E-11 75.8 4.5 83 31-114 167-258 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.2E-07 4.1E-12 80.0 -0.7 106 31-138 138-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 4.2E-06 1.4E-10 66.8 2.8 40 232-271 68-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1.1E-05 3.8E-10 64.3 1.6 14 256-269 155-168 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0066 2.3E-07 44.9 6.2 56 238-295 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.0076 2.6E-07 44.6 5.2 66 261-329 11-77 (130)
165 2lz0_A Uncharacterized protein 85.4 1.7 5.9E-05 30.0 5.3 41 74-115 11-51 (100)
166 2lz0_A Uncharacterized protein 80.7 4.8 0.00017 27.7 6.1 42 201-243 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-39 Score=320.32 Aligned_cols=341 Identities=32% Similarity=0.485 Sum_probs=179.0
Q ss_pred CchhccCCCCcEEEccCcccCCCCccc-cCCCCCCcEEEccCccccCCcchhccCCC-CcceeecccccccccCChhhhh
Q 048828 3 PDFIGNLSALGILLIRWNSLGGQIPTT-LGLLRNLVYLNVAENQFSGMFPRWICNIS-SLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
|..|+++++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+.++..+..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 344444444444444444444333332 44444444444444444434444443333 3444444444433333222211
Q ss_pred -CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCC--------
Q 048828 81 -NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDL-------- 151 (367)
Q Consensus 81 -~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------- 151 (367)
.+++|++|++++|.+...+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 13455555555555555555566666666666666666655555555566666666666555543222100
Q ss_pred ----------ccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCc
Q 048828 152 ----------DFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQ 221 (367)
Q Consensus 152 ----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 221 (367)
..+..+..+++|++|++++|.+.+.+|..+..++. |+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 11123444555555555555555555555544443 5555555555555555555556666666666555
Q ss_pred cccccccc----------------------------------------------------------------------cc
Q 048828 222 LHGTIPDV----------------------------------------------------------------------IG 231 (367)
Q Consensus 222 ~~~~~~~~----------------------------------------------------------------------~~ 231 (367)
+++..|.. +.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 54333321 12
Q ss_pred CccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhccccee
Q 048828 232 ELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLY 311 (367)
Q Consensus 232 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~ 311 (367)
.+++|+.|++++|++++.+|..++.++.|+.|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+..+..+ ++
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L-~~ 708 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML-TE 708 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC-SE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-CE
Confidence 23456666666666666666666666666666666666666666666666666666666666666666666666655 66
Q ss_pred EeccCCeeeeccCccccCCCCCCCCCcCCccchhh
Q 048828 312 LDLSYNLLNGSLPLQMFTGRRPTDSAFTEGLTLHE 346 (367)
Q Consensus 312 L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~l~~ 346 (367)
|++++|+++|.+|..- .........|.++..+..
T Consensus 709 L~ls~N~l~g~iP~~~-~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMG-QFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EECCSSEEEEECCSSS-SGGGSCGGGGCSCTEEES
T ss_pred EECcCCcccccCCCch-hhccCCHHHhcCCchhcC
Confidence 6666666666666531 111222333445544544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-39 Score=316.58 Aligned_cols=333 Identities=31% Similarity=0.470 Sum_probs=192.7
Q ss_pred CCchhccC-CCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchh-ccCCCCcceeecccccccccCChhhh
Q 048828 2 LPDFIGNL-SALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRW-ICNISSLELIYLTVNRFSGSLPFDIL 79 (367)
Q Consensus 2 l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~ 79 (367)
+|+.+.+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+.
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 364 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH
T ss_pred cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH
Confidence 34444332 55555555555555555555555555555555555554333332 55555555555555555544444432
Q ss_pred hCCCCccEEEccCCcceeeCcccccC--CCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCC------
Q 048828 80 VNLPNLKELGVGGNNFVGSIPDSLSN--ASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDL------ 151 (367)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~------ 151 (367)
...++|++|++++|.+....+..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+
T Consensus 365 ~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 444 (768)
T 3rgz_A 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444 (768)
T ss_dssp HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCC
Confidence 22225666666666555555555544 6678888888888877778888888999999999988764433211
Q ss_pred ------------ccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccC
Q 048828 152 ------------DFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDS 219 (367)
Q Consensus 152 ------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 219 (367)
..+..+..+++|+.|++++|.+.+..|..+..+.. |+.|++++|++.+..|..+..+++|++|++++
T Consensus 445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC-CCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 11122333444444444444444444444443333 55555555555555555555555555555555
Q ss_pred CcccccccccccCccCCcEEEccCccccccCCcc----------------------------------------------
Q 048828 220 NQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPS---------------------------------------------- 253 (367)
Q Consensus 220 n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~---------------------------------------------- 253 (367)
|.+++..|..+..+++|+.|++++|.+++.+|..
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh
Confidence 5555555555555555666666555554333321
Q ss_pred ------------------------ccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccc
Q 048828 254 ------------------------LGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLS 309 (367)
Q Consensus 254 ------------------------l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll 309 (367)
++.+++|+.|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+..+..+
T Consensus 604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L- 682 (768)
T 3rgz_A 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL- 682 (768)
T ss_dssp GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-
T ss_pred hhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC-
Confidence 2223456666666666666666677777777777777777777777777777666
Q ss_pred eeEeccCCeeeeccCccccCCCCCCCC
Q 048828 310 LYLDLSYNLLNGSLPLQMFTGRRPTDS 336 (367)
Q Consensus 310 ~~L~l~~n~i~~~~p~~~~~~~~~~~~ 336 (367)
++||+++|.++|.+|..+.....+..+
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEE
Confidence 777777777777777776666554333
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-38 Score=292.83 Aligned_cols=314 Identities=22% Similarity=0.232 Sum_probs=249.8
Q ss_pred CCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccC-CcchhccCCCCcceeecccccccccCChhhhhCCCCccEE
Q 048828 10 SALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSG-MFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKEL 88 (367)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 88 (367)
++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..|.++++|++|++++|.+. .+....+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-ccChhhccCcccCCEE
Confidence 678888888888887778888888888899888888753 34567888888888888888887 4444455788888888
Q ss_pred EccCCcceeeCccc--ccCCCCCcEEeCCCCccccccccc-ccCCCCCCeEEcCCCcccCcCCCCCccc-----------
Q 048828 89 GVGGNNFVGSIPDS--LSNASNLERLDLPGNQFKGKVSID-FSSLKNLWWLNLEQNNLGMGTANDLDFV----------- 154 (367)
Q Consensus 89 ~l~~~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~----------- 154 (367)
++++|.+....+.. +.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.......+...
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 88888877534433 788888888888888888776655 7888888888888888765544322211
Q ss_pred -----------------cccCCCCCCcEEEcccCccccccChhhhhh---------------------------------
Q 048828 155 -----------------TSLTNCSSLKSLSLYDNQFGGELPHSIANL--------------------------------- 184 (367)
Q Consensus 155 -----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------------------------------- 184 (367)
..+..+++|++|++++|.+.+..+..+...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 112345789999999998776555544332
Q ss_pred -----cccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCC
Q 048828 185 -----SSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTK 259 (367)
Q Consensus 185 -----~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 259 (367)
..+++.+++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 135888888888888888888999999999999999998777888888999999999999998777888888999
Q ss_pred CCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCc
Q 048828 260 LADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 260 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..++.+ ++|++++|+++|++|.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc-cEEEccCCCcccCCCc
Confidence 9999999999988778889999999999999999986555556677777 9999999999988883
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=292.26 Aligned_cols=316 Identities=22% Similarity=0.195 Sum_probs=278.0
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
||..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....|.+|.++++|++|++++|.+. .++...|.+
T Consensus 26 ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 102 (477)
T 2id5_A 26 VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTG 102 (477)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTT
T ss_pred CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccC
Confidence 566554 68999999999999888889999999999999999999888999999999999999999998 888888889
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCC
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCS 161 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (367)
+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.++.... ..+..++
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~l~~l~ 176 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT------EALSHLH 176 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH------HHHTTCT
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh------hHhcccC
Confidence 9999999999999998888899999999999999999998888889999999999999998865432 4577889
Q ss_pred CCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEc
Q 048828 162 SLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFL 241 (367)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 241 (367)
+|+.|++.+|.+.+..+..+..+. +|+.|++++|...+..+.......+|++|++++|.+++..+..+..+++|+.|++
T Consensus 177 ~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 177 GLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp TCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 999999999999865555555554 4999999998877667766666679999999999999655567889999999999
Q ss_pred cCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeee
Q 048828 242 FRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNG 321 (367)
Q Consensus 242 ~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~ 321 (367)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..++.+ ++|++++|++.|
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l~c 334 (477)
T 2id5_A 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL-ETLILDSNPLAC 334 (477)
T ss_dssp CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC-CEEECCSSCEEC
T ss_pred CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc-CEEEccCCCccC
Confidence 9999998888889999999999999999998888899999999999999999996666666777777 999999999998
Q ss_pred ccCcccc
Q 048828 322 SLPLQMF 328 (367)
Q Consensus 322 ~~p~~~~ 328 (367)
+++..|+
T Consensus 335 ~c~~~~~ 341 (477)
T 2id5_A 335 DCRLLWV 341 (477)
T ss_dssp SGGGHHH
T ss_pred ccchHhH
Confidence 8876554
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-37 Score=297.17 Aligned_cols=313 Identities=20% Similarity=0.238 Sum_probs=195.6
Q ss_pred CCchhccCCCCcEEEccCcccCCC-----------------CccccC--CCCCCcEEEccCccccCCcchhccCCCCcce
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQ-----------------IPTTLG--LLRNLVYLNVAENQFSGMFPRWICNISSLEL 62 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 62 (367)
||+.++++++|++|++++|.+.+. +|..+. ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 678888888888888888888874 777777 8888888888888888888888888888888
Q ss_pred eeccccc-ccc-cCChhhhh-----CCCCccEEEccCCcceeeCcc--cccCCCCCcEEeCCCCcccccccccccCCCCC
Q 048828 63 IYLTVNR-FSG-SLPFDILV-----NLPNLKELGVGGNNFVGSIPD--SLSNASNLERLDLPGNQFKGKVSIDFSSLKNL 133 (367)
Q Consensus 63 L~l~~~~-~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 133 (367)
|++++|. +.+ .+|..+.. .+++|++|++++|.++ .+|. .+.++++|++|++++|.+.+..| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 8888887 775 56655531 2378888888888887 6776 77888888888888888775666 66666777
Q ss_pred CeEEcCCCcccCcCCCCCccccccCCCCC-CcEEEcccCccccccChhhhhhc-ccceEEEecCCcccccCCcc------
Q 048828 134 WWLNLEQNNLGMGTANDLDFVTSLTNCSS-LKSLSLYDNQFGGELPHSIANLS-STMIQFSIGGNQISGTIPPG------ 205 (367)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~------ 205 (367)
++|++++|.++. ++..+..+++ |++|++++|.+. .+|..+.... .+++.|++++|.+.+..|..
T Consensus 356 ~~L~L~~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 356 ASLNLAYNQITE-------IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp SEEECCSSEEEE-------CCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CEEECCCCcccc-------ccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 777777776651 1123444455 555555555555 4444333221 12444444444444443333
Q ss_pred -------------------------ccCCCCCcEEEccCCcccccccccccCc-------cCCcEEEccCccccccCCcc
Q 048828 206 -------------------------IRNLVNLVALTMDSNQLHGTIPDVIGEL-------KNLQVLFLFRNFLQGSIPPS 253 (367)
Q Consensus 206 -------------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~L~~L~l~~~~i~~~~~~~ 253 (367)
+..+++|++|++++|.++......+... ++|+.|++++|.++ .+|..
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 3445555555555555552222222211 15555566655555 34444
Q ss_pred cc--CCCCCCeEEccCCeeccccCcccccCCCCcEEEc------CCCcccCCcchhhhhhcccceeEeccCCeeeeccCc
Q 048828 254 LG--NLTKLADLALSFNNLQGNIPSSLGNCQNLISFRA------SHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 254 l~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l------~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
+. .+++|+.|++++|.+++ +|..+..+++|+.|++ ++|++.+.+|..+..++.+ ++|++++|.+ +.+|.
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL-TQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC-CEEECCSSCC-CBCCS
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCC-CEEECCCCcC-CccCH
Confidence 43 55666666666666654 5555555666666666 3445555566666555555 6666666666 35565
Q ss_pred ccc
Q 048828 326 QMF 328 (367)
Q Consensus 326 ~~~ 328 (367)
.++
T Consensus 584 ~~~ 586 (636)
T 4eco_A 584 KIT 586 (636)
T ss_dssp CCC
T ss_pred hHh
Confidence 544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-36 Score=287.67 Aligned_cols=314 Identities=22% Similarity=0.226 Sum_probs=170.8
Q ss_pred CchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCC
Q 048828 3 PDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNL 82 (367)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 82 (367)
|..|+++++|++|++++|.+.+..+..|.++++|++|++++|.+....|.+|.++++|++|++++|.+. .++...+..+
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l 128 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQ 128 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccC
Confidence 456777777777777777777666777777777777777777776666677777777777777777776 4433445667
Q ss_pred CCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCC--eEEcCCCcccCcCCCCCcc-------
Q 048828 83 PNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLW--WLNLEQNNLGMGTANDLDF------- 153 (367)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~------- 153 (367)
++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+ +|++++|.+....+..+..
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 7777777777776643333444577777777777777666566666666666 6666666554332211100
Q ss_pred --------------------------------------------------------------ccccCCCCCCcEEEcccC
Q 048828 154 --------------------------------------------------------------VTSLTNCSSLKSLSLYDN 171 (367)
Q Consensus 154 --------------------------------------------------------------~~~~~~~~~L~~L~l~~~ 171 (367)
...+..+++|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 011344556666666666
Q ss_pred ccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCccccccc-ccccCccCCcEEEccCccccccC
Q 048828 172 QFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIP-DVIGELKNLQVLFLFRNFLQGSI 250 (367)
Q Consensus 172 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~ 250 (367)
.+. .+|..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+++..
T Consensus 289 ~l~-~lp~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 289 HLS-ELPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp CCS-CCCSSCCSCTT-CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred ccC-CCChhhccccc-CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 555 44544443333 5555555555554444444444455555554444432222 22344444444444444444322
Q ss_pred --CccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchh-hhhhcccceeEeccCCeee
Q 048828 251 --PPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQ-LLSITTLSLYLDLSYNLLN 320 (367)
Q Consensus 251 --~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~~~~ll~~L~l~~n~i~ 320 (367)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+.. +..++.+ ++|++++|.++
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~ 438 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLD 438 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCB
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccC
Confidence 333444444444444444444333344444444444444444444332222 2333333 44444444444
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-36 Score=292.65 Aligned_cols=309 Identities=19% Similarity=0.262 Sum_probs=245.5
Q ss_pred CCchhc--cCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCcc-ccC-CcchhccCC------CCcceeeccccccc
Q 048828 2 LPDFIG--NLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQ-FSG-MFPRWICNI------SSLELIYLTVNRFS 71 (367)
Q Consensus 2 l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~l------~~L~~L~l~~~~~~ 71 (367)
||+.++ ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 788888 99999999999999998999999999999999999998 876 678777665 88999999998887
Q ss_pred ccCCh-hhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCC-CCeEEcCCCcccCcCCC
Q 048828 72 GSLPF-DILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKN-LWWLNLEQNNLGMGTAN 149 (367)
Q Consensus 72 ~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~ 149 (367)
.+|. ..+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. ..|..+..+++ |++|++++|.++....
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~- 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPN- 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCS-
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccch-
Confidence 7776 245788888888888888876666 6777777777777777766 45555666666 7777777666552221
Q ss_pred CCc--------------------cccccC-------CCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccC
Q 048828 150 DLD--------------------FVTSLT-------NCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTI 202 (367)
Q Consensus 150 ~~~--------------------~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 202 (367)
.+. .+..+. .+++|+.|++++|.+. .+|..+....++++.|++++|.+....
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 110 011223 5568889999999888 677766654456999999999998544
Q ss_pred CccccCC-------CCCcEEEccCCccccccccccc--CccCCcEEEccCccccccCCccccCCCCCCeEEc------cC
Q 048828 203 PPGIRNL-------VNLVALTMDSNQLHGTIPDVIG--ELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLAL------SF 267 (367)
Q Consensus 203 ~~~l~~~-------~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l------~~ 267 (367)
+..+... ++|++|++++|.++ ..|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 4444433 39999999999999 6777676 89999999999999996 7888889999999999 56
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeee
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNG 321 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~ 321 (367)
|.+.+..|..+..+++|+.|++++|++ +.+|..+. +.+ ++|++++|++.+
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L-~~L~Ls~N~l~~ 601 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNI-SVLDIKDNPNIS 601 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTC-CEEECCSCTTCE
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcC-CEEECcCCCCcc
Confidence 777778899999999999999999999 58898765 456 999999998874
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-36 Score=290.22 Aligned_cols=118 Identities=24% Similarity=0.211 Sum_probs=87.0
Q ss_pred chhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCC
Q 048828 4 DFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLP 83 (367)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (367)
..|+++++|++|++++|.+.+..+.+|.++++|++|++++|.+....|..|.++++|++|++++|.+. .++...+..++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 128 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLI 128 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCC
Confidence 36777778888888877777666777777778888888888777666777777888888888887776 45544456777
Q ss_pred CccEEEccCCccee-eCcccccCCCCCcEEeCCCCccccc
Q 048828 84 NLKELGVGGNNFVG-SIPDSLSNASNLERLDLPGNQFKGK 122 (367)
Q Consensus 84 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 122 (367)
+|++|++++|.+.. .+|..+.++++|++|++++|.+.+.
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 88888888777764 3577777788888888877766544
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-35 Score=284.70 Aligned_cols=308 Identities=19% Similarity=0.217 Sum_probs=270.2
Q ss_pred CCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEc
Q 048828 11 ALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90 (367)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 90 (367)
+|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEEC
Confidence 7899999999999888888999999999999999998 77888999999999999999998 555556689999999999
Q ss_pred cCCcceeeCc-ccccCCCCCcEEeCCCCcccccc--cccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEE
Q 048828 91 GGNNFVGSIP-DSLSNASNLERLDLPGNQFKGKV--SIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLS 167 (367)
Q Consensus 91 ~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 167 (367)
++|.+...++ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+....+ ..+..+++|++|+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT------EAFKECPQLELLD 406 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT------TTTTTCTTCSEEE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH------HHhcCCccCCeEE
Confidence 9998875554 45899999999999999998765 6678999999999999998865433 4677889999999
Q ss_pred cccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCccccc---ccccccCccCCcEEEccCc
Q 048828 168 LYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGT---IPDVIGELKNLQVLFLFRN 244 (367)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~~ 244 (367)
+++|.+.+..+........+++.|++++|.+....+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 9999988665554333334599999999999988899999999999999999999863 2356888999999999999
Q ss_pred cccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccC
Q 048828 245 FLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 245 ~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p 324 (367)
.+++..|..+..+++|+.|++++|.+++..+..+..+++| .|++++|++++..|..+..++.+ ++|++++|++.|+++
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ-RTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS-SEEECTTCCEECSGG
T ss_pred ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC-CEEeCCCCCccccCC
Confidence 9998888999999999999999999998889999999999 99999999998888888888888 999999999999888
Q ss_pred cccc
Q 048828 325 LQMF 328 (367)
Q Consensus 325 ~~~~ 328 (367)
..++
T Consensus 565 ~~~~ 568 (606)
T 3t6q_A 565 NIYF 568 (606)
T ss_dssp GHHH
T ss_pred cHHH
Confidence 6443
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-35 Score=285.08 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=126.4
Q ss_pred CCCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 1 QLPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 1 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
++|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...+.+|.++++|++|++++|.+. .+++..+.
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~ 101 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFS 101 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSST
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhcC
Confidence 3566655 78999999999999888889999999999999999999888889999999999999999998 56555568
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccc-cccccccCCCCCCeEEcCCCcccCc
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKG-KVSIDFSSLKNLWWLNLEQNNLGMG 146 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~ 146 (367)
++++|++|++++|.+....+..+.++++|++|++++|.+.+ ..|..+..+++|++|++++|.++..
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 99999999999999986666789999999999999999986 4588899999999999999876543
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-35 Score=275.34 Aligned_cols=320 Identities=18% Similarity=0.208 Sum_probs=252.5
Q ss_pred cEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccC
Q 048828 13 GILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (367)
+.++.+++.+. .+|. +. ++|++|++++|.+.+..+..|.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45677777766 3444 32 78999999999999888999999999999999999987677777788999999999999
Q ss_pred CcceeeCcccccCCCCCcEEeCCCCccccccccc--ccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEccc
Q 048828 93 NNFVGSIPDSLSNASNLERLDLPGNQFKGKVSID--FSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYD 170 (367)
Q Consensus 93 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (367)
|.+....|..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+....+. ..+..+++|++|++++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-----SFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC-----GGGGGCTTCCEEECTT
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc-----cccCCCCcccEEeCCC
Confidence 9999888999999999999999999998755444 89999999999999998755331 2267889999999999
Q ss_pred CccccccChhhhhhc---------------------------------ccceEEEecCCcccccCCcccc----------
Q 048828 171 NQFGGELPHSIANLS---------------------------------STMIQFSIGGNQISGTIPPGIR---------- 207 (367)
Q Consensus 171 ~~~~~~~~~~~~~~~---------------------------------~~L~~l~l~~~~~~~~~~~~l~---------- 207 (367)
|.+.+..+..+.... .+++.|++++|.+.+..+..+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 998866665554431 2477777877766543222111
Q ss_pred -----------------------------CCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCC
Q 048828 208 -----------------------------NLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLT 258 (367)
Q Consensus 208 -----------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 258 (367)
..++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 125788888888888877778888888999999999998877788888889
Q ss_pred CCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccCCCCCCCCCc
Q 048828 259 KLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFTGRRPTDSAF 338 (367)
Q Consensus 259 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~~~~~~~~~~ 338 (367)
+|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..++.+ ++|++++|.++ .+|...+.....++...
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL-KELALDTNQLK-SVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCS-CCCTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc-cEEECCCCccc-cCCHhHhccCCcccEEE
Confidence 99999999998887777888888999999999999987778888888877 99999999998 56665544333333334
Q ss_pred CCccc
Q 048828 339 TEGLT 343 (367)
Q Consensus 339 ~~~~~ 343 (367)
.+++.
T Consensus 402 l~~N~ 406 (455)
T 3v47_A 402 LHTNP 406 (455)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 44443
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.6e-36 Score=292.23 Aligned_cols=311 Identities=19% Similarity=0.261 Sum_probs=211.2
Q ss_pred CCchhccCCCCcEEEccCcccCC-----------------CCccccC--CCCCCcEEEccCccccCCcchhccCCCCcce
Q 048828 2 LPDFIGNLSALGILLIRWNSLGG-----------------QIPTTLG--LLRNLVYLNVAENQFSGMFPRWICNISSLEL 62 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 62 (367)
||..|+++++|++|+|++|.+.+ .+|..+. ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999987 2777776 8999999999999988889999999999999
Q ss_pred eeccccc-ccc-cCChhhh------hCCCCccEEEccCCcceeeCcc--cccCCCCCcEEeCCCCcccccccccccCCCC
Q 048828 63 IYLTVNR-FSG-SLPFDIL------VNLPNLKELGVGGNNFVGSIPD--SLSNASNLERLDLPGNQFKGKVSIDFSSLKN 132 (367)
Q Consensus 63 L~l~~~~-~~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 132 (367)
|++++|. +.+ .+|..+. ..+++|++|++++|.+. .+|. .+.++++|++|++++|.+. .+| .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 775 5665442 24569999999999988 7787 7889999999999999888 555 7888888
Q ss_pred CCeEEcCCCcccCcCCCCCccccccCCCCC-CcEEEcccCccccccChhhhhhc-ccceEEEecCCcccccCC-------
Q 048828 133 LWWLNLEQNNLGMGTANDLDFVTSLTNCSS-LKSLSLYDNQFGGELPHSIANLS-STMIQFSIGGNQISGTIP------- 203 (367)
Q Consensus 133 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~------- 203 (367)
|++|++++|.+.. ++..+..+++ |+.|++++|.+. .+|..+.... .+|+.|++++|.+.+..|
T Consensus 597 L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 597 LTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp ESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred ceEEECcCCcccc-------chHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 8888888888762 2234556666 777777777766 5554443322 125555555554443222
Q ss_pred ----------------------ccccCCCCCcEEEccCCccccccccc-cc-------CccCCcEEEccCccccccCCcc
Q 048828 204 ----------------------PGIRNLVNLVALTMDSNQLHGTIPDV-IG-------ELKNLQVLFLFRNFLQGSIPPS 253 (367)
Q Consensus 204 ----------------------~~l~~~~~L~~L~l~~n~~~~~~~~~-~~-------~~~~L~~L~l~~~~i~~~~~~~ 253 (367)
..+..+++|+.|++++|.++ ..|.. +. .+++|+.|++++|+++ .+|..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 22234555666666666555 32222 21 1125666666666665 44444
Q ss_pred cc--CCCCCCeEEccCCeeccccCcccccCCCCcEEEcCC------CcccCCcchhhhhhcccceeEeccCCeeeeccCc
Q 048828 254 LG--NLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASH------NKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 254 l~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~------n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+..++.+ ++|++++|.+ +.+|.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L-~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL-IQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC-CEEECCSSCC-CBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC-CEEECCCCCC-CccCH
Confidence 44 56666666666666664 455555666666666644 55555666666666555 6666666666 36666
Q ss_pred ccc
Q 048828 326 QMF 328 (367)
Q Consensus 326 ~~~ 328 (367)
.++
T Consensus 824 ~l~ 826 (876)
T 4ecn_A 824 KLT 826 (876)
T ss_dssp CCC
T ss_pred hhc
Confidence 554
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=275.18 Aligned_cols=317 Identities=21% Similarity=0.163 Sum_probs=272.0
Q ss_pred CchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCC
Q 048828 3 PDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNL 82 (367)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 82 (367)
|+.|+++++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|.++++|++|++++|.+. .++...+..+
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l 127 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDL 127 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTC
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHcccc
Confidence 567999999999999999999888899999999999999999999777778899999999999999998 5555667899
Q ss_pred CCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCC
Q 048828 83 PNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSS 162 (367)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (367)
++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++.+|.+..... ..+..+++
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~------~~~~~l~~ 201 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD------YSFKRLYR 201 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT------TCSCSCTT
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh------hhcccCcc
Confidence 999999999999998888899999999999999999998777789999999999999998875543 46778899
Q ss_pred CcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEcc
Q 048828 163 LKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLF 242 (367)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 242 (367)
|+.|++++|...+.++....... +|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECC
T ss_pred cceeeCCCCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECC
Confidence 99999999987767777666555 59999999999996665788999999999999999997777888999999999999
Q ss_pred CccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeec
Q 048828 243 RNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGS 322 (367)
Q Consensus 243 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~ 322 (367)
+|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+..+ -.... ..+++.++...|.
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~-~~~~~-~~~~~~~~~~~C~ 358 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW-VFRRR-WRLNFNRQQPTCA 358 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-HHTTT-TSSCCTTCCCBEE
T ss_pred CCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-HHhhh-hccccCccCceeC
Confidence 999998888999999999999999999997777778899999999999999985433221 11222 3455666666666
Q ss_pred cCccccC
Q 048828 323 LPLQMFT 329 (367)
Q Consensus 323 ~p~~~~~ 329 (367)
.|..+..
T Consensus 359 ~p~~~~g 365 (477)
T 2id5_A 359 TPEFVQG 365 (477)
T ss_dssp ESGGGTT
T ss_pred CchHHcC
Confidence 6765443
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=280.54 Aligned_cols=119 Identities=24% Similarity=0.239 Sum_probs=73.4
Q ss_pred hhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCC
Q 048828 5 FIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPN 84 (367)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 84 (367)
.|+++++|++|++++|.+.+..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+. .++...+..+++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~ 125 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKT 125 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCcccccccc
Confidence 4566666666666666666555555666666666666666666555556666666666666666665 444433456666
Q ss_pred ccEEEccCCccee-eCcccccCCCCCcEEeCCCCccccccc
Q 048828 85 LKELGVGGNNFVG-SIPDSLSNASNLERLDLPGNQFKGKVS 124 (367)
Q Consensus 85 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~ 124 (367)
|++|++++|.+.. .+|..+.++++|++|++++|.+....+
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 6666666666653 245666666677777776666554433
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.6e-35 Score=265.99 Aligned_cols=299 Identities=21% Similarity=0.252 Sum_probs=181.2
Q ss_pred hccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
|+++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 143 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCC
Confidence 344555555555555554444444555555555555555555444444555555555555555554 4444444455555
Q ss_pred cEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcE
Q 048828 86 KELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKS 165 (367)
Q Consensus 86 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 165 (367)
++|++++|.+....+..+.++++|++|++++|.+... .+..+++|++|++++|.++ .+...+.|++
T Consensus 144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-----------~~~~~~~L~~ 209 (390)
T 3o6n_A 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-----------TLAIPIAVEE 209 (390)
T ss_dssp CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-----------EEECCSSCSE
T ss_pred cEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-----------ccCCCCcceE
Confidence 5555555555443344455555555555555554432 2334455555555554432 1223356777
Q ss_pred EEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcc
Q 048828 166 LSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNF 245 (367)
Q Consensus 166 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 245 (367)
|++++|.+.. ++.. ...+++.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 210 L~l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 210 LDASHNSINV-VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283 (390)
T ss_dssp EECCSSCCCE-EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred EECCCCeeee-cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence 7777776652 2222 123578888888877643 467778888888888888876667777788888888888888
Q ss_pred ccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCc
Q 048828 246 LQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 246 i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
+++ .+..+..+++|+.|++++|.+. .++..+..+++|+.|++++|++++ ++ +..++.+ ++|++++|+++++...
T Consensus 284 l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L-~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 284 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL-KNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC-SEEECCSSCEEHHHHH
T ss_pred Ccc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccC-CEEEcCCCCccchhHH
Confidence 874 4445566788888888888877 455667777888888888888873 33 3455555 8888888888776666
Q ss_pred cccCCC
Q 048828 326 QMFTGR 331 (367)
Q Consensus 326 ~~~~~~ 331 (367)
.++...
T Consensus 358 ~~~~~~ 363 (390)
T 3o6n_A 358 ALFRNV 363 (390)
T ss_dssp HHTTTC
T ss_pred HHHHHH
Confidence 555543
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=281.15 Aligned_cols=326 Identities=19% Similarity=0.176 Sum_probs=217.3
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
||..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+. .++...+.+
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 98 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSG 98 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTT
T ss_pred cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcC
Confidence 555443 57888888888888777777888888888888888887666777888888888888888877 566566678
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCccccc-ccccccCCCCCCeEEcCCCcccCcCCCCCc--------
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGK-VSIDFSSLKNLWWLNLEQNNLGMGTANDLD-------- 152 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------- 152 (367)
+++|++|++++|.+....+..+.++++|++|++++|.+... .|..+..+++|++|++++|.++......+.
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchh
Confidence 88888888888887744444678888888888888887763 467778888888888877765422110000
Q ss_pred --------------------------------------------------------------------------------
Q 048828 153 -------------------------------------------------------------------------------- 152 (367)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (367)
T Consensus 179 ~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence
Q ss_pred ---------------ccccc------------------------------------------------------------
Q 048828 153 ---------------FVTSL------------------------------------------------------------ 157 (367)
Q Consensus 153 ---------------~~~~~------------------------------------------------------------ 157 (367)
....+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSC
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccc
Confidence 00001
Q ss_pred -----CCCCCCcEEEcccCcccccc--ChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCccccccc-cc
Q 048828 158 -----TNCSSLKSLSLYDNQFGGEL--PHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIP-DV 229 (367)
Q Consensus 158 -----~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~ 229 (367)
..+++|++|++++|.+.+.. +..+..+. +++.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..
T Consensus 339 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccccccCCCCCEEeCcCCccCccccccccccccC-ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 22344444455444443221 23333333 488888888877754444 7777777777777777765443 35
Q ss_pred ccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeec-cccCcccccCCCCcEEEcCCCcccCCcchhhhhhccc
Q 048828 230 IGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ-GNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTL 308 (367)
Q Consensus 230 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~l 308 (367)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..|..+..++.+
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 666777777777777777666666677777777777777765 3456666677777777777777776556666666666
Q ss_pred ceeEeccCCeeeeccCccccCCCCC
Q 048828 309 SLYLDLSYNLLNGSLPLQMFTGRRP 333 (367)
Q Consensus 309 l~~L~l~~n~i~~~~p~~~~~~~~~ 333 (367)
++|++++|.+++..|..+.....+
T Consensus 497 -~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 497 -QVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp -CEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -CEEeCCCCcCCCCCHHHhhcccCC
Confidence 777777777764433344444443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=276.33 Aligned_cols=134 Identities=20% Similarity=0.178 Sum_probs=113.1
Q ss_pred CCCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 1 QLPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 1 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
+||..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+. .+|..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---
Confidence 3676666 89999999999999877788999999999999999998777889999999999999999998 77765
Q ss_pred CCCCccEEEccCCccee-eCcccccCCCCCcEEeCCCCcccccccccccCCCCC--CeEEcCCCcc
Q 048828 81 NLPNLKELGVGGNNFVG-SIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNL--WWLNLEQNNL 143 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L--~~L~l~~~~~ 143 (367)
.+++|++|++++|.+.. .+|..+.++++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 78999999999999875 357889999999999999998875 345566666 8888877766
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-34 Score=279.52 Aligned_cols=238 Identities=20% Similarity=0.207 Sum_probs=131.5
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
||..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+. .++...|.+
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~ 95 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAF 95 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhcc
Confidence 444443 56666666666666555555666666666666666666555666666666666666666665 555544556
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcC--------------
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGT-------------- 147 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------------- 147 (367)
+++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++...
