Query 048829
Match_columns 976
No_of_seqs 663 out of 4520
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 13:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-40 2.4E-45 416.6 30.4 301 534-896 284-588 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.8E-40 1E-44 410.9 30.6 109 700-808 476-584 (968)
3 PLN03210 Resistant to P. syrin 100.0 4.3E-29 9.3E-34 310.8 29.9 204 13-221 472-686 (1153)
4 KOG4658 Apoptotic ATPase [Sign 100.0 7E-29 1.5E-33 290.9 13.3 390 1-444 448-856 (889)
5 KOG0472 Leucine-rich repeat pr 99.9 7.5E-31 1.6E-35 261.2 -12.9 283 555-915 249-540 (565)
6 KOG0618 Serine/threonine phosp 99.9 4.1E-29 8.8E-34 274.7 -7.1 264 532-854 239-509 (1081)
7 KOG0472 Leucine-rich repeat pr 99.9 5.9E-30 1.3E-34 254.8 -13.0 233 113-430 59-291 (565)
8 KOG4194 Membrane glycoprotein 99.9 1E-26 2.3E-31 242.3 4.5 363 534-935 78-448 (873)
9 KOG4194 Membrane glycoprotein 99.9 4.7E-26 1E-30 237.5 5.3 360 480-912 80-448 (873)
10 KOG0618 Serine/threonine phosp 99.9 1.6E-26 3.5E-31 254.5 -3.9 105 115-221 37-142 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3E-23 6.4E-28 258.7 24.1 313 533-920 588-910 (1153)
12 KOG0444 Cytoskeletal regulator 99.9 3.9E-25 8.5E-30 231.9 -7.0 330 493-921 47-380 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 3.5E-24 7.6E-29 224.8 -4.3 354 534-956 32-395 (1255)
14 PRK15387 E3 ubiquitin-protein 99.7 9E-16 1.9E-20 176.8 16.7 214 534-829 201-414 (788)
15 PRK15387 E3 ubiquitin-protein 99.6 1.6E-15 3.5E-20 174.7 15.7 254 560-914 203-456 (788)
16 KOG4237 Extracellular matrix p 99.6 6.5E-17 1.4E-21 162.3 -1.8 96 127-223 72-171 (498)
17 KOG4237 Extracellular matrix p 99.6 1E-16 2.2E-21 160.9 -3.8 115 111-227 79-199 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 3.9E-14 8.4E-19 164.8 11.9 203 558-830 178-380 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.5 3.3E-14 7.1E-19 168.0 10.4 150 86-244 517-671 (889)
20 PRK15370 E3 ubiquitin-protein 99.5 9.4E-14 2E-18 161.6 10.7 247 534-854 178-424 (754)
21 KOG0617 Ras suppressor protein 99.5 9.3E-16 2E-20 135.8 -4.8 128 86-221 27-155 (264)
22 KOG0617 Ras suppressor protein 99.5 2.9E-15 6.4E-20 132.6 -3.1 145 68-223 34-180 (264)
23 cd00116 LRR_RI Leucine-rich re 99.2 3.6E-12 7.8E-17 138.7 -1.1 35 699-733 81-118 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 2.7E-12 5.8E-17 139.7 -2.7 210 699-914 51-289 (319)
25 KOG4341 F-box protein containi 99.0 2.6E-11 5.6E-16 123.8 -4.1 182 534-755 268-460 (483)
26 KOG4341 F-box protein containi 99.0 2.2E-11 4.8E-16 124.3 -5.1 258 498-803 187-460 (483)
27 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 103.5 5.5 131 87-228 14-152 (175)
28 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.1E-14 111.9 1.3 152 699-851 197-360 (505)
29 PF14580 LRR_9: Leucine-rich r 98.8 3.3E-09 7.1E-14 100.2 2.8 104 120-227 17-124 (175)
30 PRK15386 type III secretion pr 98.7 6.9E-08 1.5E-12 102.4 11.3 96 717-826 46-141 (426)
31 COG4886 Leucine-rich repeat (L 98.7 1.6E-08 3.4E-13 113.3 5.7 106 116-223 110-216 (394)
32 COG4886 Leucine-rich repeat (L 98.6 2.5E-08 5.5E-13 111.6 5.7 192 703-916 97-290 (394)
33 KOG3207 Beta-tubulin folding c 98.6 5.4E-09 1.2E-13 107.7 0.2 241 715-976 113-373 (505)
34 KOG0532 Leucine-rich repeat (L 98.6 2.5E-09 5.4E-14 113.7 -3.4 106 113-221 89-194 (722)
35 KOG1259 Nischarin, modulator o 98.6 1.2E-08 2.6E-13 99.6 1.4 127 770-915 283-411 (490)
36 KOG0532 Leucine-rich repeat (L 98.6 2.1E-09 4.6E-14 114.1 -5.1 189 702-913 78-270 (722)
37 PF13855 LRR_8: Leucine rich r 98.6 5.9E-08 1.3E-12 75.0 4.2 57 122-178 1-59 (61)
38 KOG1259 Nischarin, modulator o 98.5 3E-08 6.5E-13 96.9 0.6 100 120-222 282-405 (490)
39 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.3E-12 71.5 3.3 58 145-203 1-60 (61)
40 PLN03150 hypothetical protein; 98.3 5.8E-07 1.2E-11 105.2 6.6 93 123-215 419-513 (623)
41 PRK15386 type III secretion pr 98.3 1.7E-06 3.7E-11 92.0 9.3 32 747-781 156-187 (426)
42 KOG1909 Ran GTPase-activating 98.3 9E-08 2E-12 96.3 -1.1 231 699-938 30-310 (382)
43 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 101.9 7.3 106 700-805 419-525 (623)
44 PF12799 LRR_4: Leucine Rich r 98.2 1.2E-06 2.6E-11 61.6 3.4 38 123-160 2-39 (44)
45 KOG2120 SCF ubiquitin ligase, 98.2 1.7E-08 3.6E-13 98.7 -8.5 83 700-782 186-271 (419)
46 KOG2120 SCF ubiquitin ligase, 98.1 2E-07 4.2E-12 91.4 -4.2 59 699-757 313-373 (419)
47 KOG0531 Protein phosphatase 1, 98.1 8.9E-07 1.9E-11 99.1 0.2 106 114-223 87-193 (414)
48 KOG0531 Protein phosphatase 1, 98.0 9.5E-07 2.1E-11 98.9 0.1 189 699-912 95-286 (414)
49 PF12799 LRR_4: Leucine Rich r 98.0 4.2E-06 9.1E-11 58.8 3.1 40 145-185 1-40 (44)
50 KOG1909 Ran GTPase-activating 98.0 7.4E-07 1.6E-11 89.9 -1.6 137 771-915 157-310 (382)
51 KOG4579 Leucine-rich repeat (L 97.9 2.4E-06 5.2E-11 74.0 -0.1 92 118-211 49-141 (177)
52 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.4E-10 79.4 3.3 207 701-919 47-265 (418)
53 KOG4579 Leucine-rich repeat (L 97.8 3.4E-06 7.3E-11 73.1 -1.4 101 120-222 25-129 (177)
54 KOG1859 Leucine-rich repeat pr 97.7 1.8E-06 4E-11 94.9 -4.9 122 797-938 166-291 (1096)
55 KOG3665 ZYG-1-like serine/thre 97.5 6.2E-05 1.4E-09 87.8 4.2 60 117-177 167-229 (699)
56 KOG1859 Leucine-rich repeat pr 97.5 4.1E-06 8.8E-11 92.2 -5.2 119 120-243 162-281 (1096)
57 KOG2982 Uncharacterized conser 97.5 8.7E-05 1.9E-09 73.3 3.5 85 531-617 68-156 (418)
58 KOG1644 U2-associated snRNP A' 97.3 0.00031 6.8E-09 65.7 4.8 105 120-227 40-151 (233)
59 KOG3665 ZYG-1-like serine/thre 97.2 0.00017 3.7E-09 84.3 2.8 76 145-223 122-202 (699)
60 KOG1947 Leucine rich repeat pr 97.2 4.9E-05 1.1E-09 88.1 -1.9 35 556-590 186-223 (482)
61 KOG1947 Leucine rich repeat pr 97.1 5.7E-05 1.2E-09 87.6 -2.1 64 580-643 242-308 (482)
62 COG5238 RNA1 Ran GTPase-activa 96.8 0.001 2.2E-08 65.2 3.1 209 698-914 29-283 (388)
63 COG5238 RNA1 Ran GTPase-activa 96.7 0.0017 3.6E-08 63.7 4.1 95 114-209 22-136 (388)
64 PF00560 LRR_1: Leucine Rich R 96.5 0.0011 2.3E-08 38.6 0.8 18 147-164 2-19 (22)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.6E-08 64.0 2.4 59 120-178 63-126 (260)
66 KOG1644 U2-associated snRNP A' 96.4 0.0039 8.4E-08 58.7 4.3 88 115-203 57-151 (233)
67 PF00560 LRR_1: Leucine Rich R 96.1 0.0032 7E-08 36.5 1.4 22 123-144 1-22 (22)
68 KOG2123 Uncharacterized conser 96.0 0.00087 1.9E-08 65.8 -2.1 59 120-179 39-99 (388)
69 KOG2123 Uncharacterized conser 96.0 0.00069 1.5E-08 66.5 -2.8 101 120-223 17-124 (388)
70 KOG2739 Leucine-rich acidic nu 95.8 0.0071 1.5E-07 59.7 3.2 106 120-228 41-155 (260)
71 KOG0473 Leucine-rich repeat pr 95.4 0.00093 2E-08 63.8 -4.4 86 117-203 37-122 (326)
72 PF13306 LRR_5: Leucine rich r 95.3 0.041 8.8E-07 50.1 6.4 117 87-218 7-128 (129)
73 PF13504 LRR_7: Leucine rich r 94.3 0.024 5.3E-07 30.4 1.2 15 146-160 2-16 (17)
74 KOG0473 Leucine-rich repeat pr 93.6 0.0054 1.2E-07 58.8 -3.8 87 134-222 30-117 (326)
75 PF13504 LRR_7: Leucine rich r 93.6 0.046 1E-06 29.3 1.4 17 122-138 1-17 (17)
76 PF13306 LRR_5: Leucine rich r 93.5 0.16 3.5E-06 46.1 6.0 102 113-221 2-108 (129)
77 KOG3864 Uncharacterized conser 91.8 0.021 4.6E-07 54.0 -2.4 88 818-917 102-190 (221)
78 KOG3864 Uncharacterized conser 91.6 0.041 8.8E-07 52.1 -0.7 81 700-780 102-185 (221)
79 smart00369 LRR_TYP Leucine-ric 91.6 0.16 3.4E-06 30.9 2.1 20 144-163 1-20 (26)
80 smart00370 LRR Leucine-rich re 91.6 0.16 3.4E-06 30.9 2.1 20 144-163 1-20 (26)
81 smart00369 LRR_TYP Leucine-ric 85.9 0.53 1.1E-05 28.5 1.6 21 121-141 1-21 (26)
82 smart00370 LRR Leucine-rich re 85.9 0.53 1.1E-05 28.5 1.6 21 121-141 1-21 (26)
83 smart00365 LRR_SD22 Leucine-ri 75.7 2.1 4.6E-05 25.9 1.6 17 144-160 1-17 (26)
84 smart00364 LRR_BAC Leucine-ric 74.5 2 4.3E-05 26.0 1.2 17 146-162 3-19 (26)
85 smart00367 LRR_CC Leucine-rich 72.7 2.4 5.3E-05 25.6 1.4 15 903-917 2-16 (26)
86 PF13516 LRR_6: Leucine Rich r 57.8 5 0.00011 23.6 0.8 20 699-718 2-21 (24)
87 PF14162 YozD: YozD-like prote 57.2 11 0.00023 26.7 2.3 22 4-25 9-30 (57)
88 smart00368 LRR_RI Leucine rich 53.2 10 0.00022 23.4 1.6 14 145-158 2-15 (28)
89 KOG4308 LRR-containing protein 49.1 0.46 1E-05 53.5 -8.5 156 699-854 144-327 (478)
90 PF05725 FNIP: FNIP Repeat; I 42.9 32 0.00069 24.0 3.0 32 903-935 12-43 (44)
91 KOG3763 mRNA export factor TAP 22.7 38 0.00083 38.1 1.0 16 772-787 271-286 (585)
92 KOG3763 mRNA export factor TAP 20.6 45 0.00098 37.5 1.0 65 699-763 218-286 (585)
93 COG3432 Predicted transcriptio 20.5 1.4E+02 0.0031 25.1 3.6 36 6-41 45-81 (95)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-40 Score=416.59 Aligned_cols=301 Identities=16% Similarity=0.131 Sum_probs=174.0
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEIL 612 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 612 (976)
++|+.|++++|.....+|..+..+++|+.|++++|.....+|. ...+++|+.|++++|.....+|.... .+++|+.|
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~~~~L~~L 361 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--KHNNLTVL 361 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh--CCCCCcEE
Confidence 5777777777777777887888888888888888544444443 34467788888888775445554433 56677777
Q ss_pred EEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccc
Q 048829 613 KIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES 691 (976)
Q Consensus 613 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 691 (976)
++++|.....++.. ....+|+.|++++|...+.+ |..+..
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~--p~~~~~------------------------------------- 402 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI--PKSLGA------------------------------------- 402 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC--CHHHhC-------------------------------------
Confidence 77766443333332 22344555555555432222 111111
Q ss_pred ccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCC
Q 048829 692 LEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCA 771 (976)
Q Consensus 692 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (976)
+ ++|+.|++++|++.+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+ ..+
T Consensus 403 -----~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~ 475 (968)
T PLN00113 403 -----C-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSK 475 (968)
T ss_pred -----C-CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccc
Confidence 0 556666666666666666666666667777776665555556555666667777777665555555432 345
Q ss_pred CccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829 772 KLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY 849 (976)
Q Consensus 772 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 849 (976)
+|+.|++++|...+.+|..+.++++|++|++++|.+....+. ..+++|++|++++|.+....+ ..+..+++|+.
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~ 551 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQ 551 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC----hhHhCcccCCE
Confidence 666667766666566666666666666666666666532211 234455555555555554444 23455555555
Q ss_pred EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcccc
Q 048829 850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLS 896 (976)
Q Consensus 850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 896 (976)
|++++ |...+.+|... ..+++|+.|++++|+..+.+|
T Consensus 552 L~Ls~-N~l~~~~p~~l---------~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQ-NQLSGEIPKNL---------GNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCC-CcccccCChhH---------hcCcccCEEeccCCcceeeCC
Confidence 55555 33334444433 244555555555544444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.8e-40 Score=410.92 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=58.2
Q ss_pred CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829 700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY 779 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (976)
+|+.|++++|++.+.+|..+.++++|++|++++|...+.+|..+.++++|++|++++|...+.+|..+..+++|+.|+++
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 45555555555555555555555555555555554444555555555555555555554444455545555555555555
Q ss_pred CCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829 780 DCKRLEALPKGLHNLTSLQQLTIIGGELP 808 (976)
Q Consensus 780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~ 808 (976)
+|...+.+|..+..+++|+.|++++|.+.
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCcccccCChhHhcCcccCEEeccCCcce
Confidence 55555555555555555555555554443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=4.3e-29 Score=310.78 Aligned_cols=204 Identities=18% Similarity=0.193 Sum_probs=132.0
Q ss_pred HHHHHhCCCceeecCCCCcEEEchhHHHHHHHHhccce-------EEEecccc--cccccccccceeEEEeecccccCCc
Q 048829 13 FKELHSRSFFQQSSNDASRFVMHDLINDLAHWAAGEIY-------FTMEYTSE--VNKQQSFSRYLRHLSYIPEYYVGGK 83 (976)
Q Consensus 13 ~~~L~~r~l~~~~~~~~~~~~mHDlv~dla~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~r~ls~~~~~~~~~~ 83 (976)
++.|+++||++... ..++|||++||||+++++++. +.+..... .........+++++++.........
