BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048829
(976 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 3/169 (1%)
Query: 112 PSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLH 171
P + +L L+ ++ + ELPD+ L L L+ +R LP S+ L L
Sbjct: 94 PQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLR 153
Query: 172 SLLLEDCDRLKKLCADMGNL-IKLHHLNNSNTDSLEETPLGIGKL-TCLQTLCNFVVGKD 229
L + C L +L + + H N SL GI L + L N K
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI 213
Query: 230 SGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLR 278
S LS L +H LE L + N G+ LK L+L+
Sbjct: 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILK 261
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 66/162 (40%), Gaps = 18/162 (11%)
Query: 665 LENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGC--PKLESIAERLDNN 722
L L+I +CP LT ELP L S + + L + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 723 TSLETINISNCENLKILSSGLHXXXXXXXXXXXXXXXXESFPE--GGLPCAKLRRLEIYD 780
+L+++ I N L L +H ++P GG A L+RL + D
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 781 CKRLEALPKGLHNLTSLQQLTIIG----GELPSLEEDGLPTN 818
C L LP +H LT L++L + G LPSL LP N
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 535 RLEYLRLRYCEGLVKLPQXXXXXXXXKEIEIYKCSSLVSFP-EVALPSKLKKIEIRECDA 593
+LE L LR C L P K + + CS+L++ P ++ ++L+K+++R C
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289
Query: 594 LKSLP 598
L LP
Sbjct: 290 LSRLP 294
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 126 VFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLC 185
LR + + PD L +L++ + + LP++ + L +L L + L+ L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALP 143
Query: 186 ADMGNLIKLHHLNNSNTDSLEETP 209
A + +L +L L+ L E P
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 40/281 (14%)
Query: 470 WESATGHLGSQNSVVCRDTSN--QSHDGLLQDICSLK--SLEIRGCPKLQSLVAEEEKDQ 525
W SA S N + T ++ LL+D +LE+R P
Sbjct: 46 WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL------------ 93
Query: 526 QQQLCELSCRLEYLRLRYCE--GLVKLPQXXXXXXXXKEIEIYKCSSLVSFP-EVALPSK 582
Q + + RL +L+ + GL +LP + + + + + L + P +A ++
Sbjct: 94 -PQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 583 LKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLT--YIAEVQLPLSLKRLDIQRC 640
L+++ IR C L LPEP + T +S E + + SL + LP S+ L +
Sbjct: 152 LRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 641 NKIRTLTVEEGIQXXXXXXXXXXLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPS 700
KIR + LE L + C +L +N P + G P
Sbjct: 211 LKIRN----SPLSALGPAIHHLPKLEELDLRGCTAL-----RNYPP-----IFGGRAP-- 254
Query: 701 VKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSS 741
+K L + C L ++ + T LE +++ C NL L S
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHS 172
+I + K L L G ++ELP + +L LR L+LS + +LP + + L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 173 LLLEDCDRLKKLCADMGNLIKLHHL 197
D + + L + GNL L L
Sbjct: 298 FYFFD-NMVTTLPWEFGNLCNLQFL 321
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 91 IQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYL 150
++HL + L+ + + S+L +LL+LQ +++ G P + L YLR L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVL 301
Query: 151 NLSGTNIRTLPESV-NKLYNLHSLLLE 176
N+SG + TL ESV + + NL +L+L+
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 7 DLGLEIFKELHSRSFFQQSSNDASRFVM--------HDLINDLAHWAAGEIYFTMEYTSE 58
DL +F + F+QS A+ F+ +D + H A + F + +
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 59 VNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKL 118
+N+ + R+ I GG +D FL D S L+ I ++
Sbjct: 604 LNRLST-----RNPCNITSRVYGGHT-SPTFDNNGSMMFL-----DMSYNMLSGYIPKEI 652
Query: 119 LKLQRLRVFSLRGYHIS-ELPDSVGDLRYLRYLNLSGTNIRT-LPESVNKLYNLHSLLLE 176
+ L + +L IS +PD VGDLR L L+LS + +P++++ L L + L
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 177 DCDRLKKLCADMG 189
+ + L +MG
Sbjct: 713 N-NNLSGPIPEMG 724