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 666666666666665444455666666666666666665555555555666666666555543222
Q ss_pred ------------CCCCccccccC---------------------CCCCCcEEEcccCccccccChhhhhhc-ccceEEEe
Q 048828 148 ------------ANDLDFVTSLT---------------------NCSSLKSLSLYDNQFGGELPHSIANLS-STMIQFSI 193 (367)
Q Consensus 148 ------------~~~~~~~~~~~---------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~l~l 193 (367)
+..+.....+. ..++|+.|++++|.+.+..+..+..+. .+++.|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 11100000000 113445555555555444444443332 23777777
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEcc
Q 048828 194 GGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLF 242 (367)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 242 (367)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 7777666666667777777777777776665444444444444444443
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=274.75 Aligned_cols=311 Identities=18% Similarity=0.229 Sum_probs=202.0
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
||..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|.+|.++++|++|++++|.+. .+|.. .
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~ 119 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---P 119 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---C
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---c
Confidence 566554 78888999988888777778888888999999988888777888888888999999988887 77765 6
Q ss_pred CCCccEEEccCCcceee-CcccccCCCCCcEEeCCCCcccccccccccCCCCC--CeEEcCCCcc--cCcCCCCCcccc-
Q 048828 82 LPNLKELGVGGNNFVGS-IPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNL--WWLNLEQNNL--GMGTANDLDFVT- 155 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~~~- 155 (367)
+++|++|++++|.+... .|..+.++++|++|++++|.+... .+..+++| ++|++++|.+ +...+..+....
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 88899999988888742 356788888899998888887653 34444455 8888877766 322221111100
Q ss_pred -------------------ccCC-------------------------------------------------------CC
Q 048828 156 -------------------SLTN-------------------------------------------------------CS 161 (367)
Q Consensus 156 -------------------~~~~-------------------------------------------------------~~ 161 (367)
.+.. .+
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence 0001 12
Q ss_pred CCcEEEcccCccccccChhhh----------------------------------------------------hhcccce
Q 048828 162 SLKSLSLYDNQFGGELPHSIA----------------------------------------------------NLSSTMI 189 (367)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~----------------------------------------------------~~~~~L~ 189 (367)
+|++|++++|.+.+.+|..+. ....+++
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~ 356 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence 566666666665544443320 1223466
Q ss_pred EEEecCCcccccCCccccCCCCCcEEEccCCccccc--ccccccCccCCcEEEccCccccccCC-ccccCCCCCCeEEcc
Q 048828 190 QFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGT--IPDVIGELKNLQVLFLFRNFLQGSIP-PSLGNLTKLADLALS 266 (367)
Q Consensus 190 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~ 266 (367)
.|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++.+| ..+..+++|+.|+++
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~ 436 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence 666666666655666666666666666666666642 23445666666677776666665233 345556666666666
Q ss_pred CCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCcc
Q 048828 267 FNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQ 326 (367)
Q Consensus 267 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~ 326 (367)
+|.+++..+..+. ++|+.|++++|+++ .+|..+..++.+ ++|++++|.++ .+|..
T Consensus 437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L-~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 437 SNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL-QELNVASNQLK-SVPDG 491 (562)
T ss_dssp SSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC-SEEECCSSCCC-CCCTT
T ss_pred CCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC-CEEECCCCCCC-CCCHH
Confidence 6666543333322 56666677666666 566665555555 67777777766 56665
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.8e-34 Score=277.49 Aligned_cols=325 Identities=22% Similarity=0.207 Sum_probs=228.4
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
||+.+. +++++|+|++|.|.+..+.+|.++++|++|++++|.|+.+.+.+|.++++|++|++++|.+. .++...|.+
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~ 122 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSG 122 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTT
T ss_pred cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcC
Confidence 455443 46788888888887766677888888888888888887666777888888888888888877 677777778
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCccccc-ccccccCCCCCCeEEcCCCcccCcCCCCCc--------
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGK-VSIDFSSLKNLWWLNLEQNNLGMGTANDLD-------- 152 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------- 152 (367)
+++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|++++|+++......+.
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 88888888888887755555677888888888888877653 355567777777777777654321110000
Q ss_pred --------------------------------------------------------------------------------
Q 048828 153 -------------------------------------------------------------------------------- 152 (367)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (367)
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 048828 153 -------------------------------------------------------------------------------- 152 (367)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (367)
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence
Q ss_pred cccccCCCCCCcEEEcccCccccc--cChh-----------------------h------------------------hh
Q 048828 153 FVTSLTNCSSLKSLSLYDNQFGGE--LPHS-----------------------I------------------------AN 183 (367)
Q Consensus 153 ~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-----------------------~------------------------~~ 183 (367)
.......+++|+.+++++|.+... .+.. + ..
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccc
Confidence 000001123444444444433210 0000 0 00
Q ss_pred hcccceEEEecCCcccccCCccccCCCCCcEEEccCCccc-ccccccccCccCCcEEEccCccccccCCccccCCCCCCe
Q 048828 184 LSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLH-GTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLAD 262 (367)
Q Consensus 184 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 262 (367)
....++.++++.|.+....+..+..++.++.|++++|.+. ...+..+..+++|+.|++++|++++..|..|..+++|+.
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 1113455566666666566667777888888888888654 345677888899999999999999888888889999999
Q ss_pred EEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccC
Q 048828 263 LALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFT 329 (367)
Q Consensus 263 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~ 329 (367)
|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++.+++|++++|++.|++...++.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~ 589 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHH
Confidence 9999999988777888889999999999999998888888777543499999999999888765553
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-33 Score=274.50 Aligned_cols=223 Identities=22% Similarity=0.230 Sum_probs=160.2
Q ss_pred CcccccCCCCCcEEeCCCCccccccc-ccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccc--c
Q 048828 99 IPDSLSNASNLERLDLPGNQFKGKVS-IDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFG--G 175 (367)
Q Consensus 99 ~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~ 175 (367)
.+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+..... ..+..+++|+.|++.+|.+. +
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR------NSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT------TTTTTCTTCCEEECTTSCCBCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh------hhhhcCcccccchhccccccccc
Confidence 33444445555555555554443222 334455555555555554432222 24455677777777776654 2
Q ss_pred ccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCccccccc--------ccccCccCCcEEEccCcccc
Q 048828 176 ELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIP--------DVIGELKNLQVLFLFRNFLQ 247 (367)
Q Consensus 176 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L~l~~~~i~ 247 (367)
..|..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|+++
T Consensus 471 ~~p~~~~~l~~-L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 471 SSPSPFQPLRN-LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp CSSCTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred cCCcccccCCC-CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 45555555554 9999999999988778888999999999999998875422 23677899999999999999
Q ss_pred ccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhh-hhcccceeEeccCCeeeeccCc-
Q 048828 248 GSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLL-SITTLSLYLDLSYNLLNGSLPL- 325 (367)
Q Consensus 248 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~~~~ll~~L~l~~n~i~~~~p~- 325 (367)
...+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+. .++.+ ++|++++|++.|+++.
T Consensus 550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L-~~l~l~~N~~~c~c~~~ 628 (680)
T 1ziw_A 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL-TELDMRFNPFDCTCESI 628 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC-SEEECTTCCCCBCCCCC
T ss_pred CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc-CEEEccCCCcccCCccH
Confidence 66566789999999999999999977777788999999999999999976666666 56677 9999999999999885
Q ss_pred cccC
Q 048828 326 QMFT 329 (367)
Q Consensus 326 ~~~~ 329 (367)
.++.
T Consensus 629 ~~~~ 632 (680)
T 1ziw_A 629 AWFV 632 (680)
T ss_dssp SSEE
T ss_pred HHHH
Confidence 4443
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-34 Score=284.25 Aligned_cols=309 Identities=17% Similarity=0.206 Sum_probs=224.1
Q ss_pred CccccCCCCCCcEEEccCccccC-----------------Ccchhcc--CCCCcceeecccccccccCChhhhhCCCCcc
Q 048828 26 IPTTLGLLRNLVYLNVAENQFSG-----------------MFPRWIC--NISSLELIYLTVNRFSGSLPFDILVNLPNLK 86 (367)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~i~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (367)
+|..+.++++|++|++++|.+++ .+|..+. ++++|++|++++|.+.+.+|.. +..+++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCC
Confidence 66778889999999999999987 2777776 9999999999999988788854 47899999
Q ss_pred EEEccCCc-cee-eCccccc-------CCCCCcEEeCCCCcccccccc--cccCCCCCCeEEcCCCcccCcCCCCCcccc
Q 048828 87 ELGVGGNN-FVG-SIPDSLS-------NASNLERLDLPGNQFKGKVSI--DFSSLKNLWWLNLEQNNLGMGTANDLDFVT 155 (367)
Q Consensus 87 ~L~l~~~~-~~~-~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 155 (367)
+|++++|. ++. .+|..+. .+++|++|++++|.+. .+|. .+..+++|++|++++|.++. +.
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~-------lp- 589 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH-------LE- 589 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-------CC-
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-------ch-
Confidence 99999997 775 5665444 4559999999999998 6676 79999999999999998861 12
Q ss_pred ccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCC--CCcEEEccCCcccccccc-----
Q 048828 156 SLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLV--NLVALTMDSNQLHGTIPD----- 228 (367)
Q Consensus 156 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~----- 228 (367)
.+..+++|+.|++++|.+. .+|..+..+..+|+.|++++|.+. .+|..+...+ +|+.|++++|.+.+..|.
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 6778899999999999998 888877776655999999999988 5666665543 366666666666543221
Q ss_pred ------------------------cccCccCCcEEEccCccccccCCcccc-------CCCCCCeEEccCCeeccccCcc
Q 048828 229 ------------------------VIGELKNLQVLFLFRNFLQGSIPPSLG-------NLTKLADLALSFNNLQGNIPSS 277 (367)
Q Consensus 229 ------------------------~~~~~~~L~~L~l~~~~i~~~~~~~l~-------~~~~L~~L~l~~n~i~~~~~~~ 277 (367)
.+..+++|+.|++++|.++...+..+. ++++|+.|++++|.++ .+|..
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 122456666677776666632222222 1227777777777777 55666
Q ss_pred cc--cCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccC------CeeeeccCccccCCCCCCCCCcCCccchhhhcc
Q 048828 278 LG--NCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSY------NLLNGSLPLQMFTGRRPTDSAFTEGLTLHEFAT 349 (367)
Q Consensus 278 ~~--~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~------n~i~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (367)
+. .+++|+.|++++|++++ +|..+..++.+ +.|++++ |.+.+.+|..+.....+..+ ..+++.+..++.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L-~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL-KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL-QIGSNDIRKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC-CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE-ECCSSCCCBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC-CEEECCCCCCcccccccccChHHHhcCCCCCEE-ECCCCCCCccCH
Confidence 65 67777777777777775 67777777666 7777765 66666777777666555443 334444444443
Q ss_pred C
Q 048828 350 M 350 (367)
Q Consensus 350 ~ 350 (367)
.
T Consensus 824 ~ 824 (876)
T 4ecn_A 824 K 824 (876)
T ss_dssp C
T ss_pred h
Confidence 3
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-34 Score=273.73 Aligned_cols=299 Identities=20% Similarity=0.244 Sum_probs=212.9
Q ss_pred hccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
|+++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+. .+|..+|..+++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCC
Confidence 455666666666666666555556666666666666666666555566666666666666666665 5555555666666
Q ss_pred cEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcE
Q 048828 86 KELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKS 165 (367)
Q Consensus 86 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 165 (367)
++|++++|.+....|..+.++++|++|++++|.+.+. .+..+++|++|++++|.++ .+...++|+.
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~-----------~l~~~~~L~~ 215 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-----------TLAIPIAVEE 215 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS-----------EEECCTTCSE
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc-----------cccCCchhhe
Confidence 6666666666655555566666666666666666543 2445566666666666553 2234467888
Q ss_pred EEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcc
Q 048828 166 LSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNF 245 (367)
Q Consensus 166 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 245 (367)
|++++|.+.. ++.. .+.+++.|++++|.+.+ +..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 216 L~ls~n~l~~-~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 216 LDASHNSINV-VRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp EECCSSCCCE-EECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred eeccCCcccc-cccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 8888887763 3322 22458999999998874 4678889999999999999988888888899999999999999
Q ss_pred ccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCc
Q 048828 246 LQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 246 i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
+++ ++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++++. + +..++.+ ++|++++|++.|..+.
T Consensus 290 l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L-~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL-KNLTLSHNDWDCNSLR 363 (597)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC-SEEECCSSCEEHHHHH
T ss_pred CCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCC-CEEEeeCCCCCChhHH
Confidence 985 4556677899999999999998 5677788899999999999999843 3 4455666 9999999999887766
Q ss_pred cccCCC
Q 048828 326 QMFTGR 331 (367)
Q Consensus 326 ~~~~~~ 331 (367)
.++...
T Consensus 364 ~~~~~~ 369 (597)
T 3oja_B 364 ALFRNV 369 (597)
T ss_dssp HHTTTC
T ss_pred HHHHHH
Confidence 666544
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=280.71 Aligned_cols=286 Identities=20% Similarity=0.198 Sum_probs=147.3
Q ss_pred chhccCCCCcEEEccCcccCCCC-ccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCCh-hhhhC
Q 048828 4 DFIGNLSALGILLIRWNSLGGQI-PTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPF-DILVN 81 (367)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~ 81 (367)
..|+++++|++|++++|...+.+ +.+|.++++|++|++++|.+....|.+|.++++|++|++++|.+.+.++. .++..
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 33444444444444444222222 33444444555555555544444444444455555555555444432222 12344
Q ss_pred CCCccEEEccCCcceeeCc-ccccCCCCCcEEeCCCCcccccccccccCC--CCCCeEEcCCCcccCcCCCCCccccccC
Q 048828 82 LPNLKELGVGGNNFVGSIP-DSLSNASNLERLDLPGNQFKGKVSIDFSSL--KNLWWLNLEQNNLGMGTANDLDFVTSLT 158 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 158 (367)
+++|++|++++|.+....+ ..+.++++|++|++++|.+.+..+..+..+ ++|++|+++.|.+..... ..+.
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~------~~~~ 195 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS------VDWG 195 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC------CCCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc------cchh
Confidence 4455555555544443222 234445555555555444443333333322 333333333333322111 1112
Q ss_pred CCC------CCcEEEcccCccccccChhhhhh-------------------------------------cccceEEEecC
Q 048828 159 NCS------SLKSLSLYDNQFGGELPHSIANL-------------------------------------SSTMIQFSIGG 195 (367)
Q Consensus 159 ~~~------~L~~L~l~~~~~~~~~~~~~~~~-------------------------------------~~~L~~l~l~~ 195 (367)
.++ .|+.|++++|.+.+..+..+... ..+++.|++++
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 222 36677776665443333222211 13466677777
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccC
Q 048828 196 NQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIP 275 (367)
Q Consensus 196 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 275 (367)
|.+.+..+..+..+++|++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+....+
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 76666666666677777777777777765556666666777777777777665556666666777777777776665555
Q ss_pred cccccCCCCcEEEcCCCccc
Q 048828 276 SSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 276 ~~~~~~~~L~~L~l~~n~i~ 295 (367)
..+..+++|+.|++++|.++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSC
T ss_pred hhhcCCCCCCEEECCCCCCC
Confidence 55666666666666666654
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.8e-34 Score=269.93 Aligned_cols=167 Identities=20% Similarity=0.169 Sum_probs=91.1
Q ss_pred CcEEEcccCccccccChhhhhhcccceEEEecCCcccccCC---ccccCCCCCcEEEccCCccccccc--ccccCccCCc
Q 048828 163 LKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIP---PGIRNLVNLVALTMDSNQLHGTIP--DVIGELKNLQ 237 (367)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~ 237 (367)
|+.|++++|.+. .+|..+.....+++.|++++|.+.+..+ ..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 333444444333 3444443333347777777776665432 234566677777777776653321 3456667777
Q ss_pred EEEccCccccccCCccccCCCCCCeEEccCCeeccccCcc------------------cccCCCCcEEEcCCCcccCCcc
Q 048828 238 VLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSS------------------LGNCQNLISFRASHNKLTGALP 299 (367)
Q Consensus 238 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~------------------~~~~~~L~~L~l~~n~i~~~~~ 299 (367)
.|++++|+++ .+|..+..+++|+.|++++|.+.. ++.. ...+++|++|++++|+++ .+|
T Consensus 391 ~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip 467 (549)
T 2z81_A 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLP 467 (549)
T ss_dssp EEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCC
T ss_pred EEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCC
Confidence 7777777766 455555556666666666666542 1111 124566666666666666 455
Q ss_pred hhhhhhcccceeEeccCCeeeeccCccccCCCCCCC
Q 048828 300 YQLLSITTLSLYLDLSYNLLNGSLPLQMFTGRRPTD 335 (367)
Q Consensus 300 ~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~~~~~~~ 335 (367)
. ...++.+ ++|++++|.+++..|..+.....+..
T Consensus 468 ~-~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~ 501 (549)
T 2z81_A 468 D-ASLFPVL-LVMKISRNQLKSVPDGIFDRLTSLQK 501 (549)
T ss_dssp C-GGGCTTC-CEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred C-cccCccC-CEEecCCCccCCcCHHHHhcCcccCE
Confidence 4 2344444 66777777666444444444444433
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=284.19 Aligned_cols=267 Identities=19% Similarity=0.171 Sum_probs=165.4
Q ss_pred CchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchh--ccCCCCcceeecccccccccCChhhhh
Q 048828 3 PDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRW--ICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
|..|+++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+...+.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 678999999999999999999888999999999999999999998755554 899999999999999998554545678
Q ss_pred CCCCccEEEccCCcceeeCcccccCC--CCCcEEeCCCCcccccccccccCCCC------CCeEEcCCCcccCcCCCCCc
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNA--SNLERLDLPGNQFKGKVSIDFSSLKN------LWWLNLEQNNLGMGTANDLD 152 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~~~ 152 (367)
.+++|++|++++|.+....+..+..+ ++|+.|++++|.+.+..+..+..+++ |++|++++|.+.......+.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 99999999999999887667766665 67777777777776655555544443 67777776654322111000
Q ss_pred c------------------------------ccccCC--CCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccc
Q 048828 153 F------------------------------VTSLTN--CSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISG 200 (367)
Q Consensus 153 ~------------------------------~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 200 (367)
. ...+.. +++|+.|++++|.+.+..+..+..+.. ++.|++++|.+.+
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINK 304 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCC-CCEEEEESCCCCE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCC-CCEEECCCCcCCC
Confidence 0 000000 134455555554444333333333222 4444444444444
Q ss_pred cCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCee
Q 048828 201 TIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNL 270 (367)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i 270 (367)
..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 4444444444444444444444433344444444444444444444433333344444444444444433
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-33 Score=255.17 Aligned_cols=292 Identities=20% Similarity=0.187 Sum_probs=251.4
Q ss_pred cCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccE
Q 048828 8 NLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKE 87 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (367)
.++++++++++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 3689999999999998766666788999999999999998777789999999999999999998 677677789999999
Q ss_pred EEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEE
Q 048828 88 LGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLS 167 (367)
Q Consensus 88 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 167 (367)
|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++++|.++.. .+..+++|+.++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~l~~L~~L~ 192 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHAN 192 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---------CGGGCTTCSEEE
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---------ccccccccceee
Confidence 99999999854444578999999999999999988888899999999999999988643 245678999999
Q ss_pred cccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcccc
Q 048828 168 LYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQ 247 (367)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~ 247 (367)
+++|.+.+. ..+..++.+++++|.+...... ..++|++|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 193 l~~n~l~~~------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 193 VSYNLLSTL------AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp CCSSCCSEE------ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ccccccccc------CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 999987732 1233599999999998855332 357999999999999854 46788999999999999999
Q ss_pred ccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccC
Q 048828 248 GSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 248 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p 324 (367)
+..+..+..+++|+.|++++|.+++ .+..+..+++|+.|++++|+++ .+|..+..++.+ ++|++++|+|+ .+|
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~L~~N~i~-~~~ 334 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSIV-TLK 334 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCCC-CCC
T ss_pred CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcC-CEEECCCCccc-eeC
Confidence 8888899999999999999999985 5556678999999999999998 788888888888 99999999998 555
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=246.07 Aligned_cols=296 Identities=26% Similarity=0.353 Sum_probs=237.1
Q ss_pred hccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
+..+++|++|+++++.+... + .+..+++|++|++++|.++...+ +..+++|++|++++|.+. .++ .+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTC
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCcC
Confidence 45788999999999988743 3 47889999999999999885444 889999999999999887 554 36789999
Q ss_pred cEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcE
Q 048828 86 KELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKS 165 (367)
Q Consensus 86 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 165 (367)
++|++++|.+.. ++. +..+++|++|++++|......+ .+..+++|++|++++|.+.... .+..+++|++
T Consensus 113 ~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~--------~~~~l~~L~~ 181 (347)
T 4fmz_A 113 RELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT--------PIANLTDLYS 181 (347)
T ss_dssp SEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG--------GGGGCTTCSE
T ss_pred CEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch--------hhccCCCCCE
Confidence 999999999874 444 8889999999999996554433 4889999999999999875332 2677899999
Q ss_pred EEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcc
Q 048828 166 LSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNF 245 (367)
Q Consensus 166 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 245 (367)
|++++|.+.+ ++. +..+ .+++.+++++|.+....+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 182 L~l~~n~l~~-~~~-~~~l-~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 182 LSLNYNQIED-ISP-LASL-TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EECTTSCCCC-CGG-GGGC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEccCCcccc-ccc-ccCC-CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 9999998873 333 4444 459999999998875444 7888999999999999885444 7788999999999999
Q ss_pred ccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCc
Q 048828 246 LQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 246 i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|++++..|..+..++.+ ++|++++|++++..|
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL-TTLFLSQNHITDIRP- 328 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC-SEEECCSSSCCCCGG-
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC-CEEEccCCccccccC-
Confidence 8853 4577889999999999988853 467889999999999999988888888888888 999999999985545
Q ss_pred cccCCCCC
Q 048828 326 QMFTGRRP 333 (367)
Q Consensus 326 ~~~~~~~~ 333 (367)
+.....+
T Consensus 329 -~~~l~~L 335 (347)
T 4fmz_A 329 -LASLSKM 335 (347)
T ss_dssp -GGGCTTC
T ss_pred -hhhhhcc
Confidence 4444433
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=262.81 Aligned_cols=126 Identities=25% Similarity=0.361 Sum_probs=110.9
Q ss_pred cEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccC
Q 048828 13 GILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (367)
+++++++|.+. .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+. .++...+..+++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCC
Confidence 57999999998 4666555 89999999999999888889999999999999999998 56555668999999999999
Q ss_pred CcceeeCcccccCCCCCcEEeCCCCccccc-ccccccCCCCCCeEEcCCCcccC
Q 048828 93 NNFVGSIPDSLSNASNLERLDLPGNQFKGK-VSIDFSSLKNLWWLNLEQNNLGM 145 (367)
Q Consensus 93 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~~~~~~ 145 (367)
|.++ .+|.. .+++|++|++++|.+.+. .|..++.+++|++|++++|.+..
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 9998 56665 899999999999999874 57889999999999999998864
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-32 Score=253.96 Aligned_cols=287 Identities=30% Similarity=0.384 Sum_probs=161.7
Q ss_pred hhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCC
Q 048828 5 FIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPN 84 (367)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 84 (367)
.++.+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|++|++++|.+. .++. +..+++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~ 135 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP--LKNLTN 135 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-CChH--HcCCCC
Confidence 36778888888888888775433 7778888888888887775444 777788888888887776 4443 467777
Q ss_pred ccEEEccCCcceeeC-------------------cccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccC
Q 048828 85 LKELGVGGNNFVGSI-------------------PDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGM 145 (367)
Q Consensus 85 L~~L~l~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 145 (367)
|++|++++|.+.... ...+.++++|++|++++|.+... ..+..+++|++|++++|.+..
T Consensus 136 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence 777777777655211 01255677788888888877643 236677777777777776643
Q ss_pred cCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCccccc
Q 048828 146 GTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGT 225 (367)
Q Consensus 146 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 225 (367)
.. .+..+++|++|++++|.+.+ + ..+..++ +++.|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 214 ~~--------~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 214 IT--------PLGILTNLDELSLNGNQLKD-I-GTLASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp CG--------GGGGCTTCCEEECCSSCCCC-C-GGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred cc--------cccccCCCCEEECCCCCccc-c-hhhhcCC-CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc
Confidence 22 13344555555555555442 1 1222222 25555555555443222 44444555555555544432
Q ss_pred cc--------------------ccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCc
Q 048828 226 IP--------------------DVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLI 285 (367)
Q Consensus 226 ~~--------------------~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 285 (367)
.+ ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 356 (466)
T 1o6v_A 281 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 356 (466)
T ss_dssp GGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred ccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence 22 003344455555555555443322 34445555555555555432 2444555555
Q ss_pred EEEcCCCcccCCcchhhhhhcccceeEeccCCeee
Q 048828 286 SFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLN 320 (367)
Q Consensus 286 ~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 320 (367)
.|++++|++++..| +..++.+ ++|++++|+++
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~~~ 388 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRI-TQLGLNDQAWT 388 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTC-CEEECCCEEEE
T ss_pred EEeCCCCccCccch--hhcCCCC-CEEeccCCccc
Confidence 55555555554443 3444444 55555555555
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.4e-32 Score=243.02 Aligned_cols=286 Identities=26% Similarity=0.384 Sum_probs=238.4
Q ss_pred hhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCC
Q 048828 5 FIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPN 84 (367)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 84 (367)
.++.+++|++|++++|.+.+..+ +..+++|++|++++|.+.. + ..+..+++|++|++++|.+. .++. +..+++
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~--~~~l~~ 133 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-DISP--LANLTK 133 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG--GTTCTT
T ss_pred hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-Cchh--hccCCc
Confidence 48889999999999999985433 8899999999999999884 3 35889999999999999997 5554 678999
Q ss_pred ccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCc
Q 048828 85 LKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLK 164 (367)
Q Consensus 85 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 164 (367)
|++|++++|..... +..+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 134 L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~ 202 (347)
T 4fmz_A 134 MYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI--------SPLASLTSLH 202 (347)
T ss_dssp CCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC--------GGGGGCTTCC
T ss_pred eeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc--------ccccCCCccc
Confidence 99999999966533 4448999999999999999875544 88999999999999987532 2367889999
Q ss_pred EEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCc
Q 048828 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRN 244 (367)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 244 (367)
.+++++|.+.+..+ +..+ .+++.|++++|.+....+ +..+++|++|++++|.+++. ..+..+++|+.|++++|
T Consensus 203 ~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 203 YFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp EEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred eeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC
Confidence 99999998874333 4444 459999999999885544 88999999999999999853 45788999999999999
Q ss_pred cccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeee
Q 048828 245 FLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLN 320 (367)
Q Consensus 245 ~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 320 (367)
.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..| +..++.+ ++|++++|+|+
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-~~L~l~~N~i~ 346 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM-DSADFANQVIK 346 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC-SEESSSCC---
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc-ceeehhhhccc
Confidence 99854 457788999999999999998888889999999999999999996655 6677777 99999999986
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=261.41 Aligned_cols=321 Identities=22% Similarity=0.221 Sum_probs=249.6
Q ss_pred CCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEE
Q 048828 9 LSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKEL 88 (367)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 88 (367)
+...++++++++.+.+ +|..+. ++|++|++++|.+....+..|.++++|++|++++|.+. .++...|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEE
Confidence 4556899999999985 565554 79999999999999888889999999999999999998 6666667899999999
Q ss_pred EccCCcceeeCcccccCCCCCcEEeCCCCccccc-ccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCC--cE
Q 048828 89 GVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGK-VSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSL--KS 165 (367)
Q Consensus 89 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L--~~ 165 (367)
++++|.++ .+|.. .+++|++|++++|.+... .+..+..+++|++|++++|.+... .+..+++| ++
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~ 173 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---------DLLPVAHLHLSC 173 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---------TTGGGTTSCEEE
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---------chhhhhhceeeE
Confidence 99999998 56665 899999999999999874 357899999999999999988642 22334444 99
Q ss_pred EEcccCcc--ccccChhhhhhc----------------------------------------------------------
Q 048828 166 LSLYDNQF--GGELPHSIANLS---------------------------------------------------------- 185 (367)
Q Consensus 166 L~l~~~~~--~~~~~~~~~~~~---------------------------------------------------------- 185 (367)
|++++|.+ .+..+..+..+.
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99988877 333333222210
Q ss_pred ----------------------ccceEEEecCCcccccCCccc-------------------------------------
Q 048828 186 ----------------------STMIQFSIGGNQISGTIPPGI------------------------------------- 206 (367)
Q Consensus 186 ----------------------~~L~~l~l~~~~~~~~~~~~l------------------------------------- 206 (367)
.+++.|++++|.+.+..|..+
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 147777777777765454433
Q ss_pred ----------------cCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccC--CccccCCCCCCeEEccCC
Q 048828 207 ----------------RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI--PPSLGNLTKLADLALSFN 268 (367)
Q Consensus 207 ----------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~l~~~~~L~~L~l~~n 268 (367)
..+++|++|++++|.+++..+..+..+++|+.|++++|++++.. |..+..+++|+.|++++|
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 56788999999999998777888888999999999999998532 456788899999999999
Q ss_pred eeccccC-cccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccCCCCCCCCCcCCccchhhh
Q 048828 269 NLQGNIP-SSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFTGRRPTDSAFTEGLTLHEF 347 (367)
Q Consensus 269 ~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 347 (367)
.+++.++ ..+..+++|++|++++|++++.+|..+. +.+ ++|++++|.|+ .+|..++....+ +....+++.+..+
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L-~~L~L~~N~l~-~ip~~~~~l~~L-~~L~L~~N~l~~l 488 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV-KVLDLHNNRIM-SIPKDVTHLQAL-QELNVASNQLKSV 488 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC-SEEECCSSCCC-CCCTTTTSSCCC-SEEECCSSCCCCC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC-CEEECCCCcCc-ccChhhcCCCCC-CEEECCCCCCCCC
Confidence 9987344 4577889999999999999877776553 345 99999999998 899988855544 4445566666655
Q ss_pred ccC
Q 048828 348 ATM 350 (367)
Q Consensus 348 ~~~ 350 (367)
+..
T Consensus 489 ~~~ 491 (562)
T 3a79_B 489 PDG 491 (562)
T ss_dssp CTT
T ss_pred CHH
Confidence 443
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.9e-33 Score=264.47 Aligned_cols=318 Identities=20% Similarity=0.236 Sum_probs=208.0
Q ss_pred CchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCC
Q 048828 3 PDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNL 82 (367)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 82 (367)
|..|+++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+......+..+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 45566777777777777777666666667777777777777777666666667777777777777766521112234566
Q ss_pred CCccEEEccCCc-ceeeCcccccCCCCCcEEeCCCCccccccccccc------------------------CCCCCCeEE
Q 048828 83 PNLKELGVGGNN-FVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFS------------------------SLKNLWWLN 137 (367)
Q Consensus 83 ~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~------------------------~~~~L~~L~ 137 (367)
++|++|++++|. +....+..+.++++|++|++++|.+.+..+..+. .+++|++|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 666666666665 3322234566666666666666666544443332 245666666
Q ss_pred cCCCcccCcCCCC----------------------------------------------------------------Cc-
Q 048828 138 LEQNNLGMGTAND----------------------------------------------------------------LD- 152 (367)
Q Consensus 138 l~~~~~~~~~~~~----------------------------------------------------------------~~- 152 (367)
+++|.+....... +.
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 6666554321000 00
Q ss_pred ------------------------------------------ccccc-CCCCCCcEEEcccCccccccChh---hhhhcc
Q 048828 153 ------------------------------------------FVTSL-TNCSSLKSLSLYDNQFGGELPHS---IANLSS 186 (367)
Q Consensus 153 ------------------------------------------~~~~~-~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~ 186 (367)
....+ ..+++|++|++++|.+.+..+.. +..+ +
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW-P 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS-T
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc-c
Confidence 00011 24788999999999887554332 2223 3
Q ss_pred cceEEEecCCcccccCC--ccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCc------------
Q 048828 187 TMIQFSIGGNQISGTIP--PGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPP------------ 252 (367)
Q Consensus 187 ~L~~l~l~~~~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~------------ 252 (367)
+++.|++++|.+.+..+ ..+..+++|++|++++|.++ ..|..+..+++|+.|++++|++++....