T Consensus 472 l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~ 548 (1153)
T PLN03210 472 LKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH 548 (1153)
T ss_pred hHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence 88999999998764 469999999999999987653 22222100 0001122356777776554332211
Q ss_pred -ccccccCCCCccEeccccccCCCCCCCccccccccccC-CcccEEEccCCccccccccccCCCcccEEecCCCCccccc
Q 048829 84 -RFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKL-QRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP 161 (976)
Q Consensus 84 -~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp 161 (976)
...+|.++++||.|.+..............+|.++..+ ..||+|++.++.+..+|..| ...+|++|++++|.+..+|
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc
Confidence 12346677888887665432100111223455555533 46888888888777777776 4678888888888887787
Q ss_pred hhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCcee
Q 048829 162 ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221 (976)
Q Consensus 162 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 221 (976)
..+..+++|++|+|++|+.+..+| .++.+++|++|++++|..+..+|..++++++|+.|
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 777778888888888776677776 47777788888887776566666655555555544
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=7e-29 Score=290.90 Aligned_cols=390 Identities=28% Similarity=0.340 Sum_probs=246.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCceeec--CCCCcEEEchhHHHHHHHHhc-----cceEEEecc--cccccccccccceeE
Q 048829 1 REKTGEDLGLEIFKELHSRSFFQQSS--NDASRFVMHDLINDLAHWAAG-----EIYFTMEYT--SEVNKQQSFSRYLRH 71 (976)
Q Consensus 1 ~~~~~ed~g~~~~~~L~~r~l~~~~~--~~~~~~~mHDlv~dla~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ 71 (976)
+|++++|+|++|+.+||+|||++..+ +...+|+|||+|||||.|+|+ ++.+++..+ ....+....+..+||
T Consensus 448 ~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr 527 (889)
T KOG4658|consen 448 GGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRR 527 (889)
T ss_pred cccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeE
Confidence 37899999999999999999999876 466899999999999999999 565554432 111123345678999
Q ss_pred EEeecccccCCcccccccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCc-cccccccccCCCcccE
Q 048829 72 LSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYH-ISELPDSVGDLRYLRY 149 (976)
Q Consensus 72 ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~-i~~lp~~~~~L~~L~~ 149 (976)
++++.+.. .....-..+++|+||.+..+.. -...++..|| .++.||||||++|. +..+|.+|+.|.+|||
T Consensus 528 ~s~~~~~~---~~~~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 528 MSLMNNKI---EHIAGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred EEEeccch---hhccCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 99998765 3345556778999999988742 1356788888 99999999999876 7899999999999999
Q ss_pred EecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCceecceEecCC
Q 048829 150 LNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKD 229 (976)
Q Consensus 150 L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~ 229 (976)
|+|+++.|..+|..+++|+.|.+||+.++..+..+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.....
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecc
Confidence 999999999999999999999999999977777777667789999999998765 2222233666667777655555443
Q ss_pred CCCCchhhhcccccc---CceEEeecCCCCChhhhhhhccCCCCCCceEEEEEccCCCCCCChhhhhHhhhccCCC---C
Q 048829 230 SGSGLSELKLLMHLR---GALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLK---P 303 (976)
Q Consensus 230 ~~~~~~~L~~L~~L~---~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~---~ 303 (976)
+...+..+..+..|+ ..+.+.. .........+..+.+|+.|.+..+...+... ....... .
T Consensus 679 s~~~~e~l~~~~~L~~~~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~--------~~~~~~~~~~~ 745 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSLLQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVI--------EWEESLIVLLC 745 (889)
T ss_pred hhHhHhhhhhhHHHHHHhHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhc--------ccccccchhhh
Confidence 332223333333333 1111110 1122223345556666666666544321100 0000000 1
Q ss_pred CCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCCC-CCCCCCCCCceEEEeCCCCceeeCccccCCCCCCCC
Q 048829 304 HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTAL-PSVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPF 382 (976)
Q Consensus 304 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 382 (976)
++++..+.+........+.|... .++|+.|.+..|...+.+ |....+..++.+.+ .|
T Consensus 746 f~~l~~~~~~~~~~~r~l~~~~f--~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~--------------------~f 803 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTWLLF--APHLTSLSLVSCRLLEDIIPKLKALLELKELIL--------------------PF 803 (889)
T ss_pred HHHHHHHHhhccccccccchhhc--cCcccEEEEecccccccCCCHHHHhhhcccEEe--------------------cc
Confidence 22333444444444444554432 456666666666544332 23333333333221 14
Q ss_pred CCccee-ecccccccccccccCCCCCccCCcccceeecccCcccccCCCCCCCCcceEEEecc
Q 048829 383 PCLETL-RFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGC 444 (976)
Q Consensus 383 ~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~~ 444 (976)
.+++.+ .+.+.+.+....... -.++.|+.+.+..||++. . +|.+.++.+.+|
T Consensus 804 ~~~~~l~~~~~l~~l~~i~~~~-----l~~~~l~~~~ve~~p~l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 804 NKLEGLRMLCSLGGLPQLYWLP-----LSFLKLEELIVEECPKLG-K----LPLLSTLTIVGC 856 (889)
T ss_pred cccccceeeecCCCCceeEecc-----cCccchhheehhcCcccc-c----Cccccccceecc
Confidence 444444 344444444333222 235557777777777775 3 344555666665
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=7.5e-31 Score=261.23 Aligned_cols=283 Identities=21% Similarity=0.234 Sum_probs=175.9
Q ss_pred CCCCCccEEEeecCCCCCCCCCcC-CCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcc---cccc---c
Q 048829 555 LSLSSLKEIEIYKCSSLVSFPEVA-LPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTY---IAEV---Q 627 (976)
Q Consensus 555 ~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~---~~~~---~ 627 (976)
..++++..||+.+ ++++++|... .+.+|+.|++++|. ++.+|.... ++ .|+.|.+.+|+.-+. +-.. .
T Consensus 249 ~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLg--nl-hL~~L~leGNPlrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 249 KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLG--NL-HLKFLALEGNPLRTIRREIISKGTQE 323 (565)
T ss_pred cccccceeeeccc-cccccCchHHHHhhhhhhhcccCCc-cccCCcccc--cc-eeeehhhcCCchHHHHHHHHcccHHH
Confidence 3678888999998 8999988744 47789999999888 888887665 66 788888888763221 1111 1
Q ss_pred CCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEc
Q 048829 628 LPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVY 707 (976)
Q Consensus 628 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 707 (976)
.+..|+.= .-|..+. .+++.... .. . .+...++.. ...-+.+.|+++
T Consensus 324 vLKyLrs~--~~~dglS---~se~~~e~---~~---t---------------~~~~~~~~~-------~~~i~tkiL~~s 370 (565)
T KOG0472|consen 324 VLKYLRSK--IKDDGLS---QSEGGTET---AM---T---------------LPSESFPDI-------YAIITTKILDVS 370 (565)
T ss_pred HHHHHHHh--hccCCCC---CCcccccc---cC---C---------------CCCCcccch-------hhhhhhhhhccc
Confidence 11111110 0000000 00000000 00 0 000011100 111456777777
Q ss_pred CCCcchhhhhhhcCC--CCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcc
Q 048829 708 GCPKLESIAERLDNN--TSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLE 785 (976)
Q Consensus 708 ~~~~~~~~~~~~~~l--~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 785 (976)
+-+.+....+.|..- .-....+++. +.+..+|..+..+..+.+.-+..+..+.-+|.....+++|..|++++|. +.
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln 448 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LN 448 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hh
Confidence 765544333333221 1266778888 5677788877777777666666665666666667778888888888877 88
Q ss_pred cCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCC
Q 048829 786 ALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPE 865 (976)
Q Consensus 786 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~ 865 (976)
.+|..++.+..|+.|+++.|+++.+|.. +..+..|+.+-.++ +.++.++..
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~NrFr~lP~~---------------------------~y~lq~lEtllas~--nqi~~vd~~ 499 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFNRFRMLPEC---------------------------LYELQTLETLLASN--NQIGSVDPS 499 (565)
T ss_pred hcchhhhhhhhhheecccccccccchHH---------------------------HhhHHHHHHHHhcc--ccccccChH
Confidence 8888888888888888888888877642 22333444444443 456666655
Q ss_pred CcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCC
Q 048829 866 PEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPK 915 (976)
Q Consensus 866 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 915 (976)
+ +..+.+|.+||+.+ +.+..+|+.++++++|++|++.++|.
T Consensus 500 ~--------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 500 G--------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred H--------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 3 25777888888887 78888888899999999999998663
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=4.1e-29 Score=274.72 Aligned_cols=264 Identities=21% Similarity=0.290 Sum_probs=188.4
Q ss_pred ccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCc-CCCCCCcEEEEccCCCCCCCCCccccCCCCccc
Q 048829 532 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEV-ALPSKLKKIEIRECDALKSLPEPWMCDTSSSLE 610 (976)
Q Consensus 532 ~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 610 (976)
.|.+|+.+++++++ ...+|.++..+.+|+.+++.+ +.++.+|.. ....+|+.|.+..|. ++.+|.... .+.+|+
T Consensus 239 ~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le--~~~sL~ 313 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNN-LSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLE--GLKSLR 313 (1081)
T ss_pred ccccceeeecchhh-hhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCccc--ccceee
Confidence 34678888888754 455667888888888888877 666766653 336778888888877 777776543 677788
Q ss_pred EEEEecCCCCcccccccC---CCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccc
Q 048829 611 ILKIWDCHSLTYIAEVQL---PLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPA 687 (976)
Q Consensus 611 ~L~l~~~~~l~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 687 (976)
+|++..| .+..+|.... ..+|+.|..+.++ +... | + +
T Consensus 314 tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~l--p-----------------------~------~------- 353 (1081)
T KOG0618|consen 314 TLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNK-LSTL--P-----------------------S------Y------- 353 (1081)
T ss_pred eeeehhc-cccccchHHHhhhhHHHHHHhhhhcc-cccc--c-----------------------c------c-------
Confidence 8888775 3444443211 1123333333221 1111 0 0 0
Q ss_pred ccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccc-cccCCCCCcEEEccCCCCCCccCCC
Q 048829 688 TLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSS-GLHNLCQLQQIGIGGCGNLESFPEG 766 (976)
Q Consensus 688 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~ 766 (976)
-.+..+.|+.|.+.+|...+...+.+.++..|+.|++++ +.++++|+ .+.+++.|++|++++| .++.+|..
T Consensus 354 ------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~t 425 (1081)
T KOG0618|consen 354 ------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPDT 425 (1081)
T ss_pred ------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhHH
Confidence 011226799999999999999999999999999999999 56777754 5577999999999999 78889998
Q ss_pred CCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCccc-CCCC-CccceeeecCCCCccchhhhcCCccccc
Q 048829 767 GLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE-DGLP-TNLHSLRIEGNMGIWKSMIERGRGFHRF 844 (976)
Q Consensus 767 ~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l 844 (976)
...++.|++|...+|. +..+| .+..++.|+.+|++.|+++.+.. ...+ ++|++||++||......- ..+..+
T Consensus 426 va~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~----~~l~~l 499 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDH----KTLKVL 499 (1081)
T ss_pred HHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccch----hhhHHh
Confidence 8999999999999988 77888 88899999999999999987643 3455 899999999998644332 335555
Q ss_pred CcccEEEEec
Q 048829 845 SSLRYLLIRG 854 (976)
Q Consensus 845 ~~L~~L~l~~ 854 (976)
.++...++.-
T Consensus 500 ~~l~~~~i~~ 509 (1081)
T KOG0618|consen 500 KSLSQMDITL 509 (1081)
T ss_pred hhhhheeccc
Confidence 5555555543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=5.9e-30 Score=254.84 Aligned_cols=233 Identities=23% Similarity=0.306 Sum_probs=137.0
Q ss_pred ccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccc
Q 048829 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI 192 (976)
Q Consensus 113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 192 (976)
.+.+++-++..|.||++++|.+.++|.+++.+..++.|+.++|++.++|+.++.+..|+.|+.++ +.+.++|.+|+.+.
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~ 137 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLL 137 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHh
Confidence 34445556666777777777777777777777777777777777777777777777777777777 46677777777777
Q ss_pred cCceeecCCCCCccccccccCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhccCCCCCC
Q 048829 193 KLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNL 272 (976)
Q Consensus 193 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L 272 (976)
.|+.|+..+|+ +..+|.+++.+.+|..|..-... +
T Consensus 138 ~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~--------------------------------------------l 172 (565)
T KOG0472|consen 138 DLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK--------------------------------------------L 172 (565)
T ss_pred hhhhhhccccc-cccCchHHHHHHHHHHhhccccc--------------------------------------------h
Confidence 77777777666 67777666666655544211100 0
Q ss_pred ceEEEEEccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCCCCCCCCC
Q 048829 273 KELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQL 352 (976)
Q Consensus 273 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 352 (976)
+. ..+....+..|++|+...+..+.+|..++. +.+|..|++..|+ ...+|.|+++
T Consensus 173 ~~----------------------l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nk-i~~lPef~gc 227 (565)
T KOG0472|consen 173 KA----------------------LPENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNK-IRFLPEFPGC 227 (565)
T ss_pred hh----------------------CCHHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhcc-cccCCCCCcc
Confidence 00 000111134455555555556666666665 6777777777766 3456677777
Q ss_pred CCCceEEEeCCCCceeeCccccCCCCCCCCCCcceeecccccccccccccCCCCCccCCcccceeecccCcccccCCC
Q 048829 353 PSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFP 430 (976)
Q Consensus 353 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp 430 (976)
..|++|.++.| .++.+..+.... ++++..|++.+.. ..+.|+++.-+.+|++|+++++ .++ .+|
T Consensus 228 s~L~Elh~g~N-~i~~lpae~~~~-----L~~l~vLDLRdNk------lke~Pde~clLrsL~rLDlSNN-~is-~Lp 291 (565)
T KOG0472|consen 228 SLLKELHVGEN-QIEMLPAEHLKH-----LNSLLVLDLRDNK------LKEVPDEICLLRSLERLDLSNN-DIS-SLP 291 (565)
T ss_pred HHHHHHHhccc-HHHhhHHHHhcc-----cccceeeeccccc------cccCchHHHHhhhhhhhcccCC-ccc-cCC
Confidence 77777777543 444444333222 4555555555432 1122333455566666666666 454 455
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1e-26 Score=242.32 Aligned_cols=363 Identities=18% Similarity=0.213 Sum_probs=230.4
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCC-CCCcEEEEccCCCCCCCCCccccCCCCcccEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALP-SKLKKIEIRECDALKSLPEPWMCDTSSSLEIL 612 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 612 (976)
+.-+.|++++|......+..|.++++|+++++.. |.++.+|..+.. .+|+.|++.+|. +.++..... ..++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhhhh
Confidence 3444555555544444444555555555555555 555555554332 335555555554 444433322 345555555
Q ss_pred EEecCCCCcccccccCC--CCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccc
Q 048829 613 KIWDCHSLTYIAEVQLP--LSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLE 690 (976)
Q Consensus 613 ~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 690 (976)
+++.| .+..++...++ .++++|++++|. ++.+ ..+.+. .+.+|..|.++....- . ++..
T Consensus 155 DLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l--~~~~F~------~lnsL~tlkLsrNrit-t-Lp~r------- 215 (873)
T KOG4194|consen 155 DLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTL--ETGHFD------SLNSLLTLKLSRNRIT-T-LPQR------- 215 (873)
T ss_pred hhhhc-hhhcccCCCCCCCCCceEEeecccc-cccc--cccccc------ccchheeeecccCccc-c-cCHH-------
Confidence 55553 33334333222 245555555553 1211 110000 0012333333322110 0 1111
Q ss_pred cccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCC
Q 048829 691 SLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLP 769 (976)
Q Consensus 691 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 769 (976)
.+.++ +.|+.|+|..|.+-..-.-.|+++++|+.|.+..|+..+---..|..+.++++|+++.| .+..+.. +...