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 7 DLGLEIFKELHSRSFFQQSSNDASRFVM--------HDLINDLAHWAAGEIYFTMEYTSE 58
DL +F + F+QS A+ F+ +D + H A + F + +
Sbjct: 541 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 59 VNKQQSFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKL 118
+N+ + R+ I GG +D FL D S L+ I ++
Sbjct: 601 LNRLST-----RNPCNITSRVYGGHT-SPTFDNNGSMMFL-----DMSYNMLSGYIPKEI 649
Query: 119 LKLQRLRVFSLRGYHIS-ELPDSVGDLRYLRYLNLSGTNIRT-LPESVNKLYNLHSLLLE 176
+ L + +L IS +PD VGDLR L L+LS + +P++++ L L + L
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 177 DCDRLKKLCADMG 189
+ + L +MG
Sbjct: 710 N-NNLSGPIPEMG 721
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 107 PGYLAPSILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPESVN 165
PG +P ++LR L ISEL PD+ LR L L L G I LP+S+
Sbjct: 49 PGAFSP--------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
Query: 166 KLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLN 198
+ LLL + +++ L D LH+LN
Sbjct: 101 EGLFSLQLLLLNANKINXLRVDA--FQDLHNLN 131
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 322 TWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVSRVKRLG-SEFYGDDSPI 380
WL SLF+ LV L+ + G L + G + S+ H+ R + R RL YG
Sbjct: 257 AWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVR-RALLRHPRLHLVNGYGPTENT 315
Query: 381 PFPCLETLRFEDLQEWEVWISHGSGQGVEG 410
F C + +DL+E ++ I G+ + G
Sbjct: 316 TFTCCHVVTDDDLEEDDIPI----GKAIAG 341
>pdb|2Z84|A Chain A, Insights From Crystal And Solution Structures Of Mouse
Ufsp1
Length = 218
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 161 PESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQT 220
P ++ L ++H L C +L G+ + H+ D L++ G G T LQT
Sbjct: 1 PSTLELLKDVHLGLPVPCHDPARLALLSGHYLYYHY----GCDGLDDRGWGCGYRT-LQT 55
Query: 221 LCNFVVGKDSGSGLSELKLLMHLRGALE 248
LC++ G+ SG + L L+GALE
Sbjct: 56 LCSWPGGQSSG-----VPGLPALQGALE 78
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 107 PGYLAPSILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPESV 164
PG +P ++LR L ISEL PD+ LR L L L G I LP+S+
Sbjct: 49 PGAFSP--------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|3GOC|A Chain A, Crystal Structure Of The Endonuclease V (Sav1684) From
Streptomyces Avermitilis. Northeast Structural Genomics
Consortium Target Svr196
pdb|3GOC|B Chain B, Crystal Structure Of The Endonuclease V (Sav1684) From
Streptomyces Avermitilis. Northeast Structural Genomics
Consortium Target Svr196
Length = 237
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 672 SCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGC--PKLESIAERLDNNTSLETIN 729
S P + + + E+P L +L+ PP + V D YG P+ +A L T L TI
Sbjct: 81 SFPYVPGLLAFREIPTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIG 140
Query: 730 IS 731
++
Sbjct: 141 VA 142
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 121 LQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV-NKLYNLHSLLLEDCD 179
L +R +L G + ++ ++ +L L YL L+G +++LP V +KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 180 RLKKLCADM-GNLIKLHHLNNSNTDSLEETPLGI-GKLTCLQTL 221
+L+ L + L L +LN ++ + L+ P G+ KLT L L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTEL 162
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 138 PDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLK 182
P++ +L L+YL +S T I+ LP+ V+K+++L +LL+ D +
Sbjct: 97 PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNIN 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,532,535
Number of Sequences: 62578
Number of extensions: 1196691
Number of successful extensions: 2573
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2539
Number of HSP's gapped (non-prelim): 55
length of query: 976
length of database: 14,973,337
effective HSP length: 108
effective length of query: 868
effective length of database: 8,214,913
effective search space: 7130544484
effective search space used: 7130544484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)