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSN 440 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCS
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCC
Confidence 48888888887765432 44677778888888888777 5566666666777777777766522111
Q ss_pred -----cccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCc
Q 048828 253 -----SLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 253 -----~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
....+++|+.|++++|.++ .+|. ...+++|+.|++++|++++..|..+..++.+ ++|++++|+++|.+|.
T Consensus 441 N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 441 NNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCPR 515 (549)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTC-CEEECCSSCBCCCHHH
T ss_pred CChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCccc-CEEEecCCCccCCCcc
Confidence 1236789999999999998 4554 4678999999999999998888888888888 9999999999999883
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-32 Score=262.52 Aligned_cols=292 Identities=20% Similarity=0.186 Sum_probs=253.5
Q ss_pred cCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccE
Q 048828 8 NLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKE 87 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (367)
.+++++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 3578999999999998777777888999999999999999888889999999999999999998 677777789999999
Q ss_pred EEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEE
Q 048828 88 LGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLS 167 (367)
Q Consensus 88 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 167 (367)
|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.++.. .+..+++|+.|+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~~l~~L~~L~ 198 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------DLSLIPSLFHAN 198 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------CGGGCTTCSEEE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------Chhhhhhhhhhh
Confidence 99999999855555579999999999999999988888899999999999999988643 245678999999
Q ss_pred cccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcccc
Q 048828 168 LYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQ 247 (367)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~ 247 (367)
+++|.+.+. ..+..++.|++++|.+....+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 199 l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 199 VSYNLLSTL------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp CCSSCCSEE------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cccCccccc------cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccC
Confidence 999988732 12335999999999988554433 36899999999999853 56788999999999999999
Q ss_pred ccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccC
Q 048828 248 GSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 248 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p 324 (367)
+..|..+..+++|+.|++++|.+++ ++..+..+++|+.|++++|.++ .+|..+..++.+ ++|++++|.++ .+|
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L-~~L~L~~N~l~-~~~ 340 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSIV-TLK 340 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCCC-CCC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC-CEEECCCCCCC-CcC
Confidence 8889999999999999999999995 5666677999999999999999 788888888888 99999999998 455
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=7.6e-32 Score=239.74 Aligned_cols=291 Identities=16% Similarity=0.227 Sum_probs=213.6
Q ss_pred CCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEc
Q 048828 11 ALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90 (367)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 90 (367)
+++.++++++.+. .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+. .+....+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEEC
Confidence 6788888888776 3444443 57888888888888766767888888888888888887 554445578888888888
Q ss_pred cCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEccc
Q 048828 91 GGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYD 170 (367)
Q Consensus 91 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (367)
++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+...+. ....+..+++|++|++++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI----ENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB----CTTGGGGCTTCCEEECCS
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc----ChhhccCCCCcCEEECCC
Confidence 888877 4555443 688888888888887777778888888888888887753221 124566778888888888
Q ss_pred CccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccC
Q 048828 171 NQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI 250 (367)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 250 (367)
|.+. .++..+. .+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+
T Consensus 181 n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 181 TNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred Cccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 8877 4554433 45888888888888777778888888888888888887666667777888888888888887 56
Q ss_pred CccccCCCCCCeEEccCCeeccccCccccc------CCCCcEEEcCCCcccC--CcchhhhhhcccceeEeccCCe
Q 048828 251 PPSLGNLTKLADLALSFNNLQGNIPSSLGN------CQNLISFRASHNKLTG--ALPYQLLSITTLSLYLDLSYNL 318 (367)
Q Consensus 251 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~~n~i~~--~~~~~~~~~~~ll~~L~l~~n~ 318 (367)
|..+..+++|+.|++++|.+++..+..+.. .+.++.+++++|++.. ..|..+..+..+ +.+++++|+
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l-~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR-AAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG-GGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce-eEEEecccC
Confidence 666777888888888888887655555533 3677788888887752 345556566666 778887763
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.2e-32 Score=242.33 Aligned_cols=289 Identities=19% Similarity=0.226 Sum_probs=168.7
Q ss_pred CCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEc
Q 048828 11 ALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90 (367)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 90 (367)
+++.++++++.+. .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+. .++...+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEEC
Confidence 5666777666665 3444332 46677777777666555556666777777777777666 443344466677777777
Q ss_pred cCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEccc
Q 048828 91 GGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYD 170 (367)
Q Consensus 91 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (367)
++|.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.++..+. ....+..+ +|+.|++++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF----EPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS----CTTSSCSC-CCSCCBCCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC----CcccccCC-ccCEEECcC
Confidence 776665 3444333 567777777776665555556666777777777666542111 11223333 666666666
Q ss_pred CccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccC
Q 048828 171 NQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI 250 (367)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 250 (367)
|.+. .+|..+. .+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+
T Consensus 182 n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 182 AKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 6665 3443322 34666666666666555566666666666666666666555555666666666666666666 44
Q ss_pred CccccCCCCCCeEEccCCeeccccCccccc------CCCCcEEEcCCCccc--CCcchhhhhhcccceeEeccCC
Q 048828 251 PPSLGNLTKLADLALSFNNLQGNIPSSLGN------CQNLISFRASHNKLT--GALPYQLLSITTLSLYLDLSYN 317 (367)
Q Consensus 251 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~------~~~L~~L~l~~n~i~--~~~~~~~~~~~~ll~~L~l~~n 317 (367)
|..+..+++|+.|++++|.+++..+..+.. .++|+.+++++|++. +..|.++..++.+ +.+++++|
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L-~~l~l~~n 330 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR-LAIQFGNY 330 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS-TTEEC---
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh-hhhhcccc
Confidence 555566666666666666666544444433 245666666666654 3444555555555 66666655
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-31 Score=247.50 Aligned_cols=288 Identities=26% Similarity=0.373 Sum_probs=214.6
Q ss_pred cCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccE
Q 048828 8 NLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKE 87 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (367)
.+++++.|++.++.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+. .++. +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence 46799999999999874 44 47889999999999999986544 899999999999999998 5554 689999999
Q ss_pred EEccCCcceeeCcccccCCCCCcEEeCCCCccccccc-------------------ccccCCCCCCeEEcCCCcccCcCC
Q 048828 88 LGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVS-------------------IDFSSLKNLWWLNLEQNNLGMGTA 148 (367)
Q Consensus 88 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-------------------~~l~~~~~L~~L~l~~~~~~~~~~ 148 (367)
|++++|.+... +. +.++++|++|++++|.+..... ..+..+++|++|++++|.+...
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 192 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-- 192 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--
Confidence 99999998843 43 8999999999999998764321 1256778999999999987532
Q ss_pred CCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccc
Q 048828 149 NDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPD 228 (367)
Q Consensus 149 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 228 (367)
..+..+++|++|++++|.+.+..+ +.. ..+++.|++++|.+.+. ..+..+++|++|++++|.+++..+
T Consensus 193 ------~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 193 ------SVLAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp ------GGGGGCTTCSEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred ------hhhccCCCCCEEEecCCccccccc--ccc-cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence 346788999999999999885443 333 44599999999998853 457889999999999999986544
Q ss_pred cccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcc---------
Q 048828 229 VIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP--------- 299 (367)
Q Consensus 229 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--------- 299 (367)
+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..|
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 335 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 335 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCE
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCE
Confidence 6778889999998888875433 5566666666666666654322 4445555555555555543332
Q ss_pred -----------hhhhhhcccceeEeccCCeeeeccC
Q 048828 300 -----------YQLLSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 300 -----------~~~~~~~~ll~~L~l~~n~i~~~~p 324 (367)
..+..++.+ ++|++++|++++..|
T Consensus 336 L~l~~n~l~~~~~l~~l~~L-~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 336 LFFYNNKVSDVSSLANLTNI-NWLSAGHNQISDLTP 370 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTC-CEEECCSSCCCBCGG
T ss_pred eECCCCccCCchhhccCCCC-CEEeCCCCccCccch
Confidence 233444444 666666666654444
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.8e-31 Score=235.24 Aligned_cols=275 Identities=21% Similarity=0.256 Sum_probs=233.5
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+....|..|..+++|++|++++|.+. .++..++
T Consensus 46 lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-- 120 (330)
T 1xku_A 46 VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-- 120 (330)
T ss_dssp CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--
T ss_pred cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--
Confidence 455444 68999999999999877778999999999999999999888999999999999999999998 7777653
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccc--cccccccCCCCCCeEEcCCCcccCcCCCCCccccccCC
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKG--KVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTN 159 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 159 (367)
++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.... .+
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-------~~-- 190 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-------GL-- 190 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-------SC--
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-------cc--
Confidence 899999999999987767779999999999999999864 566778999999999999999874332 11
Q ss_pred CCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEE
Q 048828 160 CSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVL 239 (367)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 239 (367)
.++|++|++++|.+.+..+..+..+.. |+.|++++|.+.+..+..+..+++|++|++++|.++ ..|..+..+++|+.|
T Consensus 191 ~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 191 PPSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268 (330)
T ss_dssp CTTCSEEECTTSCCCEECTGGGTTCTT-CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCC-CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEE
Confidence 279999999999998666677766655 999999999999888888999999999999999998 777788899999999
Q ss_pred EccCccccccCCccccC------CCCCCeEEccCCeecc--ccCcccccCCCCcEEEcCCCc
Q 048828 240 FLFRNFLQGSIPPSLGN------LTKLADLALSFNNLQG--NIPSSLGNCQNLISFRASHNK 293 (367)
Q Consensus 240 ~l~~~~i~~~~~~~l~~------~~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~ 293 (367)
++++|++++..+..+.. .+.++.+++++|++.. ..+..+..+++++.+++++|+
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999776666643 4789999999998863 455778889999999999985
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=5.9e-32 Score=238.30 Aligned_cols=256 Identities=27% Similarity=0.401 Sum_probs=169.7
Q ss_pred CCCcEEEccCccccC--CcchhccCCCCcceeeccc-ccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCc
Q 048828 34 RNLVYLNVAENQFSG--MFPRWICNISSLELIYLTV-NRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLE 110 (367)
Q Consensus 34 ~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 110 (367)
.++++|+++++.+.+ .+|..+..+++|++|++++ |.+.+.+|..+ ..+++|++|++++|.+....|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 456666666666665 5566666666666666663 55554555443 4666666666666666655666666666666
Q ss_pred EEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceE
Q 048828 111 RLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQ 190 (367)
Q Consensus 111 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 190 (367)
+|++++|.+.+..+..+..+++|++|++++|. +.+.+|..+..+...++.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~------------------------------l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR------------------------------ISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC------------------------------CEEECCGGGGCCCTTCCE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc------------------------------ccCcCCHHHhhhhhcCcE
Confidence 66666666655555555555555555555554 443444444444433555
Q ss_pred EEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCee
Q 048828 191 FSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNL 270 (367)
Q Consensus 191 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i 270 (367)
|++++|.+.+..|..+..++ |++|++++|.+++..+..+..+++|+.|++++|.+++..+. +..+++|+.|++++|.+
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 55555555555566666665 78888888877767777777788888888888887754444 66778888888888888
Q ss_pred ccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccC
Q 048828 271 QGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p 324 (367)
++..|..+..+++|+.|++++|++++.+|.. ..++.+ +++++++|+..+..|
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L-~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF-DVSAYANNKCLCGSP 308 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGS-CGGGTCSSSEEESTT
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-cccccc-ChHHhcCCCCccCCC
Confidence 8777888888888888888888888777776 566667 888888887444444
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.7e-31 Score=235.45 Aligned_cols=274 Identities=20% Similarity=0.265 Sum_probs=232.4
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++...+.+|..+++|++|++++|.+. .+|..++
T Consensus 48 ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-- 122 (332)
T 2ft3_A 48 VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-- 122 (332)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--
T ss_pred cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--
Confidence 555553 78999999999999877888999999999999999999888999999999999999999998 7887653
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccc--cccccccCCCCCCeEEcCCCcccCcCCCCCccccccCC
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKG--KVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTN 159 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 159 (367)
++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..+..+ +|++|++++|.++.... .+
T Consensus 123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-------~~-- 191 (332)
T 2ft3_A 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-------DL-- 191 (332)
T ss_dssp -TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-------SS--
T ss_pred -ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-------cc--
Confidence 899999999999986666679999999999999999864 556667777 99999999999875432 11
Q ss_pred CCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEE
Q 048828 160 CSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVL 239 (367)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 239 (367)
.++|++|++++|.+.+..+..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.++ ..|..+..+++|+.|
T Consensus 192 ~~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 192 PETLNELHLDHNKIQAIELEDLLRYSK-LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269 (332)
T ss_dssp CSSCSCCBCCSSCCCCCCTTSSTTCTT-CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEE
T ss_pred cCCCCEEECCCCcCCccCHHHhcCCCC-CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEE
Confidence 268999999999998665566666655 999999999999888888999999999999999999 777778899999999
Q ss_pred EccCccccccCCccccC------CCCCCeEEccCCeec--cccCcccccCCCCcEEEcCCCc
Q 048828 240 FLFRNFLQGSIPPSLGN------LTKLADLALSFNNLQ--GNIPSSLGNCQNLISFRASHNK 293 (367)
Q Consensus 240 ~l~~~~i~~~~~~~l~~------~~~L~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~ 293 (367)
++++|.+++..+..+.. .+.|+.+++++|++. +..+..+..+++|+.+++++|+
T Consensus 270 ~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999999776666643 477999999999887 5667788889999999999885
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.7e-31 Score=235.31 Aligned_cols=249 Identities=28% Similarity=0.409 Sum_probs=200.4
Q ss_pred CCCcEEEccCcccCC--CCccccCCCCCCcEEEccC-ccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCcc
Q 048828 10 SALGILLIRWNSLGG--QIPTTLGLLRNLVYLNVAE-NQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLK 86 (367)
Q Consensus 10 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (367)
.++++|+++++.+.+ .++..+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCC
Confidence 589999999999998 8899999999999999995 8888889999999999999999999998667755 47899999
Q ss_pred EEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCC-CCCeEEcCCCcccCcCCCCCccccccCCCCCCcE
Q 048828 87 ELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLK-NLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKS 165 (367)
Q Consensus 87 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 165 (367)
+|++++|.+...+|..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~--------------------- 187 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--------------------- 187 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---------------------
Confidence 999999999988899999999999999999999877787777766 6777777666554
Q ss_pred EEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcc
Q 048828 166 LSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNF 245 (367)
Q Consensus 166 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 245 (367)
+..|..+.... ++.|++++|.+.+..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.
T Consensus 188 ---------~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 188 ---------GKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp ---------EECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred ---------ccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 23333333321 55555555555555666677778888888888888755544 6667888888888888
Q ss_pred ccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCc
Q 048828 246 LQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNK 293 (367)
Q Consensus 246 i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 293 (367)
+++..|..+..+++|+.|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 88777888888888888888888888766665 677888888888886
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5e-29 Score=240.74 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=126.0
Q ss_pred EccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcc
Q 048828 16 LIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNF 95 (367)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 95 (367)
+-++..+. .+|..+. +++++|++++|.|+.+.+.+|.++++|++|++++|.+. .++...|.++++|++|+|++|.+
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcC
Confidence 33333444 4555443 47999999999999777889999999999999999998 88888889999999999999999
Q ss_pred eeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCcccc
Q 048828 96 VGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGG 175 (367)
Q Consensus 96 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 175 (367)
+...+..|.++++|++|++++|.+.+..+..|+.+++|++|++++|.+.... ....+..+++|++|++++|.+.+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC-----CchhhccchhhhhhcccCccccc
Confidence 9766778999999999999999999887778999999999999999886433 22456677888889888887653
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2.5e-29 Score=232.41 Aligned_cols=281 Identities=19% Similarity=0.170 Sum_probs=185.1
Q ss_pred chhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCC
Q 048828 4 DFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLP 83 (367)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (367)
..++++++|++|++++|.+.+. + .+..+++|++|++++|.+++. + +..+++|++|++++|.+. .++ +..++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---VTPLT 106 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---CTTCT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---cCCCC
Confidence 3467788899999999888864 4 578888999999999988754 3 778888999999998887 444 46788
Q ss_pred CccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCC
Q 048828 84 NLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSL 163 (367)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 163 (367)
+|++|++++|.++. ++ +..+++|++|++++|.+.+. .+..+++|++|++++|..... ..+..+++|
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~--------~~~~~l~~L 172 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITK--------LDVTPQTQL 172 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCC--------CCCTTCTTC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccc--------cccccCCcC
Confidence 89999999888874 33 78888888888888888764 367778888888887742211 134556777
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccC
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 243 (367)
+.|++++|.+.+ ++ +..+. +++.+++++|.+.+. .+..+++|++|++++|.+++ .| +..+++|+.|++++
T Consensus 173 ~~L~ls~n~l~~-l~--l~~l~-~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--VSQNK-LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CEEECCSSCCCC-CC--CTTCT-TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CEEECCCCccce-ec--cccCC-CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 777777777663 33 33333 377777777766643 25666777777777777664 33 55666677777777
Q ss_pred ccccccCCccc-----------------------------cCCCCCCeEEccCCeeccccCc--------ccccCCCCcE
Q 048828 244 NFLQGSIPPSL-----------------------------GNLTKLADLALSFNNLQGNIPS--------SLGNCQNLIS 286 (367)
Q Consensus 244 ~~i~~~~~~~l-----------------------------~~~~~L~~L~l~~n~i~~~~~~--------~~~~~~~L~~ 286 (367)
|++++..+..+ +.+++|+.|++++|...+.++. .+..+++|++
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 66664433222 2234455555555543222221 1344566666
Q ss_pred EEcCCCcccCCcchhhhhhcccceeEeccCCeeee
Q 048828 287 FRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNG 321 (367)
Q Consensus 287 L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~ 321 (367)
|++++|++++ ++ +..++.+ ++|++++|.+++
T Consensus 323 L~L~~N~l~~-l~--l~~l~~L-~~L~l~~N~l~~ 353 (457)
T 3bz5_A 323 LYLNNTELTE-LD--VSHNTKL-KSLSCVNAHIQD 353 (457)
T ss_dssp EECTTCCCSC-CC--CTTCTTC-SEEECCSSCCCB
T ss_pred EECCCCcccc-cc--cccCCcC-cEEECCCCCCCC
Confidence 6666666664 22 4455555 666776666653
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5e-29 Score=219.21 Aligned_cols=279 Identities=19% Similarity=0.217 Sum_probs=166.1
Q ss_pred cEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccC---ChhhhhCCCCccEEE
Q 048828 13 GILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSL---PFDILVNLPNLKELG 89 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~ 89 (367)
+.++.+++.+. .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.+. .+ +..+ ..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSD-FGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHH-HSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCccccc-ccccccCEEE
Confidence 34555555554 2333222 45666666666665444444555666666666666554 22 2222 3455666666
Q ss_pred ccCCcceeeCcccccCCCCCcEEeCCCCccccccc-ccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEc
Q 048828 90 VGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVS-IDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSL 168 (367)
Q Consensus 90 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 168 (367)
+++|.+. .++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------------------------- 137 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-------------------------- 137 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC--------------------------
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc--------------------------
Confidence 6665555 344445555555555555555543332 234444555555554444
Q ss_pred ccCccccccChhhhhhcccceEEEecCCcccc-cCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcccc
Q 048828 169 YDNQFGGELPHSIANLSSTMIQFSIGGNQISG-TIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQ 247 (367)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~ 247 (367)
+.+..+..+..+. +++.|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 138 ----l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 138 ----TRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp ----CEECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred ----CCccchhhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 4322222222222 25555555554443 35666777888888888888888666777788888888888888888
Q ss_pred ccCCccccCCCCCCeEEccCCeeccccCcccccCC-CCcEEEcCCCcccCCcch-hhhh-hcccceeEeccCCeeeeccC
Q 048828 248 GSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQ-NLISFRASHNKLTGALPY-QLLS-ITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 248 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~-~~~~-~~~ll~~L~l~~n~i~~~~p 324 (367)
+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++++.... .+.. +... +.+.+..+.+.|..|
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~-~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ-RQLLVEVERMECATP 291 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHT-GGGBSCGGGCBEEES
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhh-hhhhccccccccCCc
Confidence 66666777788888888888888877777777774 888888888888754321 1112 1222 455566677777777
Q ss_pred ccccC
Q 048828 325 LQMFT 329 (367)
Q Consensus 325 ~~~~~ 329 (367)
..+..
T Consensus 292 ~~~~g 296 (306)
T 2z66_A 292 SDKQG 296 (306)
T ss_dssp GGGTT
T ss_pred hhhCC
Confidence 76654
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.3e-28 Score=227.70 Aligned_cols=291 Identities=18% Similarity=0.185 Sum_probs=193.3
Q ss_pred CCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC
Q 048828 2 LPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN 81 (367)
Q Consensus 2 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 81 (367)
+| .++.+++|++|++++|.+.+. + +..+++|++|++++|.+++. + +..+++|++|++++|.+. .++ +..
T Consensus 57 ~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~-~l~---~~~ 125 (457)
T 3bz5_A 57 MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT-KLD---VSQ 125 (457)
T ss_dssp CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS-CCC---CTT
T ss_pred Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC-eec---CCC
Confidence 44 688899999999999998864 3 78889999999999998854 3 788899999999999887 454 467
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCC
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCS 161 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (367)
+++|++|++++|.++. ++ +..+++|++|++++|...+.. .+..+++|++|++++|.++... +..++
T Consensus 126 l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---------l~~l~ 191 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---------VSQNK 191 (457)
T ss_dssp CTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---------CTTCT
T ss_pred CCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---------cccCC
Confidence 8899999999988874 32 667777777777777433222 3566667777777766664321 33344
Q ss_pred CCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCccccccccc------------
Q 048828 162 SLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDV------------ 229 (367)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~------------ 229 (367)
+|+.|++++|.+.+. + +..++ +++.|++++|++.+ .| +..+++|+.|++++|.+++..+..
T Consensus 192 ~L~~L~l~~N~l~~~-~--l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 192 LLNRLNCDTNNITKL-D--LNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT 264 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred CCCEEECcCCcCCee-c--cccCC-CCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence 444555544444421 1 22222 24444444444443 22 334444444444444443221111
Q ss_pred -----------------ccCccCCcEEEccCccccccCCc--------cccCCCCCCeEEccCCeeccccCcccccCCCC
Q 048828 230 -----------------IGELKNLQVLFLFRNFLQGSIPP--------SLGNLTKLADLALSFNNLQGNIPSSLGNCQNL 284 (367)
Q Consensus 230 -----------------~~~~~~L~~L~l~~~~i~~~~~~--------~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L 284 (367)
+..+++|+.|++++|...+.+|. .+..+++|+.|++++|.+++. .+..+++|
T Consensus 265 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L 341 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKL 341 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTC
T ss_pred CCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcC
Confidence 23457788888888765433221 356779999999999999963 38889999
Q ss_pred cEEEcCCCcccCCcchhhhh-------------hcccceeEeccCCeeeeccCccccCC
Q 048828 285 ISFRASHNKLTGALPYQLLS-------------ITTLSLYLDLSYNLLNGSLPLQMFTG 330 (367)
Q Consensus 285 ~~L~l~~n~i~~~~~~~~~~-------------~~~ll~~L~l~~n~i~~~~p~~~~~~ 330 (367)
+.|++++|++++ ++ .+.. ...+ ..+++++|.++|.+|..++..
T Consensus 342 ~~L~l~~N~l~~-l~-~L~~L~l~~n~l~g~~~~~~l-~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 342 KSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITM-PKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp SEEECCSSCCCB-CT-TGGGSSGGGTSEEEEEEEEEC-CCBCCBTTBEEEECCTTCBCT
T ss_pred cEEECCCCCCCC-cc-ccccccccCCcEEecceeeec-CccccccCcEEEEcChhHhcc
Confidence 999999999985 22 1111 1234 788999999999999987764
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.7e-32 Score=253.78 Aligned_cols=284 Identities=19% Similarity=0.176 Sum_probs=135.8
Q ss_pred CCcEEEccCccccC----CcchhccCCCCcceeecccccccccCChhh----hhCCCCccEEEccCCcceee----Cccc
Q 048828 35 NLVYLNVAENQFSG----MFPRWICNISSLELIYLTVNRFSGSLPFDI----LVNLPNLKELGVGGNNFVGS----IPDS 102 (367)
Q Consensus 35 ~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~ 102 (367)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ ....++|++|++++|.++.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 35555555554442 224444455555555555554432111111 11233455555555544421 1233
Q ss_pred ccCCCCCcEEeCCCCccccccccccc-----CCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCcccccc
Q 048828 103 LSNASNLERLDLPGNQFKGKVSIDFS-----SLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGEL 177 (367)
Q Consensus 103 l~~l~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 177 (367)
+..+++|++|++++|.+....+..+. ..++|++|++++|.++..+.. .+...+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--DLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--HHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH--HHHHHHHhCCCccEEeccCCcCChHH
Confidence 34445555555555554433222221 234555555555554322110 11223344556666666666554322
Q ss_pred Chhhh----hhcccceEEEecCCccccc----CCccccCCCCCcEEEccCCcccccccccccC-----ccCCcEEEccCc
Q 048828 178 PHSIA----NLSSTMIQFSIGGNQISGT----IPPGIRNLVNLVALTMDSNQLHGTIPDVIGE-----LKNLQVLFLFRN 244 (367)
Q Consensus 178 ~~~~~----~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~~ 244 (367)
...+. ....+++.|++++|.++.. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 21111 1123466666666655532 3444455666666666666655433322221 246666666666
Q ss_pred ccccc----CCccccCCCCCCeEEccCCeeccccCccccc-----CCCCcEEEcCCCcccC----Ccchhhhhhccccee
Q 048828 245 FLQGS----IPPSLGNLTKLADLALSFNNLQGNIPSSLGN-----CQNLISFRASHNKLTG----ALPYQLLSITTLSLY 311 (367)
Q Consensus 245 ~i~~~----~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~-----~~~L~~L~l~~n~i~~----~~~~~~~~~~~ll~~ 311 (367)
.+++. .+..+..+++|+.|++++|.+++..+..+.. +++|+.|++++|.+++ .+|..+..++.+ ++
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~~ 402 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL-RE 402 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC-CE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc-cE
Confidence 66543 2333444566666666666665433333322 4566666666666654 455555555555 66
Q ss_pred EeccCCeeee
Q 048828 312 LDLSYNLLNG 321 (367)
Q Consensus 312 L~l~~n~i~~ 321 (367)
|++++|+|++
T Consensus 403 L~l~~N~i~~ 412 (461)
T 1z7x_W 403 LDLSNNCLGD 412 (461)
T ss_dssp EECCSSSCCH
T ss_pred EECCCCCCCH
Confidence 6666666653
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.5e-29 Score=217.72 Aligned_cols=252 Identities=22% Similarity=0.251 Sum_probs=179.7
Q ss_pred cEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceee--CcccccCCCCCcEEeC
Q 048828 37 VYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGS--IPDSLSNASNLERLDL 114 (367)
Q Consensus 37 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l 114 (367)
+.++++++.++ .+|..+ .++|++|++++|.+. .++..++..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 34555555554 333322 245566666666555 55555555555666666655555421 1333444555555555
Q ss_pred CCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccC-hhhhhhcccceEEEe
Q 048828 115 PGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELP-HSIANLSSTMIQFSI 193 (367)
Q Consensus 115 ~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~l~l 193 (367)
++|.+.. .+..+. .+++|++|++++|.+.+..+ ..+..+. +|+.|++
T Consensus 86 s~n~i~~-l~~~~~------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l 133 (306)
T 2z66_A 86 SFNGVIT-MSSNFL------------------------------GLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDI 133 (306)
T ss_dssp CSCSEEE-EEEEEE------------------------------TCTTCCEEECTTSEEESSTTTTTTTTCT-TCCEEEC
T ss_pred CCCcccc-ChhhcC------------------------------CCCCCCEEECCCCcccccccchhhhhcc-CCCEEEC
Confidence 5555442 222344 44555555555555542222 2233333 4899999
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCcccc-cccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeecc
Q 048828 194 GGNQISGTIPPGIRNLVNLVALTMDSNQLHG-TIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQG 272 (367)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~ 272 (367)
++|.+....+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 9999988888889999999999999999986 467888999999999999999998888889999999999999999997
Q ss_pred ccCcccccCCCCcEEEcCCCcccCCcchhhhhhc-ccceeEeccCCeeeeccCc
Q 048828 273 NIPSSLGNCQNLISFRASHNKLTGALPYQLLSIT-TLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 273 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~ll~~L~l~~n~i~~~~p~ 325 (367)
..+..+..+++|+.|++++|++++..|..+..++ .+ ++|++++|+++++++.
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L-~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC-CEEECTTCCEECSGGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC-CEEEccCCCeecccCh
Confidence 7777888999999999999999988898888886 55 9999999999987764
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.9e-29 Score=223.68 Aligned_cols=282 Identities=18% Similarity=0.176 Sum_probs=221.1
Q ss_pred CCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCc
Q 048828 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLE 110 (367)
Q Consensus 31 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 110 (367)
..|+.....+++++.++ .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+....+..+.++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 34566667888888887 4555443 58999999999887 67766678899999999999998877777889999999
Q ss_pred EEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCc-cccccChhhhhhcccce
Q 048828 111 RLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQ-FGGELPHSIANLSSTMI 189 (367)
Q Consensus 111 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~ 189 (367)
+|++++|.+....+..+..+++|++|++++|.++.... ...+..+++|++|++++|. +....+..+..+. +++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~ 177 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-----TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-FLE 177 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS-----SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc-----hhhhccCCCCcEEECCCCccccccCHHHccCCC-CCC
Confidence 99999999887666668889999999999998764322 1356778899999999984 5533445555554 499
Q ss_pred EEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccc---cCCCCCCeEEcc
Q 048828 190 QFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSL---GNLTKLADLALS 266 (367)
Q Consensus 190 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l---~~~~~L~~L~l~ 266 (367)
.|++++|.+.+..+..+..+++|++|++++|.++......+..+++|+.|++++|.+++..+..+ .....++.++++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 99999999988888899999999999999999874444445567899999999999986544433 345778888998
Q ss_pred CCeecc----ccCcccccCCCCcEEEcCCCcccCCcchhh-hhhcccceeEeccCCeeeeccC
Q 048828 267 FNNLQG----NIPSSLGNCQNLISFRASHNKLTGALPYQL-LSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 267 ~n~i~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~~~ll~~L~l~~n~i~~~~p 324 (367)
++.+.+ .++..+..+++|++|++++|+++ .+|..+ ..++.+ ++|++++|+++|++|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L-~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL-QKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC-CEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC-CEEEeeCCCccCcCC
Confidence 888765 35567788999999999999998 677764 667777 999999999998877
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=223.69 Aligned_cols=252 Identities=21% Similarity=0.202 Sum_probs=129.2
Q ss_pred CcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCC
Q 048828 36 LVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLP 115 (367)
Q Consensus 36 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 115 (367)
...++.++..++ .+|..+. ++++.|++++|.+. .++...|..+++|++|++++|.+....+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 455666665555 3443332 45666666666665 4444445566666666666666665555556666666666666
Q ss_pred CCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecC
Q 048828 116 GNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGG 195 (367)
Q Consensus 116 ~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 195 (367)
+|.+....+..+..+++|++|++++|.+..... ..+..+++|++|++++|.....++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~l~~~~~l~~i~----------------- 177 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS------YAFNRIPSLRRLDLGELKRLSYIS----------------- 177 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT------TTTTTCTTCCEEECCCCTTCCEEC-----------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCH------HHhhhCcccCEeCCCCCCCcceeC-----------------
Confidence 666665555556666666666666665543322 234455566666665533222222
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccC
Q 048828 196 NQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIP 275 (367)
Q Consensus 196 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 275 (367)
+..+..+++|++|++++|.++ ..+ .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 178 -------~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 178 -------EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp -------TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred -------cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 233444444555555555444 222 13344455555555555544444444445555555555555544444
Q ss_pred cccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccC
Q 048828 276 SSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 276 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p 324 (367)
..+..+++|+.|+|++|++++..+..+..++.+ ++|++++|++.|++.