T Consensus 216 --~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfg 291 (873)
T KOG4194|consen 216 --SFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFG 291 (873)
T ss_pred --Hhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccc
Confidence 11122 67888888888776665667888888888888886544333566777889999999988 4554544 4567
Q ss_pred CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC--CCccceeeecCCCCccchhhhcCCcccccCcc
Q 048829 770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL--PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSL 847 (976)
Q Consensus 770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 847 (976)
+.+|+.|++++|.+...-+.++...++|++|++++|+|+.+++..+ ++.|++|.+++|.+....- ..|..+.+|
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----~af~~lssL 367 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----GAFVGLSSL 367 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh----hHHHHhhhh
Confidence 8899999999998666667788888999999999999999887755 6889999999998876655 678899999
Q ss_pred cEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCC-c
Q 048829 848 RYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGL-P 925 (976)
Q Consensus 848 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~-~ 925 (976)
++||+++ +.+....++. ..+|..+++|+.|++.+ |+++.||. ++..+++|++|++.+ +-+.+|-+..| |
T Consensus 368 ~~LdLr~--N~ls~~IEDa-----a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 368 HKLDLRS--NELSWCIEDA-----AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEP 438 (873)
T ss_pred hhhcCcC--CeEEEEEecc-----hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeeccccccc
Confidence 9999998 3443333332 45678899999999999 89999998 888899999999998 55777766666 4
Q ss_pred ccccceeecC
Q 048829 926 SSLLQLRIYR 935 (976)
Q Consensus 926 ~~L~~L~i~~ 935 (976)
-.|++|-+..
T Consensus 439 m~Lk~Lv~nS 448 (873)
T KOG4194|consen 439 MELKELVMNS 448 (873)
T ss_pred chhhhhhhcc
Confidence 5788876543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.7e-26 Score=237.50 Aligned_cols=360 Identities=18% Similarity=0.246 Sum_probs=247.4
Q ss_pred CceEEeccCC-CCCcccccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCC
Q 048829 480 QNSVVCRDTS-NQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLS 558 (976)
Q Consensus 480 L~~L~~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~ 558 (976)
.+.|.+.++. ...-...|..+++|+++++.+ +.++.++..+ ....+|+.|+|.+|.+.+.-.+.+..++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~---------~~sghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFG---------HESGHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhccccc---------ccccceeEEeeeccccccccHHHHHhHh
Confidence 3445555554 333334455666666666665 2344433321 1114566666666655555555555666
Q ss_pred CccEEEeecCCCCCCCCCcCCC--CCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc--cCCCCCcE
Q 048829 559 SLKEIEIYKCSSLVSFPEVALP--SKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKR 634 (976)
Q Consensus 559 ~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~ 634 (976)
.|+.||++. |.+..++...++ .++++|++++|. ++.+....| .++.+|..|.++.| .++.+|.. ..++.|+.
T Consensus 150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 666666666 566665554442 456666666666 566655555 55556666666664 34444433 22445566
Q ss_pred EeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchh
Q 048829 635 LDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLES 714 (976)
Q Consensus 635 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 714 (976)
|++.+|.. .. .+.+.+..+ ++|+.|.+..|.+...
T Consensus 226 LdLnrN~i-ri-------------------------------------------ve~ltFqgL-~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 226 LDLNRNRI-RI-------------------------------------------VEGLTFQGL-PSLQNLKLQRNDISKL 260 (873)
T ss_pred hhccccce-ee-------------------------------------------ehhhhhcCc-hhhhhhhhhhcCcccc
Confidence 66655531 00 011112222 7899999999999888
Q ss_pred hhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCC
Q 048829 715 IAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHN 793 (976)
Q Consensus 715 ~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~ 793 (976)
--.+|..+.++++|+++.| .+..+ ..++.++++|+.|++++|..-..-++.+.-+++|++|++++|.....-+..+.-
T Consensus 261 ~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred cCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence 8889999999999999995 45554 678889999999999999544444566677899999999999944444457899
Q ss_pred CCccceEEEeCCCCCCcccCCC--CCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCccccc
Q 048829 794 LTSLQQLTIIGGELPSLEEDGL--PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRL 871 (976)
Q Consensus 794 l~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~ 871 (976)
+..|++|.+++|.|..+.+..+ .++|++||+++|.+...+-. ....|.++++|+.|++-+ +.+.++|...
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~g--Nqlk~I~krA----- 411 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTG--NQLKSIPKRA----- 411 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecC--ceeeecchhh-----
Confidence 9999999999999999987654 79999999999998765432 124588899999999999 6888888754
Q ss_pred CCCCCCccccceeeccccCCCccc-cccccCCCCCCeEeecC
Q 048829 872 GTTLPLPASLTSLSIAFFPNLESL-SSSIVDLQNLTKLTLYD 912 (976)
Q Consensus 872 ~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~ 912 (976)
|..+++|++|+|.+ |-+.+| |.+|..+ .|+.|.+..
T Consensus 412 ---fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 412 ---FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---hccCcccceecCCC-Ccceeecccccccc-hhhhhhhcc
Confidence 68999999999999 566666 4477777 899998764
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-26 Score=254.46 Aligned_cols=105 Identities=33% Similarity=0.429 Sum_probs=81.6
Q ss_pred ccccc-cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhcccc
Q 048829 115 LPKLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK 193 (976)
Q Consensus 115 ~~~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 193 (976)
|-++. +.-+|++||+++|.+...|..+..+.+|+.|+++.|.|...|.+++++.+|++|.|.+ +.+..+|.++..+++
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKN 115 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhc
Confidence 34444 4555888888888888888888888888888888888888888888888888888887 688888888888888
Q ss_pred CceeecCCCCCccccccccCCCCCCcee
Q 048829 194 LHHLNNSNTDSLEETPLGIGKLTCLQTL 221 (976)
Q Consensus 194 L~~L~l~~~~~~~~lp~~i~~L~~L~~L 221 (976)
|++|++++|. ...+|.-+..++.+..+
T Consensus 116 l~~LdlS~N~-f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 116 LQYLDLSFNH-FGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred ccccccchhc-cCCCchhHHhhhHHHHH
Confidence 8888888887 77777666555544433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3e-23 Score=258.73 Aligned_cols=313 Identities=24% Similarity=0.323 Sum_probs=163.6
Q ss_pred cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829 533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI 611 (976)
Q Consensus 533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 611 (976)
+++|+.|.+.+++ ++.+|..+ .+.+|++|++.+ +.+..++. ...+++|+.|++++|..++.+|.. ..+++|+.
T Consensus 588 p~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~ 661 (1153)
T PLN03210 588 PPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLET 661 (1153)
T ss_pred CcccEEEEecCCC-CCCCCCcC-CccCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccE
Confidence 3456666665543 34444443 345566666655 34444443 223555666666655555555532 24555666
Q ss_pred EEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccc
Q 048829 612 LKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLE 690 (976)
Q Consensus 612 L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 690 (976)
|++++|..+..+|.. ..+.+|+.|++++|..++.+ |.+. . .++|+.|.+++|.
T Consensus 662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L--p~~i-~-------l~sL~~L~Lsgc~---------------- 715 (1153)
T PLN03210 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL--PTGI-N-------LKSLYRLNLSGCS---------------- 715 (1153)
T ss_pred EEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc--CCcC-C-------CCCCCEEeCCCCC----------------
Confidence 666666555555543 34455555566555555554 3322 1 1345555555554
Q ss_pred cccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCC------ccC
Q 048829 691 SLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLE------SFP 764 (976)
Q Consensus 691 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~------~~~ 764 (976)
.++.+|.. .++|++|++++| .++.+|..+ .+++|++|.+.++.... .++
T Consensus 716 --------------------~L~~~p~~---~~nL~~L~L~~n-~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 716 --------------------RLKSFPDI---STNISWLDLDET-AIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred --------------------Cccccccc---cCCcCeeecCCC-ccccccccc-cccccccccccccchhhccccccccc
Confidence 44333322 234444555443 233444333 24445555444432100 000
Q ss_pred -CCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeC-CCCCCcccCCCCCccceeeecCCCCccchhhhcCCccc
Q 048829 765 -EGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFH 842 (976)
Q Consensus 765 -~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 842 (976)
.....+++|+.|++++|+.+..+|..++++++|+.|++++ +.+..+|....+++|+.|++++|......+ .
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p-------~ 843 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP-------D 843 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc-------c
Confidence 0111134555555555555555555555555555555555 345555544445566666666665544332 1
Q ss_pred ccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccC
Q 048829 843 RFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFP 920 (976)
Q Consensus 843 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~ 920 (976)
..++|+.|++++ +.++.+|... ..+++|+.|++++|++++.+|..+..+++|+.+++++|++++.++
T Consensus 844 ~~~nL~~L~Ls~--n~i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 844 ISTNISDLNLSR--TGIEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cccccCEeECCC--CCCccChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 235667777766 3556666554 366777777777777777777766777777777777777776554
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.9e-25 Score=231.88 Aligned_cols=330 Identities=19% Similarity=0.277 Sum_probs=220.1
Q ss_pred cccccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcc-cCccccCCCCCccEEEeecCCCC
Q 048829 493 HDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLV-KLPQSSLSLSSLKEIEIYKCSSL 571 (976)
Q Consensus 493 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l 571 (976)
....+..+.+|++|.+.++ .+.++.. .+..+ |.|+.+.+++|+.-. .+|..+..+..|..|++++ +++
T Consensus 47 vPeEL~~lqkLEHLs~~HN-~L~~vhG-----ELs~L----p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL 115 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHN-QLISVHG-----ELSDL----PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQL 115 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhh-hhHhhhh-----hhccc----hhhHHHhhhccccccCCCCchhcccccceeeecch-hhh
Confidence 3344566777777777764 3333222 12233 677777777766543 4777777888888888888 777
Q ss_pred CCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccc
Q 048829 572 VSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVE 649 (976)
Q Consensus 572 ~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~ 649 (976)
+..|. .....++-+|++++|. +..||...+ .+++.|-.|++++| .+..+|+- ..+..|++|++++|+..
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~------ 186 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLN------ 186 (1255)
T ss_pred hhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhh------
Confidence 77775 4456777788888887 788887766 67777778888875 44544433 55566777777777421
Q ss_pred cccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCc-chhhhhhhcCCCCCceE
Q 048829 650 EGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPK-LESIAERLDNNTSLETI 728 (976)
Q Consensus 650 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~l~~L~~L 728 (976)
...+.. +|+. .+|+.|++++.+. +..+|..+..+.+|..+
T Consensus 187 -----------------hfQLrQ------------LPsm----------tsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 187 -----------------HFQLRQ------------LPSM----------TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred -----------------HHHHhc------------Cccc----------hhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 111111 1111 5677777776543 35677777788888888
Q ss_pred EeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829 729 NISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELP 808 (976)
Q Consensus 729 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~ 808 (976)
|++. +.+..+|..+..+++|+.|++++| .++.+........+|++|+++.|+ +..+|..+..++.|+.|++.+|.+.
T Consensus 228 DlS~-N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 228 DLSE-NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred cccc-cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCccc
Confidence 8886 567777888888888888888887 566665555556678888888877 7778888888888888877776665
Q ss_pred CcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccc
Q 048829 809 SLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAF 888 (976)
Q Consensus 809 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 888 (976)
. ...+ +.++.+.+|+.+..++ +.++-+|+.. .-+..|+.|.+++
T Consensus 305 F----------------------eGiP---SGIGKL~~Levf~aan--N~LElVPEgl---------cRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 305 F----------------------EGIP---SGIGKLIQLEVFHAAN--NKLELVPEGL---------CRCVKLQKLKLDH 348 (1255)
T ss_pred c----------------------cCCc---cchhhhhhhHHHHhhc--cccccCchhh---------hhhHHHHHhcccc
Confidence 3 1111 4566666777766665 5666666665 4667777777776
Q ss_pred cCCCccccccccCCCCCCeEeecCCCCccccCC
Q 048829 889 FPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPE 921 (976)
Q Consensus 889 ~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~ 921 (976)
|.+..+|.++.-++.|+.|++++++.+-.-|+
T Consensus 349 -NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 349 -NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred -cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 67777777777777777777777776665554
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=3.5e-24 Score=224.79 Aligned_cols=354 Identities=19% Similarity=0.254 Sum_probs=247.3
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCC-CcCCCCCCcEEEEccCCC-CCCCCCccccCCCCcccE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFP-EVALPSKLKKIEIRECDA-LKSLPEPWMCDTSSSLEI 611 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~L~~L~l~~~~~-l~~l~~~~~~~~l~~L~~ 611 (976)
++++.|.|.. ..+..+|..++.+.+|++|.+++ +++.++. ....+|.|+.+.+.+|.. -..+|..+| .+..|..
T Consensus 32 t~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF--~l~dLt~ 107 (1255)
T KOG0444|consen 32 TQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF--RLKDLTI 107 (1255)
T ss_pred hheeEEEech-hhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHHHhhhccccccCCCCchhc--cccccee
Confidence 4555555544 34455666667777777777777 4444433 345567777777776652 223666666 6777777
Q ss_pred EEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccc
Q 048829 612 LKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLE 690 (976)
Q Consensus 612 L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 690 (976)
|++++| .++..|.. ....++-.|++++|. +.++ |..+. -++
T Consensus 108 lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetI--Pn~lf--------------------inL-------------- 149 (1255)
T KOG0444|consen 108 LDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETI--PNSLF--------------------INL-------------- 149 (1255)
T ss_pred eecchh-hhhhcchhhhhhcCcEEEEcccCc-cccC--CchHH--------------------Hhh--------------
Confidence 777775 45555544 555667777777763 3444 32211 111
Q ss_pred cccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCC-CCccCCCCCC
Q 048829 691 SLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGN-LESFPEGGLP 769 (976)
Q Consensus 691 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~ 769 (976)
.-|-.||||+|. ++.+|+.+..+..|++|++++|+....--.-+.++++|++|++++.+. +..+|..+-.
T Consensus 150 --------tDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 150 --------TDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred --------HhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 346677777764 466777788888888888888764332112223357778888877543 3457777777
Q ss_pred CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCccc-CCCCCccceeeecCCCCccchhhhcCCcccccCccc
Q 048829 770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR 848 (976)
Q Consensus 770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 848 (976)
+.+|..+|++.|. +..+|+.+.++++|+.|++++|.|+.+.. .+...+|+.|++++|.++..+ ..+..+++|+
T Consensus 221 l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP-----~avcKL~kL~ 294 (1255)
T KOG0444|consen 221 LHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP-----DAVCKLTKLT 294 (1255)
T ss_pred hhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch-----HHHhhhHHHH
Confidence 7888888888776 77788888888888888888888887764 355678888888888876543 4678999999
Q ss_pred EEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCC-CCccc
Q 048829 849 YLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK-GLPSS 927 (976)
Q Consensus 849 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~ 927 (976)
.|.+.++.-..+.+|++++ .+.+|+.+..++ |.++-+|.++..+..|+.|.+++ +.+-.+|+. .+.+.
T Consensus 295 kLy~n~NkL~FeGiPSGIG---------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~ 363 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIG---------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPD 363 (1255)
T ss_pred HHHhccCcccccCCccchh---------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCC
Confidence 9999985556778999884 899999999999 89999999999999999999987 666777774 56789
Q ss_pred ccceeecCCcchHH----HHhccCCcccccccc
Q 048829 928 LLQLRIYRCPLIEE----KCRKDGGQYWDLLTH 956 (976)
Q Consensus 928 L~~L~i~~c~~l~~----~~~~~~~~~~~~i~~ 956 (976)
|+.||+..+|+|.- .-++ ...+|+.|.+
T Consensus 364 l~vLDlreNpnLVMPPKP~da~-~~lefYNIDF 395 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPPKPNDAR-KKLEFYNIDF 395 (1255)
T ss_pred cceeeccCCcCccCCCCcchhh-hcceeeecce
Confidence 99999999998621 1111 2347887765
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=9e-16 Score=176.83 Aligned_cols=214 Identities=28% Similarity=0.372 Sum_probs=115.2
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
..-..|+++++. ++.+|..+. ++|+.|++.+ ++++.+|. .+++|++|++++|. ++.+|. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~-----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccC-CcCCCCCC--CCCCCcEEEecCCc-cCcccC-----cccccceee
Confidence 446678888874 446776554 4788888887 67777774 36778888888875 666664 245677777
Q ss_pred EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829 614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE 693 (976)
Q Consensus 614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 693 (976)
+++|. +..++. .+.+|+.|++++|. ++.+ |.
