Query 048829
Match_columns 976
No_of_seqs 663 out of 4520
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 00:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.3E-53 2.1E-57 511.9 31.0 247 699-960 490-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-48 3.6E-53 474.8 30.6 629 114-917 69-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-41 1.2E-45 406.0 47.4 375 500-937 221-620 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-41 7.2E-46 408.0 42.4 564 122-918 25-624 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.3E-38 4.6E-43 378.3 37.4 203 535-809 255-463 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-38 1.3E-42 374.4 38.2 288 535-915 262-557 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.5E-38 1.2E-42 374.7 31.5 510 92-831 32-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 5.8E-38 2E-42 372.8 32.7 98 123-222 34-135 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-34 5E-39 354.5 41.2 258 534-854 290-556 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 1.2E-33 4E-38 333.5 37.2 86 122-209 28-116 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-33 1E-37 342.8 39.3 105 699-808 451-560 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-33 2.2E-37 325.3 35.7 144 699-854 361-506 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 2.8E-33 9.7E-38 330.3 31.0 123 92-223 28-156 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 9E-33 3.1E-37 324.1 27.1 207 112-363 18-233 (549)
15 4eco_A Uncharacterized protein 100.0 6.3E-33 2.1E-37 328.2 23.2 69 154-223 192-280 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-32 1.7E-36 315.1 30.4 224 534-834 247-485 (520)
17 4eco_A Uncharacterized protein 100.0 6.9E-33 2.4E-37 327.9 19.0 364 301-831 202-601 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 5.4E-32 1.9E-36 324.1 26.3 147 155-363 435-605 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 3E-31 1E-35 308.6 30.4 104 113-222 14-121 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 1E-31 3.4E-36 321.8 24.5 239 534-834 595-844 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 8.8E-31 3E-35 313.8 29.3 110 699-809 469-581 (635)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-29 8.2E-34 301.4 32.8 133 699-831 445-581 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.8E-29 2.3E-33 290.9 32.8 133 699-834 377-514 (562)
24 1jl5_A Outer protein YOPM; leu 100.0 2.6E-29 8.8E-34 283.5 25.8 83 116-210 5-88 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.2E-29 1.8E-33 291.9 27.6 105 113-223 45-153 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 8.3E-29 2.8E-33 279.4 23.6 95 534-640 173-267 (454)
27 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-27 4.5E-32 269.9 24.5 87 115-208 35-121 (457)
28 1o6v_A Internalin A; bacterial 99.9 1.4E-25 4.9E-30 256.0 29.2 96 120-221 44-139 (466)
29 3v47_A TOLL-like receptor 5B a 99.9 1.8E-25 6.3E-30 255.2 28.1 265 534-833 129-411 (455)
30 3v47_A TOLL-like receptor 5B a 99.9 6.3E-25 2.2E-29 250.8 25.7 207 699-920 180-412 (455)
31 1o6v_A Internalin A; bacterial 99.9 6.2E-24 2.1E-28 242.4 30.0 303 534-921 90-392 (466)
32 4fmz_A Internalin; leucine ric 99.9 3.9E-24 1.3E-28 234.5 23.9 194 719-937 151-344 (347)
33 2id5_A Lingo-1, leucine rich r 99.9 6.4E-24 2.2E-28 243.7 25.8 295 533-890 31-331 (477)
34 4fmz_A Internalin; leucine ric 99.9 7.1E-24 2.4E-28 232.4 24.2 301 534-914 44-344 (347)