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL-ERIHLHHNPWNCNCD 296 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC-CEEECCSSCEECSST
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCC-CEEEcCCCCccCCCC
Confidence 444445555555555555543333333334344 555555555544443
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.9e-32 Score=254.90 Aligned_cols=337 Identities=17% Similarity=0.155 Sum_probs=194.5
Q ss_pred hccCCCCcEEEccCcccCCC----CccccCCCCCCcEEEccCccccCCcchh-ccCCC----Ccceeeccccccccc---
Q 048828 6 IGNLSALGILLIRWNSLGGQ----IPTTLGLLRNLVYLNVAENQFSGMFPRW-ICNIS----SLELIYLTVNRFSGS--- 73 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~-~~~l~----~L~~L~l~~~~~~~~--- 73 (367)
+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+....+.. +..++ +|++|++++|.+.+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 55566677777776666532 2344555666777777766665332222 22333 567777776666521
Q ss_pred CChhhhhCCCCccEEEccCCcceeeCccc-----ccCCCCCcEEeCCCCcccccc----cccccCCCCCCeEEcCCCccc
Q 048828 74 LPFDILVNLPNLKELGVGGNNFVGSIPDS-----LSNASNLERLDLPGNQFKGKV----SIDFSSLKNLWWLNLEQNNLG 144 (367)
Q Consensus 74 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~l~~~~~~ 144 (367)
.....+..+++|++|++++|.+....+.. ....++|++|++++|.+.... +..+..+++|++|++++|.++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 11233456667777777766654322221 122456777777776665432 333455667777777776654
Q ss_pred CcCCCCCccccccC-CCCCCcEEEcccCccccc----cChhhhhhcccceEEEecCCcccccC-----CccccCCCCCcE
Q 048828 145 MGTANDLDFVTSLT-NCSSLKSLSLYDNQFGGE----LPHSIANLSSTMIQFSIGGNQISGTI-----PPGIRNLVNLVA 214 (367)
Q Consensus 145 ~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~-----~~~l~~~~~L~~ 214 (367)
..... .+...+. ..++|++|++++|.+... ++..+.... ++++|++++|.+.... +..+..+++|++
T Consensus 184 ~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 184 EAGVR--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp HHHHH--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred hHHHH--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 32221 0111111 244677777777766643 233333333 4777777777665432 122235677777
Q ss_pred EEccCCccccc----ccccccCccCCcEEEccCccccccCCcccc-----CCCCCCeEEccCCeeccc----cCcccccC
Q 048828 215 LTMDSNQLHGT----IPDVIGELKNLQVLFLFRNFLQGSIPPSLG-----NLTKLADLALSFNNLQGN----IPSSLGNC 281 (367)
Q Consensus 215 L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-----~~~~L~~L~l~~n~i~~~----~~~~~~~~ 281 (367)
|++++|.+++. .+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++. ++..+..+
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 77777777643 344555677788888888877643332221 235788888888877754 34456667
Q ss_pred CCCcEEEcCCCcccCCcchhhhh-----hcccceeEeccCCeeee----ccCccccCCCCCCCCCcCCccchhhh
Q 048828 282 QNLISFRASHNKLTGALPYQLLS-----ITTLSLYLDLSYNLLNG----SLPLQMFTGRRPTDSAFTEGLTLHEF 347 (367)
Q Consensus 282 ~~L~~L~l~~n~i~~~~~~~~~~-----~~~ll~~L~l~~n~i~~----~~p~~~~~~~~~~~~~~~~~~~l~~~ 347 (367)
++|++|++++|.+++..+..+.. .+.+ ++|++++|.+++ .+|..+...+.+..+ ..+++.+...
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L-~l~~N~i~~~ 413 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVL-RVLWLADCDVSDSSCSSLAATLLANHSLREL-DLSNNCLGDA 413 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCCHHHHHHHHHHHHHCCCCCEE-ECCSSSCCHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCce-EEEECCCCCCChhhHHHHHHHHHhCCCccEE-ECCCCCCCHH
Confidence 88888888888887655555544 3355 888888888875 667766665555444 3444455444
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.3e-29 Score=221.85 Aligned_cols=281 Identities=16% Similarity=0.148 Sum_probs=214.7
Q ss_pred cCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccE
Q 048828 8 NLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKE 87 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (367)
.|+.....+.+++.+. .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.+. .++...+..+++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCE
Confidence 4566667788888777 4555443 47899999999988666668888999999999999887 555555678899999
Q ss_pred EEccCCcceeeCcccccCCCCCcEEeCCCCccccccc-ccccCCCCCCeEEcCCCc-ccCcCCCCCccccccCCCCCCcE
Q 048828 88 LGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVS-IDFSSLKNLWWLNLEQNN-LGMGTANDLDFVTSLTNCSSLKS 165 (367)
Q Consensus 88 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~ 165 (367)
|++++|.++...+..+.++++|++|++++|.+..... ..+..+++|++|++++|. +..... ..+..+++|++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~------~~~~~l~~L~~ 178 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR------KDFAGLTFLEE 178 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------TTTTTCCEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH------HHccCCCCCCE
Confidence 9999998885444458888999999999998885544 468888999999998884 443222 45677888999
Q ss_pred EEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccc---cCccCCcEEEcc
Q 048828 166 LSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVI---GELKNLQVLFLF 242 (367)
Q Consensus 166 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~ 242 (367)
|++++|.+.+..+..+..+.. ++.|++++|.+.......+..+++|++|++++|.+++..+..+ .....++.+++.
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQN-VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSE-EEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EECCCCCcCccCHHHHhcccc-CCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 999999888666777766654 9999999988875444445568899999999998886544332 235678888888
Q ss_pred Cccccc----cCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcc
Q 048828 243 RNFLQG----SIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP 299 (367)
Q Consensus 243 ~~~i~~----~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 299 (367)
++.+.+ .+|..+..+++|+.|++++|.++......+..+++|++|++++|++.+..|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 887764 355667889999999999999995444446889999999999999997655
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-27 Score=220.90 Aligned_cols=248 Identities=20% Similarity=0.210 Sum_probs=158.8
Q ss_pred CcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCC
Q 048828 36 LVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLP 115 (367)
Q Consensus 36 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 115 (367)
...++.++..++ .+|..+. +++++|++++|.+. .++...|..+++|++|++++|.+....+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456777766666 3444332 56777777777776 4544555677777777777777776666677777777777777
Q ss_pred CCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecC
Q 048828 116 GNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGG 195 (367)
Q Consensus 116 ~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 195 (367)
+|.+....+..+..+++|++|++++|.+..... ..+..+++|+.|++++|...+.++........+|+.|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCH------hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 777776666667777777777777777654332 34556677777777764433344433222233466666666
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccC
Q 048828 196 NQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIP 275 (367)
Q Consensus 196 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 275 (367)
|.+.+. + .+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+
T Consensus 206 n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 206 CNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp SCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred Cccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 666633 2 35566666666666666665556666666666666666666665556666666666666666666665555
Q ss_pred cccccCCCCcEEEcCCCccc
Q 048828 276 SSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 276 ~~~~~~~~L~~L~l~~n~i~ 295 (367)
..+..+++|+.|++++|++.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEE
T ss_pred HHhccccCCCEEEccCCCcC
Confidence 55566666666666666654
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.4e-27 Score=207.69 Aligned_cols=256 Identities=21% Similarity=0.218 Sum_probs=161.6
Q ss_pred cEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCC
Q 048828 37 VYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPG 116 (367)
Q Consensus 37 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 116 (367)
++++++++.++ .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+....+..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45555555554 233322 245555566555555 44444445555555555555555544455555555555555555
Q ss_pred Cc-ccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecC
Q 048828 117 NQ-FKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGG 195 (367)
Q Consensus 117 n~-l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 195 (367)
|. +....+..+..+++|++|++++|. +.+..+..+..+. +|+.|++++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~------------------------------l~~~~~~~~~~l~-~L~~L~l~~ 138 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCG------------------------------LQELGPGLFRGLA-ALQYLYLQD 138 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSC------------------------------CCCCCTTTTTTCT-TCCEEECCS
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCc------------------------------CCEECHhHhhCCc-CCCEEECCC
Confidence 54 444334444555555555555544 4422232233222 255555555
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccC
Q 048828 196 NQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIP 275 (367)
Q Consensus 196 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 275 (367)
|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 55554555667788889999999988886666668888899999999999887778888888999999999998887666
Q ss_pred cccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccC
Q 048828 276 SSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFT 329 (367)
Q Consensus 276 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~ 329 (367)
..+..+++|+.|++++|++....+... -...+ +.+..+.+.+.|..|..+..
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~~~-~~~~l-~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRARP-LWAWL-QKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGGHH-HHHHH-HHCCSEECCCBEEESGGGTT
T ss_pred HHcccCcccCEEeccCCCccCCCCcHH-HHHHH-HhcccccCccccCCchHhCC
Confidence 678888999999999998875444321 11223 56667778888888876543
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=5.2e-28 Score=223.46 Aligned_cols=236 Identities=24% Similarity=0.282 Sum_probs=103.3
Q ss_pred CcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEc
Q 048828 59 SLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNL 138 (367)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 138 (367)
+|++|++++|.+. .+| . +..+++|++|++++|.++. +|.. .++|++|++++|.+.+ .+ .+..+++|++|++
T Consensus 132 ~L~~L~L~~n~l~-~lp-~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLE-KLP-E-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCC-CCc-c-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 4444444444444 233 1 3445555555555555442 3322 1345555555555543 22 4566666666666
Q ss_pred CCCcccCcCCC------------CCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccc
Q 048828 139 EQNNLGMGTAN------------DLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI 206 (367)
Q Consensus 139 ~~~~~~~~~~~------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l 206 (367)
++|.++..... .+.....+..+++|++|++++|.+. .++.. +.+++.|++++|.+.+ .|..
T Consensus 203 ~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~- 275 (454)
T 1jl5_A 203 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL- 275 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC-
T ss_pred CCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-cCcc-
Confidence 66665432110 0000112334444444444444443 22221 1234444444444442 2211
Q ss_pred cCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcE
Q 048828 207 RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLIS 286 (367)
Q Consensus 207 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 286 (367)
.++|++|++++|.+++. +.. .++|+.|++++|.+++. +. ..++|+.|++++|.+.+ ++.. +++|+.
T Consensus 276 --~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~ 341 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLER 341 (454)
T ss_dssp --CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred --cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCE
Confidence 24455555555554421 100 12334444444433321 10 01355566666665553 2222 355666
Q ss_pred EEcCCCcccCCcchhhhhhcccceeEeccCCeeee--ccCccccC
Q 048828 287 FRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNG--SLPLQMFT 329 (367)
Q Consensus 287 L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~--~~p~~~~~ 329 (367)
|++++|+++ .+|. .+..+ ++|++++|++++ .+|.++..
T Consensus 342 L~L~~N~l~-~lp~---~l~~L-~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 342 LIASFNHLA-EVPE---LPQNL-KQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp EECCSSCCS-CCCC---CCTTC-CEEECCSSCCSSCCCCCTTCCE
T ss_pred EECCCCccc-cccc---hhhhc-cEEECCCCCCCcCCCChHHHHh
Confidence 666666655 3444 12333 666666666654 45554443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.2e-27 Score=218.84 Aligned_cols=247 Identities=21% Similarity=0.236 Sum_probs=185.6
Q ss_pred CcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEcc
Q 048828 12 LGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVG 91 (367)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (367)
...++.++..+. .+|..+. +++++|++++|.+....+..|.++++|++|++++|.+. .++...|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECC
Confidence 456666666665 3444443 57888888888887777777888888888888888887 5555666778888888888
Q ss_pred CCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCc-ccCcCCCCCccccccCCCCCCcEEEccc
Q 048828 92 GNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNN-LGMGTANDLDFVTSLTNCSSLKSLSLYD 170 (367)
Q Consensus 92 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (367)
+|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +..... ..+..+++|+.|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE------GAFEGLFNLKYLNLGM 205 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT------TTTTTCTTCCEEECTT
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh------hhccCCCCCCEEECCC
Confidence 888875555667788888888888888876666677888888888888743 322221 3456778888888888
Q ss_pred CccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccC
Q 048828 171 NQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI 250 (367)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 250 (367)
|.+. .++. +..+. +|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 206 n~l~-~~~~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 206 CNIK-DMPN-LTPLV-GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp SCCS-SCCC-CTTCT-TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred Cccc-cccc-ccccc-cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 8877 3442 33333 4888888888888777888888888888888888888777777888888888888888888777
Q ss_pred CccccCCCCCCeEEccCCeec
Q 048828 251 PPSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 251 ~~~l~~~~~L~~L~l~~n~i~ 271 (367)
+..+..+++|+.|++++|++.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 777788888888888888765
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=217.72 Aligned_cols=247 Identities=21% Similarity=0.269 Sum_probs=188.7
Q ss_pred CcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEcc
Q 048828 12 LGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVG 91 (367)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (367)
.+.++..+..+. .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+. .++...|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECC
Confidence 456666666666 4555443 57888888888887777778888888888888888887 6666667788888888888
Q ss_pred CCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCc-ccCcCCCCCccccccCCCCCCcEEEccc
Q 048828 92 GNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNN-LGMGTANDLDFVTSLTNCSSLKSLSLYD 170 (367)
Q Consensus 92 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (367)
+|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +..... ..+..+++|++|++++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE------GAFEGLSNLRYLNLAM 194 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT------TTTTTCSSCCEEECTT
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc------chhhcccccCeecCCC
Confidence 888875555567888888888888888877766678888888888888743 322211 3466778888888888
Q ss_pred CccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccC
Q 048828 171 NQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI 250 (367)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 250 (367)
|.+. .++. +..+. +|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..
T Consensus 195 n~l~-~~~~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 195 CNLR-EIPN-LTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp SCCS-SCCC-CTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CcCc-cccc-cCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 8877 4443 33333 4888888888888777888888888999999988888777778888888999999998888777
Q ss_pred CccccCCCCCCeEEccCCeec
Q 048828 251 PPSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 251 ~~~l~~~~~L~~L~l~~n~i~ 271 (367)
+..+..+++|+.|++++|++.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 777788888899998888775
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.5e-27 Score=207.62 Aligned_cols=256 Identities=20% Similarity=0.226 Sum_probs=188.2
Q ss_pred cEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccC
Q 048828 13 GILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (367)
++++.+++.+.. +|..+ .++|++|++++|.+....+..|..+++|++|++++|.+. .+....+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCC
Confidence 678888888773 45433 468999999999999777788999999999999999998 56555668999999999999
Q ss_pred Cc-ceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccC
Q 048828 93 NN-FVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDN 171 (367)
Q Consensus 93 ~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (367)
|. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.... ..+..+++|++|++++|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD------DTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSS
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH------hHhccCCCccEEECCCC
Confidence 97 776667889999999999999999998778788889999999999888764332 23555667777777666
Q ss_pred ccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCC
Q 048828 172 QFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIP 251 (367)
Q Consensus 172 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 251 (367)
.+. ...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 164 ~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 164 RIS-------------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred ccc-------------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 554 2333445666777777777777776666777777777777777777776555
Q ss_pred ccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhh
Q 048828 252 PSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLS 304 (367)
Q Consensus 252 ~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 304 (367)
..+..+++|+.|++++|.+....+. ......++.+..+.+.+....|..+.+
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred HHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence 5677777788888887777632211 011122334445556666666665544
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.7e-28 Score=212.17 Aligned_cols=264 Identities=18% Similarity=0.114 Sum_probs=157.0
Q ss_pred EEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCc
Q 048828 39 LNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQ 118 (367)
Q Consensus 39 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 118 (367)
.+++.+.+.......+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+ +..+++|++|++++|.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 334444443333333444455555555555554 3333344555555555555555543222 5555555555555555
Q ss_pred ccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcc
Q 048828 119 FKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQI 198 (367)
Q Consensus 119 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 198 (367)
+.+.. ..++|++|++++|.++.... ..+++|++|++++|.+.+..+..+..+. +++.|++++|.+
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l 156 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVSC---------SRGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEI 156 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEEE---------CCCSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCC
T ss_pred ccccc-----CCCCcCEEECCCCccCCcCc---------cccCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCC
Confidence 54322 22555566665555543221 1235566666666666533333333333 367777777766
Q ss_pred cccCCccc-cCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcc
Q 048828 199 SGTIPPGI-RNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSS 277 (367)
Q Consensus 199 ~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 277 (367)
.+..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.+++.. ..+..+++|+.|++++|.++ .++..
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~ 232 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKA 232 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTT
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhH
Confidence 65555544 3577888888888887744 22 224778888888888888543 34777788888888888888 45667
Q ss_pred cccCCCCcEEEcCCCccc-CCcchhhhhhcccceeEeccCC-eeeeccCc
Q 048828 278 LGNCQNLISFRASHNKLT-GALPYQLLSITTLSLYLDLSYN-LLNGSLPL 325 (367)
Q Consensus 278 ~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~ll~~L~l~~n-~i~~~~p~ 325 (367)
+..+++|+.|++++|++. +.+|..+..++.+ +.+++.++ .+++..|.
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L-~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH-HHHHHHHHHHHHSSSSC
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccccc-eEEECCCchhccCCchh
Confidence 777888888888888887 6667777777766 88888754 45544443
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.4e-27 Score=207.34 Aligned_cols=225 Identities=20% Similarity=0.218 Sum_probs=128.7
Q ss_pred CCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCC
Q 048828 83 PNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSS 162 (367)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (367)
.++++|++++|.+. .+|..+.++++|++|++++|.+. ..|..+..+++|++|++++|.++. +...+..+++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-------lp~~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-------LPASIASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC-------CCGGGGGCTT
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc-------CcHHHhcCcC
Confidence 44555555555444 34444444555555555555444 334444445555555555554431 1123444455
Q ss_pred CcEEEcccCccccccChhhhh--------hcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCcc
Q 048828 163 LKSLSLYDNQFGGELPHSIAN--------LSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELK 234 (367)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~--------~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 234 (367)
|++|++++|.+.+.+|..+.. ...+|+.|++++|.+. .+|..+..+++|++|++++|.++ ..+..+..++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~ 229 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCT
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCC
Confidence 555555554444344433321 1123666666666555 45555666667777777777666 3444566667
Q ss_pred CCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEec
Q 048828 235 NLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDL 314 (367)
Q Consensus 235 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l 314 (367)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..++.+ +.+++
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L-~~l~l 308 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN-CIILV 308 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT-CEEEC
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc-eEEeC
Confidence 77777777766666666666667777777777766666666666677777777777777766777777766666 66666
Q ss_pred cCCee
Q 048828 315 SYNLL 319 (367)
Q Consensus 315 ~~n~i 319 (367)
..+.+
T Consensus 309 ~~~~~ 313 (328)
T 4fcg_A 309 PPHLQ 313 (328)
T ss_dssp CGGGS
T ss_pred CHHHH
Confidence 55443
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.9e-28 Score=215.25 Aligned_cols=269 Identities=19% Similarity=0.120 Sum_probs=215.1
Q ss_pred CCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEc
Q 048828 11 ALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90 (367)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 90 (367)
.++..+++.+.+.......+..+++|++|++++|.++...+..|..+++|++|++++|.+.+. +. +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh--hhhcCCCCEEEC
Confidence 455666666666544555566778999999999999988888999999999999999998743 33 578999999999
Q ss_pred cCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEccc
Q 048828 91 GGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYD 170 (367)
Q Consensus 91 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (367)
++|.++.. + ..++|++|++++|.+.+..+. .+++|++|++++|.++.... ..+..+++|++|++++
T Consensus 88 s~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 88 NNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLDLKL 153 (317)
T ss_dssp CSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG------BCTGGGSSEEEEECTT
T ss_pred cCCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc------hhhhccCCCCEEECCC
Confidence 99988743 3 248999999999998866543 46889999999999875443 3556789999999999
Q ss_pred CccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccC
Q 048828 171 NQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSI 250 (367)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 250 (367)
|.+.+..+..+.....+++.|++++|.+..... ...+++|++|++++|.+++. +..+..+++|+.|++++|.++ .+
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EE
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-ch
Confidence 999866666665444569999999999886533 33589999999999999954 445888999999999999999 56
Q ss_pred CccccCCCCCCeEEccCCeec-cccCcccccCCCCcEEEcCCC-cccCCcch
Q 048828 251 PPSLGNLTKLADLALSFNNLQ-GNIPSSLGNCQNLISFRASHN-KLTGALPY 300 (367)
Q Consensus 251 ~~~l~~~~~L~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~ 300 (367)
|..+..+++|+.|++++|.+. +..+..+..+++|+.++++++ .+.+..|.
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 777888999999999999998 667778888999999999865 45554443
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.2e-26 Score=214.29 Aligned_cols=249 Identities=23% Similarity=0.279 Sum_probs=102.8
Q ss_pred CCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCc-------------ceeecccccccccCC
Q 048828 9 LSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSL-------------ELIYLTVNRFSGSLP 75 (367)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~~ 75 (367)
.++|++|++++|.+ +.+|..+.++++|++|++++|.+.+..|..++.+.+| ++|++++|.+. .+|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 35556666665555 3555555556666666666655555555555554443 55555555554 333
Q ss_pred hhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCcccc
Q 048828 76 FDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVT 155 (367)
Q Consensus 76 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 155 (367)
. ..++|++|++++|.++. +|.. .++|++|++++|.+.+... ..++|++|++++|.++.. .
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~l--------p 147 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEKL--------P 147 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSSC--------C
T ss_pred C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCCC--------c
Confidence 2 13455555555555542 3322 2445555555544442111 013445555544444311 1
Q ss_pred ccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCC--------------------CcEE
Q 048828 156 SLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVN--------------------LVAL 215 (367)
Q Consensus 156 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~--------------------L~~L 215 (367)
.+..+++|++|++++|.+. .+|..+ .+++.|++++|.+.+ .| .+..+++ |++|
T Consensus 148 ~~~~l~~L~~L~l~~N~l~-~lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L 220 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLK-KLPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220 (454)
T ss_dssp CCTTCTTCCEEECCSSCCS-CCCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ccCCCCCCCEEECCCCcCc-ccCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEE
Confidence 2344444444555444444 222211 134444444444443 22 2444444 5555
Q ss_pred EccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 216 TMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 216 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
++++|.++ ..|. +..+++|+.|++++|++++ .|.. +++|+.|++++|.+.+ ++.. .++|+.|++++|+++
T Consensus 221 ~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp ECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 55555444 3332 4455555555555555552 2221 2455555555555543 2221 245666666666555
Q ss_pred C
Q 048828 296 G 296 (367)
Q Consensus 296 ~ 296 (367)
+
T Consensus 291 ~ 291 (454)
T 1jl5_A 291 G 291 (454)
T ss_dssp E
T ss_pred c
Confidence 3
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.1e-26 Score=205.91 Aligned_cols=230 Identities=21% Similarity=0.254 Sum_probs=145.2
Q ss_pred CcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEc
Q 048828 59 SLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNL 138 (367)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 138 (367)
.++.|++++|.+. .+|..++ .+++|++|++++|.+. .+|..+.++++|++|++++|.+. ..|..+..+++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3444444444443 3333322 2444444444444443 33333444444444444444443 22333444444444444
Q ss_pred CCCcccCcCCCCC---ccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEE
Q 048828 139 EQNNLGMGTANDL---DFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVAL 215 (367)
Q Consensus 139 ~~~~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 215 (367)
++|.+....+..+ .....+..+++|++|++++|.+. .+|..+..+.. |+.|++++|.+.+ .+..+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT-CCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC-CCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 4433222111100 01122345677888888888777 66766666554 8888888888774 55568888889999
Q ss_pred EccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 216 TMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 216 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.+.+..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99988888788888888889999999998888788888888899999999998888888888989999999988877654
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.6e-25 Score=213.18 Aligned_cols=267 Identities=26% Similarity=0.328 Sum_probs=211.5
Q ss_pred CCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEE
Q 048828 10 SALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELG 89 (367)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 89 (367)
.+++.|+++++.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 46899999999988 5666554 79999999999998 4554 5789999999999987 6775 679999999
Q ss_pred ccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcc
Q 048828 90 VGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLY 169 (367)
Q Consensus 90 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 169 (367)
+++|.++ .+|. .+++|+.|++++|.+... +. .+++|++|++++|.++.... .+++|+.|+++
T Consensus 108 Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~ 169 (622)
T 3g06_A 108 IFSNPLT-HLPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----------LPSELCKLWAY 169 (622)
T ss_dssp ECSCCCC-CCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECC
T ss_pred CcCCcCC-CCCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcCC----------ccCCCCEEECC
Confidence 9999988 4454 578899999999998753 32 35899999999998864321 34689999999
Q ss_pred cCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCcccccc
Q 048828 170 DNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGS 249 (367)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 249 (367)
+|.+. .++ ....+|+.|++++|.+.+ ++. ..++|+.|++++|.++ ..+. .+++|+.|++++|.+++
T Consensus 170 ~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 170 NNQLT-SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS- 235 (622)
T ss_dssp SSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-
T ss_pred CCCCC-CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-
Confidence 99888 455 234569999999998885 333 2478999999999988 4443 24789999999999985
Q ss_pred CCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccC
Q 048828 250 IPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFT 329 (367)
Q Consensus 250 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~ 329 (367)
+| ..+++|+.|++++|.++. +|. .+++|+.|++++|+++ .+|..+..++.+ +.|++++|++++..|..+..
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSCCCCHHHHHHHHH
T ss_pred CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCCCCCCcCHHHHHh
Confidence 44 455889999999999884 444 5789999999999998 788888888888 99999999998777775543
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=7.3e-26 Score=211.04 Aligned_cols=234 Identities=19% Similarity=0.124 Sum_probs=147.0
Q ss_pred CcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEc
Q 048828 59 SLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNL 138 (367)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 138 (367)
+|++|++++|.+. .++...+..+++|++|++++|.++...+ +..+++|++|++++|.+.+..+ .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 5556666665555 3443444555666666666665553332 5556666666666665553322 256666666
Q ss_pred CCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCcccc-CCCCCcEEEc
Q 048828 139 EQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIR-NLVNLVALTM 217 (367)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l 217 (367)
++|.++.... ..+++|+.|++++|.+.+..+..+..+.. |+.|++++|.+.+..+..+. .+++|+.|++
T Consensus 107 ~~N~l~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 107 ANNNISRVSC---------SRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CSSCCCCEEE---------CCCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred cCCcCCCCCc---------cccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 6666543322 12356666677666666444444444443 77777777777665665554 6778888888
Q ss_pred cCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc-C
Q 048828 218 DSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT-G 296 (367)
Q Consensus 218 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~-~ 296 (367)
++|.+++..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +
T Consensus 177 s~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 177 QYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 8888775422 2347788888888888875444 36677888888888888874 5666777788888888888876 5
Q ss_pred CcchhhhhhcccceeEecc
Q 048828 297 ALPYQLLSITTLSLYLDLS 315 (367)
Q Consensus 297 ~~~~~~~~~~~ll~~L~l~ 315 (367)
.+|..+..++.+ +.+++.
T Consensus 253 ~~~~~~~~l~~L-~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRV-QTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHH-HHHHHH
T ss_pred chHHHHHhCCCC-cEEecc
Confidence 566666666655 666665
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.1e-27 Score=211.04 Aligned_cols=250 Identities=22% Similarity=0.223 Sum_probs=178.6
Q ss_pred CCCCCCcEEEccCccccCCcchhccCCCCcceeeccccccc-ccCChhhh------hCCCCccEEEccCCcceeeCcccc
Q 048828 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFS-GSLPFDIL------VNLPNLKELGVGGNNFVGSIPDSL 103 (367)
Q Consensus 31 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~l 103 (367)
...++|+.+++++|.+ .+|..+... |+.|++++|.+. ..++..+. .++++|++|++++|.+.+..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4456677778888777 455544433 778888887774 23443331 157888888888888876667665
Q ss_pred --cCCCCCcEEeCCCCcccccccccccCC-----CCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccc
Q 048828 104 --SNASNLERLDLPGNQFKGKVSIDFSSL-----KNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGE 176 (367)
Q Consensus 104 --~~l~~L~~L~l~~n~l~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 176 (367)
..+++|++|++++|.+.+. +..+..+ ++|++|++++|++....+ ..+..+++|++|++++|.+.+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC------EQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT------TTCCCCSSCCEEECCSCTTCHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH------HHhccCCCCCEEECCCCCcCcc
Confidence 7788888888888888766 5555554 788888888888765443 4566778888888888876533
Q ss_pred --cChhh-hhhcccceEEEecCCcccc---cCCccccCCCCCcEEEccCCccccccc-ccccCccCCcEEEccCcccccc
Q 048828 177 --LPHSI-ANLSSTMIQFSIGGNQISG---TIPPGIRNLVNLVALTMDSNQLHGTIP-DVIGELKNLQVLFLFRNFLQGS 249 (367)
Q Consensus 177 --~~~~~-~~~~~~L~~l~l~~~~~~~---~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~ 249 (367)
.+..+ .....+|+.|++++|.+.+ .....+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++ .
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 267 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-S
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-h
Confidence 12222 1223358888888888773 222345677899999999999986653 44556789999999999998 5
Q ss_pred CCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccC
Q 048828 250 IPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTG 296 (367)
Q Consensus 250 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 296 (367)
+|..+. ++|+.|++++|.+++. |. +..+++|+.|++++|++++
T Consensus 268 ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 268 VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 666555 8899999999999865 54 8889999999999999874
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.6e-24 Score=206.23 Aligned_cols=255 Identities=26% Similarity=0.294 Sum_probs=209.5
Q ss_pred CCCchhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 1 QLPDFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 1 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
+||..+. ++|+.|++++|.+.+ ++. .+++|++|++++|.++ .+|. .+++|++|++++|.+. .++.
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---- 118 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---- 118 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC----
T ss_pred ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC----
Confidence 3676665 899999999999984 444 5689999999999998 4554 6799999999999998 6665
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCC
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNC 160 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
.+++|+.|++++|.++ .+|.. +++|++|++++|.+.+. +. .+++|++|++++|.++... ..+
T Consensus 119 ~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~----------~~~ 180 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP----------MLP 180 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC----------CCC
T ss_pred CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCc----------ccC
Confidence 5799999999999988 45553 48999999999998854 32 4678999999999886432 346
Q ss_pred CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEE
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLF 240 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 240 (367)
++|+.|++++|.+. .++.. ..+++.|++++|.+.. ++. .+++|+.|++++|.+++ .+ ..+++|+.|+
T Consensus 181 ~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~ 247 (622)
T 3g06_A 181 SGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELM 247 (622)
T ss_dssp TTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEE
T ss_pred CCCcEEECCCCCCC-CCCCc----cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEE
Confidence 89999999999988 45542 3469999999999884 443 34889999999999984 44 4568999999
Q ss_pred ccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhc
Q 048828 241 LFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSIT 306 (367)
Q Consensus 241 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 306 (367)
+++|.+++ +|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus 248 Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 248 VSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999994 444 5689999999999999 6788899999999999999999988888777654
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.3e-27 Score=207.22 Aligned_cols=250 Identities=20% Similarity=0.179 Sum_probs=197.6
Q ss_pred hccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcce-eeCccccc-------CCCCCcEEeCCCCccccccc
Q 048828 53 WICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFV-GSIPDSLS-------NASNLERLDLPGNQFKGKVS 124 (367)
Q Consensus 53 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~ 124 (367)
.++..++|+.+++++|.+ .+|..+... |++|++++|.+. ..++..+. ++++|++|++++|.+.+..+
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 455677899999999998 677766543 888899998884 34555444 78999999999999998777
Q ss_pred ccc--cCCCCCCeEEcCCCcccCcCCCCCccccccCCC-----CCCcEEEcccCccccccChhhhhhcccceEEEecCCc
Q 048828 125 IDF--SSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNC-----SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQ 197 (367)
Q Consensus 125 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 197 (367)
..+ ..+++|++|++++|.++.. + ..+..+ ++|++|++++|.+.+..+..+..+.. ++.|++++|.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~ 184 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-D------AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNP 184 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-S------SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS-CCEEECCSCT
T ss_pred HHHHHhcCCCccEEEccCCCCcch-h------HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC-CCEEECCCCC
Confidence 775 8899999999999998755 2 222333 89999999999998655566666654 9999999998
Q ss_pred cccc--CCcc--ccCCCCCcEEEccCCccccc---ccccccCccCCcEEEccCccccccCC-ccccCCCCCCeEEccCCe
Q 048828 198 ISGT--IPPG--IRNLVNLVALTMDSNQLHGT---IPDVIGELKNLQVLFLFRNFLQGSIP-PSLGNLTKLADLALSFNN 269 (367)
Q Consensus 198 ~~~~--~~~~--l~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~n~ 269 (367)
+.+. .+.. +..+++|++|++++|.+++. ....+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 7643 2223 37889999999999999832 22344577899999999999997664 455668999999999999
Q ss_pred eccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeee
Q 048828 270 LQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNG 321 (367)
Q Consensus 270 i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~ 321 (367)
++ .+|..+. ++|+.|++++|++++. |. +..++.+ ++|++++|+|++
T Consensus 265 l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L-~~L~L~~N~l~~ 310 (312)
T 1wwl_A 265 LK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV-GNLSLKGNPFLD 310 (312)
T ss_dssp CS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE-EEEECTTCTTTC
T ss_pred cC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC-CEEeccCCCCCC
Confidence 98 5666665 8999999999999854 66 7788888 999999999874
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1e-25 Score=210.03 Aligned_cols=238 Identities=19% Similarity=0.143 Sum_probs=189.1
Q ss_pred CCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcE
Q 048828 32 LLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLER 111 (367)
Q Consensus 32 ~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 111 (367)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. +. .++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l-~~----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL-LV----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEE-EE----CTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCC-CC----CCCcCE
Confidence 34588999999998887777888888999999999988874433 57888999999999888743 32 378999
Q ss_pred EeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEE
Q 048828 112 LDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQF 191 (367)
Q Consensus 112 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 191 (367)
|++++|.+.+..+. .+++|++|++++|.++...+ ..+..+++|+.|++++|.+.+..+..+.....+|+.|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD------LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG------BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc------hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 99999988866543 45789999999998875433 3556788999999999998876777766444559999
Q ss_pred EecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeec
Q 048828 192 SIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 192 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~ 271 (367)
++++|.+.+..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.