T Consensus 269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~N~-Lt~L--P~------------------------------------------- 299 (788)
T PRK15387 269 IFSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSL--PV------------------------------------------- 299 (788)
T ss_pred ccCCc-hhhhhh--chhhcCEEECcCCc-cccc--cc-------------------------------------------
Confidence 77653 444442 33456666665552 2222 10
Q ss_pred ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829 694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773 (976)
Q Consensus 694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 773 (976)
.|++|+.|++++|.+.+ +|.. ..+|+.|++++| .++.+|.. ..+|++|++++| .++.+|.. .++|
T Consensus 300 ---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L 364 (788)
T PRK15387 300 ---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDN-QLASLPTL---PSEL 364 (788)
T ss_pred ---cccccceeECCCCcccc-CCCC---cccccccccccC-cccccccc---ccccceEecCCC-ccCCCCCC---Cccc
Confidence 12456666666665443 2321 124555666653 33444431 135666666665 44445532 1355
Q ss_pred cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCC
Q 048829 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMG 829 (976)
Q Consensus 774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~ 829 (976)
+.|++++|. +..+|.. ..+|+.|++++|.|..+|. .+++|+.|++++|.+
T Consensus 365 ~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~--l~s~L~~LdLS~N~L 414 (788)
T PRK15387 365 YKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPV--LPSELKELMVSGNRL 414 (788)
T ss_pred ceehhhccc-cccCccc---ccccceEEecCCcccCCCC--cccCCCEEEccCCcC
Confidence 555665554 3344432 2345555555555554442 123444444444443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.6e-15 Score=174.74 Aligned_cols=254 Identities=27% Similarity=0.373 Sum_probs=132.3
Q ss_pred ccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEeecc
Q 048829 560 LKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQR 639 (976)
Q Consensus 560 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 639 (976)
-..|++++ +.++.+|. ..+++|+.|.+.+|. ++.+|. ..++|++|++++| .++.+|. .+.+|+.|++++
T Consensus 203 ~~~LdLs~-~~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGE-SGLTTLPD-CLPAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCC-CCCCcCCc-chhcCCCEEEccCCc-CCCCCC-----CCCCCcEEEecCC-ccCcccC--cccccceeeccC
Confidence 44556666 35555554 223456666666655 555553 2456666666664 4444442 234556666655
Q ss_pred CcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhh
Q 048829 640 CNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERL 719 (976)
Q Consensus 640 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 719 (976)
|. ++.+ |. +|.+|+.|++++|.+. .+|.
T Consensus 272 N~-L~~L--p~----------------------------------------------lp~~L~~L~Ls~N~Lt-~LP~-- 299 (788)
T PRK15387 272 NP-LTHL--PA----------------------------------------------LPSGLCKLWIFGNQLT-SLPV-- 299 (788)
T ss_pred Cc-hhhh--hh----------------------------------------------chhhcCEEECcCCccc-cccc--
Confidence 53 2222 10 1134555666665443 2332
Q ss_pred cCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccce
Q 048829 720 DNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQ 799 (976)
Q Consensus 720 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~ 799 (976)
..++|+.|++++| .++.+|.. ..+|+.|++++| .++.+|.. .++|+.|++++|. ++.+|.. .++|+.
T Consensus 300 -~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~ 366 (788)
T PRK15387 300 -LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYK 366 (788)
T ss_pred -cccccceeECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---Ccccce
Confidence 2345666666664 44444432 234556666665 44445531 1356666666655 4445532 245556
Q ss_pred EEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCcc
Q 048829 800 LTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPA 879 (976)
Q Consensus 800 L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~ 879 (976)
|++++|.|..+|. .+.+|+.|++++|.+..... ..++|+.|++++ +.+..+|. .+.
T Consensus 367 L~Ls~N~L~~LP~--l~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~--N~LssIP~------------l~~ 422 (788)
T PRK15387 367 LWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLPV--------LPSELKELMVSG--NRLTSLPM------------LPS 422 (788)
T ss_pred ehhhccccccCcc--cccccceEEecCCcccCCCC--------cccCCCEEEccC--CcCCCCCc------------chh
Confidence 6666666665553 23556666666665543211 124566666666 23444543 124
Q ss_pred ccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829 880 SLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 880 ~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 914 (976)
+|+.|++++ |.++.||..+..+++|+.|++++|+
T Consensus 423 ~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 556666666 5566666666666666666666654
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=6.5e-17 Score=162.34 Aligned_cols=96 Identities=27% Similarity=0.372 Sum_probs=47.2
Q ss_pred EEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-hhccccCceeecCCCC
Q 048829 127 FSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNTD 203 (976)
Q Consensus 127 L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 203 (976)
++|..|+|+.| |.+|+.+++||.||||+|+|+.| |.+|..|..|-.|-+.++++|+.+|.+ |++|..|+.|.+.-|.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 34445555555 33445555555555555555544 445555555555544444455555544 4555555555554444
Q ss_pred Cccccccc-cCCCCCCceecc
Q 048829 204 SLEETPLG-IGKLTCLQTLCN 223 (976)
Q Consensus 204 ~~~~lp~~-i~~L~~L~~L~~ 223 (976)
+..++.+ +..|++|..|.+
T Consensus 152 -i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 152 -INCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred -hcchhHHHHHHhhhcchhcc
Confidence 4444433 444444444433
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=1e-16 Score=160.89 Aligned_cols=115 Identities=29% Similarity=0.374 Sum_probs=102.1
Q ss_pred ccccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCC-CCccccch-hhhccCCccEEecccccchhccch
Q 048829 111 APSILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSG-TNIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCA 186 (976)
Q Consensus 111 ~~~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~-n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~ 186 (976)
...+|+..| .+++||+||||.|+|+.| |.+|.+|+.|-.|-+.+ |+|+.+|. .|++|..|+.|.+.- +.+..++.
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~ 157 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQ 157 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhH
Confidence 578999999 999999999999999999 99999999998888877 89999986 589999999999988 57777765
Q ss_pred h-hhccccCceeecCCCCCccccccc-cCCCCCCceecceEec
Q 048829 187 D-MGNLIKLHHLNNSNTDSLEETPLG-IGKLTCLQTLCNFVVG 227 (976)
Q Consensus 187 ~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~~ 227 (976)
+ |..|++|..|.+..|. +..++.+ +..+..++++......
T Consensus 158 ~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 5 9999999999999998 9999985 9999999998655444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=3.9e-14 Score=164.79 Aligned_cols=203 Identities=23% Similarity=0.394 Sum_probs=107.3
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEee
Q 048829 558 SSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDI 637 (976)
Q Consensus 558 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 637 (976)
.+...|++++ ..++.+|.. .++.|+.|++++|. ++.+|...+ ++|+.|++++|. ++.+|.. .+.+|+.|++
T Consensus 178 ~~~~~L~L~~-~~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~l~----~nL~~L~Ls~N~-LtsLP~~-l~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKI-LGLTTIPAC-IPEQITTLILDNNE-LKSLPENLQ----GNIKTLYANSNQ-LTSIPAT-LPDTIQEMEL 248 (754)
T ss_pred cCceEEEeCC-CCcCcCCcc-cccCCcEEEecCCC-CCcCChhhc----cCCCEEECCCCc-cccCChh-hhccccEEEC
Confidence 3567788888 577777752 35688888888886 777776433 467777777653 4444432 2334555555
Q ss_pred ccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhh
Q 048829 638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAE 717 (976)
Q Consensus 638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 717 (976)
++|. +..+ |.. ++.+|+.|++++|++. .+|.
T Consensus 249 s~N~-L~~L--P~~---------------------------------------------l~s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 249 SINR-ITEL--PER---------------------------------------------LPSALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred cCCc-cCcC--Chh---------------------------------------------HhCCCCEEECcCCccC-cccc
Confidence 5553 1122 110 1134556666555443 3444
Q ss_pred hhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCcc
Q 048829 718 RLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSL 797 (976)
Q Consensus 718 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L 797 (976)
.+. ++|+.|++++| .++.+|..+. ++|+.|++++| .+..+|.... ++|+.|++++|. +..+|..+. ++|
T Consensus 280 ~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l~--~sL 348 (754)
T PRK15370 280 NLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENA-LTSLPASLP--PEL 348 (754)
T ss_pred ccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCc-cccCChhhc--Ccc
Confidence 332 35666666664 3444444332 35556666655 3344443222 356666666554 344554332 455
Q ss_pred ceEEEeCCCCCCcccCCCCCccceeeecCCCCc
Q 048829 798 QQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGI 830 (976)
Q Consensus 798 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 830 (976)
+.|++++|.+..+|. .++++|+.|++++|.+.
T Consensus 349 ~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt 380 (754)
T PRK15370 349 QVLDVSKNQITVLPE-TLPPTITTLDVSRNALT 380 (754)
T ss_pred cEEECCCCCCCcCCh-hhcCCcCEEECCCCcCC
Confidence 555555555554442 23345555555555443
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=3.3e-14 Score=168.00 Aligned_cols=150 Identities=27% Similarity=0.286 Sum_probs=111.5
Q ss_pred ccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCc--cccccc-cccCCCcccEEecCCCC-ccccc
Q 048829 86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYH--ISELPD-SVGDLRYLRYLNLSGTN-IRTLP 161 (976)
Q Consensus 86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~--i~~lp~-~~~~L~~L~~L~L~~n~-i~~lp 161 (976)
+........|...+..+.. .....-...+.|++|-+.+|. +..++. .|..++.||+|||++|. +.++|
T Consensus 517 ~~~~~~~~~rr~s~~~~~~--------~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKI--------EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccchhheeEEEEeccch--------hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3344556677776655432 222223345579999999996 667754 47889999999999874 77999
Q ss_pred hhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCceecceEec-CCCCCCchhhhcc
Q 048829 162 ESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVG-KDSGSGLSELKLL 240 (976)
Q Consensus 162 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~-~~~~~~~~~L~~L 240 (976)
++|++|.+||+|++++ ..+..+|.++++|++|.+|++..+.....+|..+..|.+||+|.++... ..+...+.++.+|
T Consensus 589 ~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL 667 (889)
T ss_pred hHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence 9999999999999999 6899999999999999999999998667776667779999999776654 2223344444444
Q ss_pred cccc
Q 048829 241 MHLR 244 (976)
Q Consensus 241 ~~L~ 244 (976)
..|+
T Consensus 668 e~L~ 671 (889)
T KOG4658|consen 668 EHLE 671 (889)
T ss_pred cchh
Confidence 4443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=9.4e-14 Score=161.64 Aligned_cols=247 Identities=21% Similarity=0.308 Sum_probs=181.2
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
.+...|+++++. ++.+|..+ .++|+.|++++ +.++.+|.. .+++|++|++++|. ++.+|... .++|+.|+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~I--p~~L~~L~Ls~-N~LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~~l----~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACI--PEQITTLILDN-NELKSLPEN-LQGNIKTLYANSNQ-LTSIPATL----PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCC-cCcCCccc--ccCCcEEEecC-CCCCcCChh-hccCCCEEECCCCc-cccCChhh----hccccEEE
Confidence 578899999864 55677655 35899999998 688888863 34799999999997 88888743 35799999
Q ss_pred EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829 614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE 693 (976)
Q Consensus 614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 693 (976)
+++|. +..+|.. .+.+|+.|++++| .++.+ |..
T Consensus 248 Ls~N~-L~~LP~~-l~s~L~~L~Ls~N-~L~~L--P~~------------------------------------------ 280 (754)
T PRK15370 248 LSINR-ITELPER-LPSALQSLDLFHN-KISCL--PEN------------------------------------------ 280 (754)
T ss_pred CcCCc-cCcCChh-HhCCCCEEECcCC-ccCcc--ccc------------------------------------------
Confidence 99985 4466543 3467999999876 34433 221
Q ss_pred ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829 694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773 (976)
Q Consensus 694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 773 (976)
++++|+.|++++|.+.. +|..+. ++|+.|++++| .+..+|..+ .++|++|++++| .++.+|..+. ++|
T Consensus 281 ---l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~l~--~sL 348 (754)
T PRK15370 281 ---LPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSN-SLTALPETL--PPGLKTLEAGEN-ALTSLPASLP--PEL 348 (754)
T ss_pred ---cCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCC-ccccCCccc--cccceeccccCC-ccccCChhhc--Ccc
Confidence 12568888888886553 444332 47999999995 555677554 379999999999 5677886543 699
Q ss_pred cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR 853 (976)
Q Consensus 774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 853 (976)
+.|++++|. +..+|..+ .++|+.|++++|.+..+|.. ++..|+.|++++|.+... +...+.....++++..|++.
T Consensus 349 ~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~-l~~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 349 QVLDVSKNQ-ITVLPETL--PPTITTLDVSRNALTNLPEN-LPAALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred cEEECCCCC-CCcCChhh--cCCcCEEECCCCcCCCCCHh-HHHHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEee
Confidence 999999997 66788755 36899999999999988753 556899999999987643 21111234456788888888
Q ss_pred c
Q 048829 854 G 854 (976)
Q Consensus 854 ~ 854 (976)
+
T Consensus 424 ~ 424 (754)
T PRK15370 424 Y 424 (754)
T ss_pred C
Confidence 8
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=9.3e-16 Score=135.76 Aligned_cols=128 Identities=27% Similarity=0.374 Sum_probs=79.9
Q ss_pred ccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhh
Q 048829 86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVN 165 (976)
Q Consensus 86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~ 165 (976)
+.+..+++...|.+.++. ...+||.+..+++|++|++++|+|.++|.+++.++.||.|+++-|.+..+|..||
T Consensus 27 ~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred ccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 333444455555444332 3456666666666666666666666666666666666666666666666666666
Q ss_pred ccCCccEEecccccch-hccchhhhccccCceeecCCCCCccccccccCCCCCCcee
Q 048829 166 KLYNLHSLLLEDCDRL-KKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTL 221 (976)
Q Consensus 166 ~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 221 (976)
.++-|++|||++|+.- ..+|..|-.|+.|+-|+++.|. ...+|.++++|++||.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 6666666666663221 2356666666666666666666 66666666666666665
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.9e-15 Score=132.64 Aligned_cols=145 Identities=23% Similarity=0.328 Sum_probs=101.2
Q ss_pred ceeEEEeecccccCCcccccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcc
Q 048829 68 YLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYL 147 (976)
Q Consensus 68 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L 147 (976)
.+.++.+..+... ...+.+.++++|.+|-+.++. ..++|.++..+++||.|+++-|++..+|..||.++.|
T Consensus 34 ~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 34 NITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhcccCcee--ecCCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 3445555443321 223455566777777655443 4566777777777888877777777777777777888
Q ss_pred cEEecCCCCcc--ccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCceecc
Q 048829 148 RYLNLSGTNIR--TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCN 223 (976)
Q Consensus 148 ~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 223 (976)
++|||++|++. .+|..|..++.|+.|.|+. +....+|.++++|++||.|.+..|. +-++|.+++.|++|++|.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 88888777765 5677777777777777777 5677777777888888887777777 7777777777777777753
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=3.6e-12 Score=138.72 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=14.4
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCC---CceEEeecC
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTS---LETINISNC 733 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~l~~c 733 (976)
++|+.|++++|+..+..+..+..+.+ |++|++++|
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN 118 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC
Confidence 34444444444443333333222222 455555444
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=2.7e-12 Score=139.72 Aligned_cols=210 Identities=18% Similarity=0.141 Sum_probs=120.0
Q ss_pred CCceEEEEcCCCcc------hhhhhhhcCCCCCceEEeecCCCcccccccccCCCC---CcEEEccCCCCCC----ccCC
Q 048829 699 PSVKVLDVYGCPKL------ESIAERLDNNTSLETINISNCENLKILSSGLHNLCQ---LQQIGIGGCGNLE----SFPE 765 (976)
Q Consensus 699 ~~L~~L~L~~~~~~------~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~---L~~L~l~~~~~l~----~~~~ 765 (976)
+++++++++++... ..++..+..+++|+.|++++|......+..+..+.+ |++|++++|.... .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 44666666665443 344566777889999999987766555444444444 9999999885431 1122
Q ss_pred CCCCC-CCccEEEecCCcCcc----cCCCcCCCCCccceEEEeCCCCCCccc------CCCCCccceeeecCCCCccchh
Q 048829 766 GGLPC-AKLRRLEIYDCKRLE----ALPKGLHNLTSLQQLTIIGGELPSLEE------DGLPTNLHSLRIEGNMGIWKSM 834 (976)
Q Consensus 766 ~~~~~-~~L~~L~l~~c~~l~----~~~~~l~~l~~L~~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~ 834 (976)
....+ ++|++|++++|.... .++..+..+++|++|++++|.+..-.. ....++|+.|++++|.+.....