35 3bz5_A Internalin-J, INLJ; leu 99.9 4.3E-23 1.5E-27 232.9 27.7 313 534-919 42-354 (457)
36 2id5_A Lingo-1, leucine rich r 99.9 5.5E-23 1.9E-27 235.9 26.5 305 546-916 22-333 (477)
37 3o6n_A APL1; leucine-rich repe 99.9 3.1E-23 1E-27 231.1 22.4 211 699-938 141-351 (390)
38 3o6n_A APL1; leucine-rich repe 99.9 1.4E-22 4.8E-27 225.8 24.9 292 495-834 63-356 (390)
39 3oja_B Anopheles plasmodium-re 99.9 1.5E-22 5.2E-27 238.1 22.0 210 699-937 147-356 (597)
40 3oja_B Anopheles plasmodium-re 99.9 6.8E-22 2.3E-26 232.6 24.6 292 495-834 69-362 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-21 7.1E-26 210.9 23.2 292 558-914 33-331 (332)
42 1xku_A Decorin; proteoglycan, 99.9 5.5E-21 1.9E-25 207.5 25.8 292 558-913 31-329 (330)
43 1xku_A Decorin; proteoglycan, 99.9 6.6E-21 2.3E-25 206.8 24.9 265 534-854 52-328 (330)
44 4fcg_A Uncharacterized protein 99.9 2.8E-21 9.4E-26 208.5 18.1 197 699-912 104-310 (328)
45 1ogq_A PGIP-2, polygalacturona 99.9 5.7E-22 2E-26 212.7 11.6 225 699-939 76-304 (313)
46 4fcg_A Uncharacterized protein 99.9 6.7E-21 2.3E-25 205.5 19.7 227 533-811 80-317 (328)
47 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-21 4.7E-26 209.7 13.7 251 534-832 50-306 (313)
48 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-20 8E-25 202.6 21.7 218 699-938 78-306 (332)
49 3ogk_B Coronatine-insensitive 99.8 5E-22 1.7E-26 235.1 4.0 206 699-919 293-528 (592)
50 3ogk_B Coronatine-insensitive 99.8 6.7E-22 2.3E-26 234.0 1.0 109 699-807 378-500 (592)
51 1z7x_W Ribonuclease inhibitor; 99.8 7.3E-23 2.5E-27 234.2 -7.4 371 501-937 3-438 (461)
52 3g06_A SSPH2 (leucine-rich rep 99.8 9.6E-19 3.3E-23 202.9 26.4 215 534-830 40-254 (622)
53 3zyj_A Leucine-rich repeat-con 99.8 9.1E-19 3.1E-23 198.0 23.1 199 699-914 88-290 (440)
54 3zyi_A Leucine-rich repeat-con 99.8 9.3E-19 3.2E-23 198.7 22.1 200 699-914 99-301 (452)
55 2z80_A TOLL-like receptor 2, v 99.8 2.8E-19 9.6E-24 195.9 15.9 205 700-917 101-315 (353)
56 2z80_A TOLL-like receptor 2, v 99.8 4.3E-19 1.5E-23 194.4 17.3 225 699-937 76-312 (353)
57 2z66_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 187.8 18.7 198 562-810 11-214 (306)
58 2p1m_B Transport inhibitor res 99.8 7.3E-21 2.5E-25 225.3 1.3 395 495-915 60-518 (594)
59 3g06_A SSPH2 (leucine-rich rep 99.8 8.1E-18 2.8E-22 195.1 26.1 260 558-918 40-299 (622)
60 3o53_A Protein LRIM1, AGAP0063 99.8 9.4E-20 3.2E-24 196.1 8.9 237 533-854 33-271 (317)
61 1ozn_A Reticulon 4 receptor; N 99.8 2.6E-18 8.8E-23 182.1 19.4 205 697-916 30-238 (285)
62 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-18 3.6E-23 185.1 15.8 220 561-830 14-238 (285)
63 2p1m_B Transport inhibitor res 99.8 1.4E-20 4.9E-25 222.8 0.8 151 699-854 372-540 (594)
64 3zyj_A Leucine-rich repeat-con 99.8 5.7E-18 1.9E-22 191.4 21.1 222 697-937 62-290 (440)
65 3zyi_A Leucine-rich repeat-con 99.8 3.9E-18 1.4E-22 193.5 19.8 222 697-937 73-301 (452)
66 2z66_A Variable lymphocyte rec 99.8 1.6E-18 5.6E-23 185.8 15.5 223 698-937 27-259 (306)
67 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-21 8.5E-26 221.4 -7.2 132 699-831 284-441 (461)
68 3oja_A Leucine-rich immune mol 99.8 1.5E-18 5.1E-23 197.7 11.5 237 532-853 32-270 (487)
69 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-18 1.5E-22 182.9 14.0 212 699-937 34-248 (317)