T Consensus 175 ~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 175 NLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 999999886533 3468999999999999995544 47889999999999999994 6667888999999999999998
Q ss_pred -cccCcccccCCCCcEEEcC
Q 048828 272 -GNIPSSLGNCQNLISFRAS 290 (367)
Q Consensus 272 -~~~~~~~~~~~~L~~L~l~ 290 (367)
+..+..+..++.++.++++
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 5566677778888877775
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.7e-24 Score=183.59 Aligned_cols=209 Identities=22% Similarity=0.208 Sum_probs=123.7
Q ss_pred CCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEE
Q 048828 58 SSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLN 137 (367)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 137 (367)
++|++|++++|.+. .++...+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35666666666665 44444455666666666666666655555566666666666666666655555566666666666
Q ss_pred cCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCccccc-CCccccCCCCCcEEE
Q 048828 138 LEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGT-IPPGIRNLVNLVALT 216 (367)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~ 216 (367)
+++|.+..... ..+..+++|++|++++|.+. .. .|..+..+++|++|+
T Consensus 107 l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~-------------------------~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 107 AVETNLASLEN------FPIGHLKTLKELNVAHNLIQ-------------------------SFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CTTSCCCCSTT------CCCTTCTTCCEEECCSSCCC-------------------------CCCCCGGGGGCTTCCEEE
T ss_pred CCCCCccccCc------hhcccCCCCCEEECcCCccc-------------------------eecCchhhccCCCCCEEE
Confidence 66665543222 12334444444444444433 21 345566666777777
Q ss_pred ccCCcccccccccccCccCCc----EEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCC
Q 048828 217 MDSNQLHGTIPDVIGELKNLQ----VLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHN 292 (367)
Q Consensus 217 l~~n~~~~~~~~~~~~~~~L~----~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 292 (367)
+++|.+++..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 777777655555555555555 677777777654444443 346777777777776555555666777777777777
Q ss_pred cccCCcc
Q 048828 293 KLTGALP 299 (367)
Q Consensus 293 ~i~~~~~ 299 (367)
++.+..+
T Consensus 235 ~~~c~c~ 241 (276)
T 2z62_A 235 PWDCSCP 241 (276)
T ss_dssp CBCCCTT
T ss_pred cccccCC
Confidence 7765443
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.7e-24 Score=184.55 Aligned_cols=226 Identities=22% Similarity=0.178 Sum_probs=168.1
Q ss_pred eecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCc
Q 048828 63 IYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNN 142 (367)
Q Consensus 63 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~ 142 (367)
++..+..+. .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 455555554 566543 3578888888888876666677888888888888888776666667777777777777776
Q ss_pred ccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcc
Q 048828 143 LGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQL 222 (367)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 222 (367)
++.... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+
T Consensus 88 l~~~~~------~~~~~l~~L~~L~l~~n~-------------------------l~~~~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 88 IQSLAL------GAFSGLSSLQKLVAVETN-------------------------LASLENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp CCEECT------TTTTTCTTCCEEECTTSC-------------------------CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred cCccCh------hhhcCCccccEEECCCCC-------------------------ccccCchhcccCCCCCEEECcCCcc
Confidence 643322 234455555555555554 4434444578889999999999999
Q ss_pred ccc-ccccccCccCCcEEEccCccccccCCccccCCCCCC----eEEccCCeeccccCcccccCCCCcEEEcCCCcccCC
Q 048828 223 HGT-IPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLA----DLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGA 297 (367)
Q Consensus 223 ~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~----~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 297 (367)
++. .+..+..+++|+.|++++|++++..+..+..+++|+ .+++++|.+.+..+..+ ...+|++|++++|++++.
T Consensus 137 ~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSV 215 (276)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCC
T ss_pred ceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeec
Confidence 864 478899999999999999999977777776666666 89999999996554444 455899999999999965
Q ss_pred cchhhhhhcccceeEeccCCeeeeccCc
Q 048828 298 LPYQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 298 ~~~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
.+..+..++.+ ++|++++|+++|.+|.
T Consensus 216 ~~~~~~~l~~L-~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 216 PDGIFDRLTSL-QKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CTTTTTTCCSC-CEEECCSSCBCCCTTT
T ss_pred CHhHhcccccc-cEEEccCCcccccCCc
Confidence 55556677777 9999999999988873
No 71
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=4.2e-26 Score=205.16 Aligned_cols=265 Identities=18% Similarity=0.251 Sum_probs=144.9
Q ss_pred EEccCcccCCCCccccCCCCCCcEEEccCccccCCcc----hhccCCC-CcceeecccccccccCChhhhhCC-----CC
Q 048828 15 LLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFP----RWICNIS-SLELIYLTVNRFSGSLPFDILVNL-----PN 84 (367)
Q Consensus 15 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~-----~~ 84 (367)
.+++.+.+.+..+..+...++|++|++++|.+....+ .++..++ +|++|++++|.+.+..+..+ ..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCC
Confidence 4566677766666655555567777777777765555 5566666 67777777776663323222 222 66
Q ss_pred ccEEEccCCcceeeCccc----ccCC-CCCcEEeCCCCcccccccccc----cC-CCCCCeEEcCCCcccCcCCCCCccc
Q 048828 85 LKELGVGGNNFVGSIPDS----LSNA-SNLERLDLPGNQFKGKVSIDF----SS-LKNLWWLNLEQNNLGMGTANDLDFV 154 (367)
Q Consensus 85 L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~~~~~~~ 154 (367)
|++|++++|.++...+.. +..+ ++|++|++++|.+....+..+ .. .++|++|++++|.++..+.. .+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD--ELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH--HHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH--HHH
Confidence 666666666665333332 3333 566666666666654433332 22 23555555555544322211 111
Q ss_pred cccCCCC-CCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCC-CCCcEEEccCCccccc----ccc
Q 048828 155 TSLTNCS-SLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNL-VNLVALTMDSNQLHGT----IPD 228 (367)
Q Consensus 155 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~----~~~ 228 (367)
..+..++ +|++|++++|.+.+..+..+. ..+..+ ++|++|++++|.+++. .+.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~---------------------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELA---------------------KFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHH---------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHH---------------------HHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 1222222 444444444444322222211 123344 4777777777777643 233
Q ss_pred cccC-ccCCcEEEccCccccccCC----ccccCCCCCCeEEccCCeeccc-------cCcccccCCCCcEEEcCCCcccC
Q 048828 229 VIGE-LKNLQVLFLFRNFLQGSIP----PSLGNLTKLADLALSFNNLQGN-------IPSSLGNCQNLISFRASHNKLTG 296 (367)
Q Consensus 229 ~~~~-~~~L~~L~l~~~~i~~~~~----~~l~~~~~L~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~n~i~~ 296 (367)
.+.. .++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|++.+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3333 3478888888887775433 3345667788888888774321 22345567778888888888876
Q ss_pred Ccchhhh
Q 048828 297 ALPYQLL 303 (367)
Q Consensus 297 ~~~~~~~ 303 (367)
..+..+.
T Consensus 299 ~~~~~~~ 305 (362)
T 3goz_A 299 SHSIPIS 305 (362)
T ss_dssp GGCHHHH
T ss_pred cchHHHH
Confidence 5554443
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.7e-23 Score=179.83 Aligned_cols=204 Identities=21% Similarity=0.187 Sum_probs=138.2
Q ss_pred ccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCC
Q 048828 54 ICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNL 133 (367)
Q Consensus 54 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 133 (367)
+.+++++++++++++.++ .+|..+ .+++++|++++|.+....+..+..+++|++|++++|.+....+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 455666777777776666 565543 2566666666666665555566666666666666666654322 1444555
Q ss_pred CeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCc
Q 048828 134 WWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLV 213 (367)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 213 (367)
++|++++|.+ . .+|..+..++. ++.|++++|+++...+..|..+++|+
T Consensus 80 ~~L~Ls~N~l------------------------------~-~l~~~~~~l~~-L~~L~l~~N~l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 80 GTLDLSHNQL------------------------------Q-SLPLLGQTLPA-LTVLDVSFNRLTSLPLGALRGLGELQ 127 (290)
T ss_dssp CEEECCSSCC------------------------------S-SCCCCTTTCTT-CCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred CEEECCCCcC------------------------------C-cCchhhccCCC-CCEEECCCCcCcccCHHHHcCCCCCC
Confidence 5555554444 3 33333322222 55566666666655567788888899
Q ss_pred EEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCc
Q 048828 214 ALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNK 293 (367)
Q Consensus 214 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~ 293 (367)
+|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|+
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 9999999888666667778888999999999888666667778888999999988888 567777778888888888888
Q ss_pred ccC
Q 048828 294 LTG 296 (367)
Q Consensus 294 i~~ 296 (367)
+..
T Consensus 207 ~~C 209 (290)
T 1p9a_G 207 WLC 209 (290)
T ss_dssp BCC
T ss_pred ccC
Confidence 763
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-22 Score=175.39 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=126.3
Q ss_pred CCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCC
Q 048828 83 PNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSS 162 (367)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (367)
.+.+.++++++.++ .+|..+. +++++|++++|.+....+..+..+++|++|++++|.++.... ..+..+++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~------~~~~~l~~ 86 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA------GIFKELKN 86 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT------TTTSSCTT
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh------hhhcCCCC
Confidence 45778888888877 4565443 578888888888887766678888888888888887764332 23456777
Q ss_pred CcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEcc
Q 048828 163 LKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLF 242 (367)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 242 (367)
|++|++++|.+....+..+..+. +|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 88888877776632222223332 36666666666655555555566666666666666654444445555666666666
Q ss_pred CccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 243 RNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 243 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 66665444445555566666666666555444444555566666666666554
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.3e-22 Score=174.75 Aligned_cols=202 Identities=22% Similarity=0.239 Sum_probs=117.8
Q ss_pred CcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEc
Q 048828 59 SLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNL 138 (367)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 138 (367)
..+.++++++.++ .+|..+ .+++++|++++|.+....+..+.++++|++|++++|.+....+..+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3455666666665 555433 245666666666665444445666666666666666666554445566666666666
Q ss_pred CCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEcc
Q 048828 139 EQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMD 218 (367)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 218 (367)
++|.++.... ..+..+++|++|++++|.+....+..+..+. +|+.|++++|.+....+..+..+++|++|+++
T Consensus 93 ~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 93 TDNKLQALPI------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CSSCCCCCCT------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcCCcCCH------hHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 6666543332 2344556666666666666533333333333 36666666666665555556666666666666
Q ss_pred CCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeec
Q 048828 219 SNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 219 ~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~ 271 (367)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 66666544445556666666666666666544455556666666666666554
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.7e-23 Score=179.31 Aligned_cols=228 Identities=23% Similarity=0.219 Sum_probs=146.3
Q ss_pred CcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEc
Q 048828 59 SLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNL 138 (367)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 138 (367)
.+..+++..+.+.+... ...+++|+.|+++++.+. .+ ..+..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccccc---cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 44455555555542222 245677777777777765 22 3466677777777777776642 24566666666666
Q ss_pred CCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEcc
Q 048828 139 EQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMD 218 (367)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 218 (367)
++|.++.... ..+..+++|++|++++| .+.+..+..+..+++|++|+++
T Consensus 93 ~~n~l~~~~~------~~~~~l~~L~~L~L~~n-------------------------~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 93 TGNQLQSLPN------GVFDKLTNLKELVLVEN-------------------------QLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTSCCCCCCT------TTTTTCTTCCEEECTTS-------------------------CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCccCccCh------hHhcCCcCCCEEECCCC-------------------------cCCccCHHHhccCCCCCEEECC
Confidence 6665543222 22344455555555555 4444445556677777777777
Q ss_pred CCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCc
Q 048828 219 SNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGAL 298 (367)
Q Consensus 219 ~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 298 (367)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 77777555566677777888888887777666666677778888888888777666666777788888888888776543
Q ss_pred chhhhhhcccceeEeccCCeeeeccCccccCCCC
Q 048828 299 PYQLLSITTLSLYLDLSYNLLNGSLPLQMFTGRR 332 (367)
Q Consensus 299 ~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~~~~ 332 (367)
| .+ +++++.+|.++|.+|.+++....
T Consensus 222 ~-------~l-~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 222 P-------GI-RYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp T-------TT-HHHHHHHHHTGGGBBCTTSCBCG
T ss_pred c-------HH-HHHHHHHHhCCCcccCcccccCC
Confidence 3 33 67777777787788877766443
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.5e-24 Score=183.16 Aligned_cols=230 Identities=25% Similarity=0.268 Sum_probs=179.0
Q ss_pred CCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEe
Q 048828 34 RNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLD 113 (367)
Q Consensus 34 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 113 (367)
.++..+++.++.+... .....+++|+.|+++++.+. .++. +..+++|++|++++|.+.. + ..+..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEE
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEE
Confidence 3455566666665533 33556889999999999987 5543 5689999999999999874 3 4789999999999
Q ss_pred CCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEe
Q 048828 114 LPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSI 193 (367)
Q Consensus 114 l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 193 (367)
+++|.+.+..+..+..+++|++|++++|.++.... ..+..+++|++|++++|.+.
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~------------------- 146 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD------GVFDKLTNLTYLNLAHNQLQ------------------- 146 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTTCCEEECCSSCCC-------------------
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCH------HHhccCCCCCEEECCCCccC-------------------
Confidence 99999998877778999999999999998864433 23556677777777766554
Q ss_pred cCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccc
Q 048828 194 GGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGN 273 (367)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~ 273 (367)
+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 147 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 219 (272)
T 3rfs_A 147 ------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 219 (272)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-
T ss_pred ------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-
Confidence 2344456677888888888888886666667788889999999988887777778888899999999987763
Q ss_pred cCcccccCCCCcEEEcCCCcccCCcchhhhhhccc
Q 048828 274 IPSSLGNCQNLISFRASHNKLTGALPYQLLSITTL 308 (367)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~l 308 (367)
.|++++.++++.|.++|.+|..++.++..
T Consensus 220 ------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 220 ------TCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp ------CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ------cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 36788889999999998888887766543
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.8e-25 Score=202.83 Aligned_cols=252 Identities=16% Similarity=0.193 Sum_probs=146.5
Q ss_pred CccccCCCCCCcEEEccCccccCCcc----hhccCCCCcceeecccccc---cccCChhh------hhCCCCccEEEccC
Q 048828 26 IPTTLGLLRNLVYLNVAENQFSGMFP----RWICNISSLELIYLTVNRF---SGSLPFDI------LVNLPNLKELGVGG 92 (367)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~~~~---~~~~~~~~------~~~~~~L~~L~l~~ 92 (367)
++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+ .+.+|..+ +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33444555666666666666553322 2344566666666665432 22223222 23455555555555
Q ss_pred Cccee----eCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCC--------
Q 048828 93 NNFVG----SIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNC-------- 160 (367)
Q Consensus 93 ~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-------- 160 (367)
|.+.. .++..+..+++|++|++++|.+....+..+.. .+..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------------~l~~l~~~~~~~~ 157 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------------ALQELAVNKKAKN 157 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------------HHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------------HHHHHhhhhhccc
Confidence 55543 23334455555555555555554322222211 11112
Q ss_pred -CCCcEEEcccCccccc-cC---hhhhhhcccceEEEecCCcccc-----cCCccccCCCCCcEEEccCCccc----ccc
Q 048828 161 -SSLKSLSLYDNQFGGE-LP---HSIANLSSTMIQFSIGGNQISG-----TIPPGIRNLVNLVALTMDSNQLH----GTI 226 (367)
Q Consensus 161 -~~L~~L~l~~~~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~n~~~----~~~ 226 (367)
++|++|++++|.+... .+ ..+.... +|+.|++++|.+.. ..+..+..+++|++|++++|.++ ...
T Consensus 158 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 158 APPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 4555555555554311 11 1122222 35555555555542 22336778889999999999986 356
Q ss_pred cccccCccCCcEEEccCcccccc----CCccc--cCCCCCCeEEccCCeecc----ccCccc-ccCCCCcEEEcCCCccc
Q 048828 227 PDVIGELKNLQVLFLFRNFLQGS----IPPSL--GNLTKLADLALSFNNLQG----NIPSSL-GNCQNLISFRASHNKLT 295 (367)
Q Consensus 227 ~~~~~~~~~L~~L~l~~~~i~~~----~~~~l--~~~~~L~~L~l~~n~i~~----~~~~~~-~~~~~L~~L~l~~n~i~ 295 (367)
+..+..+++|+.|++++|.+++. ++..+ +.+++|+.|++++|.++. .++..+ .++++|+.|++++|+++
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 66778889999999999998764 34455 338999999999999986 355565 56899999999999998
Q ss_pred CCcc--hhhhh
Q 048828 296 GALP--YQLLS 304 (367)
Q Consensus 296 ~~~~--~~~~~ 304 (367)
+..+ ..+..
T Consensus 317 ~~~~~~~~l~~ 327 (386)
T 2ca6_A 317 EEDDVVDEIRE 327 (386)
T ss_dssp TTSHHHHHHHH
T ss_pred cchhHHHHHHH
Confidence 7664 44444
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.4e-24 Score=195.25 Aligned_cols=250 Identities=21% Similarity=0.227 Sum_probs=172.2
Q ss_pred CchhccCCCCcEEEccCcccCCCCc----cccCCCC-CCcEEEccCccccCCcchhccCC-----CCcceeecccccccc
Q 048828 3 PDFIGNLSALGILLIRWNSLGGQIP----TTLGLLR-NLVYLNVAENQFSGMFPRWICNI-----SSLELIYLTVNRFSG 72 (367)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~~~~~~ 72 (367)
|..++..++|++|++++|.+.+..+ ..+..++ +|++|++++|.+....+..+..+ ++|++|++++|.+.+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 4455666679999999999997776 6778888 89999999999987777766664 999999999999984
Q ss_pred cCChhh---hhCC-CCccEEEccCCcceeeCccc----ccC-CCCCcEEeCCCCcccccccc----cccCCC-CCCeEEc
Q 048828 73 SLPFDI---LVNL-PNLKELGVGGNNFVGSIPDS----LSN-ASNLERLDLPGNQFKGKVSI----DFSSLK-NLWWLNL 138 (367)
Q Consensus 73 ~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~n~l~~~~~~----~l~~~~-~L~~L~l 138 (367)
..+..+ +..+ ++|++|++++|.++...+.. +.. .++|++|++++|.+...... .+...+ +|++|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 444322 3344 89999999999998554433 344 36999999999999854433 345555 9999999
Q ss_pred CCCcccCcCCCCCccccccCCC-CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccC-CCCCcEEE
Q 048828 139 EQNNLGMGTANDLDFVTSLTNC-SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRN-LVNLVALT 216 (367)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~L~ 216 (367)
++|.++..... .+...+..+ ++|++|++++|.+.+.....+. ..+.. .++|++|+
T Consensus 175 s~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~---------------------~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 175 RGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELA---------------------YIFSSIPNHVVSLN 231 (362)
T ss_dssp TTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH---------------------HHHHHSCTTCCEEE
T ss_pred cCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHHH---------------------HHHhcCCCCceEEE
Confidence 99998755432 222344555 4899999999988743222221 11222 23566666
Q ss_pred ccCCccccccc----ccccCccCCcEEEccCcccccc-------CCccccCCCCCCeEEccCCeeccccC
Q 048828 217 MDSNQLHGTIP----DVIGELKNLQVLFLFRNFLQGS-------IPPSLGNLTKLADLALSFNNLQGNIP 275 (367)
Q Consensus 217 l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~i~~~-------~~~~l~~~~~L~~L~l~~n~i~~~~~ 275 (367)
+++|.+++..+ ..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+....+
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 66666654322 2334556677777777764322 22345566777888888887765433
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=1.1e-25 Score=215.80 Aligned_cols=306 Identities=15% Similarity=0.085 Sum_probs=146.0
Q ss_pred cCCCCcEEEccCcccCCCC----ccccCCCCCCcEEEccCccccC----CcchhccCCCCcceeecccccccccCChhhh
Q 048828 8 NLSALGILLIRWNSLGGQI----PTTLGLLRNLVYLNVAENQFSG----MFPRWICNISSLELIYLTVNRFSGSLPFDIL 79 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 79 (367)
++++|++|++++|.+.+.. +.....+++|++|++++|.+.+ .++..+..+++|++|++++|.+. .++ ..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~-~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELV-GFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGH-HHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHH-HHH
Confidence 5566666666666554332 2223445666666666665541 22333445566666666666554 333 334
Q ss_pred hCCCCccEEEccCCcce---eeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccc
Q 048828 80 VNLPNLKELGVGGNNFV---GSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTS 156 (367)
Q Consensus 80 ~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 156 (367)
..+++|++|+++..... ...+..+..+++|+.++++++.. ...+..+..+++|++|++++|.++.... ...
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~-----~~~ 313 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDH-----CTL 313 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHH-----HHH
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHH-----HHH
Confidence 45566666655532111 01112233444444444444321 1233334455666666666655422111 112
Q ss_pred cCCCCCCcEEEccc-----------------------------------CccccccChhhhhhcccceEEEecCCccccc
Q 048828 157 LTNCSSLKSLSLYD-----------------------------------NQFGGELPHSIANLSSTMIQFSIGGNQISGT 201 (367)
Q Consensus 157 ~~~~~~L~~L~l~~-----------------------------------~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 201 (367)
+..+++|++|++.+ +.+++.....+....++|+.|+++.+.+++.
T Consensus 314 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 23444444444442 2222111111122222355555544444433
Q ss_pred CCccccC-CCCCcEEEcc----CCccccc-----ccccccCccCCcEEEccCcc--ccccCCccc-cCCCCCCeEEccCC
Q 048828 202 IPPGIRN-LVNLVALTMD----SNQLHGT-----IPDVIGELKNLQVLFLFRNF--LQGSIPPSL-GNLTKLADLALSFN 268 (367)
Q Consensus 202 ~~~~l~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~~~~--i~~~~~~~l-~~~~~L~~L~l~~n 268 (367)
....+.. +++|++|++. .+.+++. .+..+.++++|+.|++++|. +++.....+ ..+++|+.|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 3333332 5556666554 3334421 12223445666666665432 333222222 23577777777777
Q ss_pred eeccc-cCcccccCCCCcEEEcCCCcccCCcchh-hhhhcccceeEeccCCeeeec
Q 048828 269 NLQGN-IPSSLGNCQNLISFRASHNKLTGALPYQ-LLSITTLSLYLDLSYNLLNGS 322 (367)
Q Consensus 269 ~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~~~~ll~~L~l~~n~i~~~ 322 (367)
.+++. .+..+..+++|+.|++++|++++..... ...++.+ ++|++++|++++.
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~ls~n~it~~ 528 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL-RYLWVQGYRASMT 528 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC-CEEEEESCBCCTT
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc-CeeECcCCcCCHH
Confidence 77642 2334466777888888887776443333 3345555 7788888777643
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.3e-22 Score=172.53 Aligned_cols=204 Identities=20% Similarity=0.200 Sum_probs=146.8
Q ss_pred ccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCC
Q 048828 29 TLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASN 108 (367)
Q Consensus 29 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 108 (367)
.+.+++++++++++++.++ .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.++.. +. ...+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTT
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCc
Confidence 3667889999999999998 4554443 68999999999998 66666678999999999999999854 33 378999
Q ss_pred CcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccc
Q 048828 109 LERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTM 188 (367)
Q Consensus 109 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 188 (367)
|++|++++|.+. ..+..+..+++|++|++++|+++.... ..+..+++|++|++++|.+.
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~------~~~~~l~~L~~L~L~~N~l~-------------- 137 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL------GALRGLGELQELYLKGNELK-------------- 137 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS------STTTTCTTCCEEECTTSCCC--------------
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH------HHHcCCCCCCEEECCCCCCC--------------
Confidence 999999999998 456667788888888888887764433 34555666666666666655
Q ss_pred eEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCC
Q 048828 189 IQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFN 268 (367)
Q Consensus 189 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n 268 (367)
...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|
T Consensus 138 -----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 138 -----------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp -----------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred -----------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 233344555666666666666666444445556666777777777666 44444555566777777766
Q ss_pred eec
Q 048828 269 NLQ 271 (367)
Q Consensus 269 ~i~ 271 (367)
++.
T Consensus 206 p~~ 208 (290)
T 1p9a_G 206 PWL 208 (290)
T ss_dssp CBC
T ss_pred Ccc
Confidence 654
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=3.9e-25 Score=211.89 Aligned_cols=292 Identities=13% Similarity=0.102 Sum_probs=193.9
Q ss_pred chhccCCCCcEEEccCcccCC----CCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeeccccccc--------
Q 048828 4 DFIGNLSALGILLIRWNSLGG----QIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFS-------- 71 (367)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~-------- 71 (367)
..+.++++|++|++++|.+.+ .++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 345678899999999888763 233445678899999999988763 5666777777777777642111
Q ss_pred ------------------ccCChhhhhCCCCccEEEccCCcceeeCc-ccccCCCCCcEEeCCCCccccc-ccccccCCC
Q 048828 72 ------------------GSLPFDILVNLPNLKELGVGGNNFVGSIP-DSLSNASNLERLDLPGNQFKGK-VSIDFSSLK 131 (367)
Q Consensus 72 ------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~ 131 (367)
+.++ .++..+++|++|++++|.+..... ..+..+++|++|+++ +.+... .+.....++
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred HhhccccccccCccccchhHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 0122 233456677777777766442222 234667777777776 333322 222235677
Q ss_pred CCCeEEcCC-----------CcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEec----CC
Q 048828 132 NLWWLNLEQ-----------NNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIG----GN 196 (367)
Q Consensus 132 ~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~----~~ 196 (367)
+|++|++++ +.++..+ .......+++|++|++..+.+++.....+....++|+.|+++ .+
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~-----~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRG-----LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHH-----HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred CCCEEEeecCccccccccccCccCHHH-----HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 888888873 2332111 112234589999999988888866666666645569999996 44
Q ss_pred ccccc-----CCccccCCCCCcEEEccCCc--ccccccccc-cCccCCcEEEccCcccccc-CCccccCCCCCCeEEccC
Q 048828 197 QISGT-----IPPGIRNLVNLVALTMDSNQ--LHGTIPDVI-GELKNLQVLFLFRNFLQGS-IPPSLGNLTKLADLALSF 267 (367)
Q Consensus 197 ~~~~~-----~~~~l~~~~~L~~L~l~~n~--~~~~~~~~~-~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~ 267 (367)
.+++. .+..+..+++|++|++++|. +++.....+ ..+++|+.|++++|.+++. .+..+..+++|+.|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 55532 22335679999999997644 554444333 3478999999999998863 334457789999999999
Q ss_pred Ceeccc-cCcccccCCCCcEEEcCCCcccCCcchhhh
Q 048828 268 NNLQGN-IPSSLGNCQNLISFRASHNKLTGALPYQLL 303 (367)
Q Consensus 268 n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 303 (367)
|.+++. .+.....+++|++|++++|++++.....+.
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 998754 334456799999999999999865444443
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.9e-24 Score=196.22 Aligned_cols=242 Identities=17% Similarity=0.235 Sum_probs=170.7
Q ss_pred hCCCCccEEEccCCcceee----CcccccCCCCCcEEeCCCCccc---cccccc-------ccCCCCCCeEEcCCCcccC
Q 048828 80 VNLPNLKELGVGGNNFVGS----IPDSLSNASNLERLDLPGNQFK---GKVSID-------FSSLKNLWWLNLEQNNLGM 145 (367)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~---~~~~~~-------l~~~~~L~~L~l~~~~~~~ 145 (367)
..+++|++|++++|.+... ++..+..+++|++|++++|.+. +..|.. +..+++|++|++++|.++.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 4455666666666655433 2233556666677766665332 222222 3567778888888777654
Q ss_pred cCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhc------------ccceEEEecCCcccc-cCC---ccccCC
Q 048828 146 GTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLS------------STMIQFSIGGNQISG-TIP---PGIRNL 209 (367)
Q Consensus 146 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------~~L~~l~l~~~~~~~-~~~---~~l~~~ 209 (367)
.+.. .++..+..+++|++|++++|.+....+..+.... ++|+.|++++|.++. ..+ ..+..+
T Consensus 109 ~~~~--~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 109 TAQE--PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTHH--HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHH--HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 3221 1334556778888888888887644333333321 459999999999873 233 467788
Q ss_pred CCCcEEEccCCccccc-----ccccccCccCCcEEEccCcccc----ccCCccccCCCCCCeEEccCCeeccc----cCc
Q 048828 210 VNLVALTMDSNQLHGT-----IPDVIGELKNLQVLFLFRNFLQ----GSIPPSLGNLTKLADLALSFNNLQGN----IPS 276 (367)
Q Consensus 210 ~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~~~i~----~~~~~~l~~~~~L~~L~l~~n~i~~~----~~~ 276 (367)
++|++|++++|.+++. .+..+..+++|+.|+|++|.++ ..++..+..+++|+.|++++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 9999999999998742 3336778899999999999996 35667788899999999999999864 345
Q ss_pred ccc--cCCCCcEEEcCCCcccC----Ccchhhhh-hcccceeEeccCCeeeeccC
Q 048828 277 SLG--NCQNLISFRASHNKLTG----ALPYQLLS-ITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 277 ~~~--~~~~L~~L~l~~n~i~~----~~~~~~~~-~~~ll~~L~l~~n~i~~~~p 324 (367)
.+. .+++|+.|++++|.+++ .+|..+.. ++.+ ++|++++|++++..|
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L-~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL-LFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC-CEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc-eEEEccCCcCCcchh
Confidence 553 38999999999999996 48887744 5777 999999999986553
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.2e-23 Score=187.35 Aligned_cols=235 Identities=14% Similarity=0.129 Sum_probs=137.4
Q ss_pred CCccEEEccCCcceeeCcccccCCCCCcEEeCCCCccccc-ccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCC
Q 048828 83 PNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGK-VSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCS 161 (367)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (367)
++++.|+++++.+....+. +..+++|++|++++|.+... .+..+..+++|++|++++|.++... ...+..++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~------~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI------VNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH------HHHHTTCT
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHH------HHHHhcCC
Confidence 4455555555544432222 33445555555555554432 3334445555555555555433211 12334455
Q ss_pred CCcEEEcccC-ccccc-cChhhhhhcccceEEEecCC-ccccc-CCccccCCC-CCcEEEccCC--ccc-ccccccccCc
Q 048828 162 SLKSLSLYDN-QFGGE-LPHSIANLSSTMIQFSIGGN-QISGT-IPPGIRNLV-NLVALTMDSN--QLH-GTIPDVIGEL 233 (367)
Q Consensus 162 ~L~~L~l~~~-~~~~~-~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~ 233 (367)
+|++|++++| .+.+. ++..+..++ +|+.|++++| .++.. .+..+..++ +|++|++++| .++ +..+..+..+
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 5555555555 33321 222223332 3666666666 55432 344566677 8888888888 444 2345566678
Q ss_pred cCCcEEEccCcc-ccccCCccccCCCCCCeEEccCCe-eccccCcccccCCCCcEEEcCCCcccCCcchhhhhhccccee
Q 048828 234 KNLQVLFLFRNF-LQGSIPPSLGNLTKLADLALSFNN-LQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLY 311 (367)
Q Consensus 234 ~~L~~L~l~~~~-i~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~ 311 (367)
++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ++... +..+...+..