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 23334 788889998887542 233455667788888888877763111 1123578888888877654433
Q ss_pred hhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCc-----cccccccCCCCCCeEe
Q 048829 835 IERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLE-----SLSSSIVDLQNLTKLT 909 (976)
Q Consensus 835 ~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~~l~~l~~L~~L~ 909 (976)
......+..+++|++|++++| .....-..... .......++|++|++++| .++ .+...+..+++|++++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~----~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDN-NLTDAGAAALA----SALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred HHHHHHhcccCCCCEEecCCC-cCchHHHHHHH----HHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEE
Confidence 221234556777777777773 21110000000 000012367777777775 332 2333455556777777
Q ss_pred ecCCC
Q 048829 910 LYDCP 914 (976)
Q Consensus 910 l~~c~ 914 (976)
+++|+
T Consensus 285 l~~N~ 289 (319)
T cd00116 285 LRGNK 289 (319)
T ss_pred CCCCC
Confidence 77643
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.97 E-value=2.6e-11 Score=123.80 Aligned_cols=182 Identities=19% Similarity=0.251 Sum_probs=92.4
Q ss_pred ccccEEEeeccCCcccCc--cccCCCCCccEEEeecCCCCCCCCC---cCCCCCCcEEEEccCCCCCCCCCccccCCCCc
Q 048829 534 CRLEYLRLRYCEGLVKLP--QSSLSLSSLKEIEIYKCSSLVSFPE---VALPSKLKKIEIRECDALKSLPEPWMCDTSSS 608 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~ 608 (976)
+-+..+++.+|..+++.. ..-..+..|+.|..++|..+++.+- ....++|+.|.+.+|..+++........+++.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 334445555554444322 1123455666666666666554433 22356666666666666555544444456666
Q ss_pred ccEEEEecCCCCccc--c-cccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCc
Q 048829 609 LEILKIWDCHSLTYI--A-EVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNEL 685 (976)
Q Consensus 609 L~~L~l~~~~~l~~~--~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 685 (976)
|+.+++.+|..+..- . .....+.|+.+.+++|..+++- ++..+.......
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~----gi~~l~~~~c~~----------------------- 400 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE----GIRHLSSSSCSL----------------------- 400 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh----hhhhhhhccccc-----------------------
Confidence 777766666443322 1 1133445666666655544322 111111111111
Q ss_pred ccccccccccCCCCCceEEEEcCCCcch-hhhhhhcCCCCCceEEeecCCCcccc--cccccCCCCCcEEEcc
Q 048829 686 PATLESLEVGNLPPSVKVLDVYGCPKLE-SIAERLDNNTSLETINISNCENLKIL--SSGLHNLCQLQQIGIG 755 (976)
Q Consensus 686 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~ 755 (976)
..|..+.|++|+.+. ..-+-+..+++|+.+++.+|...+.- ...-.++|++++..+-
T Consensus 401 -------------~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 401 -------------EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred -------------cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 334555555554433 22334566777888888888776643 2223457777666554
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.95 E-value=2.2e-11 Score=124.27 Aligned_cols=258 Identities=19% Similarity=0.314 Sum_probs=143.7
Q ss_pred ccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCccc--CccccCCCCCccEEEeecCCCCCCCC
Q 048829 498 QDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVK--LPQSSLSLSSLKEIEIYKCSSLVSFP 575 (976)
Q Consensus 498 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~l~ 575 (976)
..+++|++|.+..|..+++. .+..+...+++|+.|+++.|+.... +-....++..++.+...+|..+..-.
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~-------~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~ 259 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDV-------SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA 259 (483)
T ss_pred HhcchhhhhhhcccchhHHH-------HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH
Confidence 34566666666666666553 2333444556777777777765543 11233455566666666765544211
Q ss_pred ---CcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc---cCCCCCcEEeeccCcCccccccc
Q 048829 576 ---EVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV---QLPLSLKRLDIQRCNKIRTLTVE 649 (976)
Q Consensus 576 ---~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~ 649 (976)
.......+.++++.+|..+++.........+..|+.|..++|..+...+.. ....+|+.+.+++|..++..
T Consensus 260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~--- 336 (483)
T KOG4341|consen 260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR--- 336 (483)
T ss_pred HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---
Confidence 022345566666667766666553333345677777777777665543322 44456777777777665543
Q ss_pred cccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEE
Q 048829 650 EGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETIN 729 (976)
Q Consensus 650 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 729 (976)
++..+ .-..+.|+.+++.+|....+ +.+.....+++.|++|.
T Consensus 337 -~ft~l---~rn~~~Le~l~~e~~~~~~d----------------------------------~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 337 -GFTML---GRNCPHLERLDLEECGLITD----------------------------------GTLASLSRNCPRLRVLS 378 (483)
T ss_pred -hhhhh---hcCChhhhhhcccccceehh----------------------------------hhHhhhccCCchhccCC
Confidence 11111 11113344444444433222 12334456777888888
Q ss_pred eecCCCcccc-----cccccCCCCCcEEEccCCCCCCccC-CCCCCCCCccEEEecCCcCcccCC--CcCCCCCccceEE
Q 048829 730 ISNCENLKIL-----SSGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRLEIYDCKRLEALP--KGLHNLTSLQQLT 801 (976)
Q Consensus 730 l~~c~~l~~l-----p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~--~~l~~l~~L~~L~ 801 (976)
++.|..++.. ...-.+...|+.+.+.+|+.++.-. .....+++|+.+++.+|.....-+ ..-.++|++++..
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 8888777654 3333456778888888887765322 234557788888888887554322 1224566666654
Q ss_pred Ee
Q 048829 802 II 803 (976)
Q Consensus 802 l~ 803 (976)
+-
T Consensus 459 ~~ 460 (483)
T KOG4341|consen 459 YF 460 (483)
T ss_pred hc
Confidence 43
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.1e-09 Score=103.52 Aligned_cols=131 Identities=26% Similarity=0.297 Sum_probs=54.9
Q ss_pred cccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhh-
Q 048829 87 DLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV- 164 (976)
Q Consensus 87 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i- 164 (976)
...+..++|.|.+.++. ......+. .+.+|++|||++|.|+.++ .+..+++|++|++++|.|+.+++.+
T Consensus 14 ~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchH
Confidence 34455567777776553 12234565 6889999999999999884 6888999999999999999987665
Q ss_pred hccCCccEEecccccchhccc--hhhhccccCceeecCCCCCccccccc----cCCCCCCceecceEecC
Q 048829 165 NKLYNLHSLLLEDCDRLKKLC--ADMGNLIKLHHLNNSNTDSLEETPLG----IGKLTCLQTLCNFVVGK 228 (976)
Q Consensus 165 ~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~~~~~~~ 228 (976)
..+++|++|++++ |.+..+- ..+..+++|++|++.+|. +...+.. +..+++|+.|+...+..
T Consensus 85 ~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 85 KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 4689999999998 5676653 347788999999999998 6555532 78888888887655543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.5e-09 Score=111.88 Aligned_cols=152 Identities=20% Similarity=0.128 Sum_probs=97.8
Q ss_pred CCceEEEEcCCCcch-hhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccC--CCCCCCCCccE
Q 048829 699 PSVKVLDVYGCPKLE-SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP--EGGLPCAKLRR 775 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~ 775 (976)
+.|+.|.|++|.+.. .+-.....+++|+.|++..|..+..-......+..|++|+|++|+.+. ++ .....+|.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 567777777777664 344456778888888888875443333334457888888888885554 33 23456788888
Q ss_pred EEecCCcCccc-CCCc-----CCCCCccceEEEeCCCCCCcccC---CCCCccceeeecCCCCccchhhhcCCcccccCc
Q 048829 776 LEIYDCKRLEA-LPKG-----LHNLTSLQQLTIIGGELPSLEED---GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS 846 (976)
Q Consensus 776 L~l~~c~~l~~-~~~~-----l~~l~~L~~L~l~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 846 (976)
|+++.|..-.. +|.. ...+++|++|++..|.|..++.. ...++|+.|.+..|++.+..-..-...++.+++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~ 355 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQ 355 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhh
Confidence 88888873221 2332 36788999999999888766553 456788888888877665432111123445555
Q ss_pred ccEEE
Q 048829 847 LRYLL 851 (976)
Q Consensus 847 L~~L~ 851 (976)
|..|+
T Consensus 356 l~~LN 360 (505)
T KOG3207|consen 356 LVKLN 360 (505)
T ss_pred hhhhc
Confidence 55553
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=3.3e-09 Score=100.23 Aligned_cols=104 Identities=29% Similarity=0.392 Sum_probs=39.8
Q ss_pred cCCcccEEEccCCcccccccccc-CCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhh-hccccCcee
Q 048829 120 KLQRLRVFSLRGYHISELPDSVG-DLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLIKLHHL 197 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~-~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L 197 (976)
+..++|.|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.+ +.+..+++|++|++++ |.+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 556789999999999987 4565 689999999999999999 4688999999999999 6899997766 479999999
Q ss_pred ecCCCCCcccccc--ccCCCCCCceecceEec
Q 048829 198 NNSNTDSLEETPL--GIGKLTCLQTLCNFVVG 227 (976)
Q Consensus 198 ~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~~ 227 (976)
++++|. +..+.. .+..+++|+.|++..+.
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 999998 766543 26677777777655443
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.72 E-value=6.9e-08 Score=102.37 Aligned_cols=96 Identities=26% Similarity=0.525 Sum_probs=68.2
Q ss_pred hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCc
Q 048829 717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTS 796 (976)
Q Consensus 717 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~ 796 (976)
..+..+.+++.|++++| .++.+|. -.++|++|.+++|..++.+|..+. ++|+.|++++|..+..+|. +
T Consensus 46 ~r~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 46 PQIEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HHHHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------c
Confidence 33556788999999998 7777772 134799999999988888886442 5899999999977777764 4
Q ss_pred cceEEEeCCCCCCcccCCCCCccceeeecC
Q 048829 797 LQQLTIIGGELPSLEEDGLPTNLHSLRIEG 826 (976)
Q Consensus 797 L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~ 826 (976)
|+.|++.++....++ .+|++|+.|.+.+
T Consensus 114 Le~L~L~~n~~~~L~--~LPssLk~L~I~~ 141 (426)
T PRK15386 114 VRSLEIKGSATDSIK--NVPNGLTSLSINS 141 (426)
T ss_pred cceEEeCCCCCcccc--cCcchHhheeccc
Confidence 677777665544432 3455666666643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.6e-08 Score=113.26 Aligned_cols=106 Identities=31% Similarity=0.458 Sum_probs=93.1
Q ss_pred cccccCCcccEEEccCCccccccccccCCC-cccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccC
Q 048829 116 PKLLKLQRLRVFSLRGYHISELPDSVGDLR-YLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL 194 (976)
Q Consensus 116 ~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 194 (976)
..+..++.++.|++.++.++.+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++ +.+.++|...+.+++|
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L 188 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhh
Confidence 334466889999999999999998888885 99999999999999999999999999999999 6899999888899999
Q ss_pred ceeecCCCCCccccccccCCCCCCceecc
Q 048829 195 HHLNNSNTDSLEETPLGIGKLTCLQTLCN 223 (976)
Q Consensus 195 ~~L~l~~~~~~~~lp~~i~~L~~L~~L~~ 223 (976)
+.|++++|. +..+|..++.+..|++|..
T Consensus 189 ~~L~ls~N~-i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 189 NNLDLSGNK-ISDLPPEIELLSALEELDL 216 (394)
T ss_pred hheeccCCc-cccCchhhhhhhhhhhhhh
Confidence 999999998 9999988777777777743
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=2.5e-08 Score=111.62 Aligned_cols=192 Identities=23% Similarity=0.303 Sum_probs=138.9
Q ss_pred EEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCC-CCcEEEccCCCCCCccCCCCCCCCCccEEEecCC
Q 048829 703 VLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLC-QLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC 781 (976)
Q Consensus 703 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 781 (976)
.+++..+.....+.. +..++.++.|++.+ +.+..+|.....+. +|+.|++++| .+..+|.....++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence 455555554333322 33447788888888 56666766555563 8889999888 66777656677888999999988
Q ss_pred cCcccCCCcCCCCCccceEEEeCCCCCCcccC-CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCc
Q 048829 782 KRLEALPKGLHNLTSLQQLTIIGGELPSLEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMV 860 (976)
Q Consensus 782 ~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~ 860 (976)
+ +..+|...+.++.|+.|++++|.+..++.. +.+..|+++.+++|...... ..+..+.++..+.+.+ +.+.
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~--n~~~ 245 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSN--NKLE 245 (394)
T ss_pred h-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCC--ceee
Confidence 8 777777666888899999999999888876 46777999999888644333 2467777888887665 4555
Q ss_pred cCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCc
Q 048829 861 SFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKL 916 (976)
Q Consensus 861 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l 916 (976)
.++... ..+++++.|++++ +.+.+++. +..+.+|+.|++++....
T Consensus 246 ~~~~~~---------~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 DLPESI---------GNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eccchh---------ccccccceecccc-cccccccc-ccccCccCEEeccCcccc
Confidence 544444 4778899999998 78888885 888889999999884443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.4e-09 Score=107.74 Aligned_cols=241 Identities=14% Similarity=0.135 Sum_probs=121.8
Q ss_pred hhhhhcCCCCCceEEeecCCCccccc--ccccCCCCCcEEEccCCCCCCcc---CCCCCCCCCccEEEecCCcCcccCCC
Q 048829 715 IAERLDNNTSLETINISNCENLKILS--SGLHNLCQLQQIGIGGCGNLESF---PEGGLPCAKLRRLEIYDCKRLEALPK 789 (976)
Q Consensus 715 ~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~L~~L~l~~c~~l~~~~~ 789 (976)
+...-.++.+|++..+.+| .....+ .....|+.++.|++++| .+..+ ......+|+|+.|+++.|....-...
T Consensus 113 i~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 3444556777888777775 333333 24455777788888777 33222 11234567777777777763222211
Q ss_pred c-CCCCCccceEEEeCCCCCCccc---CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCC
Q 048829 790 G-LHNLTSLQQLTIIGGELPSLEE---DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPE 865 (976)
Q Consensus 790 ~-l~~l~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~ 865 (976)
. -..++.|+.|.++++.++.-.. ...+|+|+.|++.+|....... .....++.|+.|+|++ +.+-.++..