70 2xwt_C Thyrotropin receptor; s 99.7 1.7E-17 5.8E-22 170.6 16.8 201 698-939 30-239 (239)
71 1wwl_A Monocyte differentiatio 99.7 4.6E-19 1.6E-23 190.2 4.7 195 699-912 95-305 (312)
72 1wwl_A Monocyte differentiatio 99.7 2E-18 7E-23 185.1 8.3 129 699-830 173-309 (312)
73 3oja_A Leucine-rich immune mol 99.7 1E-17 3.5E-22 190.8 14.4 213 699-938 34-249 (487)
74 2z62_A TOLL-like receptor 4, v 99.7 5.2E-17 1.8E-21 171.1 16.7 203 697-915 26-236 (276)
75 1p9a_G Platelet glycoprotein I 99.7 1.6E-16 5.4E-21 167.8 19.9 173 699-889 31-205 (290)
76 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.7E-21 164.5 17.4 208 568-828 20-237 (239)
77 1p9a_G Platelet glycoprotein I 99.7 4E-16 1.4E-20 164.7 18.6 196 699-915 10-207 (290)
78 4ay9_X Follicle-stimulating ho 99.7 6.4E-16 2.2E-20 168.5 19.7 237 562-854 13-255 (350)
79 4ay9_X Follicle-stimulating ho 99.7 9.2E-16 3.1E-20 167.3 19.2 222 697-935 28-255 (350)
80 2o6q_A Variable lymphocyte rec 99.7 9.3E-16 3.2E-20 160.6 18.4 177 699-914 37-216 (270)
81 2z62_A TOLL-like receptor 4, v 99.7 7.6E-16 2.6E-20 162.1 16.7 204 714-935 21-233 (276)
82 2o6q_A Variable lymphocyte rec 99.7 2.6E-15 8.9E-20 157.2 20.3 172 748-937 38-216 (270)
83 4glp_A Monocyte differentiatio 99.7 3E-16 1E-20 168.1 13.1 203 723-937 91-305 (310)
84 4glp_A Monocyte differentiatio 99.7 6.6E-16 2.2E-20 165.5 15.0 197 699-914 91-305 (310)
85 3rfs_A Internalin B, repeat mo 99.6 5.3E-16 1.8E-20 162.6 10.9 130 699-834 109-239 (272)
86 1h6u_A Internalin H; cell adhe 99.6 1.2E-15 4.3E-20 162.7 13.6 194 699-921 41-234 (308)
87 3rfs_A Internalin B, repeat mo 99.6 3.5E-15 1.2E-19 156.3 16.2 149 699-854 63-214 (272)
88 1h6u_A Internalin H; cell adhe 99.6 2.2E-15 7.5E-20 160.8 14.7 194 663-897 41-234 (308)
89 2ast_B S-phase kinase-associat 99.6 1.6E-16 5.4E-21 173.0 2.9 84 699-782 168-258 (336)
90 2ast_B S-phase kinase-associat 99.6 2.3E-16 7.9E-21 171.7 3.6 108 699-806 118-233 (336)
91 3m19_A Variable lymphocyte rec 99.6 5.5E-14 1.9E-18 145.3 17.3 175 700-914 15-190 (251)
92 3cvr_A Invasion plasmid antige 99.5 6.5E-14 2.2E-18 160.2 15.2 188 700-920 60-247 (571)
93 3m19_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 143.3 15.2 152 697-854 33-188 (251)
94 1h6t_A Internalin B; cell adhe 99.5 6.1E-14 2.1E-18 148.1 12.1 168 120-364 44-211 (291)
95 2ca6_A RAN GTPase-activating p 99.5 2.3E-15 7.8E-20 167.0 0.0 114 792-915 184-315 (386)
96 1h6t_A Internalin B; cell adhe 99.5 7.3E-14 2.5E-18 147.5 11.2 166 722-913 45-210 (291)
97 3goz_A Leucine-rich repeat-con 99.5 1.3E-15 4.5E-20 167.0 -3.1 156 699-854 80-262 (362)
98 4ezg_A Putative uncharacterize 99.5 2.3E-13 7.9E-18 134.6 12.3 146 699-854 44-190 (197)
99 2ca6_A RAN GTPase-activating p 99.5 2.8E-15 9.7E-20 166.3 -2.0 226 699-937 32-314 (386)
100 4ezg_A Putative uncharacterize 99.4 7.8E-13 2.7E-17 130.8 14.4 81 699-782 112-192 (197)
101 2o6s_A Variable lymphocyte rec 99.4 5.8E-13 2E-17 133.2 12.9 161 699-904 28-190 (208)
102 3goz_A Leucine-rich repeat-con 99.4 4.3E-15 1.5E-19 162.9 -3.0 229 696-937 19-295 (362)
103 3cvr_A Invasion plasmid antige 99.4 1.2E-12 4E-17 149.9 16.7 177 723-939 59-243 (571)
104 1xeu_A Internalin C; cellular 99.4 1.7E-13 5.9E-18 142.1 8.2 57 304-364 127-183 (263)
105 1m9s_A Internalin B; cell inva 99.4 5.1E-13 1.7E-17 154.9 11.2 142 699-854 43-184 (605)
106 3e6j_A Variable lymphocyte rec 99.4 6.8E-12 2.3E-16 127.2 18.3 127 772-914 41-170 (229)