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~---~~~l~~~l~~ 297 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT---LQLLKEALPH 297 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC---HHHHHHHSTT
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH---HHHHHhhCcc
Confidence 889999998888 666666677788899999999884 33333335778899999999998 54332 2233222277
Q ss_pred EeccCCeeeeccCccccC
Q 048828 312 LDLSYNLLNGSLPLQMFT 329 (367)
Q Consensus 312 L~l~~n~i~~~~p~~~~~ 329 (367)
|++++|.+++..|..+.+
T Consensus 298 L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 298 LQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SEESCCCSCCTTCSSCSS
T ss_pred eEEecccCccccCCcccc
Confidence 788999999888876665
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.4e-24 Score=190.15 Aligned_cols=256 Identities=19% Similarity=0.217 Sum_probs=183.5
Q ss_pred CCcEEEccCccccCCcchhccCC--CCcceeecccccccccCChhhhhCCCCccEEEccCCcceee-CcccccCCCCCcE
Q 048828 35 NLVYLNVAENQFSGMFPRWICNI--SSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGS-IPDSLSNASNLER 111 (367)
Q Consensus 35 ~L~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 111 (367)
.++.++++++.+. +..+..+ +.++.+++++|.+.+..+ .+ ..+++|++|++++|.+... ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-SC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-hh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4777888877664 4445555 778888888888774433 33 3678888888888877643 5666778888888
Q ss_pred EeCCCCcccccccccccCCCCCCeEEcCCC-cccCcCCCCCccccccCCCCCCcEEEcccC-ccccc-cChhhhhhcccc
Q 048828 112 LDLPGNQFKGKVSIDFSSLKNLWWLNLEQN-NLGMGTANDLDFVTSLTNCSSLKSLSLYDN-QFGGE-LPHSIANLSSTM 188 (367)
Q Consensus 112 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~L 188 (367)
|++++|.+.+..+..+..+++|++|++++| .++... ....+..+++|++|++++| .+.+. ++..+..++.+|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-----LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH-----HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH-----HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 888888877666777778888888888888 443211 2234566788888888888 77643 344455555258
Q ss_pred eEEEecCCc--cc-ccCCccccCCCCCcEEEccCCc-ccccccccccCccCCcEEEccCcc-ccccCCccccCCCCCCeE
Q 048828 189 IQFSIGGNQ--IS-GTIPPGIRNLVNLVALTMDSNQ-LHGTIPDVIGELKNLQVLFLFRNF-LQGSIPPSLGNLTKLADL 263 (367)
Q Consensus 189 ~~l~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~L~~L 263 (367)
+.|++++|. ++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 899998883 43 3445667789999999999999 676777788889999999999995 433333357789999999
Q ss_pred EccCCeeccccCcccccC-CCCcEEEcCCCcccCCcchhhhh
Q 048828 264 ALSFNNLQGNIPSSLGNC-QNLISFRASHNKLTGALPYQLLS 304 (367)
Q Consensus 264 ~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~ 304 (367)
++++| +.. ..+..+ .+++.|++++|++++..|..+..
T Consensus 278 ~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 278 QVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp ECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred eccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 99999 443 233333 34666778999999888876654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=8.1e-22 Score=166.74 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=95.9
Q ss_pred CcceeecccccccccCChhhhhCCCCccEEEccCCc-ceeeCcccccCCCCCcEEeCCC-CcccccccccccCCCCCCeE
Q 048828 59 SLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNN-FVGSIPDSLSNASNLERLDLPG-NQFKGKVSIDFSSLKNLWWL 136 (367)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L 136 (367)
+|++|++++|.+. .++...+..+++|++|++++|. ++...+..|.++++|++|++++ |.+....+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5666666666665 4444445556666666666664 5544444555566666666655 55554444445555555555
Q ss_pred EcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCC-cccccCCccccCCCCCc-E
Q 048828 137 NLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGN-QISGTIPPGIRNLVNLV-A 214 (367)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~-~ 214 (367)
++++|.++... .+..+++|+ .++.+++++| .+....+..+..+++|+ +
T Consensus 111 ~l~~n~l~~lp--------~~~~l~~L~----------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 111 GIFNTGLKMFP--------DLTKVYSTD----------------------IFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp EEEEECCCSCC--------CCTTCCBCC----------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred eCCCCCCcccc--------ccccccccc----------------------cccEEECCCCcchhhcCcccccchhcceeE
Confidence 55555443211 122222222 0113444443 33333334455555555 5
Q ss_pred EEccCCcccccccccccCccCCcEEEccCcc-ccccCCccccCC-CCCCeEEccCCeeccccCcccccCCCCcEEEcCCC
Q 048828 215 LTMDSNQLHGTIPDVIGELKNLQVLFLFRNF-LQGSIPPSLGNL-TKLADLALSFNNLQGNIPSSLGNCQNLISFRASHN 292 (367)
Q Consensus 215 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 292 (367)
|++++|.++...+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|.++. ++.. .+++|+.|+++++
T Consensus 161 L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 161 LKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred EEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 555555555222223332 455555555553 544444444444 555555555555542 2221 3445555555443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=7.5e-22 Score=166.94 Aligned_cols=198 Identities=14% Similarity=0.187 Sum_probs=161.5
Q ss_pred CCCcEEEccCccccCCcchhccCCCCcceeeccccc-ccccCChhhhhCCCCccEEEccC-CcceeeCcccccCCCCCcE
Q 048828 34 RNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNR-FSGSLPFDILVNLPNLKELGVGG-NNFVGSIPDSLSNASNLER 111 (367)
Q Consensus 34 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~ 111 (367)
++|++|++++|.++...+..|..+++|++|++++|. +. .++...|.++++|++|++++ |.++...+..|.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 379999999999987777788899999999999997 76 77776778899999999998 8888666678889999999
Q ss_pred EeCCCCcccccccccccCCCCCC---eEEcCCC-cccCcCCCCCccccccCCCCCCc-EEEcccCccccccChhhhhhcc
Q 048828 112 LDLPGNQFKGKVSIDFSSLKNLW---WLNLEQN-NLGMGTANDLDFVTSLTNCSSLK-SLSLYDNQFGGELPHSIANLSS 186 (367)
Q Consensus 112 L~l~~n~l~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~ 186 (367)
|++++|.+.+ .+. +..+++|+ +|++++| .++.... ..+..+++|+ +|++++|.+. .++...+.. .
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~------~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~ 179 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-T 179 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT------TTTTTTBSSEEEEECCSCCCC-EECTTTTTT-C
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc------ccccchhcceeEEEcCCCCCc-ccCHhhcCC-C
Confidence 9999998876 343 77888888 9999998 7764443 3467788999 9999999988 666655555 4
Q ss_pred cceEEEecCCc-ccccCCccccCC-CCCcEEEccCCcccccccccccCccCCcEEEccCcc
Q 048828 187 TMIQFSIGGNQ-ISGTIPPGIRNL-VNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNF 245 (367)
Q Consensus 187 ~L~~l~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 245 (367)
+++.+++++|+ +....+..+..+ ++|++|++++|.+++..+. .+++|+.|+++++.
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 59999999995 887778889999 9999999999999844333 56889999998763
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=175.53 Aligned_cols=231 Identities=17% Similarity=0.144 Sum_probs=163.7
Q ss_pred CCCcEEEccCccccCCc-ch--hccCCCCcceeecccccccccCChhhh-hCCCCccEEEccCCcceeeCc----ccccC
Q 048828 34 RNLVYLNVAENQFSGMF-PR--WICNISSLELIYLTVNRFSGSLPFDIL-VNLPNLKELGVGGNNFVGSIP----DSLSN 105 (367)
Q Consensus 34 ~~L~~L~l~~~~i~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~l~~ 105 (367)
..++.+.+.++.+.... .. .+..+++|++|++++|.+.+..+..++ ..+++|++|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34677777777654211 11 112345688888888888766665554 678888888888888774333 23456
Q ss_pred CCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChh---hh
Q 048828 106 ASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHS---IA 182 (367)
Q Consensus 106 l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~ 182 (367)
+++|++|++++|.+....+..+..+++|++|++++|++..... +.....+..+++|++|++++|.+. .++.. +.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~ 220 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--LMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA 220 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--HHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--hhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH
Confidence 8888888888888877777778888888888888887542100 001122356788888999988886 33332 22
Q ss_pred hhcccceEEEecCCcccccCCccccCC---CCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCC
Q 048828 183 NLSSTMIQFSIGGNQISGTIPPGIRNL---VNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTK 259 (367)
Q Consensus 183 ~~~~~L~~l~l~~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 259 (367)
....+|+.|++++|.+.+..|..+..+ ++|++|++++|.++ ..|..+. ++|+.|++++|++++. |. +..+++
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 233459999999999987767666666 69999999999998 5566553 7999999999999854 33 577899
Q ss_pred CCeEEccCCeecc
Q 048828 260 LADLALSFNNLQG 272 (367)
Q Consensus 260 L~~L~l~~n~i~~ 272 (367)
|+.|++++|.++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999998873
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.4e-21 Score=169.96 Aligned_cols=193 Identities=24% Similarity=0.350 Sum_probs=114.2
Q ss_pred cCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCC
Q 048828 55 CNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLW 134 (367)
Q Consensus 55 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 134 (367)
..+++|++|+++++.+. .++ . +..+++|++|++++|.+.. ++. +..+++|++|++++|.+... ..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 34667777777777776 444 2 4567777777777777763 333 67777777777777776643 2466777777
Q ss_pred eEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcE
Q 048828 135 WLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVA 214 (367)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 214 (367)
+|++++|.++.. ..+..+++|++|++++|.+.+ .+. +..+. +|+.|++++|.+.+..+ +..+++|++
T Consensus 111 ~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 111 TLDLTSTQITDV--------TPLAGLSNLQVLYLDLNQITN-ISP-LAGLT-NLQYLSIGNAQVSDLTP--LANLSKLTT 177 (308)
T ss_dssp EEECTTSCCCCC--------GGGTTCTTCCEEECCSSCCCC-CGG-GGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EEECCCCCCCCc--------hhhcCCCCCCEEECCCCccCc-Ccc-ccCCC-CccEEEccCCcCCCChh--hcCCCCCCE
Confidence 777777766432 235566777777777776653 222 33332 36666666665553222 555566666
Q ss_pred EEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeec
Q 048828 215 LTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 215 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~ 271 (367)
|++++|.+++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|.++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 6666666553322 445556666666666655332 2455566666666666555
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=1.2e-23 Score=201.53 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=65.3
Q ss_pred hccCCCCcEEEccCcccCCCCccccC-CCCCCcEEEccCc-cccCC-cchhccCCCCcceeecccccccccCCh---hhh
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLG-LLRNLVYLNVAEN-QFSGM-FPRWICNISSLELIYLTVNRFSGSLPF---DIL 79 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~ 79 (367)
...+++|++|++++|.+.+.....+. .+++|++|++++| .+... ++..+.++++|++|++++|.+.+..+. .+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34677888888888777655444443 5777888888777 34321 334444677777777777776532221 122
Q ss_pred hCCCCccEEEccCCc--cee-eCcccccCCCCCcEEeCCCC
Q 048828 80 VNLPNLKELGVGGNN--FVG-SIPDSLSNASNLERLDLPGN 117 (367)
Q Consensus 80 ~~~~~L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~l~~n 117 (367)
..+++|++|++++|. +.. .+.....++++|++|++++|
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 345677777777665 110 11112234566666666665
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=9.7e-21 Score=166.16 Aligned_cols=210 Identities=23% Similarity=0.304 Sum_probs=148.2
Q ss_pred cceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcC
Q 048828 60 LELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLE 139 (367)
Q Consensus 60 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 139 (367)
+..+.+..+.+.+.+. .+.+++|++|++++|.+.. ++ .+..+++|++|++++|.+....+ +..+++|++|+++
T Consensus 21 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS 93 (308)
T ss_dssp HHHHHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred HHHHHhCCCCcCceec---HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEcc
Confidence 3334455555542222 2467899999999998873 44 58889999999999999886554 8899999999999
Q ss_pred CCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccC
Q 048828 140 QNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDS 219 (367)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 219 (367)
+|.++.. ..+..+++|++|++++|.+.+ ++. +..+. +|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 94 ~n~l~~~--------~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 94 GNPLKNV--------SAIAGLQSIKTLDLTSTQITD-VTP-LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160 (308)
T ss_dssp SCCCSCC--------GGGTTCTTCCEEECTTSCCCC-CGG-GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CCcCCCc--------hhhcCCCCCCEEECCCCCCCC-chh-hcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccC
Confidence 9987532 357778899999999988873 332 33333 47777777777764433 66777777777777
Q ss_pred CcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 220 NQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 220 n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|+++
T Consensus 161 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 161 AQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 77764333 6667777777777777764432 566677777777777776433 3666777777777777776
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=4.7e-24 Score=204.46 Aligned_cols=318 Identities=13% Similarity=0.058 Sum_probs=168.9
Q ss_pred hhccCCCCcEEEccCcccCC---CCc------------cccCCCCCCcEEEccCccccCCcchhcc-CCCCcceeecccc
Q 048828 5 FIGNLSALGILLIRWNSLGG---QIP------------TTLGLLRNLVYLNVAENQFSGMFPRWIC-NISSLELIYLTVN 68 (367)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~---~~~------------~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~ 68 (367)
.+..+++|++|+++++.... ..+ .....+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 35677888888888764221 111 1124577888888888887655555554 5788888888887
Q ss_pred -cccccCChhhhhCCCCccEEEccCCcceeeCccc----ccCCCCCcEEeCCCCc--cccc-ccccccCCCCCCeEEcCC
Q 048828 69 -RFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDS----LSNASNLERLDLPGNQ--FKGK-VSIDFSSLKNLWWLNLEQ 140 (367)
Q Consensus 69 -~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~n~--l~~~-~~~~l~~~~~L~~L~l~~ 140 (367)
.+.+.....+...+++|++|++++|.++...+.. ...+++|++|++++|. +... .......+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 4432223344457888888888888766433332 3367788888888875 2211 111124467777777776
Q ss_pred Cc-cc-------------CcC----------------------------------CCCCccccccCCCCCCcEEEcccCc
Q 048828 141 NN-LG-------------MGT----------------------------------ANDLDFVTSLTNCSSLKSLSLYDNQ 172 (367)
Q Consensus 141 ~~-~~-------------~~~----------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (367)
|. +. ... ...-.+...+..+++|++|++++|.
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence 61 00 000 0000000111134566666666665
Q ss_pred cccccChhhhhhcccceEEEecCCccccc-CCcccc----------------------------------CCCCCcEEEc
Q 048828 173 FGGELPHSIANLSSTMIQFSIGGNQISGT-IPPGIR----------------------------------NLVNLVALTM 217 (367)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~----------------------------------~~~~L~~L~l 217 (367)
+.+.....+....++|+.|++.+| +... .+.... .+++|++|.+
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 442222221212223555554444 1110 111111 2444555544
Q ss_pred cCCccccccccccc-CccCCcEEEcc--C----ccccccC-----CccccCCCCCCeEEccCCeeccccCccccc-CCCC
Q 048828 218 DSNQLHGTIPDVIG-ELKNLQVLFLF--R----NFLQGSI-----PPSLGNLTKLADLALSFNNLQGNIPSSLGN-CQNL 284 (367)
Q Consensus 218 ~~n~~~~~~~~~~~-~~~~L~~L~l~--~----~~i~~~~-----~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L 284 (367)
..+.+++.....+. .+++|+.|+++ + +.+++.. +..+..+++|+.|++++ .+++.....+.. +++|
T Consensus 380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 44444433222222 35666677666 2 3333111 11134556777777766 444433344444 7788
Q ss_pred cEEEcCCCcccCCcchhh-hhhcccceeEeccCCeeeeccCc
Q 048828 285 ISFRASHNKLTGALPYQL-LSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 285 ~~L~l~~n~i~~~~~~~~-~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
+.|++++|.+++..+..+ ..++.+ ++|++++|++++..+.
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L-~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSL-RKLEIRDCPFGDKALL 499 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTC-CEEEEESCSCCHHHHH
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCc-CEEECcCCCCcHHHHH
Confidence 888888888875555554 345556 8888888888644333
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.5e-20 Score=157.81 Aligned_cols=181 Identities=27% Similarity=0.341 Sum_probs=127.8
Q ss_pred CCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCC
Q 048828 83 PNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSS 162 (367)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (367)
...++++++++.+. .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.++.... ..+..+++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA------GVFDDLTE 84 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------TTTTTCTT
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH------hHhccCCc
Confidence 34566777777666 4555443 467777777777776666666666777777776666543322 22344455
Q ss_pred CcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEcc
Q 048828 163 LKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLF 242 (367)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 242 (367)
|++|++++| .+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 85 L~~L~L~~n-------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 85 LGTLGLANN-------------------------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp CCEEECTTS-------------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCC-------------------------cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 555555544 4444455566777888888888888886666667778888888888
Q ss_pred CccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCC
Q 048828 243 RNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGA 297 (367)
Q Consensus 243 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 297 (367)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888866666788888899999999888876666788888999999999988754
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.6e-20 Score=167.82 Aligned_cols=247 Identities=20% Similarity=0.219 Sum_probs=172.5
Q ss_pred hccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
+..|.. ++++-+++.++ .+|..+ .+++++|++++|.|+.+.+.+|.++++|++|++++|.+.+.++...|.+++++
T Consensus 6 ~C~C~~-~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp SSEEET-TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred ccEeeC-CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 344443 56777777777 455555 25789999999999866667888999999999999988657787778888887
Q ss_pred cE-EEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCC-CcccCcCCCCCccccccCCC-CC
Q 048828 86 KE-LGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQ-NNLGMGTANDLDFVTSLTNC-SS 162 (367)
Q Consensus 86 ~~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~-~~ 162 (367)
++ +.+.+|.+....++.|..+++|++|++++|.+....+..+....++..+++.+ +.+..... ..+..+ ..
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~------~~f~~~~~~ 155 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER------NSFVGLSFE 155 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT------TSSTTSBSS
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc------cchhhcchh
Confidence 76 45566788867778888999999999999988866666666667777787755 34433322 122333 35
Q ss_pred CcEEEcccCccccccChhhhhhcccceEEEecC-CcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEc
Q 048828 163 LKSLSLYDNQFGGELPHSIANLSSTMIQFSIGG-NQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFL 241 (367)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 241 (367)
++.|++++|.+. .++...+.... ++.+.+.+ |.++...+.+|..+++|++|++++|+++...+.. +.+|+.|.+
T Consensus 156 l~~L~L~~N~i~-~i~~~~f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~ 230 (350)
T 4ay9_X 156 SVILWLNKNGIQ-EIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRA 230 (350)
T ss_dssp CEEEECCSSCCC-EECTTSSTTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEEC
T ss_pred hhhhcccccccc-CCChhhccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhh
Confidence 778888888887 55555555444 78888864 5666555567788888888888888887443333 456666666
Q ss_pred cCccccccCCccccCCCCCCeEEccCC
Q 048828 242 FRNFLQGSIPPSLGNLTKLADLALSFN 268 (367)
Q Consensus 242 ~~~~i~~~~~~~l~~~~~L~~L~l~~n 268 (367)
.++.-....| .+..+++|+.+++.++
T Consensus 231 l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 231 RSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5554332444 3667788888888764
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=169.24 Aligned_cols=231 Identities=17% Similarity=0.151 Sum_probs=179.0
Q ss_pred CCCCcEEEccCcccCCCCcc---ccCCCCCCcEEEccCccccCCcchhc--cCCCCcceeecccccccccCC---hhhhh
Q 048828 9 LSALGILLIRWNSLGGQIPT---TLGLLRNLVYLNVAENQFSGMFPRWI--CNISSLELIYLTVNRFSGSLP---FDILV 80 (367)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~---~~~~~ 80 (367)
...++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34578888888776532111 11234679999999999998888887 889999999999999985433 12234
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCccccc--c--cccccCCCCCCeEEcCCCcccCcCCCCCcccc-
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGK--V--SIDFSSLKNLWWLNLEQNNLGMGTANDLDFVT- 155 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~- 155 (367)
.+++|++|++++|.+....+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|+++.... ...
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~ 218 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG----VCAA 218 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH----HHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH----HHHH
Confidence 789999999999999877778899999999999999987642 1 2234788999999999998853221 111
Q ss_pred ccCCCCCCcEEEcccCccccccChhhhhhc--ccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCc
Q 048828 156 SLTNCSSLKSLSLYDNQFGGELPHSIANLS--STMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGEL 233 (367)
Q Consensus 156 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 233 (367)
.+..+++|++|++++|.+.+..|..+..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.+++. +. +..+
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l 293 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDEL 293 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhC
Confidence 245779999999999999976677666653 56999999999999 5566553 7999999999999854 33 5778
Q ss_pred cCCcEEEccCccccc
Q 048828 234 KNLQVLFLFRNFLQG 248 (367)
Q Consensus 234 ~~L~~L~l~~~~i~~ 248 (367)
++|+.|++++|++++
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 999999999999874
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.8e-20 Score=158.39 Aligned_cols=160 Identities=23% Similarity=0.221 Sum_probs=131.5
Q ss_pred CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEE
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLF 240 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 240 (367)
+.++.|++++|.+.+..+..+..+. +|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 3556666666665544343444443 377777777777766777788999999999999999977778889999999999
Q ss_pred ccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeee
Q 048828 241 LFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLN 320 (367)
Q Consensus 241 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 320 (367)
+++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..++.+ ++|++++|+++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~ 192 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL-QTITLFGNQFD 192 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSCCBC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC-CEEEeeCCcee
Confidence 99999997777778899999999999999997766789999999999999999997666678788888 99999999998
Q ss_pred ec
Q 048828 321 GS 322 (367)
Q Consensus 321 ~~ 322 (367)
+.
T Consensus 193 c~ 194 (251)
T 3m19_A 193 CS 194 (251)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.6e-20 Score=164.37 Aligned_cols=241 Identities=16% Similarity=0.137 Sum_probs=180.8
Q ss_pred cEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCc-ccccCCCCCcE-EeC
Q 048828 37 VYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIP-DSLSNASNLER-LDL 114 (367)
Q Consensus 37 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l 114 (367)
++++.+++.++ .+|..+ .+++++|++++|.++ .++...|+++++|++|++++|.+...++ .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888998888 566555 368999999999998 8998888999999999999999764444 56888988876 555
Q ss_pred CCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccC-ccccccChhhhhhcccceEEEe
Q 048828 115 PGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDN-QFGGELPHSIANLSSTMIQFSI 193 (367)
Q Consensus 115 ~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l 193 (367)
.+|.+....+..|..+++|++|++++|.+..... ..+.....+..+++.++ .+....+..+......++.|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCc------hhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 6788988888889999999999999998865443 23344566778888664 4553333445555556889999
Q ss_pred cCCcccccCCccccCCCCCcEEEccC-CcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeecc
Q 048828 194 GGNQISGTIPPGIRNLVNLVALTMDS-NQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQG 272 (367)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~ 272 (367)
++|.+....+.++ ...+++++++.+ |.++...+..|..+++|+.|++++|+++...+..+ .+|+.|.+.++....
T Consensus 162 ~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 162 NKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK 237 (350)
T ss_dssp CSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC
T ss_pred ccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC
Confidence 9999986555554 456899999975 66664555678889999999999999985544444 566677666654443
Q ss_pred ccCcccccCCCCcEEEcCCC
Q 048828 273 NIPSSLGNCQNLISFRASHN 292 (367)
Q Consensus 273 ~~~~~~~~~~~L~~L~l~~n 292 (367)
.+| .+..+++|+.+++.++
T Consensus 238 ~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCC-CTTTCCSCCEEECSCH
T ss_pred cCC-CchhCcChhhCcCCCC
Confidence 455 4777889999998753
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.6e-19 Score=149.26 Aligned_cols=181 Identities=22% Similarity=0.241 Sum_probs=116.6
Q ss_pred cEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccC
Q 048828 13 GILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (367)
+.++.+++.+.. +|..+ .++|++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 455666655552 33322 346777777777777655666677777777777777776 66666666777777777777
Q ss_pred CcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCc
Q 048828 93 NNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQ 172 (367)
Q Consensus 93 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (367)
|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.... ..+..+++|+.|++++|.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH------HHhccCCCccEEEecCCC
Confidence 77764444556777777777777777776655556777777777777776654332 235566777777777776
Q ss_pred cccccChhhhhhcccceEEEecCCcccccCCccccCCCC
Q 048828 173 FGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVN 211 (367)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~ 211 (367)
+....+ .++.+++..|.+.+..|..+..++.
T Consensus 160 ~~~~~~--------~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 160 WDCTCP--------GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp BCCCTT--------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred eecCCC--------CHHHHHHHHHhCCceeeccCccccC
Confidence 653322 2666666666666666666555443
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.4e-19 Score=148.38 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=125.0
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccC
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 243 (367)
+.++.+++.+. .+|..+ +..++.|++++|.+....+..+..+++|++|++++|.+++..+..|.++++|+.|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45677777666 555533 24588888888888877777888888888888888888877777888888888888888
Q ss_pred ccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeecc
Q 048828 244 NFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSL 323 (367)
Q Consensus 244 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~ 323 (367)
|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..++.+ ++|++++|++.+++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI-QTMHLAQNPFICDC 168 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCEECSG
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC-CEEEeCCCCcCCCC
Confidence 88886666667788888888888888887777788888888888888888886666667777777 88888888888776
Q ss_pred Ccccc
Q 048828 324 PLQMF 328 (367)
Q Consensus 324 p~~~~ 328 (367)
...|+
T Consensus 169 ~l~~l 173 (220)
T 2v9t_B 169 HLKWL 173 (220)
T ss_dssp GGHHH
T ss_pred ccHHH
Confidence 65444
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=148.64 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=101.0
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCC-ccccCCCCCcEEEccCCcccccccccccCccCCcEEEcc
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIP-PGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLF 242 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 242 (367)
+.++++++.+. .+|..+ +..++.|++++|.+....+ ..+..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35666666555 344432 2235666666666665433 345666777777777777665555566666777777777
Q ss_pred CccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeec
Q 048828 243 RNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGS 322 (367)
Q Consensus 243 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~ 322 (367)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..+..++.+ ++|++++|++.|+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL-STLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC-CEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC-CEEEecCcCCcCC
Confidence 777765555566666777777777777766556666667777777777777765556666666666 7777777777666
Q ss_pred cCccc
Q 048828 323 LPLQM 327 (367)
Q Consensus 323 ~p~~~ 327 (367)
++..+
T Consensus 169 c~l~~ 173 (220)
T 2v70_A 169 CYLAW 173 (220)
T ss_dssp GGGHH
T ss_pred CchHH
Confidence 65433
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=9.2e-19 Score=144.63 Aligned_cols=163 Identities=23% Similarity=0.219 Sum_probs=111.7
Q ss_pred CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEE
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLF 240 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 240 (367)
+++++|++++|.+.+..+..+..+ .+|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 345555555555552222222222 2366666666666655555667778888888888888755556677788888888
Q ss_pred ccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeee
Q 048828 241 LFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLN 320 (367)
Q Consensus 241 l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 320 (367)
+++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..| .+ ++|++++|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l-~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GI-RYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-------TT-HHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC-------CH-HHHHHHHHhCC
Confidence 88888886666667778888888888888876555567778888888888887764332 34 77788888888
Q ss_pred eccCccccCCCC
Q 048828 321 GSLPLQMFTGRR 332 (367)
Q Consensus 321 ~~~p~~~~~~~~ 332 (367)
|.+|.++.....
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 888887776544
No 101
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.1e-19 Score=160.94 Aligned_cols=289 Identities=13% Similarity=0.064 Sum_probs=153.2
Q ss_pred CCCCcEEEccCcccCCCCccccCC-CCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhC------
Q 048828 9 LSALGILLIRWNSLGGQIPTTLGL-LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVN------ 81 (367)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------ 81 (367)
+++++.|.++++- .......+.. +++|+.||+++|.+... ...-..++.++.+.+..+ .++...|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTT----EECTTTTEEEETTEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEe-cCcccccccccccccccc----ccCHHHhcccccccc
Confidence 5677888887642 1111122333 77899999999887611 111112222344444444 455666777
Q ss_pred --CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCC
Q 048828 82 --LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTN 159 (367)
Q Consensus 82 --~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 159 (367)
+++|+.|++.. .++.+...+|.+|++|+.+++.+|.+..+.+.+|..+.++.++......... ....+ ....+..
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~-~~~~i-~~~~f~~ 174 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR-FKNRW-EHFAFIE 174 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH-TSTTT-TTSCEEE
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh-ccccc-ccccccc
Confidence 89999999988 7776667788889999999999888877777788887777776665422100 00000 0123344
Q ss_pred CCCCc-EEEcccCccccccChhhhhh---cccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccC
Q 048828 160 CSSLK-SLSLYDNQFGGELPHSIANL---SSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKN 235 (367)
Q Consensus 160 ~~~L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 235 (367)
|..|+ .+.+.... .++..+... +.++..+.+.+.-...........+++|+++++++|.++......|.++++
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 55555 34443211 122222111 122344444332111001111112556666666665555444455556666
Q ss_pred CcEEEccCccccccCCccccCCCCCC-eEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeE
Q 048828 236 LQVLFLFRNFLQGSIPPSLGNLTKLA-DLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYL 312 (367)
Q Consensus 236 L~~L~l~~~~i~~~~~~~l~~~~~L~-~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L 312 (367)
|+.+++.+| ++.....+|..+++|+ .+++.+ .++...+.+|..|++|+.+++++|.++..-+.+|..++.+ +.+
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L-~~l 326 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS-KLI 326 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC-CEE
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch-hhh
Confidence 666666655 4444455555666666 666655 4444444556666666666666665553333344444444 444
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.4e-18 Score=144.59 Aligned_cols=152 Identities=24% Similarity=0.255 Sum_probs=119.2
Q ss_pred cEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccC
Q 048828 13 GILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (367)
+.++.+++.+. .+|..+. ++|+.|++++|.+....+..|..+++|++|++++|.+. .+....|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC
Confidence 56778877776 3454443 57888888888888766778888888888999888887 55555567888899999988
Q ss_pred CcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCc
Q 048828 93 NNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQ 172 (367)
Q Consensus 93 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 172 (367)
|.++...+..|.++++|++|++++|.+....+..+..+++|++|++++|.++.... ..+..+++|+.|++++|.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK------GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH------HHHhCCCCCCEEEeCCCC
Confidence 88885555567888889999998888888777888888889999998888875543 345667888899998888
Q ss_pred cc
Q 048828 173 FG 174 (367)
Q Consensus 173 ~~ 174 (367)
+.
T Consensus 164 ~~ 165 (220)
T 2v9t_B 164 FI 165 (220)
T ss_dssp EE
T ss_pred cC
Confidence 76
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=4.2e-18 Score=142.71 Aligned_cols=134 Identities=24% Similarity=0.219 Sum_probs=66.0
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
++.|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC
Confidence 55555555555544444455555555555555555433334444455555555555555544444444555555555555
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeecc
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSL 323 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~ 323 (367)
|.+. .+|..+..+++|+.|++++|++++..+..+..++.+ ++|++++|++.|.+
T Consensus 122 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL-THAYLFGNPWDCEC 175 (229)
T ss_dssp SCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECTTSCBCTTB
T ss_pred Cccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC-CEEEeeCCCccCCc
Confidence 5555 344444555555555555555553333334444444 55555555554443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=8.1e-18 Score=158.33 Aligned_cols=188 Identities=23% Similarity=0.324 Sum_probs=150.8
Q ss_pred CccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCC
Q 048828 84 NLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSL 163 (367)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 163 (367)
+++.|++++|.++. +|..+ .++|++|++++|.+.. +| ..+++|++|++++|.++... . +.. +|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip-------~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLP-------E-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCC-------C-CCT--TC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcc-------h-hhc--CC
Confidence 89999999999884 67655 3789999999999984 44 55799999999999886422 1 222 89
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccC
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 243 (367)
+.|++++|.+.+ +|. ...+|+.|++++|.+++ +|. .+++|++|++++|.+++ .|. +. ++|+.|++++
T Consensus 123 ~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 123 KHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 999999999884 665 34569999999999886 444 57899999999999985 555 54 8999999999
Q ss_pred ccccccCCccccCCCCC-------CeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhc
Q 048828 244 NFLQGSIPPSLGNLTKL-------ADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSIT 306 (367)
Q Consensus 244 ~~i~~~~~~~l~~~~~L-------~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 306 (367)
|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9998 5555 543 67 99999999999 5777777899999999999999988888887764
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.2e-17 Score=157.06 Aligned_cols=187 Identities=25% Similarity=0.336 Sum_probs=128.7
Q ss_pred CcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEc
Q 048828 59 SLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNL 138 (367)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 138 (367)
+++.|++++|.+. .+|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+.+ ++. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 7888888888777 466654 367888888888777 455 346788888888887775 444 443 7888888
Q ss_pred CCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEcc
Q 048828 139 EQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMD 218 (367)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 218 (367)
++|.++... . .+++|+.|++++|.+.+ +|. ...+|+.|++++|.+++ +|. +. ++|+.|+++
T Consensus 128 s~N~l~~lp-------~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 128 DNNQLTMLP-------E---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp CSSCCSCCC-------C---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCcCCCCC-------C---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 888775421 1 46778888888888773 554 33458888888888775 444 44 778888888
Q ss_pred CCcccccccccccCccCC-------cEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccC
Q 048828 219 SNQLHGTIPDVIGELKNL-------QVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNC 281 (367)
Q Consensus 219 ~n~~~~~~~~~~~~~~~L-------~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~ 281 (367)
+|.++ ..|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 88877 4444 433 56 88888888887 456656667888888888888877666665543
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.9e-18 Score=162.11 Aligned_cols=189 Identities=25% Similarity=0.328 Sum_probs=99.8
Q ss_pred CcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCC
Q 048828 36 LVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLP 115 (367)
Q Consensus 36 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 115 (367)
+..+.+..+.+....+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+... +. +..+++|+.|+++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECc
Confidence 3334444444442222 344566666666666665 4432 35566666666666666532 22 5566666666666
Q ss_pred CCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecC
Q 048828 116 GNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGG 195 (367)
Q Consensus 116 ~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 195 (367)
+|.+... ..+..+++|++|+|++|.+... ..+..+++|+.|++++|.+.