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~----~~~~i~~~L~~LdLs~--N~li~~~~~ 264 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA----TSTKILQTLQELDLSN--NNLIDFDQG 264 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec----chhhhhhHHhhccccC--Ccccccccc
Confidence 1 1345666666666665552111 1235666666666664222221 2234556666666666 233333311
Q ss_pred CcccccCCCCCCccccceeeccccCCCcccc--cc-----ccCCCCCCeEeecCCCCccccCC---CCCcccccceeecC
Q 048829 866 PEDRRLGTTLPLPASLTSLSIAFFPNLESLS--SS-----IVDLQNLTKLTLYDCPKLKYFPE---KGLPSSLLQLRIYR 935 (976)
Q Consensus 866 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~~-----l~~l~~L~~L~l~~c~~l~~i~~---~~~~~~L~~L~i~~ 935 (976)
- ....++.|..|.++. ..+.+|. .. ...+++|++|++.+++ +...+. .-..++|+.|.+.+
T Consensus 265 ~-------~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 265 Y-------KVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred c-------ccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence 1 113566666666666 3444432 11 2346666666666633 332222 22234555555544
Q ss_pred CcchHHHHhccCCccccccccccEE-EECCEEEeCCCCCCCC
Q 048829 936 CPLIEEKCRKDGGQYWDLLTHIPYA-RIAGKWVFNDDSTKED 976 (976)
Q Consensus 936 c~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~ 976 (976)
.+.=+| ++-....-|+.|+.+ .+++--+....|-.||
T Consensus 336 n~ln~e----~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AE 373 (505)
T KOG3207|consen 336 NYLNKE----TDTAKLLVIARISQLVKLNDVDISPNERRDAE 373 (505)
T ss_pred cccccc----ccceeEEeeeehhhhhhhcccccChHHhhhhh
Confidence 332121 112234556666664 5566666665555543
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=2.5e-09 Score=113.67 Aligned_cols=106 Identities=26% Similarity=0.474 Sum_probs=68.0
Q ss_pred ccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccc
Q 048829 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI 192 (976)
Q Consensus 113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 192 (976)
++|..+..+-.|..+.|..|.|..+|.++++|..|.||||+.|++..+|..++.|. |++|.+++ +++..+|.+++.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccch
Confidence 44555556666666666666666666666666666666666666666666666554 66666666 46666666666666
Q ss_pred cCceeecCCCCCccccccccCCCCCCcee
Q 048829 193 KLHHLNNSNTDSLEETPLGIGKLTCLQTL 221 (976)
Q Consensus 193 ~L~~L~l~~~~~~~~lp~~i~~L~~L~~L 221 (976)
.|.+||.+.|. +..+|..++.|.+|+.|
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 66666666666 66666666666666555
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=1.2e-08 Score=99.57 Aligned_cols=127 Identities=16% Similarity=0.203 Sum_probs=94.1
Q ss_pred CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829 770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY 849 (976)
Q Consensus 770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 849 (976)
+..|+++|+++|. ++.+.+++.-+|.++.|++++|.|..+...+.+++|..||+++|....... | -..+-+.++
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G----w-h~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG----W-HLKLGNIKT 356 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh----h-HhhhcCEee
Confidence 4567888888877 666777777778888888888888877777777888888888887665433 2 345677888
Q ss_pred EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc--cccCCCCCCeEeecCCCC
Q 048829 850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS--SIVDLQNLTKLTLYDCPK 915 (976)
Q Consensus 850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~l~~c~~ 915 (976)
|.+++ +.++.+..- ..+-+|..||+++ |+++.+.. +++++|-|+++.+.++|.
T Consensus 357 L~La~--N~iE~LSGL----------~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 357 LKLAQ--NKIETLSGL----------RKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eehhh--hhHhhhhhh----------Hhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 88887 455555432 3678888888888 67777765 788888899998888764
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=2.1e-09 Score=114.13 Aligned_cols=189 Identities=20% Similarity=0.215 Sum_probs=126.8
Q ss_pred eEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCC
Q 048829 702 KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC 781 (976)
Q Consensus 702 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 781 (976)
...|++.|.+ ..+|..+..|..|+.+.++. +.+..+|..+.++..|.+|+++.| .+..+|..+..+ -|+.|-+++|
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecC
Confidence 4456666644 45666777777888888887 567778888888999999999988 677788777766 5888888877
Q ss_pred cCcccCCCcCCCCCccceEEEeCCCCCCccc-CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCc
Q 048829 782 KRLEALPKGLHNLTSLQQLTIIGGELPSLEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMV 860 (976)
Q Consensus 782 ~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~ 860 (976)
+ ++.+|..++.++.|..|+.+.|+|..++. .+.+.+|+.|.+..|........ +. .-.|..||++. |.+.
T Consensus 154 k-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-----l~-~LpLi~lDfSc--Nkis 224 (722)
T KOG0532|consen 154 K-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-----LC-SLPLIRLDFSC--NKIS 224 (722)
T ss_pred c-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-----Hh-CCceeeeeccc--Ccee
Confidence 6 88888888888888888888888888764 34556666666666666554432 12 23455666664 4566
Q ss_pred cCCCCCcccccCCCCCCccccceeeccccCCCccccccc---cCCCCCCeEeecCC
Q 048829 861 SFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSI---VDLQNLTKLTLYDC 913 (976)
Q Consensus 861 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l---~~l~~L~~L~l~~c 913 (976)
.+|..+ ..+..|++|.|.+ |=|++=|..+ +...--|+|++.-|
T Consensus 225 ~iPv~f---------r~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDF---------RKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhh---------hhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 666655 3566666666665 3444444311 22333455566555
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.57 E-value=5.9e-08 Score=75.03 Aligned_cols=57 Identities=32% Similarity=0.531 Sum_probs=40.3
Q ss_pred CcccEEEccCCcccccc-ccccCCCcccEEecCCCCccccc-hhhhccCCccEEecccc
Q 048829 122 QRLRVFSLRGYHISELP-DSVGDLRYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDC 178 (976)
Q Consensus 122 ~~Lr~L~Ls~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~ 178 (976)
++|++|++++|+++.+| ..|.++++|++|++++|.+..+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35777777777777774 46677777777777777777773 45677777777777764
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=3e-08 Score=96.87 Aligned_cols=100 Identities=33% Similarity=0.407 Sum_probs=59.8
Q ss_pred cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccc--------------
Q 048829 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLC-------------- 185 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-------------- 185 (976)
.++.|..||||+|.|+.+..++.-++.+|+|++|+|.|..+ ..+..|.+|+.|||++| .+.++-
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 55666666666666666666666666666666666666655 33666666666666663 333332
Q ss_pred --------hhhhccccCceeecCCCCCccccc--cccCCCCCCceec
Q 048829 186 --------ADMGNLIKLHHLNNSNTDSLEETP--LGIGKLTCLQTLC 222 (976)
Q Consensus 186 --------~~i~~L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~ 222 (976)
+++++|.+|..||+++|+ +..+. .+||+|+.|++|.
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHh
Confidence 345556666666666665 55544 2366666666654
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2.5e-07 Score=71.54 Aligned_cols=58 Identities=31% Similarity=0.458 Sum_probs=51.9
Q ss_pred CcccEEecCCCCccccc-hhhhccCCccEEecccccchhccch-hhhccccCceeecCCCC
Q 048829 145 RYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSNTD 203 (976)
Q Consensus 145 ~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 203 (976)
++|++|++++|++..+| ..|.++++|++|++++ +.+..+|. .|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57999999999999997 4789999999999998 57888865 58999999999999986
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=5.8e-07 Score=105.23 Aligned_cols=93 Identities=25% Similarity=0.358 Sum_probs=82.4
Q ss_pred cccEEEccCCccc-cccccccCCCcccEEecCCCCcc-ccchhhhccCCccEEecccccchhccchhhhccccCceeecC
Q 048829 123 RLRVFSLRGYHIS-ELPDSVGDLRYLRYLNLSGTNIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNS 200 (976)
Q Consensus 123 ~Lr~L~Ls~~~i~-~lp~~~~~L~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 200 (976)
.++.|+|++|.+. .+|..|+.+++|++|+|++|.+. .+|..++++++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999987 56999999999999999999997 789999999999999999975556889999999999999999
Q ss_pred CCCCccccccccCCC
Q 048829 201 NTDSLEETPLGIGKL 215 (976)
Q Consensus 201 ~~~~~~~lp~~i~~L 215 (976)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998666888877653
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=1.7e-06 Score=91.98 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=15.8
Q ss_pred CCCcEEEccCCCCCCccCCCCCCCCCccEEEecCC
Q 048829 747 CQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC 781 (976)
Q Consensus 747 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 781 (976)
++|++|++++|..+. +|..+. .+|+.|+++.|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 456666666664332 232211 35666666554
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=9e-08 Score=96.28 Aligned_cols=231 Identities=17% Similarity=0.129 Sum_probs=152.0
Q ss_pred CCceEEEEcCCCcchh----hhhhhcCCCCCceEEeecCCCccc----cc-------ccccCCCCCcEEEccCCCCCCcc
Q 048829 699 PSVKVLDVYGCPKLES----IAERLDNNTSLETINISNCENLKI----LS-------SGLHNLCQLQQIGIGGCGNLESF 763 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~c~~l~~----lp-------~~~~~l~~L~~L~l~~~~~l~~~ 763 (976)
.+++.++|++|.+-.. +...+.+.++|+..++++ -..+. +| ..+..+|+|++|+||+|..-...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 6899999999987653 455677788888888887 23322 23 34455789999999998543222
Q ss_pred CC----CCCCCCCccEEEecCCcCcccC--------------CCcCCCCCccceEEEeCCCCCCcccC------CCCCcc
Q 048829 764 PE----GGLPCAKLRRLEIYDCKRLEAL--------------PKGLHNLTSLQQLTIIGGELPSLEED------GLPTNL 819 (976)
Q Consensus 764 ~~----~~~~~~~L~~L~l~~c~~l~~~--------------~~~l~~l~~L~~L~l~~~~l~~~~~~------~~~~~L 819 (976)
+. -+.++..|++|.+.+|- ++.. .....+-+.|+++..+.|++...+.. ...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 22 23457899999999987 3322 12345678899999999998876542 245789
Q ss_pred ceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcc----c
Q 048829 820 HSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES----L 895 (976)
Q Consensus 820 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----l 895 (976)
+.+.+..|.+...........+..+++|+.|||.+ | .|..++ .....+++...++|+.|++++|.--.. +
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-N----tft~eg-s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-N----TFTLEG-SVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeeccc-c----hhhhHH-HHHHHHHhcccchheeecccccccccccHHHH
Confidence 99999988776543321124678899999999998 2 222222 234456667888999999999843322 1
Q ss_pred cccc-cCCCCCCeEeecCCCCccccCC----CCC--cccccceeecCCcc
Q 048829 896 SSSI-VDLQNLTKLTLYDCPKLKYFPE----KGL--PSSLLQLRIYRCPL 938 (976)
Q Consensus 896 ~~~l-~~l~~L~~L~l~~c~~l~~i~~----~~~--~~~L~~L~i~~c~~ 938 (976)
-..+ ...|+|+.|.+.+|. ++.=.. ..+ -+.|..|++++|..
T Consensus 262 ~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1122 347899999999864 332110 001 36888899988854
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.5e-06 Score=101.88 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=89.4
Q ss_pred CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829 700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY 779 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (976)
.++.|+|++|.+.+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999987777888889999999999999997777888888889999999999
Q ss_pred CCcCcccCCCcCCCC-CccceEEEeCC
Q 048829 780 DCKRLEALPKGLHNL-TSLQQLTIIGG 805 (976)
Q Consensus 780 ~c~~l~~~~~~l~~l-~~L~~L~l~~~ 805 (976)
+|...+.+|..+... .++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 999888888877543 35556666654
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1.2e-06 Score=61.55 Aligned_cols=38 Identities=32% Similarity=0.508 Sum_probs=22.9
Q ss_pred cccEEEccCCccccccccccCCCcccEEecCCCCcccc
Q 048829 123 RLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTL 160 (976)
Q Consensus 123 ~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l 160 (976)
+|++|++++|+|+.+|..+++|++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 56666666666666655566666666666666666554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.7e-08 Score=98.71 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=37.7
Q ss_pred CceEEEEcCCCcchh-hhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC--CCCCCCCccEE
Q 048829 700 SVKVLDVYGCPKLES-IAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE--GGLPCAKLRRL 776 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L 776 (976)
.|++|||+.-.+... +...+..|.+|+.|.+.+...-..+...+..-..|+.|+++.|..+++... .+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666665544332 223344455555555555433333334444445555555555544433221 12234444444
Q ss_pred EecCCc
Q 048829 777 EIYDCK 782 (976)
Q Consensus 777 ~l~~c~ 782 (976)
+++.|.
T Consensus 266 NlsWc~ 271 (419)
T KOG2120|consen 266 NLSWCF 271 (419)
T ss_pred CchHhh
Confidence 444443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2e-07 Score=91.42 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=38.0
Q ss_pred CCceEEEEcCCCcch-hhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCC
Q 048829 699 PSVKVLDVYGCPKLE-SIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGC 757 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~ 757 (976)
|+|.+|||++|..+. ....++..++.|++|.++.|..+..- --.+...|+|.+|++-+|
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 566667776664433 33455777788888888887655311 123455788888888877
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=8.9e-07 Score=99.09 Aligned_cols=106 Identities=25% Similarity=0.327 Sum_probs=82.0
Q ss_pred cccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhcccc
Q 048829 114 ILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIK 193 (976)
Q Consensus 114 ~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 193 (976)
+...+..++.|.+|++.+|.|..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++++ |.+..++ ++..+++
T Consensus 87 ~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~ 163 (414)
T KOG0531|consen 87 ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDIS-GLESLKS 163 (414)
T ss_pred hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-Ccchhcc-CCccchh
Confidence 34445688899999999999888866588899999999999999888 6677888899999998 5777763 5677889
Q ss_pred CceeecCCCCCccccccc-cCCCCCCceecc
Q 048829 194 LHHLNNSNTDSLEETPLG-IGKLTCLQTLCN 223 (976)
Q Consensus 194 L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~ 223 (976)
|+.+++++|. +..+... ...+.+++.+.+
T Consensus 164 L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 164 LKLLDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred hhcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 9999999988 6666553 455666665543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=9.5e-07 Score=98.85 Aligned_cols=189 Identities=21% Similarity=0.257 Sum_probs=88.4
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
.+|..|++.+|.+.+... .+..+++|++|++++| .++.+ .++..++.|+.|++++| .+..+.. +..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhcchheecccc-ccccc-cchhhccchhhheeccC-cchhccC-CccchhhhcccC
Confidence 455555555554433221 1444555666666653 33333 22344455566666655 3333322 222455555666
Q ss_pred cCCcCcccCCCc-CCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCc--ccEEEEecc
Q 048829 779 YDCKRLEALPKG-LHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS--LRYLLIRGC 855 (976)
Q Consensus 779 ~~c~~l~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~l~~c 855 (976)
++|.. ..+... +..+.+++.+++.+|.+..+........+..+++..|.+..... +..++. |+.+++++
T Consensus 170 ~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~------l~~~~~~~L~~l~l~~- 241 (414)
T KOG0531|consen 170 SYNRI-VDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG------LNELVMLHLRELYLSG- 241 (414)
T ss_pred Ccchh-hhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC------cccchhHHHHHHhccc-
Confidence 55552 222211 34555555555655555555444444444444555555444322 122222 55666665
Q ss_pred CCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecC
Q 048829 856 DDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYD 912 (976)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 912 (976)
+.+..++... ..+..+..|++.+ +.+..+. .+...+.+..+....
T Consensus 242 -n~i~~~~~~~---------~~~~~l~~l~~~~-n~~~~~~-~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 242 -NRISRSPEGL---------ENLKNLPVLDLSS-NRISNLE-GLERLPKLSELWLND 286 (414)
T ss_pred -Cccccccccc---------cccccccccchhh-ccccccc-cccccchHHHhccCc
Confidence 2333332222 3455666666665 4444443 333444444444444
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=4.2e-06 Score=58.78 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=29.8
Q ss_pred CcccEEecCCCCccccchhhhccCCccEEecccccchhccc
Q 048829 145 RYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLC 185 (976)
Q Consensus 145 ~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 185 (976)
++|++|++++|+|+.+|..|++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888888888877888888888888884 566554
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=7.4e-07 Score=89.87 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=84.7
Q ss_pred CCccEEEecCCcCcccCCC-----cCCCCCccceEEEeCCCCCCccc------CCCCCccceeeecCCCCccchhhhcCC
Q 048829 771 AKLRRLEIYDCKRLEALPK-----GLHNLTSLQQLTIIGGELPSLEE------DGLPTNLHSLRIEGNMGIWKSMIERGR 839 (976)
Q Consensus 771 ~~L~~L~l~~c~~l~~~~~-----~l~~l~~L~~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~ 839 (976)
+.|+++....|. +...+. .+...+.|+.+.+..|.|..=.. ...++.|+.||+..|.+..........