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~--------------------- 144 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKIT--------------------- 144 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCC---------------------
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCCC--------ccccCCCccCEEECCCCccC---------------------
Confidence 6665532 2455566666666666655321 23444555555555555544
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeecc
Q 048828 196 NQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQG 272 (367)
Q Consensus 196 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~ 272 (367)
+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+
T Consensus 145 ----~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 145 ----DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ----CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred ----Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 22 334455555555555555554333 45555566666666555532 234555556666666655553
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=7.5e-18 Score=151.16 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=67.4
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
|+.|++++|.+....+..|..+++|++|++++|.++...+..|..+++|+.|+|++|++++..+..|..+++|+.|++++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 44444444444444444455555555555555555544444455555555555555555544455555555555555555
Q ss_pred CeeccccCccc---ccCCCCcEEEcCCCcccCCcchhhhhhccc-ceeEeccCCeeeecc
Q 048828 268 NNLQGNIPSSL---GNCQNLISFRASHNKLTGALPYQLLSITTL-SLYLDLSYNLLNGSL 323 (367)
Q Consensus 268 n~i~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~~~~~~~~l-l~~L~l~~n~i~~~~ 323 (367)
|.+....+..+ ..+++|+.|+|++|++++..+..+..++.+ ++.|++++|++.|++
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 55553222222 345555555555555553333333333321 245555555555443
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5.9e-18 Score=147.13 Aligned_cols=170 Identities=26% Similarity=0.423 Sum_probs=82.8
Q ss_pred CCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCC
Q 048828 82 LPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCS 161 (367)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (367)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. ..+..++
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--------~~l~~l~ 112 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--------SSLKDLK 112 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--------GGGTTCT
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--------hhhccCC
Confidence 4445555555554442 22 24445555555555555443322 44455555555555544321 1244445
Q ss_pred CCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEc
Q 048828 162 SLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFL 241 (367)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 241 (367)
+|++|++++|.+.+ + ..+..++ +|+.|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 113 ~L~~L~L~~n~i~~-~-~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCC-C-hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 55555555554442 1 1222222 244444444444432 335555666666666666654333 555666666666
Q ss_pred cCccccccCCccccCCCCCCeEEccCCeecc
Q 048828 242 FRNFLQGSIPPSLGNLTKLADLALSFNNLQG 272 (367)
Q Consensus 242 ~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~ 272 (367)
++|.+++. + .+..+++|+.|++++|.+..
T Consensus 186 ~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 66666532 2 25556666666666666553
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1e-17 Score=140.35 Aligned_cols=154 Identities=22% Similarity=0.288 Sum_probs=129.7
Q ss_pred CcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEcc
Q 048828 12 LGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVG 91 (367)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (367)
-+.++.+++.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 467888888777 4555443 78999999999999888889999999999999999997 8887878899999999999
Q ss_pred CCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccC
Q 048828 92 GNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDN 171 (367)
Q Consensus 92 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (367)
+|.++...+..+..+++|++|++++|.+. ..|..+..+++|++|++++|.++.... ..+..+++|+.|++.+|
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH------GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT------TTTTTCTTCCEEECTTS
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH------HHHhCCCCCCEEEeeCC
Confidence 99998666667889999999999999998 557778899999999999998875443 35677899999999999
Q ss_pred ccccc
Q 048828 172 QFGGE 176 (367)
Q Consensus 172 ~~~~~ 176 (367)
.+...
T Consensus 170 ~~~c~ 174 (229)
T 3e6j_A 170 PWDCE 174 (229)
T ss_dssp CBCTT
T ss_pred CccCC
Confidence 88743
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.1e-18 Score=146.59 Aligned_cols=171 Identities=29% Similarity=0.387 Sum_probs=96.7
Q ss_pred CCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCe
Q 048828 56 NISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWW 135 (367)
Q Consensus 56 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 135 (367)
.+++|+.|++++|.+. .++. +..+++|++|++++|.+.. ++. +.++++|++|++++|.+... ..+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3445555555555544 3321 3445555555555555542 222 55555555555555555432 12555555555
Q ss_pred EEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEE
Q 048828 136 LNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVAL 215 (367)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 215 (367)
|++++|.++.. ..+..+++|+.|++++|.+.+ + ..+..+. +|+.|++++|.+.+..+ +..+++|++|
T Consensus 117 L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 117 LSLEHNGISDI--------NGLVHLPQLESLYLGNNKITD-I-TVLSRLT-KLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp EECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCC-C-GGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCc-c-hhhccCC-CCCEEEccCCccccchh--hcCCCccCEE
Confidence 55555554321 234455566666666665552 2 2333333 36666666666664433 6778888888
Q ss_pred EccCCcccccccccccCccCCcEEEccCccccc
Q 048828 216 TMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQG 248 (367)
Q Consensus 216 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 248 (367)
++++|.+++. + .+..+++|+.|++++|.++.
T Consensus 184 ~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 8888888743 3 36778888888888888874
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.2e-18 Score=154.41 Aligned_cols=282 Identities=13% Similarity=0.078 Sum_probs=189.0
Q ss_pred CCCCcEEEccCccccCCcchhccC-CCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccC------
Q 048828 33 LRNLVYLNVAENQFSGMFPRWICN-ISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSN------ 105 (367)
Q Consensus 33 ~~~L~~L~l~~~~i~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------ 105 (367)
+.+++.|.++++- .......+.. +++|+.|++++|.+. ..... ...++.++.+.+..+. +...+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~-~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIK-MYSGK-AGTYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEEC-CEEES-SSSSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeE-EecCc-cccccccccccccccc---cCHHHhcccccccc
Confidence 5679999998752 2122223444 788999999999886 11111 1123334555555553 33456777
Q ss_pred --CCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCcc----ccccCh
Q 048828 106 --ASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQF----GGELPH 179 (367)
Q Consensus 106 --l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~ 179 (367)
+++|+++++.. .+..+...+|..+++|+++++..+.+..... ..+..+.++..+....... ......
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~------~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP------EALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECT------TSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccch------hhhcCCCceEEecCcchhhhhcccccccc
Confidence 99999999999 8888888899999999999999998765554 3556677777666654322 101112
Q ss_pred hhhhhcccce-EEEecCCcc-cccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCC
Q 048828 180 SIANLSSTMI-QFSIGGNQI-SGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNL 257 (367)
Q Consensus 180 ~~~~~~~~L~-~l~l~~~~~-~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 257 (367)
.+..+. .++ .+.+..... .......-....+++.+.+.++-...........+++|+.+++++|.++.....+|..+
T Consensus 171 ~f~~~~-~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 171 AFIEGE-PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp CEEESC-CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred cccccc-ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 222232 244 444443211 10111111235677888887764332222222347999999999999997788899999
Q ss_pred CCCCeEEccCCeeccccCcccccCCCCc-EEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccCCCC
Q 048828 258 TKLADLALSFNNLQGNIPSSLGNCQNLI-SFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFTGRR 332 (367)
Q Consensus 258 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~~~~ 332 (367)
++|+.+++.+| ++.....+|..|++|+ .+.+.+ .++..-+.+|..+..+ +.+++++|.++ .++...|....
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L-~~l~l~~n~i~-~I~~~aF~~~~ 321 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL-RYVLATGDKIT-TLGDELFGNGV 321 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE-EEEEECSSCCC-EECTTTTCTTC
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC-CEEEeCCCccC-ccchhhhcCCc
Confidence 99999999998 7767788899999999 999998 6764456778788888 99999999998 67776665443
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.2e-17 Score=158.85 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=147.4
Q ss_pred CCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEc
Q 048828 11 ALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGV 90 (367)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 90 (367)
.+..+.+..+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .++. +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEEC
Confidence 3444556666655332 24578899999999999974 33 5888999999999999998 5554 678999999999
Q ss_pred cCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEccc
Q 048828 91 GGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYD 170 (367)
Q Consensus 91 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 170 (367)
++|.+.. ++ .+..+++|++|++++|.+... ..+..+++|++|+|++|.+... ..+..+++|+.|++++
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECCS
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECcC
Confidence 9999873 34 689999999999999999864 4588999999999999988642 4677889999999999
Q ss_pred CccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCccccc
Q 048828 171 NQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGT 225 (367)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 225 (367)
|.+.+..+ +..++ +|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 163 N~l~~~~~--l~~l~-~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 163 NQISDIVP--LAGLT-KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCCCCCGG--GTTCT-TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CcCCCchh--hccCC-CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 98874433 44443 477888887777643 3467777777777777777643
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=7.4e-17 Score=134.20 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=110.1
Q ss_pred CCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEc
Q 048828 162 SLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFL 241 (367)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 241 (367)
.+++|++++|.+.+..+........+|+.|++++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34566666666653323322222234777777777777667778889999999999999998777778889999999999
Q ss_pred cCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcch
Q 048828 242 FRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPY 300 (367)
Q Consensus 242 ~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 300 (367)
++|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999988888899999999999999999987788899999999999999999865553
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.5e-17 Score=135.98 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=58.9
Q ss_pred cccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCe-eccccCcccccCCC
Q 048828 205 GIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNN-LQGNIPSSLGNCQN 283 (367)
Q Consensus 205 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~~~~~~~ 283 (367)
.+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|. ++ ..+ .+..+++
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~ 160 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPE 160 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSS
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCC
Confidence 34455555555555555554445555555556666666665554444555555566666666655 43 222 4555566
Q ss_pred CcEEEcCCCcccCCcchhhhhhcccceeEeccCCeee
Q 048828 284 LISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLN 320 (367)
Q Consensus 284 L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~ 320 (367)
|+.|++++|++++ ++ .+..++.+ ++|++++|+|.
T Consensus 161 L~~L~l~~n~i~~-~~-~l~~l~~L-~~L~l~~N~i~ 194 (197)
T 4ezg_A 161 LKSLNIQFDGVHD-YR-GIEDFPKL-NQLYAFSQTIG 194 (197)
T ss_dssp CCEEECTTBCCCC-CT-TGGGCSSC-CEEEECBC---
T ss_pred CCEEECCCCCCcC-hH-HhccCCCC-CEEEeeCcccC
Confidence 6666666666553 22 44445555 66666666554
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=8.4e-18 Score=150.82 Aligned_cols=180 Identities=20% Similarity=0.242 Sum_probs=138.3
Q ss_pred cEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhcc-CCCCcceeecccccccccCChhhhhCCCCccEEEcc
Q 048828 13 GILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWIC-NISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVG 91 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (367)
++++++++.+.. +|..+. +.++.|++++|.++...+..+. .+++|++|++++|.+. .++...|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 678888888874 555443 4688999999999877777777 8899999999999998 6776667889999999999
Q ss_pred CCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccC
Q 048828 92 GNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDN 171 (367)
Q Consensus 92 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 171 (367)
+|.+....+..|.++++|++|++++|.+....+..|..+++|++|+|++|.++..... ....+..+++|+.|++++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE---LIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG---GTC----CTTCCEEECCSS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH---HhcCcccCCcCCEEECCCC
Confidence 9998877677788999999999999999888788899999999999999988754431 1122256889999999999
Q ss_pred ccccccChhhhhhcc-cceEEEecCCccc
Q 048828 172 QFGGELPHSIANLSS-TMIQFSIGGNQIS 199 (367)
Q Consensus 172 ~~~~~~~~~~~~~~~-~L~~l~l~~~~~~ 199 (367)
.+....+..+..++. .++.+++.+|.+.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 988433344444433 1477889888776
No 116
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.73 E-value=3.5e-16 Score=141.57 Aligned_cols=266 Identities=12% Similarity=0.080 Sum_probs=158.4
Q ss_pred CCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEE
Q 048828 33 LRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERL 112 (367)
Q Consensus 33 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 112 (367)
+..++.+.+... ++.+...+|.++ +|+.+.+..+ +. .++...|.++ +|+.+.+.. .+..+...+|.+|++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 355666666443 333445566654 5777776655 44 5565555553 577777765 4444555667777777777
Q ss_pred eCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEE
Q 048828 113 DLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFS 192 (367)
Q Consensus 113 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 192 (367)
++.+|.+..+...+|. ..+|+++.+..+ +...+. .++..|++|+.+.+..+ +.......|.. ..++.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~------~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~ 254 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS------QAFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTVK 254 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT------TTTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEEE
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehh------hHhhCCCCCCEEecCCC-ccCcccccccc--CCccEEE
Confidence 7777666655555555 467777777533 333222 35566677777777653 33122233333 3477777
Q ss_pred ecCCcccccCCccccCCCCCcEEEccCCccc-----ccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 193 IGGNQISGTIPPGIRNLVNLVALTMDSNQLH-----GTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 193 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
+. +.+......+|..|++|+++.+.++.+. ......|.+|++|+.+.+.++ ++.....+|..|++|+.+.+.+
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECT
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECc
Confidence 74 3344455667777777777777766543 234556677777777777743 5545566777777777777765
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCee
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLL 319 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i 319 (367)
+ ++.....+|..| +|+.+.+.+|.+....+..|..++..+..|++..+.+
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 5 444555667777 7777777777665444444555543335666665544
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=1e-15 Score=138.61 Aligned_cols=267 Identities=11% Similarity=0.103 Sum_probs=199.7
Q ss_pred cCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccE
Q 048828 8 NLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKE 87 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (367)
.+..++.+.+.+ .+......+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+. .++...|.++++|+.
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 346677777754 3554556677775 7999998776 665667778774 699999886 565 777778889999999
Q ss_pred EEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEE
Q 048828 88 LGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLS 167 (367)
Q Consensus 88 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 167 (367)
+++..+.+..+...+|. +.+|+.+.+..+ +..+...+|..+++|+++.+..+ ++..+. .++.. .+|+.+.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~------~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ------EAFRE-SGITTVK 254 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT------TTTTT-CCCSEEE
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc------ccccc-CCccEEE
Confidence 99998888855555665 689999999854 77677788999999999999764 333333 23344 6788898
Q ss_pred cccCccccccChhhhhhcccceEEEecCCccc-----ccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEcc
Q 048828 168 LYDNQFGGELPHSIANLSSTMIQFSIGGNQIS-----GTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLF 242 (367)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 242 (367)
+. +.+.......|..+ .+|+.+.+.++.+. .....+|..|++|+.+.+.++ ++......|.++++|+.+.+.
T Consensus 255 lp-~~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EE-TTCCEECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEEC
T ss_pred eC-CCccEEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEEC
Confidence 84 44442333444444 45999999887654 466788999999999999954 665667889999999999997
Q ss_pred CccccccCCccccCCCCCCeEEccCCeeccccCcccccCC-CCcEEEcCCCccc
Q 048828 243 RNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQ-NLISFRASHNKLT 295 (367)
Q Consensus 243 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~i~ 295 (367)
++ ++.....+|..+ +|+.+++.+|.........|..++ ++..+.+..+.+.
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 66 665777889998 999999999988766667787775 7889998877653
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.6e-17 Score=133.76 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=86.2
Q ss_pred CCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCcccccCCCCCc
Q 048828 31 GLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLE 110 (367)
Q Consensus 31 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 110 (367)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+....+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34456666666666665 333 4555666666666666543 222 235566666666666666544555566666666
Q ss_pred EEeCCCCcccccccccccCCCCCCeEEcCCCc-ccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhhcccce
Q 048828 111 RLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNN-LGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMI 189 (367)
Q Consensus 111 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 189 (367)
+|++++|.+.+..+..+..+++|++|++++|. ++.. ..+..+++|+.|++++|.+.+ ++ .+..++ +|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--------~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~-~L~ 184 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--------MPLKTLPELKSLNIQFDGVHD-YR-GIEDFP-KLN 184 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--------GGGGGCSSCCEEECTTBCCCC-CT-TGGGCS-SCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--------HhhcCCCCCCEEECCCCCCcC-hH-HhccCC-CCC
Confidence 66666666665555556666666666666665 3221 234556666666666666652 32 333333 366
Q ss_pred EEEecCCccc
Q 048828 190 QFSIGGNQIS 199 (367)
Q Consensus 190 ~l~l~~~~~~ 199 (367)
.|++++|++.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 6666666554
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.1e-16 Score=128.59 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=122.4
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCCc-cccCCCCCcEEEccCCcccccccccccCccCCcEEEcc
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPP-GIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLF 242 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 242 (367)
+.++++++.+. .+|..+.. .++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78999999886 67765433 589999999998876664 48889999999999999987778888889999999999
Q ss_pred CccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeec
Q 048828 243 RNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGS 322 (367)
Q Consensus 243 ~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~ 322 (367)
+|++++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..... ..+ +...+..+...+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~-~~l-~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA-EWL-RKKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH-HHH-HHHCCSGGGCBBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH-HHH-HHcCCCCCCCCCC
Confidence 99999877788888999999999999999887888888999999999999998765543211 111 2223444444555
Q ss_pred cCccc
Q 048828 323 LPLQM 327 (367)
Q Consensus 323 ~p~~~ 327 (367)
.|..+
T Consensus 165 ~P~~l 169 (192)
T 1w8a_A 165 APSKV 169 (192)
T ss_dssp SSTTT
T ss_pred CChHH
Confidence 55543
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.5e-16 Score=133.12 Aligned_cols=169 Identities=21% Similarity=0.239 Sum_probs=97.7
Q ss_pred CCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEE
Q 048828 9 LSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKEL 88 (367)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 88 (367)
+.++..++++++.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEE
Confidence 344555566666655322 34556666666666666653 33 4556666666666666665 4443 4566666667
Q ss_pred EccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEc
Q 048828 89 GVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSL 168 (367)
Q Consensus 89 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 168 (367)
++++|.+.. ++. +.. ++|++|++++|.+.+. ..+..+++|++|++++|+++.. ..+..+++|+.|++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--------~~l~~l~~L~~L~L 157 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--------VMLGFLSKLEVLDL 157 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--------GGGGGCTTCCEEEC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--------hHHccCCCCCEEEC
Confidence 766666653 332 222 6666677766666543 2366666677777766665432 23455666667777
Q ss_pred ccCccccccChhhhhhcccceEEEecCCcccc
Q 048828 169 YDNQFGGELPHSIANLSSTMIQFSIGGNQISG 200 (367)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 200 (367)
++|.+.+. ..+..+. +|+.|++++|.+..
T Consensus 158 ~~N~i~~~--~~l~~l~-~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLK-KVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSCCCBC--TTSTTCC-CCCEEEEEEEEEEC
T ss_pred CCCcCcch--HHhccCC-CCCEEeCCCCcccC
Confidence 66666533 3333333 36667776666553
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=4.1e-16 Score=126.86 Aligned_cols=136 Identities=22% Similarity=0.300 Sum_probs=95.8
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccc-cccCccCCcEEEccCccccccCCccccCCCCCCeEEcc
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPD-VIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALS 266 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~ 266 (367)
.+.++++++.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 356777777765 3444332 2777777777777755443 46677777777877777776667777777777778887
Q ss_pred CCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccc
Q 048828 267 FNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQM 327 (367)
Q Consensus 267 ~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~ 327 (367)
+|.+++..+..+..+++|+.|++++|++++..|..+..++.+ ++|++++|+++|+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~c~c~l~~ 146 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL-TSLNLASNPFNCNCHLAW 146 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC-CEEECTTCCBCCSGGGHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC-CEEEeCCCCccCcCcchH
Confidence 777776666667777777777887777776667777666666 777777777777766543
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=2e-16 Score=135.26 Aligned_cols=170 Identities=24% Similarity=0.273 Sum_probs=111.2
Q ss_pred CCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhhh
Q 048828 105 NASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIANL 184 (367)
Q Consensus 105 ~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 184 (367)
.+.++..++++++.+.... .+..+++|++|++++|.++.. ..+..+++|+.|++++|.+.+ ++. +..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l--------~~l~~l~~L~~L~L~~N~i~~-~~~-l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL--------AGMQFFTNLKELHLSHNQISD-LSP-LKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC--------TTGGGCTTCCEEECCSSCCCC-CGG-GTTC
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc--------hHHhhCCCCCEEECCCCccCC-Chh-hccC
Confidence 3456677777887776443 467788888888888877532 245667888888888887773 333 4444
Q ss_pred cccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEE
Q 048828 185 SSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLA 264 (367)
Q Consensus 185 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 264 (367)
. +|+.|++++|.+.+..+ +.. ++|++|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|+.|+
T Consensus 85 ~-~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 85 T-KLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLD 156 (263)
T ss_dssp S-SCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEE
T ss_pred C-CCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEE
Confidence 3 37777777777764322 122 6777777777777642 2 356667777777777777643 2 456667777777
Q ss_pred ccCCeeccccCcccccCCCCcEEEcCCCcccC
Q 048828 265 LSFNNLQGNIPSSLGNCQNLISFRASHNKLTG 296 (367)
Q Consensus 265 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 296 (367)
+++|.+.+. ..+..+++|+.|++++|++++
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 777777643 456667777777777777663
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=4.4e-19 Score=167.67 Aligned_cols=104 Identities=23% Similarity=0.380 Sum_probs=56.8
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
++.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .++.+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 5555555555553 333 555555555555555555 445555555555555555555553 33 455555555555555
Q ss_pred Ceecccc-CcccccCCCCcEEEcCCCcccC
Q 048828 268 NNLQGNI-PSSLGNCQNLISFRASHNKLTG 296 (367)
Q Consensus 268 n~i~~~~-~~~~~~~~~L~~L~l~~n~i~~ 296 (367)
|.+++.. |..+..+++|+.|++++|++++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 5555433 5555555555555555555553
No 124
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.66 E-value=7.8e-15 Score=133.09 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=71.9
Q ss_pred hhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCC
Q 048828 5 FIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPN 84 (367)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 84 (367)
+|.+|.+|+.+.+..+ +......+|.+|++|+.+++..+ ++.+...+|.++.+|+.+.+..+ +. .+....|.++..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecccc
Confidence 4778888888888643 55556677888888888888654 44455667777777777766543 22 333333333332
Q ss_pred ccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCC
Q 048828 85 LKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQ 140 (367)
Q Consensus 85 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 140 (367)
++..... ........+|.++.+|+.+.+..+ +..+...+|..+.+|+.+.+..
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence 2221111 111123344555666666665443 2223444555555565555543
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.4e-16 Score=123.36 Aligned_cols=132 Identities=22% Similarity=0.251 Sum_probs=80.1
Q ss_pred CCCCcEEEccCcccC-CCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccE
Q 048828 9 LSALGILLIRWNSLG-GQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKE 87 (367)
Q Consensus 9 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 87 (367)
.++|++|++++|.+. +.++..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.++ ..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCE
Confidence 356677777777665 45555566666777777777766643 556666667777777766663233 33445666777
Q ss_pred EEccCCcceeeC-cccccCCCCCcEEeCCCCccccccc---ccccCCCCCCeEEcCCCcc
Q 048828 88 LGVGGNNFVGSI-PDSLSNASNLERLDLPGNQFKGKVS---IDFSSLKNLWWLNLEQNNL 143 (367)
Q Consensus 88 L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~~~~~ 143 (367)
|++++|.++... +..+..+++|++|++++|.+....+ ..+..+++|++|++.+|.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777666665321 1456666666666666666654433 3455666666666666554
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4e-16 Score=124.13 Aligned_cols=134 Identities=22% Similarity=0.164 Sum_probs=78.3
Q ss_pred ceEEEecCCccc-ccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEcc
Q 048828 188 MIQFSIGGNQIS-GTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALS 266 (367)
Q Consensus 188 L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~ 266 (367)
++.|++++|.+. +..|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 555555555554 33444455666666666666666533 445566666666666666665455555556666666666
Q ss_pred CCeeccccC-cccccCCCCcEEEcCCCcccCCcc---hhhhhhcccceeEeccCCeeeeccCc
Q 048828 267 FNNLQGNIP-SSLGNCQNLISFRASHNKLTGALP---YQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 267 ~n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
+|.+++... ..+..+++|+.|++++|++++..+ ..+..++.+ ++|++++|.+. ++|.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L-~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL-TYLDGYDREDQ-EAPD 164 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC-CEETTEETTSC-BCCS
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC-cEecCCCCChh-hccc
Confidence 666664211 456666667777777776663333 245555555 66777666665 4443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=6.5e-19 Score=166.47 Aligned_cols=122 Identities=24% Similarity=0.271 Sum_probs=98.1
Q ss_pred CCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEc
Q 048828 162 SLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFL 241 (367)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 241 (367)
.|+.|++++|.+. .+|. +..+.. |+.|++++|.+. .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~-L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLL-VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTT-CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC-cccccc-CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 4788888888887 4665 555544 888999888888 677888899999999999999985 55 6888999999999
Q ss_pred cCccccccC-CccccCCCCCCeEEccCCeeccccCc---ccccCCCCcEEEc
Q 048828 242 FRNFLQGSI-PPSLGNLTKLADLALSFNNLQGNIPS---SLGNCQNLISFRA 289 (367)
Q Consensus 242 ~~~~i~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l 289 (367)
++|.+++.. |..+..+++|+.|++++|.+++..+. .+..+|+|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999998766 88888999999999999999865442 2344788888864
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=123.38 Aligned_cols=127 Identities=19% Similarity=0.279 Sum_probs=75.5
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccC
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 243 (367)
+.++++++.+. .+|..+ +.+++.|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666665 445432 234666666666665 3445566666666666666666655555566666666666666
Q ss_pred ccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 244 NFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 244 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
|++++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666555555666666666666666666444444555666666666666554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=7.9e-16 Score=119.82 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=99.2
Q ss_pred cCCCCcEEEccCcccC-CCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCcc
Q 048828 8 NLSALGILLIRWNSLG-GQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLK 86 (367)
Q Consensus 8 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 86 (367)
..++|++|++++|.+. +.++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCC
Confidence 3467888999988887 66777778888899999988888755 667888888888888888873344 4456688888
Q ss_pred EEEccCCcceee-CcccccCCCCCcEEeCCCCccccccc---ccccCCCCCCeEEcC
Q 048828 87 ELGVGGNNFVGS-IPDSLSNASNLERLDLPGNQFKGKVS---IDFSSLKNLWWLNLE 139 (367)
Q Consensus 87 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~ 139 (367)
+|++++|.++.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888887742 23667888888888888888876554 457778888887765
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.5e-16 Score=154.89 Aligned_cols=192 Identities=17% Similarity=0.163 Sum_probs=114.8
Q ss_pred CCCcEEEccCcccCCCCccccCCCCCCcE-----EEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCC
Q 048828 10 SALGILLIRWNSLGGQIPTTLGLLRNLVY-----LNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPN 84 (367)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~-----L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 84 (367)
++++.|++.++.+... +..+-....|.. +++..+.+. ..+..+..++.|+.|++++|.+. .++..++ .+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCC
Confidence 5678888888877643 332222222332 333344444 56778889999999999999998 8887776 8999
Q ss_pred ccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCc
Q 048828 85 LKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLK 164 (367)
Q Consensus 85 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 164 (367)
|++|+|++|.++ .+|..+.++++|++|++++|.+. .+|..+..+++|++|+|++|.++.. +..+..+++|+
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~l-------p~~~~~l~~L~ 319 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTL-------PWEFGNLCNLQ 319 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCC-------CSSTTSCTTCC
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCcc-------ChhhhcCCCcc
Confidence 999999999998 78888999999999999999998 5688899999999999999988632 34578899999
Q ss_pred EEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCC
Q 048828 165 SLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSN 220 (367)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 220 (367)
.|++++|.+.+..+..+.........+++.+|.+.+..|.. |+.|+++.|
T Consensus 320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 99999999987777776554332334667777777655543 444555554
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.7e-15 Score=117.91 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=95.8
Q ss_pred ccceEEEecCCccc-ccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEE
Q 048828 186 STMIQFSIGGNQIS-GTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLA 264 (367)
Q Consensus 186 ~~L~~l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 264 (367)
.+++.+++++|.+. +..|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34777777777776 45666777888888888888888754 5677788888888888888865666666678888888
Q ss_pred ccCCeeccc-cCcccccCCCCcEEEcCCCcccCCcc---hhhhhhcccceeEeccC
Q 048828 265 LSFNNLQGN-IPSSLGNCQNLISFRASHNKLTGALP---YQLLSITTLSLYLDLSY 316 (367)
Q Consensus 265 l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~ll~~L~l~~ 316 (367)
+++|.+++. .+..+..+++|+.|++++|++++..+ ..+..++.+ ++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L-~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL-TYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC-CEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc-ccccCCC
Confidence 888888753 23667788888888888888885544 356666766 8887753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=6e-15 Score=118.34 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=99.0
Q ss_pred CCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEc
Q 048828 162 SLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFL 241 (367)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 241 (367)
..+.++++++.+. .+|..+ +.+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3567888887776 455433 235888888888887666667778888888888888887655666677888888888
Q ss_pred cCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcc
Q 048828 242 FRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALP 299 (367)
Q Consensus 242 ~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 299 (367)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888886666667777888888888888876555556777888888888888875544
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=118.41 Aligned_cols=125 Identities=26% Similarity=0.330 Sum_probs=64.9
Q ss_pred cEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccC
Q 048828 13 GILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGG 92 (367)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (367)
++++++++.+. .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+. .++...|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 44555555555 2333222 35555666655555 34455555555555555555555 44444445555555555555
Q ss_pred CcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCc
Q 048828 93 NNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNN 142 (367)
Q Consensus 93 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~ 142 (367)
|.++...+..|..+++|++|++++|.+....+..+..+++|++|++.+|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 55554444455555555555555555554444444445555555555444
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.1e-14 Score=116.72 Aligned_cols=133 Identities=24% Similarity=0.233 Sum_probs=106.7
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
.+.++++++.+.. .|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 5678888887774 34332 36899999999999866666778889999999999999876667778889999999999
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccC
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLP 324 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p 324 (367)
|.+++..+..+..+++|+.|++++|++++..+..+..++.+ ++|++++|++++.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc-CEEEecCCCeeccCc
Confidence 99987666677889999999999999985444445566677 999999999987776
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=6.5e-16 Score=150.42 Aligned_cols=136 Identities=27% Similarity=0.273 Sum_probs=70.1
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
|+.|++++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++
T Consensus 226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 455555555444 23333335555555555555555 44455555555555555555555 4455555555555555555
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccc
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQM 327 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~ 327 (367)
|.++ .+|..+..+++|+.|+|++|++++.+|..+.........+++++|.+++.+|..+
T Consensus 303 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 303 NMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp SCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 5555 3444455555555555555555555555544432221234555555555555543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.6e-15 Score=120.35 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=51.3
Q ss_pred hccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
+.++++|++|++++|.+.. ++......++|++|++++|.+++. ..+..+++|++|++++|.+. .++..++..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 3445555555555555542 222112222555555555555432 34444555555555555554 3443444445555
Q ss_pred cEEEccCCcceeeCcc--cccCCCCCcEEeCCCCccc
Q 048828 86 KELGVGGNNFVGSIPD--SLSNASNLERLDLPGNQFK 120 (367)
Q Consensus 86 ~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~ 120 (367)
++|++++|.+. .+|. .+..+++|++|++++|.+.
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 55555555443 2332 3444455555555555444
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.5e-13 Score=124.58 Aligned_cols=288 Identities=14% Similarity=0.043 Sum_probs=178.3
Q ss_pred chhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCC
Q 048828 4 DFIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLP 83 (367)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 83 (367)
.+|.+|++|+.+++.++ +......+|..+++|+.+.+..+ +..+...+|.++..++....... . .+....|.++.
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~-~i~~~aF~~c~ 162 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--T-VIGDEAFATCE 162 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--C-EECTTTTTTCT
T ss_pred hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccc--c-ccchhhhcccC
Confidence 35889999999999755 55456678899999999888655 33355566776654443333322 2 44556678889
Q ss_pred CccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCC
Q 048828 84 NLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSL 163 (367)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L 163 (367)
+|+.+.+..+.. .+....|.++.+|+.+.+..+ +..+...++..+..|+.+.+..+..... .....+..|
T Consensus 163 ~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~--------~~~~~~~~l 232 (394)
T 4fs7_A 163 SLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG--------DFALSKTGV 232 (394)
T ss_dssp TCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC--------TTTTTTCCC
T ss_pred CCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee--------hhhcccCCC
Confidence 999999876543 355677888999999988765 5556667788888888877765432111 122334567
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccC
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 243 (367)
+.+.+.... . .+..........++.+.+..+... .....+..+..++.+......+. ...|..+.+|+.+.+.+
T Consensus 233 ~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 233 KNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT
T ss_pred ceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccccc
Confidence 777765432 2 222222223334677776655332 45556667777777666554322 23455667777777765
Q ss_pred ccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccC
Q 048828 244 NFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSY 316 (367)
Q Consensus 244 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~ 316 (367)
+ ++.....+|..+.+|+.+++.++ ++.....+|..|.+|+.+.+..+ ++..-..+|..+..+ +.+++..