T Consensus 157 ~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 467777776665 433332 44556777777777766654221 134677888888888777655443335
Q ss_pred cccccCcccEEEEeccCCCCccCCCCCcccccCCCC-CCccccceeeccccCCCcc-----ccccccCCCCCCeEeecCC
Q 048829 840 GFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTL-PLPASLTSLSIAFFPNLES-----LSSSIVDLQNLTKLTLYDC 913 (976)
Q Consensus 840 ~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~-----l~~~l~~l~~L~~L~l~~c 913 (976)
.+..+++|+.|++++|... . ++ ......++ ...++|+.|.+.+| .++. +...+...+.|+.|++++|
T Consensus 236 aL~s~~~L~El~l~dcll~-~----~G-a~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLE-N----EG-AIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred Hhcccchheeecccccccc-c----cc-HHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 6777889999999997311 1 11 00001111 24789999999994 4532 2225566889999999996
Q ss_pred CC
Q 048829 914 PK 915 (976)
Q Consensus 914 ~~ 915 (976)
..
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 53
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=2.4e-06 Score=74.02 Aligned_cols=92 Identities=25% Similarity=0.268 Sum_probs=72.4
Q ss_pred cccCCcccEEEccCCccccccccc-cCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCce
Q 048829 118 LLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHH 196 (976)
Q Consensus 118 ~~~l~~Lr~L~Ls~~~i~~lp~~~-~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 196 (976)
+.+..+|...+|++|.+..+|..| ...+-++.|+|++|.|..+|..+..++.|+.|+++. |.+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHH
Confidence 336677778888888888887777 445588888888888888888888888888888888 577778888888888888
Q ss_pred eecCCCCCccccccc
Q 048829 197 LNNSNTDSLEETPLG 211 (976)
Q Consensus 197 L~l~~~~~~~~lp~~ 211 (976)
|+..+|. ...+|..
T Consensus 128 Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENA-RAEIDVD 141 (177)
T ss_pred hcCCCCc-cccCcHH
Confidence 8888877 6667655
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=1.1e-05 Score=79.40 Aligned_cols=207 Identities=14% Similarity=0.126 Sum_probs=123.7
Q ss_pred ceEEEEcCCCcch--hhhhhhcCCCCCceEEeecCCCcc--cccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEE
Q 048829 701 VKVLDVYGCPKLE--SIAERLDNNTSLETINISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL 776 (976)
Q Consensus 701 L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (976)
++.|.+.+|.+-. .....-..++.++++|+.+|.... ++...+.++|.|++|+++.|+.-..|...-.+..+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 4455555554322 222223356778889998854332 345667789999999999886544443222567789999
Q ss_pred EecCCcCc-ccCCCcCCCCCccceEEEeCCCCCCcccC-----CCCCccceeeecCCCCccchhhhcCCcccccCcccEE
Q 048829 777 EIYDCKRL-EALPKGLHNLTSLQQLTIIGGELPSLEED-----GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL 850 (976)
Q Consensus 777 ~l~~c~~l-~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 850 (976)
-+.|-... +.....+..+|.+++|.++.|.+..+..+ ..-+.++.|...+|....-...- .....+|++..+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSV 204 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchhe
Confidence 88875421 22333567888899999888876655432 23346777777777644322111 223456788877
Q ss_pred EEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc--cccCCCCCCeEeecCCCCcccc
Q 048829 851 LIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS--SIVDLQNLTKLTLYDCPKLKYF 919 (976)
Q Consensus 851 ~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~l~~c~~l~~i 919 (976)
-+..| -+.+...+. .+..++.+.-|.++. +++.+..+ .+..++.|..|.+.+.|....+
T Consensus 205 ~v~e~--PlK~~s~ek-------~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 205 FVCEG--PLKTESSEK-------GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eeecC--cccchhhcc-------cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 77763 222222221 123556666777777 56655544 5667777777777776655544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=3.4e-06 Score=73.11 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=85.5
Q ss_pred cCCcccEEEccCCccccccccc---cCCCcccEEecCCCCccccchhhhc-cCCccEEecccccchhccchhhhccccCc
Q 048829 120 KLQRLRVFSLRGYHISELPDSV---GDLRYLRYLNLSGTNIRTLPESVNK-LYNLHSLLLEDCDRLKKLCADMGNLIKLH 195 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~---~~L~~L~~L~L~~n~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 195 (976)
.-+.+..+||+.|.+..+++.. ....+|...+|++|.+..+|+.|.. ..-..+|++++ +.+.++|.++..++.|+
T Consensus 25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR 103 (177)
T ss_pred HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence 3455677899999887776554 5567888889999999999998865 45999999999 79999999999999999
Q ss_pred eeecCCCCCccccccccCCCCCCceec
Q 048829 196 HLNNSNTDSLEETPLGIGKLTCLQTLC 222 (976)
Q Consensus 196 ~L~l~~~~~~~~lp~~i~~L~~L~~L~ 222 (976)
.|+++.|. +...|+-|..|.+|-.|.
T Consensus 104 ~lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hcccccCc-cccchHHHHHHHhHHHhc
Confidence 99999998 888888888787777774
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=1.8e-06 Score=94.86 Aligned_cols=122 Identities=24% Similarity=0.190 Sum_probs=88.0
Q ss_pred cceEEEeCCCCCCccc-CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCC
Q 048829 797 LQQLTIIGGELPSLEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTL 875 (976)
Q Consensus 797 L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~ 875 (976)
|.+.+.+.|.+..+.. ..+++.|+.|++++|+..... .+..|+.|++|||++ |.+..+|.-.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsy--N~L~~vp~l~--------- 228 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSY--NCLRHVPQLS--------- 228 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH------HHHhccccccccccc--chhccccccc---------
Confidence 4444445566655433 356788999999999988764 478899999999998 4566666543
Q ss_pred CCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCC---CCcccccceeecCCcc
Q 048829 876 PLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK---GLPSSLLQLRIYRCPL 938 (976)
Q Consensus 876 ~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~---~~~~~L~~L~i~~c~~ 938 (976)
..--.|+.|.+++ |.++.+- ++.++.+|+.||+++ +-+....+- +...+|..|.+.|+|.
T Consensus 229 ~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 229 MVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 1223499999999 7888887 888999999999998 445444332 2247889999999875
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=6.2e-05 Score=87.82 Aligned_cols=60 Identities=22% Similarity=0.370 Sum_probs=32.4
Q ss_pred ccc-cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccc--hhhhccCCccEEeccc
Q 048829 117 KLL-KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP--ESVNKLYNLHSLLLED 177 (976)
Q Consensus 117 ~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~ 177 (976)
.++ ++++|+.||+|+++++.+ ..+++|++|++|.+++-.+..-. ..+.+|++|++||+|.
T Consensus 167 ~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 167 QLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 344 555666666666655555 45555566666555554444221 2445556666666554
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=4.1e-06 Score=92.24 Aligned_cols=119 Identities=25% Similarity=0.176 Sum_probs=71.7
Q ss_pred cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchh-hhccccCceee
Q 048829 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLN 198 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 198 (976)
..-.|.+-+.++|.+..+..++.-++.|+.|||++|++.+. ..+..|.+|++|||++ |.+..+|.- ..... |+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhccccccccccc-chhccccccchhhhh-heeee
Confidence 34456666777777766666666677777777777777665 4666777777777777 466666642 33333 77777
Q ss_pred cCCCCCccccccccCCCCCCceecceEecCCCCCCchhhhccccc
Q 048829 199 NSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHL 243 (976)
Q Consensus 199 l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L 243 (976)
+++|. +.++ .++.+|.+|+.|++..+-......+.-|..|..|
T Consensus 239 lrnN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 239 LRNNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred ecccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 77766 4444 4566666666665544433333333333333333
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=8.7e-05 Score=73.31 Aligned_cols=85 Identities=13% Similarity=0.030 Sum_probs=49.2
Q ss_pred hccccccEEEeeccCCcc--cCccccCCCCCccEEEeecCCCCC-CCCCc-CCCCCCcEEEEccCCCCCCCCCccccCCC
Q 048829 531 ELSCRLEYLRLRYCEGLV--KLPQSSLSLSSLKEIEIYKCSSLV-SFPEV-ALPSKLKKIEIRECDALKSLPEPWMCDTS 606 (976)
Q Consensus 531 ~~~~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~l 606 (976)
...+.++.++|.+|.+.+ .+...+.++|.|+.|+++. |.+. .+... .-..+|++|-+.+.. +.--....+...+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDL 145 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcc
Confidence 344677778887776543 3444456788888888876 4443 22222 224577777777665 2222222222466
Q ss_pred CcccEEEEecC
Q 048829 607 SSLEILKIWDC 617 (976)
Q Consensus 607 ~~L~~L~l~~~ 617 (976)
|.++.|++++|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 77777777765
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00031 Score=65.75 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=80.5
Q ss_pred cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhh-ccCCccEEecccccchhccch--hhhccccCce
Q 048829 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVN-KLYNLHSLLLEDCDRLKKLCA--DMGNLIKLHH 196 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~ 196 (976)
-....-.+||++|.+..+ ..|..++.|.+|.|.+|.|+.|-..+. -+.+|++|.|.+ |.+.++.. .+..+++|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccce
Confidence 455677889999998876 567889999999999999999855554 467899999998 57776632 3677889999
Q ss_pred eecCCCCCccccccc----cCCCCCCceecceEec
Q 048829 197 LNNSNTDSLEETPLG----IGKLTCLQTLCNFVVG 227 (976)
Q Consensus 197 L~l~~~~~~~~lp~~----i~~L~~L~~L~~~~~~ 227 (976)
|.+-+|. +..-+.- +.++++|++|+...+.
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9999987 5555422 7888888888654443
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.22 E-value=0.00017 Score=84.26 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=41.6
Q ss_pred CcccEEecCCCCcc-c-cchhhhc-cCCccEEecccccchhc--cchhhhccccCceeecCCCCCccccccccCCCCCCc
Q 048829 145 RYLRYLNLSGTNIR-T-LPESVNK-LYNLHSLLLEDCDRLKK--LCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQ 219 (976)
Q Consensus 145 ~~L~~L~L~~n~i~-~-lp~~i~~-L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~ 219 (976)
.+||+||++|...- . =|..++. |+.|+.|.+++ ..+.. .-.-..+.++|+.||+++++ +..+ .++++|++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 36666666664322 1 1344443 66666666665 22211 11224456677777777766 5555 5667777777
Q ss_pred eecc
Q 048829 220 TLCN 223 (976)
Q Consensus 220 ~L~~ 223 (976)
+|..
T Consensus 199 ~L~m 202 (699)
T KOG3665|consen 199 VLSM 202 (699)
T ss_pred HHhc
Confidence 6643
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.20 E-value=4.9e-05 Score=88.13 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=21.2
Q ss_pred CCCCccEEEeecCCCCCCC---CCcCCCCCCcEEEEcc
Q 048829 556 SLSSLKEIEIYKCSSLVSF---PEVALPSKLKKIEIRE 590 (976)
Q Consensus 556 ~l~~L~~L~l~~c~~l~~l---~~~~~~~~L~~L~l~~ 590 (976)
.++.|+.|.+.+|..+... +.....+.|+.|++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 3677777777777666642 2233356666666666
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.15 E-value=5.7e-05 Score=87.59 Aligned_cols=64 Identities=25% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc---cCCCCCcEEeeccCcCc
Q 048829 580 PSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV---QLPLSLKRLDIQRCNKI 643 (976)
Q Consensus 580 ~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l 643 (976)
+++|+.|+++.|..+++.........+++|+.|.+.+|..++...-. ..+++|++|+++.|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45555555555554444433333234556666665555543322111 23344666666655544
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.75 E-value=0.001 Score=65.16 Aligned_cols=209 Identities=17% Similarity=0.083 Sum_probs=130.0
Q ss_pred CCCceEEEEcCCCcchhh----hhhhcCCCCCceEEeecCCCccc----cc-------ccccCCCCCcEEEccCCCCCCc
Q 048829 698 PPSVKVLDVYGCPKLESI----AERLDNNTSLETINISNCENLKI----LS-------SGLHNLCQLQQIGIGGCGNLES 762 (976)
Q Consensus 698 ~~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~c~~l~~----lp-------~~~~~l~~L~~L~l~~~~~l~~ 762 (976)
...++.++||+|.+.... ...+.+-.+|+..++++- ..+. +| ..+-.+|+|++.++++|..-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 378999999999887654 455667788888888762 2221 22 3445689999999999976555
Q ss_pred cCCC----CCCCCCccEEEecCCcCcccCCC--------------cCCCCCccceEEEeCCCCCCcccC------CCCCc
Q 048829 763 FPEG----GLPCAKLRRLEIYDCKRLEALPK--------------GLHNLTSLQQLTIIGGELPSLEED------GLPTN 818 (976)
Q Consensus 763 ~~~~----~~~~~~L~~L~l~~c~~l~~~~~--------------~l~~l~~L~~L~l~~~~l~~~~~~------~~~~~ 818 (976)
+|.. +..-..|++|.+++|. ++.+.. ...+-|.|++.....|++...+.. .+-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 5543 3446789999999886 544422 224568899998888988876542 12258
Q ss_pred cceeeecCCCCccchhhh-cCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc
Q 048829 819 LHSLRIEGNMGIWKSMIE-RGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS 897 (976)
Q Consensus 819 L~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 897 (976)
|+.+.+..|.+-.....- ....+..+++|+.||+.++ . |+..+ ++-...++..-+.|+.|.+.+|---..=..
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN--t---ft~~g-S~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN--T---FTLEG-SRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc--c---hhhhh-HHHHHHHhcccchhhhccccchhhccccHH
Confidence 899999888775431100 0023566788999998882 1 21111 112223333446678888888733221111
Q ss_pred -cc-----cCCCCCCeEeecCCC
Q 048829 898 -SI-----VDLQNLTKLTLYDCP 914 (976)
Q Consensus 898 -~l-----~~l~~L~~L~l~~c~ 914 (976)
.+ ...|+|..|-..++.
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHHHhhhhcCCCccccccchhh
Confidence 11 235667777666643
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.70 E-value=0.0017 Score=63.68 Aligned_cols=95 Identities=23% Similarity=0.273 Sum_probs=63.8
Q ss_pred cccccccCCcccEEEccCCccc-----cccccccCCCcccEEecCCCCcc----ccch-------hhhccCCccEEeccc
Q 048829 114 ILPKLLKLQRLRVFSLRGYHIS-----ELPDSVGDLRYLRYLNLSGTNIR----TLPE-------SVNKLYNLHSLLLED 177 (976)
Q Consensus 114 ~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~~~~L~~L~~L~L~~n~i~----~lp~-------~i~~L~~L~~L~L~~ 177 (976)
+...+..+..+..+|||||-|. .+...|.+-++|++-+++.-... .+|+ .+-++++|+..+||.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 3444446888899999999875 35566777788888888764221 3333 455678888888888
Q ss_pred ccchhccchh----hhccccCceeecCCCCCccccc
Q 048829 178 CDRLKKLCAD----MGNLIKLHHLNNSNTDSLEETP 209 (976)
Q Consensus 178 ~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~lp 209 (976)
|-.-.+.|.. |++-+.|.||.+++|. ++.+.
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 5433444443 5666788888888887 55443
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.47 E-value=0.0011 Score=38.56 Aligned_cols=18 Identities=50% Similarity=0.971 Sum_probs=7.9
Q ss_pred ccEEecCCCCccccchhh
Q 048829 147 LRYLNLSGTNIRTLPESV 164 (976)
Q Consensus 147 L~~L~L~~n~i~~lp~~i 164 (976)
||+|||++|+++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444433
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.0016 Score=64.01 Aligned_cols=59 Identities=36% Similarity=0.484 Sum_probs=24.5
Q ss_pred cCCcccEEEccCC--ccc-cccccccCCCcccEEecCCCCcccc--chhhhccCCccEEecccc
Q 048829 120 KLQRLRVFSLRGY--HIS-ELPDSVGDLRYLRYLNLSGTNIRTL--PESVNKLYNLHSLLLEDC 178 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~--~i~-~lp~~~~~L~~L~~L~L~~n~i~~l--p~~i~~L~~L~~L~L~~~ 178 (976)
.+++|+.|++|.| ++. .++-....+++|++|+|++|+|+.+ -.....+.+|..||+.+|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 4445555555554 222 2222233335555555555544432 012334444444444443
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.39 E-value=0.0039 Score=58.68 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=59.0
Q ss_pred ccccccCCcccEEEccCCccccccccc-cCCCcccEEecCCCCccccc--hhhhccCCccEEecccccchhccch----h
Q 048829 115 LPKLLKLQRLRVFSLRGYHISELPDSV-GDLRYLRYLNLSGTNIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA----D 187 (976)
Q Consensus 115 ~~~~~~l~~Lr~L~Ls~~~i~~lp~~~-~~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~ 187 (976)
.+.+..++.|..|.|+.|+|+.+-..+ .-+++|..|.|.+|+|..+- .-+..++.|++|.+-+ +.+...+. .
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG-NPVEHKKNYRLYV 135 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC-CchhcccCceeEE
Confidence 344447778888888888888774444 44567888888888777652 3456677888887777 34444332 2
Q ss_pred hhccccCceeecCCCC
Q 048829 188 MGNLIKLHHLNNSNTD 203 (976)
Q Consensus 188 i~~L~~L~~L~l~~~~ 203 (976)
+.++++|++||.....
T Consensus 136 l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEecCcceEeehhhhh
Confidence 6778888888877654
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.10 E-value=0.0032 Score=36.55 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=18.9
Q ss_pred cccEEEccCCccccccccccCC
Q 048829 123 RLRVFSLRGYHISELPDSVGDL 144 (976)
Q Consensus 123 ~Lr~L~Ls~~~i~~lp~~~~~L 144 (976)
+|++|||++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.00087 Score=65.85 Aligned_cols=59 Identities=31% Similarity=0.358 Sum_probs=39.0
Q ss_pred cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccc--hhhhccCCccEEeccccc
Q 048829 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP--ESVNKLYNLHSLLLEDCD 179 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~ 179 (976)
+|+.|.||.||-|.|+.+ ..+..+++|+.|+|+.|.|..+- .-+.+|++|++|.|..|.
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 777777777777777766 45667777777777777776652 234566666666665543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.00069 Score=66.54 Aligned_cols=101 Identities=21% Similarity=0.277 Sum_probs=74.0
Q ss_pred cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchh--hhccccCcee
Q 048829 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD--MGNLIKLHHL 197 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L 197 (976)
.+.+.+-|++-|+.+..+ .-..+++.|++|.|+-|.|+.+ ..+..+++|+.|.|.. |.+..+-+- +.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence 455677788888888876 3457899999999999999988 7788999999999998 567666332 6788888988
Q ss_pred ecCCCCCccccccc-----cCCCCCCceecc
Q 048829 198 NNSNTDSLEETPLG-----IGKLTCLQTLCN 223 (976)
Q Consensus 198 ~l~~~~~~~~lp~~-----i~~L~~L~~L~~ 223 (976)
.|..|.-...-+.. +.-|++|+.|+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 88877644443322 445666666643
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.80 E-value=0.0071 Score=59.67 Aligned_cols=106 Identities=23% Similarity=0.229 Sum_probs=69.1
Q ss_pred cCCcccEEEccCCccccccccccCCCcccEEecCCC--Ccc-ccchhhhccCCccEEecccccchhccc--hhhhccccC
Q 048829 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGT--NIR-TLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLIKL 194 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L 194 (976)
.+..|..|++.+..++.+ ..+..|++|++|.++.| .+. .++-...++.+|++|++++ |+++.+- .....+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccchhhhhcch
Confidence 556666666666666554 45667888888888888 443 4444455668888888888 4665431 125667777
Q ss_pred ceeecCCCCCcccccc----ccCCCCCCceecceEecC
Q 048829 195 HHLNNSNTDSLEETPL----GIGKLTCLQTLCNFVVGK 228 (976)
Q Consensus 195 ~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~~~~~~ 228 (976)
..|+++.|. ...+-. .|.-|++|..|+...+..
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhccccccccCC
Confidence 888888877 333321 166678888887665543
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.36 E-value=0.00093 Score=63.83 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=72.8
Q ss_pred ccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCce
Q 048829 117 KLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHH 196 (976)
Q Consensus 117 ~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 196 (976)
++..++..++||++.|++..+-..|..++.|..||++.|.|..+|..++.+..++.+++.. |..+..|.++++++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence 3447778889999998888777788888888999999998888899999888888888877 678888888999999998
Q ss_pred eecCCCC
Q 048829 197 LNNSNTD 203 (976)
Q Consensus 197 L~l~~~~ 203 (976)
+++-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8888776
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.32 E-value=0.041 Score=50.14 Aligned_cols=117 Identities=11% Similarity=0.242 Sum_probs=52.8
Q ss_pred cccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccc-hh
Q 048829 87 DLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLP-ES 163 (976)
Q Consensus 87 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp-~~ 163 (976)
.|.++++|+.+.+... ...+....| .++.|+.+.+.++ +..+ ...|.+++.|+.+.+.. .+..++ ..
T Consensus 7 ~F~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred HHhCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence 3556666776654321 235566666 6667777777664 6655 34566676777777755 455553 34
Q ss_pred hhccCCccEEecccccchhccchh-hhccccCceeecCCCCCccccccc-cCCCCCC
Q 048829 164 VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNTDSLEETPLG-IGKLTCL 218 (976)
Q Consensus 164 i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L 218 (976)
|.+..+|+.+++.. .+..++.. |.+. +|+.+.+..+ +..++.. |.+.++|
T Consensus 77 F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 77 FSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccccccccccCc--cccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 56677777777765 25555443 6665 7777766542 4555444 4444333
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.31 E-value=0.024 Score=30.38 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=5.2
Q ss_pred cccEEecCCCCcccc
Q 048829 146 YLRYLNLSGTNIRTL 160 (976)
Q Consensus 146 ~L~~L~L~~n~i~~l 160 (976)
+||+|+|++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.57 E-value=0.0054 Score=58.83 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=77.4
Q ss_pred ccccc-ccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCcccccccc
Q 048829 134 ISELP-DSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGI 212 (976)
Q Consensus 134 i~~lp-~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i 212 (976)
++++| ..+...+.-++||++.|++..+-..|..++.|..||++. +.+..+|.+++.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 34453 466778899999999999988888899999999999999 7999999999999999999998887 99999999
Q ss_pred CCCCCCceec
Q 048829 213 GKLTCLQTLC 222 (976)
Q Consensus 213 ~~L~~L~~L~ 222 (976)
+++++++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999999874
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.57 E-value=0.046 Score=29.31 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=11.5
Q ss_pred CcccEEEccCCcccccc
Q 048829 122 QRLRVFSLRGYHISELP 138 (976)
Q Consensus 122 ~~Lr~L~Ls~~~i~~lp 138 (976)
++||+|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.52 E-value=0.16 Score=46.12 Aligned_cols=102 Identities=14% Similarity=0.290 Sum_probs=63.6
Q ss_pred ccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccch-hhhccCCccEEecccccchhccchh-h
Q 048829 113 SILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCAD-M 188 (976)
Q Consensus 113 ~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i 188 (976)
.++...| +.++|+.+.+.. .+..+ ..+|..+.+|+.+.+.++ +..++. .|.+..+|+.+.+.. .+..++.. |
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc
Confidence 3556677 888999999985 57777 567888989999999885 777754 578888999999975 45556544 7
Q ss_pred hccccCceeecCCCCCccccccc-cCCCCCCcee
Q 048829 189 GNLIKLHHLNNSNTDSLEETPLG-IGKLTCLQTL 221 (976)
Q Consensus 189 ~~L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L 221 (976)
..+++|+.+++..+ +..++.. +.+. +|+.+
T Consensus 78 ~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp TT-TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred cccccccccccCcc--ccEEchhhhcCC-CceEE
Confidence 78999999999764 5666655 6665 66665
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=0.021 Score=54.01 Aligned_cols=88 Identities=19% Similarity=0.353 Sum_probs=57.4
Q ss_pred ccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc
Q 048829 818 NLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS 897 (976)
Q Consensus 818 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 897 (976)
.++.+|-+++.+..... ..+.+++.++.|.+..|. ......-+. .-...++|+.|+|++|+.+++-.-
T Consensus 102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck-~~dD~~L~~-------l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCK-YFDDWCLER-------LGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eEEEEecCCchHHHHHH----HHHhccchhhhheecccc-chhhHHHHH-------hcccccchheeeccCCCeechhHH
Confidence 45666666666665555 457778888888888853 222211110 013568899999999998877644
Q ss_pred -cccCCCCCCeEeecCCCCcc
Q 048829 898 -SIVDLQNLTKLTLYDCPKLK 917 (976)
Q Consensus 898 -~l~~l~~L~~L~l~~c~~l~ 917 (976)
++..+++|+.|.+++.+.+.
T Consensus 170 ~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHHhhhhHHHHhcCchhhh
Confidence 67788888888888855443
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.62 E-value=0.041 Score=52.14 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=48.9
Q ss_pred CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-ccccc-CCCCCcEEEccCCCCCCccCC-CCCCCCCccEE
Q 048829 700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLH-NLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRL 776 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~-~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 776 (976)
.++.+|-+++.+...-.+-+.++++++.|.+.+|.....- -+.++ -.++|+.|+|++|+.+++..- .+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4666777777666666667777777888888877766643 11111 256677777777766654321 12335566666
Q ss_pred EecC
Q 048829 777 EIYD 780 (976)
Q Consensus 777 ~l~~ 780 (976)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6555
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.59 E-value=0.16 Score=30.90 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=12.4
Q ss_pred CCcccEEecCCCCccccchh
Q 048829 144 LRYLRYLNLSGTNIRTLPES 163 (976)
Q Consensus 144 L~~L~~L~L~~n~i~~lp~~ 163 (976)
|++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35566666666666666554
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.59 E-value=0.16 Score=30.90 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=12.4
Q ss_pred CCcccEEecCCCCccccchh
Q 048829 144 LRYLRYLNLSGTNIRTLPES 163 (976)
Q Consensus 144 L~~L~~L~L~~n~i~~lp~~ 163 (976)
|++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35566666666666666554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.91 E-value=0.53 Score=28.54 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=17.9
Q ss_pred CCcccEEEccCCccccccccc
Q 048829 121 LQRLRVFSLRGYHISELPDSV 141 (976)
Q Consensus 121 l~~Lr~L~Ls~~~i~~lp~~~ 141 (976)
+++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999997654
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.91 E-value=0.53 Score=28.54 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=17.9
Q ss_pred CCcccEEEccCCccccccccc
Q 048829 121 LQRLRVFSLRGYHISELPDSV 141 (976)
Q Consensus 121 l~~Lr~L~Ls~~~i~~lp~~~ 141 (976)
+++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999997654
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.66 E-value=2.1 Score=25.93 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=10.6
Q ss_pred CCcccEEecCCCCcccc
Q 048829 144 LRYLRYLNLSGTNIRTL 160 (976)
Q Consensus 144 L~~L~~L~L~~n~i~~l 160 (976)
+++|++|+|++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35666777777766544
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.53 E-value=2 Score=25.96 Aligned_cols=17 Identities=41% Similarity=0.682 Sum_probs=11.7
Q ss_pred cccEEecCCCCccccch
Q 048829 146 YLRYLNLSGTNIRTLPE 162 (976)
Q Consensus 146 ~L~~L~L~~n~i~~lp~ 162 (976)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777777665
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.70 E-value=2.4 Score=25.64 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=8.0
Q ss_pred CCCCeEeecCCCCcc
Q 048829 903 QNLTKLTLYDCPKLK 917 (976)
Q Consensus 903 ~~L~~L~l~~c~~l~ 917 (976)
++|++|++++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555544
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=57.79 E-value=5 Score=23.60 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=11.8
Q ss_pred CCceEEEEcCCCcchhhhhh
Q 048829 699 PSVKVLDVYGCPKLESIAER 718 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~ 718 (976)
++|++|+|++|++.+.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 56777888887766555443
No 87
>PF14162 YozD: YozD-like protein
Probab=57.18 E-value=11 Score=26.66 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHhCCCceee
Q 048829 4 TGEDLGLEIFKELHSRSFFQQS 25 (976)
Q Consensus 4 ~~ed~g~~~~~~L~~r~l~~~~ 25 (976)
.-|++|+=+|.+|+.|+++-..
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTE 30 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcH
Confidence 3589999999999999998653
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.15 E-value=10 Score=23.43 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=9.1
Q ss_pred CcccEEecCCCCcc
Q 048829 145 RYLRYLNLSGTNIR 158 (976)
Q Consensus 145 ~~L~~L~L~~n~i~ 158 (976)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.05 E-value=0.46 Score=53.51 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=83.1
Q ss_pred CCceEEEEcCCCcch----hhhhhhcCCCCCceEEeecCCCccc----cccccc----CCCCCcEEEccCCCCCCcc---
Q 048829 699 PSVKVLDVYGCPKLE----SIAERLDNNTSLETINISNCENLKI----LSSGLH----NLCQLQQIGIGGCGNLESF--- 763 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~c~~l~~----lp~~~~----~l~~L~~L~l~~~~~l~~~--- 763 (976)
..+++|++..|.... .+...+.....++.++++.|..... ++..+. ...++++|++.+|......
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 456667777775544 3455566677777777777655321 123333 3667777777777322110
Q ss_pred -CCCCCCCCC-ccEEEecCCcCccc----CCCcCCCC-CccceEEEeCCCCCCcccC------CCCCccceeeecCCCCc
Q 048829 764 -PEGGLPCAK-LRRLEIYDCKRLEA----LPKGLHNL-TSLQQLTIIGGELPSLEED------GLPTNLHSLRIEGNMGI 830 (976)
Q Consensus 764 -~~~~~~~~~-L~~L~l~~c~~l~~----~~~~l~~l-~~L~~L~l~~~~l~~~~~~------~~~~~L~~L~l~~~~~~ 830 (976)
-......++ +.++++..|..-.. +...+..+ ..++.++++.|.|...... ..++.++++.+++|++.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 001122233 56677777663222 22234444 6677777777777654322 22457777777777776
Q ss_pred cchhhhcCCcccccCcccEEEEec
Q 048829 831 WKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 831 ~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
.......-..+..-..+..+.+.+
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 304 DYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred cHHHHHHHHHhhhcccchhhhccc
Confidence 554422112233334455555554
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=42.89 E-value=32 Score=24.02 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=21.2
Q ss_pred CCCCeEeecCCCCccccCCCCCcccccceeecC
Q 048829 903 QNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYR 935 (976)
Q Consensus 903 ~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~ 935 (976)
+++++|.+.+ .--+.+....+|++|++|.+..
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEeeC
Confidence 4677888743 2234555667888888888754
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.73 E-value=38 Score=38.05 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=8.7
Q ss_pred CccEEEecCCcCcccC
Q 048829 772 KLRRLEIYDCKRLEAL 787 (976)
Q Consensus 772 ~L~~L~l~~c~~l~~~ 787 (976)
.|++|-+.||+..+.+
T Consensus 271 ~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTTF 286 (585)
T ss_pred CHHHeeecCCccccch
Confidence 5566666666544443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.64 E-value=45 Score=37.51 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=35.6
Q ss_pred CCceEEEEcCCCcc--hhhhhhhcCCCCCceEEeecCCCccccccccc--CCCCCcEEEccCCCCCCcc
Q 048829 699 PSVKVLDVYGCPKL--ESIAERLDNNTSLETINISNCENLKILSSGLH--NLCQLQQIGIGGCGNLESF 763 (976)
Q Consensus 699 ~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~l~~L~~L~l~~~~~l~~~ 763 (976)
|.+..+.|++|++. +.+.......++|..|+|++|.........+. ....|++|.+.+|+.-+.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 55666667776543 23344455666777777777522221111111 1456777777777665544
No 93
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=20.48 E-value=1.4e+02 Score=25.09 Aligned_cols=36 Identities=6% Similarity=0.090 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCceeecCC-CCcEEEchhHHHH
Q 048829 6 EDLGLEIFKELHSRSFFQQSSND-ASRFVMHDLINDL 41 (976)
Q Consensus 6 ed~g~~~~~~L~~r~l~~~~~~~-~~~~~mHDlv~dl 41 (976)
.++|..|+++|++++|+...+++ ...|..-|-=.++
T Consensus 45 y~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~f 81 (95)
T COG3432 45 YKRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRF 81 (95)
T ss_pred HHHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHH
Confidence 47899999999999987776543 3357776654444
Done!