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~lp~ 375 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL-KKVELPK 375 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC-CEEEEEG
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC-CEEEECC
Confidence 4 44345556666777777777654 44345566777777777777655 442233445555555 6666654
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.56 E-value=1.6e-12 Score=117.93 Aligned_cols=295 Identities=11% Similarity=0.090 Sum_probs=192.5
Q ss_pred hhccCC-CCcEEEccCcccCCCCccccCCCCCCcEEEccCcc---ccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 5 FIGNLS-ALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQ---FSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 5 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
+|.++. .|+.+.+... +......+|.+|.+|+.+.+..+. ++.+...+|..+.+|+.+.+..+ +. .++...|.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhh
Confidence 466664 5888888643 555667788888888888887653 55555677888888888877654 33 56667777
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCccccccCCC
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNC 160 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
.+.+|+.+.+..+. ..+....|..+..|+.+.+..+ +..+...+|.. .+|+.+.+...-.. .+ ...+..|
T Consensus 135 ~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~------~~af~~c 204 (394)
T 4gt6_A 135 HCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IG------TNAFSEC 204 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-EC------TTTTTTC
T ss_pred hhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cc------cchhhhc
Confidence 88888888887543 3355667888888888888764 44455555643 56788777644221 11 1345566
Q ss_pred CCCcEEEcccCccccccChhhhhhc-------------ccceEEEecCCcccccCCccccCCCCCcEEEccCCccccccc
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLS-------------STMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIP 227 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~-------------~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 227 (367)
..++.......... .....+.... ..+..+.+.. .+......+|..|.+|+.+.+..+... ...
T Consensus 205 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~ 281 (394)
T 4gt6_A 205 FALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGT 281 (394)
T ss_dssp TTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECT
T ss_pred cccceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecC
Confidence 77777666543322 1111111100 0122222221 223344567888899999998876543 556
Q ss_pred ccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcc
Q 048828 228 DVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITT 307 (367)
Q Consensus 228 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ 307 (367)
..|..+++|+.+.+.. .++.....+|..|.+|+.+++..+ ++.....+|..|.+|+.+.+..+ ++..-..+|..+..
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 6778889999999864 455466678888899999999875 55456678888999999999765 54233456666667
Q ss_pred cceeEeccCCee
Q 048828 308 LSLYLDLSYNLL 319 (367)
Q Consensus 308 ll~~L~l~~n~i 319 (367)
+ +.+++.++..
T Consensus 359 L-~~i~~~~~~~ 369 (394)
T 4gt6_A 359 L-NNIEYSGSRS 369 (394)
T ss_dssp C-CEEEESSCHH
T ss_pred C-CEEEECCcee
Confidence 7 8888887754
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.4e-14 Score=114.62 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=63.1
Q ss_pred CCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCc
Q 048828 158 TNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQ 237 (367)
Q Consensus 158 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 237 (367)
..+.+|++|++++|.+. .++. +....++++.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34455556666655554 2221 222222355555555544432 3445555555555555555533333334555555
Q ss_pred EEEccCccccccCCc--cccCCCCCCeEEccCCeeccccCc----ccccCCCCcEEEcCCCcc
Q 048828 238 VLFLFRNFLQGSIPP--SLGNLTKLADLALSFNNLQGNIPS----SLGNCQNLISFRASHNKL 294 (367)
Q Consensus 238 ~L~l~~~~i~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~i 294 (367)
.|++++|.+++ .+. .+..+++|+.|++++|.+.. .+. .+..+++|+.|++++|..
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555542 222 34445555555555555542 222 244455555555555544
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.51 E-value=2.4e-12 Score=116.70 Aligned_cols=300 Identities=10% Similarity=0.080 Sum_probs=199.6
Q ss_pred chhccCCCCcEEEccCcc---cCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhh
Q 048828 4 DFIGNLSALGILLIRWNS---LGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILV 80 (367)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 80 (367)
.+|.+|++|+.+.+..+. +......+|..|.+|+.+.+..+ ++.+...+|..+.+|+.+.+..+. . .++...|.
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~ 157 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-T-SVADGMFS 157 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-C-EECTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-e-eeccccee
Confidence 358899999999998653 55556778999999999888765 444667789999999999997543 3 67777888
Q ss_pred CCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCCCCc-------c
Q 048828 81 NLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTANDLD-------F 153 (367)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------~ 153 (367)
.+..|+.+.+..+ +..+...+|.+ ..|+.+.+..+ .......++..+.+++.................. .
T Consensus 158 ~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T 4gt6_A 158 YCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYA 234 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE
T ss_pred cccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccccccccceeeccccccccc
Confidence 9999999999865 44355556654 57999998764 3445666788888888887765443222110000 0
Q ss_pred ccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCc
Q 048828 154 VTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGEL 233 (367)
Q Consensus 154 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 233 (367)
.........+..+.+.. .+.......|..+ ..++.+.+...... ....+|..+++|+.+.+... ++......|.++
T Consensus 235 ~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c-~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c 310 (394)
T 4gt6_A 235 LIRYPSQREDPAFKIPN-GVARIETHAFDSC-AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGC 310 (394)
T ss_dssp EEECCTTCCCSEEECCT-TEEEECTTTTTTC-SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccccccccccceEEcCC-cceEcccceeeec-ccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCC
Confidence 01112233444555532 2221223333333 34888888765433 56678889999999999753 554566788899
Q ss_pred cCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEe
Q 048828 234 KNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLD 313 (367)
Q Consensus 234 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~ 313 (367)
.+|+.+.+.++ ++.....+|..|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.++... ..++.....+ +.+.
T Consensus 311 ~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L-~~i~ 384 (394)
T 4gt6_A 311 ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGL-QNLP 384 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----
T ss_pred CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCC-CEEE
Confidence 99999999865 55466778999999999999765 55466678999999999999987543 1334444455 7776
Q ss_pred ccCCee
Q 048828 314 LSYNLL 319 (367)
Q Consensus 314 l~~n~i 319 (367)
+..+.+
T Consensus 385 i~~~~~ 390 (394)
T 4gt6_A 385 VAPGSI 390 (394)
T ss_dssp ------
T ss_pred eCCCCE
Confidence 665543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=4.2e-13 Score=106.62 Aligned_cols=107 Identities=24% Similarity=0.258 Sum_probs=84.6
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
.+.++++++.+.. +|..+ .+++++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5678888888774 44433 37788888888888877777788888888888888888876666778888888888888
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccCC
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTGA 297 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~ 297 (367)
|.+.+..+..+..+++|+.|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888866666688888888888888888744
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=3.3e-15 Score=122.12 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=122.5
Q ss_pred hccCCCCcEEEccCcccCCCCcc------ccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhh
Q 048828 6 IGNLSALGILLIRWNSLGGQIPT------TLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDIL 79 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 79 (367)
+.....++.++++.+.+.+..+. .+..+++|++|++++|.+.. +| .+..+++|++|++++|.+. .++. .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hh
Confidence 45667788888888888777665 78889999999999999885 55 7888899999999999997 7775 34
Q ss_pred hCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCccccccc-ccccCCCCCCeEEcCCCcccCcCCC----CCccc
Q 048828 80 VNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVS-IDFSSLKNLWWLNLEQNNLGMGTAN----DLDFV 154 (367)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~ 154 (367)
..+++|++|++++|.+.. +| .+..+++|++|++++|.+..... ..+..+++|++|++++|.+....+. .-...
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 567899999999998874 44 57888999999999998886443 4678899999999999987533211 00111
Q ss_pred cccCCCCCCcEEEcccCccc
Q 048828 155 TSLTNCSSLKSLSLYDNQFG 174 (367)
Q Consensus 155 ~~~~~~~~L~~L~l~~~~~~ 174 (367)
..+..+++|+.|+ ++.+.
T Consensus 168 ~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 168 EVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHCSSCSEEC--CGGGT
T ss_pred HHHHhCCCcEEEC--CcccC
Confidence 2356788999886 55554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.5e-12 Score=103.49 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=63.4
Q ss_pred CcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEcc
Q 048828 12 LGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVG 91 (367)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (367)
.++++++++.+.. +|..+. ++|++|++++|.++...+..|..+++|++|++++|.+. .++...|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 3566666666653 343332 56666666666666555666666666666666666665 5555555566666666666
Q ss_pred CCcceeeCcccccCCCCCcEEeCCCCccc
Q 048828 92 GNNFVGSIPDSLSNASNLERLDLPGNQFK 120 (367)
Q Consensus 92 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 120 (367)
+|.++...+..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66666444444566666666666666554
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.41 E-value=6.6e-11 Score=106.63 Aligned_cols=309 Identities=10% Similarity=0.081 Sum_probs=165.3
Q ss_pred hccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCCc
Q 048828 6 IGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNL 85 (367)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 85 (367)
+....+|+.+.+.+. ++.....+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +. .+....|... +|
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CC
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cc
Confidence 445566666666532 44445566777777777777543 444555566665 4665555433 33 4555555443 67
Q ss_pred cEEEccCCcceeeCcccccCCCCCcEEeCCCCcccccccccccCCCCCCeEEcCCCcccCcCCC------CCccccccCC
Q 048828 86 KELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFSSLKNLWWLNLEQNNLGMGTAN------DLDFVTSLTN 159 (367)
Q Consensus 86 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~~~ 159 (367)
+.+.+..+. .......|.++ .++.+.+..+ +......++..+..++.+.+........... .......+..
T Consensus 116 ~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 777776542 22333444444 4555554432 3334445566666776666654322111000 0011122334
Q ss_pred CCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEE
Q 048828 160 CSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVL 239 (367)
Q Consensus 160 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 239 (367)
+..+..+.+...... ..... ......++.+.+..+ +......++..+..|+.+.+..+ ++......|..+.+|+.+
T Consensus 193 ~~~~~~~~~~~~~~~-i~~~~-f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-VTAYG-FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTCCE-ECTTT-TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccceeE-Eeecc-cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 444555544332211 11112 222233666665443 23344556677777777777665 443445566777777777
Q ss_pred EccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCee
Q 048828 240 FLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLL 319 (367)
Q Consensus 240 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i 319 (367)
.+..+ ++......|..|.+|+.+.+.++.++.....+|..|.+|+.+.+..+ ++..-..+|..+..+ +.+.+..+ +
T Consensus 269 ~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~ip~~-v 344 (379)
T 4h09_A 269 NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL-STISYPKS-I 344 (379)
T ss_dssp EECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC-CCCCCCTT-C
T ss_pred ccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC-CEEEECCc-c
Confidence 77654 44355566777778888888777666556677777888888877654 332223455555556 77766543 4
Q ss_pred eeccCccccCCCC
Q 048828 320 NGSLPLQMFTGRR 332 (367)
Q Consensus 320 ~~~~p~~~~~~~~ 332 (367)
+ .+....|.+..
T Consensus 345 ~-~I~~~aF~~c~ 356 (379)
T 4h09_A 345 T-LIESGAFEGSS 356 (379)
T ss_dssp C-EECTTTTTTSS
T ss_pred C-EEchhHhhCCC
Confidence 4 44444444433
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.3e-12 Score=104.08 Aligned_cols=106 Identities=24% Similarity=0.295 Sum_probs=88.5
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
-+.++++++.+. .+|..+. ++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 467888888887 4555443 7899999999999877788888899999999999999976666778889999999999
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccC
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTG 296 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~ 296 (367)
|.+.+..+..+..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99986666668889999999999999873
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=2.9e-14 Score=127.82 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=84.0
Q ss_pred CCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccc-----cCCCCCcEEEccCCcccccc----ccccc
Q 048828 161 SSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGI-----RNLVNLVALTMDSNQLHGTI----PDVIG 231 (367)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~----~~~~~ 231 (367)
++|++|++++|.+.......+.....+++.|++++|.++......+ ...++|++|++++|.+++.. +..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555554433333333322345666666665543322222 24567888888888776432 23345
Q ss_pred CccCCcEEEccCccccccC----CccccCCCCCCeEEccCCeecccc----CcccccCCCCcEEEcCCCcccCCcchhhh
Q 048828 232 ELKNLQVLFLFRNFLQGSI----PPSLGNLTKLADLALSFNNLQGNI----PSSLGNCQNLISFRASHNKLTGALPYQLL 303 (367)
Q Consensus 232 ~~~~L~~L~l~~~~i~~~~----~~~l~~~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 303 (367)
.+++|++|+|++|.+++.. +..+..+++|+.|++++|.+++.. ...+..+++|++|+|++|.+++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 6677888888888776432 344556677888888888776432 23344567888888888888755444444
Q ss_pred h
Q 048828 304 S 304 (367)
Q Consensus 304 ~ 304 (367)
.
T Consensus 261 ~ 261 (372)
T 3un9_A 261 D 261 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=4.3e-15 Score=121.46 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=49.1
Q ss_pred ceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 188 MIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 188 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
++.|++++|.+.. .+ .+..+++|++|++++|.++ ..+..+..+++|+.|++++|++++ .+ .+..+++|+.|++++
T Consensus 50 L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 50 CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence 4444444444442 22 3444455555555555554 333334444555555555555543 22 344445555555555
Q ss_pred CeeccccC-cccccCCCCcEEEcCCCcccCC
Q 048828 268 NNLQGNIP-SSLGNCQNLISFRASHNKLTGA 297 (367)
Q Consensus 268 n~i~~~~~-~~~~~~~~L~~L~l~~n~i~~~ 297 (367)
|.+.+... ..+..+++|+.|++++|++.+.
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 55543211 2344555555555555555433
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=3.6e-12 Score=101.58 Aligned_cols=104 Identities=25% Similarity=0.292 Sum_probs=69.4
Q ss_pred cEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccC
Q 048828 164 KSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243 (367)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 243 (367)
+.++++++.+. .+|..+. ..++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56677776665 5555432 3477777777777766666677777777777777777655455556677777777777
Q ss_pred ccccccCCccccCCCCCCeEEccCCeec
Q 048828 244 NFLQGSIPPSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 244 ~~i~~~~~~~l~~~~~L~~L~l~~n~i~ 271 (367)
|++++..+..+..+++|+.|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7777555555666777777777777665
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=2.4e-14 Score=128.35 Aligned_cols=187 Identities=18% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCcceeecccccccccCChhh---hh-CCCCccEEEccCCcceeeCcccc-cCCCCCcEEeCCCCcccccccccc-----
Q 048828 58 SSLELIYLTVNRFSGSLPFDI---LV-NLPNLKELGVGGNNFVGSIPDSL-SNASNLERLDLPGNQFKGKVSIDF----- 127 (367)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l----- 127 (367)
+.|+.|++++|.++......+ +. ..++|++|++++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 455566666665542111111 11 12456666666665542212111 223456666666666554333222
Q ss_pred cCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccC----hhhhhhcccceEEEecCCccccc--
Q 048828 128 SSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELP----HSIANLSSTMIQFSIGGNQISGT-- 201 (367)
Q Consensus 128 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~-- 201 (367)
...++|++|++++|.++..+.. .+...+..+++|++|++++|.+.+... ..+... ..|+.|++++|.++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSCCCHHHH
T ss_pred hcCCccceeeCCCCCCChHHHH--HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCCCCHHHH
Confidence 2345666666666655432221 122233455666666666666553322 122222 2466677776666542
Q ss_pred --CCccccCCCCCcEEEccCCcccccccccccCc---c--CCcEEE--ccCcccc
Q 048828 202 --IPPGIRNLVNLVALTMDSNQLHGTIPDVIGEL---K--NLQVLF--LFRNFLQ 247 (367)
Q Consensus 202 --~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~---~--~L~~L~--l~~~~i~ 247 (367)
++.++..+++|++|++++|.+++.....+... . .++.+. +..+.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23344566788888888888875544433322 1 166666 5555554
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=5.8e-10 Score=100.46 Aligned_cols=268 Identities=11% Similarity=0.051 Sum_probs=185.8
Q ss_pred hhccCCCCcEEEccCcccCCCCccccCCCCCCcEEEccCccccCCcchhccCCCCcceeecccccccccCChhhhhCCCC
Q 048828 5 FIGNLSALGILLIRWNSLGGQIPTTLGLLRNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPN 84 (367)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 84 (367)
+|.+|.+|+.+.+..+ +......+|.++ +|+.+.+..+ +..+...+|... +|+.+.+..+- . .+....|.++ +
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~-~i~~~~F~~~-~ 136 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-T-EIGNYIFYNS-S 136 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-C-EECTTTTTTC-C
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-c-cccccccccc-e
Confidence 5899999999999754 565667788887 6888888654 444555667654 79999998653 2 5556666554 6
Q ss_pred ccEEEccCCcceeeCcccccCCCCCcEEeCCCCcccc------------cccccccCCCCCCeEEcCCCcccCcCCCCCc
Q 048828 85 LKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKG------------KVSIDFSSLKNLWWLNLEQNNLGMGTANDLD 152 (367)
Q Consensus 85 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 152 (367)
++.+.+..+ +..+....+..+.+++.+.+....... .....+.....+..+.+...... .
T Consensus 137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------i 208 (379)
T 4h09_A 137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-------V 208 (379)
T ss_dssp CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-------E
T ss_pred eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-------E
Confidence 777776654 344566778889999998876553221 11122344555666655433211 1
Q ss_pred cccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccccccccC
Q 048828 153 FVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGE 232 (367)
Q Consensus 153 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 232 (367)
....+..+..++.+.+..+ +.......+... ..|+.+.+..+ +......+|..+.+|+.+.+..+ +.......|.+
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred eecccccccccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence 1234566788888888654 231233333333 34888888765 55566778899999999999765 44355667889
Q ss_pred ccCCcEEEccCccccccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCC
Q 048828 233 LKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHN 292 (367)
Q Consensus 233 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n 292 (367)
+++|+.+.+.++.++.....+|..|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 999999999998888677788999999999999875 55466678999999999988765
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=3.8e-11 Score=106.88 Aligned_cols=132 Identities=17% Similarity=0.100 Sum_probs=96.2
Q ss_pred EEEecCC-cccccCCccccCCCCCcEEEccC-CcccccccccccCccCCcEEEccCccccccCCccccCCCCCCeEEccC
Q 048828 190 QFSIGGN-QISGTIPPGIRNLVNLVALTMDS-NQLHGTIPDVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSF 267 (367)
Q Consensus 190 ~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 267 (367)
.++.+++ .+. .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 677 4666 88889999999996 999877777888899999999999999988888888999999999999
Q ss_pred CeeccccCcccccCCCCcEEEcCCCcccCCcc-hhhhhhcccceeEeccCCeeeeccCc
Q 048828 268 NNLQGNIPSSLGNCQNLISFRASHNKLTGALP-YQLLSITTLSLYLDLSYNLLNGSLPL 325 (367)
Q Consensus 268 n~i~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~ll~~L~l~~n~i~~~~p~ 325 (367)
|.+.+..+..+..++ |+.|++.+|++..... ..+...... ....+..+.++|..|.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~-~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEE-GLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHT-TCSSCGGGCCCCSSSS
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHh-CcccccccCCCCCCCh
Confidence 999865555555554 9999999998874322 122222222 2333444556665555
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=1.3e-10 Score=103.31 Aligned_cols=105 Identities=23% Similarity=0.219 Sum_probs=83.9
Q ss_pred cEEEcccC-ccccccChhhhhhcccceEEEecC-CcccccCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEc
Q 048828 164 KSLSLYDN-QFGGELPHSIANLSSTMIQFSIGG-NQISGTIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFL 241 (367)
Q Consensus 164 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 241 (367)
..++.+++ .+. .+|. +..+. +|+.|++++ |.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 34677777 676 5777 55444 489999986 8888777788889999999999999998777888888999999999
Q ss_pred cCccccccCCccccCCCCCCeEEccCCeecc
Q 048828 242 FRNFLQGSIPPSLGNLTKLADLALSFNNLQG 272 (367)
Q Consensus 242 ~~~~i~~~~~~~l~~~~~L~~L~l~~n~i~~ 272 (367)
++|++++..+..+..++ |+.|++.+|.+..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999866666666555 9999999988873
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=3.9e-10 Score=100.22 Aligned_cols=167 Identities=22% Similarity=0.237 Sum_probs=87.7
Q ss_pred hhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCCCCccccccccccc--CCCCCCeEEcCCC--ccc-CcCCCCC
Q 048828 77 DILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLPGNQFKGKVSIDFS--SLKNLWWLNLEQN--NLG-MGTANDL 151 (367)
Q Consensus 77 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~l~~~--~~~-~~~~~~~ 151 (367)
.++..+|+|+.|+++++.-. .++. +. +++|++|++..+.+.......+. .+|+|++|+|+.+ ... ......+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44566788888888776311 2232 33 67888888877776544333333 6788888877532 111 0001111
Q ss_pred ccccccCCCCCCcEEEcccCccccccChhhhhhcccceEEEecCCcccccCCccccCCCCCcEEEccCCcccccc----c
Q 048828 152 DFVTSLTNCSSLKSLSLYDNQFGGELPHSIANLSSTMIQFSIGGNQISGTIPPGIRNLVNLVALTMDSNQLHGTI----P 227 (367)
Q Consensus 152 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~----~ 227 (367)
........+++|+.|.+.+|.+....+..+.. ...+++|++|+++.|.+++.. +
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHH
Confidence 11111134677777777776665322222211 013466777777777766432 2
Q ss_pred ccccCccCCcEEEccCccccccCCccccCCCCCCeEEccCCe
Q 048828 228 DVIGELKNLQVLFLFRNFLQGSIPPSLGNLTKLADLALSFNN 269 (367)
Q Consensus 228 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~n~ 269 (367)
..+..+++|+.|++++|.+++.....+...- ...++++++.
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred hhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 2234457777777777776644333332100 2456666655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=2.2e-10 Score=101.82 Aligned_cols=163 Identities=14% Similarity=0.154 Sum_probs=77.9
Q ss_pred chhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCccccc--CCCCCcEEeCCC--Cccccc----
Q 048828 51 PRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIPDSLS--NASNLERLDLPG--NQFKGK---- 122 (367)
Q Consensus 51 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~--n~l~~~---- 122 (367)
...+..+|+|+.|+++++.-. .++. + ..++|++|++..|.+.......+. .+|+|++|+++. +...+.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 344455666666666655211 2222 1 256666666666655422222222 466666666532 111000
Q ss_pred -ccccc--cCCCCCCeEEcCCCcccCcCCCCCccccccCCCCCCcEEEcccCccccccChhhhh---hcccceEEEecCC
Q 048828 123 -VSIDF--SSLKNLWWLNLEQNNLGMGTANDLDFVTSLTNCSSLKSLSLYDNQFGGELPHSIAN---LSSTMIQFSIGGN 196 (367)
Q Consensus 123 -~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~l~l~~~ 196 (367)
....+ ..+|+|++|++.+|.+...... .......+++|++|+++.|.+.+.....+.. ..++|+.|+++.|
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~---~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVE---MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHH---HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHH---HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 00112 2467777777776665422111 1111124567777777777665433322221 1234777777777
Q ss_pred cccccCCccccCCCCCcEEEccCCc
Q 048828 197 QISGTIPPGIRNLVNLVALTMDSNQ 221 (367)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~n~ 221 (367)
.++......+...- ..+++++.++
T Consensus 318 ~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred cCCHHHHHHHHHHc-CCEEEecCCc
Confidence 66544333333210 3456666655
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=3.3e-09 Score=85.14 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=56.6
Q ss_pred cccCCCCCcEEEccCC-cccccc----cccccCccCCcEEEccCccccccC----CccccCCCCCCeEEccCCeeccc--
Q 048828 205 GIRNLVNLVALTMDSN-QLHGTI----PDVIGELKNLQVLFLFRNFLQGSI----PPSLGNLTKLADLALSFNNLQGN-- 273 (367)
Q Consensus 205 ~l~~~~~L~~L~l~~n-~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~----~~~l~~~~~L~~L~l~~n~i~~~-- 273 (367)
.+...+.|++|++++| .+.+.. ...+...++|++|+|++|.+.+.. ...+...++|+.|++++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555666666655 554321 223334455666666666554322 22233345566666666655532
Q ss_pred --cCcccccCCCCcEEEc--CCCcccCCcc----hhhhhhcccceeEeccCCeee
Q 048828 274 --IPSSLGNCQNLISFRA--SHNKLTGALP----YQLLSITTLSLYLDLSYNLLN 320 (367)
Q Consensus 274 --~~~~~~~~~~L~~L~l--~~n~i~~~~~----~~~~~~~~ll~~L~l~~n~i~ 320 (367)
+...+..+++|++|++ ++|.+..... ..+....++ ++|++++|.|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L-~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTL-LKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSC-CEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCc-CEEeccCCCCC
Confidence 2233444556666666 5566553322 222223444 66666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=7e-09 Score=83.23 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=8.4
Q ss_pred CCCCCCcEEEcccCccc
Q 048828 158 TNCSSLKSLSLYDNQFG 174 (367)
Q Consensus 158 ~~~~~L~~L~l~~~~~~ 174 (367)
...++|++|++++|.+.
T Consensus 62 ~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TTCCSCCEEECTTSCCC
T ss_pred HhCCCcCEEECcCCCCC
Confidence 33445555555555444
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=1.5e-08 Score=79.45 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=62.9
Q ss_pred CCCCCcEEEccCCcccccccccccCccCCcEEEccCcc-ccccCCccccCC----CCCCeEEccCCe-eccccCcccccC
Q 048828 208 NLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFRNF-LQGSIPPSLGNL----TKLADLALSFNN-LQGNIPSSLGNC 281 (367)
Q Consensus 208 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~----~~L~~L~l~~n~-i~~~~~~~~~~~ 281 (367)
.-.+|++|++++|.+++.....+.++++|+.|+|++|. +++..-..+..+ ++|+.|++++|. +++.....+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 33468888888888776666667788888888888884 665443444442 468888888884 776555667778
Q ss_pred CCCcEEEcCCCc-cc
Q 048828 282 QNLISFRASHNK-LT 295 (367)
Q Consensus 282 ~~L~~L~l~~n~-i~ 295 (367)
++|++|++++|+ ++
T Consensus 139 ~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCCEEEEESCTTCC
T ss_pred CCCCEEECCCCCCCC
Confidence 888888888885 44
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=1e-07 Score=74.71 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=59.8
Q ss_pred CCCcEEEccCccccCCcchhccCCCCcceeeccccc-ccccCChhhhhCC----CCccEEEccCCc-ceeeCcccccCCC
Q 048828 34 RNLVYLNVAENQFSGMFPRWICNISSLELIYLTVNR-FSGSLPFDILVNL----PNLKELGVGGNN-FVGSIPDSLSNAS 107 (367)
Q Consensus 34 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~l~~l~ 107 (367)
..|++||+++|.++..--..+..+++|++|++++|. +++. ....++.+ ++|++|++++|. ++...-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 468888888888876666667788888888888885 5422 22223332 478899998875 6644444567788
Q ss_pred CCcEEeCCCCc
Q 048828 108 NLERLDLPGNQ 118 (367)
Q Consensus 108 ~L~~L~l~~n~ 118 (367)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999998885
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=5.9e-07 Score=75.75 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=58.3
Q ss_pred CCCCCCcEEEccCccccC--CcchhccCCCCcceeecccccccccCChhhhhCCCCccEEEccCCcceeeCc-------c
Q 048828 31 GLLRNLVYLNVAENQFSG--MFPRWICNISSLELIYLTVNRFSGSLPFDILVNLPNLKELGVGGNNFVGSIP-------D 101 (367)
Q Consensus 31 ~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~ 101 (367)
.++++|++|++++|.+.+ .++..+..+++|+.|+|++|.+.+.-....+..+ +|++|++++|.+....| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 457888888888888875 3346667788888999988888732122223334 88899998888764443 2
Q ss_pred cccCCCCCcEEeC
Q 048828 102 SLSNASNLERLDL 114 (367)
Q Consensus 102 ~l~~l~~L~~L~l 114 (367)
.+..+|+|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3567888888863
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1.2e-07 Score=79.95 Aligned_cols=106 Identities=27% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCCCCcE--EEccCcccc---CCcchhccCCCCcceeecccccccccCCh--hhhhCCCCccEEEccCCcceee-Cccc
Q 048828 31 GLLRNLVY--LNVAENQFS---GMFPRWICNISSLELIYLTVNRFSGSLPF--DILVNLPNLKELGVGGNNFVGS-IPDS 102 (367)
Q Consensus 31 ~~~~~L~~--L~l~~~~i~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~~~ 102 (367)
...+.|+. ++++.|... ..+.....++++|+.|++++|.+. .++. ..+..+++|+.|+|++|.+... ....
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 33444554 556666432 222333356899999999999998 4331 4456899999999999998843 1122
Q ss_pred ccCCCCCcEEeCCCCccccccc-------ccccCCCCCCeEEc
Q 048828 103 LSNASNLERLDLPGNQFKGKVS-------IDFSSLKNLWWLNL 138 (367)
Q Consensus 103 l~~l~~L~~L~l~~n~l~~~~~-------~~l~~~~~L~~L~l 138 (367)
+..+ +|++|++++|.+.+..+ ..+..+|+|+.|+=
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3444 99999999999875433 23678899998853
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.92 E-value=4.2e-06 Score=66.77 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=17.5
Q ss_pred CccCCcEEEccCccccccCC----ccccCCCCCCeEEccCCeec
Q 048828 232 ELKNLQVLFLFRNFLQGSIP----PSLGNLTKLADLALSFNNLQ 271 (367)
Q Consensus 232 ~~~~L~~L~l~~~~i~~~~~----~~l~~~~~L~~L~l~~n~i~ 271 (367)
..++|+.|+|++|.+.+... ..+...+.|+.|+|++|.|.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33445555555554443221 22223344555555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=1.1e-05 Score=64.34 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=6.6
Q ss_pred CCCCCCeEEccCCe
Q 048828 256 NLTKLADLALSFNN 269 (367)
Q Consensus 256 ~~~~L~~L~l~~n~ 269 (367)
..++|+.|+++.+.
T Consensus 155 ~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 155 ENESLLRVGISFAS 168 (197)
T ss_dssp HCSSCCEEECCCCC
T ss_pred hCCCcCeEeccCCC
Confidence 33455555554443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.44 E-value=0.0066 Score=44.94 Aligned_cols=56 Identities=23% Similarity=0.205 Sum_probs=31.0
Q ss_pred EEEccCcccc-ccCCccccCCCCCCeEEccCCeeccccCcccccCCCCcEEEcCCCccc
Q 048828 238 VLFLFRNFLQ-GSIPPSLGNLTKLADLALSFNNLQGNIPSSLGNCQNLISFRASHNKLT 295 (367)
Q Consensus 238 ~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~i~ 295 (367)
.++-+++.++ ..+|..+. ++|+.|+|++|.++...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 12333222 35666666666666544555666666666666666554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.15 E-value=0.0076 Score=44.59 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=47.2
Q ss_pred CeEEccCCeec-cccCcccccCCCCcEEEcCCCcccCCcchhhhhhcccceeEeccCCeeeeccCccccC
Q 048828 261 ADLALSFNNLQ-GNIPSSLGNCQNLISFRASHNKLTGALPYQLLSITTLSLYLDLSYNLLNGSLPLQMFT 329 (367)
Q Consensus 261 ~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~ll~~L~l~~n~i~~~~p~~~~~ 329 (367)
..++-+++.++ ..+|..+ .++++.|+|++|+|+..-+..|..++.+ ++|+|.+|++.++....++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L-~~L~L~~NP~~CdC~l~~l~ 77 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPAL-RTAHLGANPWRCDCRLVPLR 77 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTC-CEEECCSSCCBCSGGGHHHH
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhcccc-CEEEecCCCeeccCccHHHH
Confidence 47788888776 2344332 3579999999999994444455566666 99999999998877654433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.41 E-value=1.7 Score=30.01 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=16.6
Q ss_pred CChhhhhCCCCccEEEccCCcceeeCcccccCCCCCcEEeCC
Q 048828 74 LPFDILVNLPNLKELGVGGNNFVGSIPDSLSNASNLERLDLP 115 (367)
Q Consensus 74 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 115 (367)
+....|.++.+|+.+.|-.+ ++.+...+|.+|.+|+.+.+.
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33334444444444444432 122333344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.68 E-value=4.8 Score=27.68 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=20.5
Q ss_pred cCCccccCCCCCcEEEccCCcccccccccccCccCCcEEEccC
Q 048828 201 TIPPGIRNLVNLVALTMDSNQLHGTIPDVIGELKNLQVLFLFR 243 (367)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 243 (367)
+...+|..|.+|+++.|..+ ++......|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445555555555555543 2223344455555555555544
Done!