107 1xeu_A Internalin C; cellular 99.4 2.2E-13 7.7E-18 141.3 6.6 140 700-854 20-159 (263)
108 1m9s_A Internalin B; cell inva 99.4 1.7E-12 6E-17 150.4 12.8 142 699-854 65-206 (605)
109 2o6s_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 126.9 13.5 90 699-795 100-189 (208)
110 2v9t_B SLIT homolog 2 protein 99.4 7.5E-12 2.6E-16 125.9 14.9 145 727-889 15-162 (220)
111 3e6j_A Variable lymphocyte rec 99.3 4.5E-12 1.5E-16 128.5 13.0 132 697-831 38-173 (229)
112 2je0_A Acidic leucine-rich nuc 99.3 1.6E-12 5.6E-17 122.0 8.4 123 92-223 17-147 (149)
113 2xot_A Amphoterin-induced prot 99.3 2.5E-12 8.5E-17 140.6 11.1 153 697-854 37-198 (361)
114 2v9t_B SLIT homolog 2 protein 99.3 6.1E-12 2.1E-16 126.5 13.1 133 697-830 30-165 (220)
115 2ell_A Acidic leucine-rich nuc 99.3 2.9E-12 9.8E-17 123.2 9.9 127 92-227 24-158 (168)
116 2xot_A Amphoterin-induced prot 99.3 6.3E-12 2.1E-16 137.4 12.4 125 702-830 21-149 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.3 1.9E-11 6.3E-16 123.0 14.6 110 699-808 57-166 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 6.2E-12 2.1E-16 126.5 10.7 129 92-228 32-165 (220)
119 1a9n_A U2A', U2A'; complex (nu 99.3 4.4E-12 1.5E-16 122.8 9.3 130 86-226 13-150 (176)
120 4b8c_D Glucose-repressible alc 99.3 4E-12 1.4E-16 151.5 10.7 152 67-225 173-325 (727)
121 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.7E-16 121.7 10.3 110 113-226 24-136 (193)
122 2ell_A Acidic leucine-rich nuc 99.3 1.1E-11 3.7E-16 119.1 10.1 138 64-211 21-165 (168)
123 2je0_A Acidic leucine-rich nuc 99.2 1.2E-11 4.1E-16 116.0 7.5 104 120-226 15-123 (149)
124 1w8a_A SLIT protein; signaling 99.2 4.6E-11 1.6E-15 117.3 10.0 110 113-226 22-136 (192)
125 2wfh_A SLIT homolog 2 protein 99.2 1.4E-10 4.6E-15 113.8 12.6 93 125-221 13-107 (193)
126 1dce_A Protein (RAB geranylger 99.2 5.3E-11 1.8E-15 137.1 10.9 102 123-228 442-545 (567)
127 3sb4_A Hypothetical leucine ri 99.2 1.1E-10 3.8E-15 125.8 12.5 98 816-931 225-326 (329)
128 4fdw_A Leucine rich hypothetic 99.2 2.4E-09 8.1E-14 117.7 23.0 228 700-956 158-396 (401)
129 4b8c_D Glucose-repressible alc 99.1 3.2E-11 1.1E-15 143.7 7.3 119 86-213 218-337 (727)
130 3sb4_A Hypothetical leucine ri 99.1 8E-10 2.7E-14 119.0 17.7 252 533-812 48-314 (329)
131 1a9n_A U2A', U2A'; complex (nu 99.1 5.8E-11 2E-15 114.8 7.9 106 117-226 14-123 (176)
132 1dce_A Protein (RAB geranylger 99.1 1.2E-10 4.2E-15 134.1 9.4 129 117-250 404-541 (567)
133 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6.3E-15 110.6 9.1 95 112-210 25-122 (174)
134 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6.3E-15 110.6 8.5 101 125-229 15-118 (174)
135 3g39_A Variable lymphocyte rec 99.1 2.5E-10 8.4E-15 109.4 8.8 95 125-223 12-109 (170)
136 2o6r_A Variable lymphocyte rec 99.1 4.4E-10 1.5E-14 108.8 10.5 100 122-223 28-131 (177)
137 1ds9_A Outer arm dynein; leuci 99.0 9.5E-12 3.3E-16 123.1 -2.6 108 113-224 39-148 (198)
138 1w8a_A SLIT protein; signaling 99.0 6.8E-10 2.3E-14 108.8 10.1 110 699-808 29-139 (192)
139 1ds9_A Outer arm dynein; leuci 99.0 1.3E-11 4.5E-16 122.1 -3.1 125 87-222 43-180 (198)
140 3g39_A Variable lymphocyte rec 99.0 6E-10 2.1E-14 106.7 8.5 94 112-209 22-118 (170)
141 4fdw_A Leucine rich hypothetic 98.9 3E-08 1E-12 108.9 20.7 189 699-912 180-379 (401)
142 2o6r_A Variable lymphocyte rec 98.9 3.9E-09 1.3E-13 102.1 11.5 107 699-808 28-137 (177)
143 2ifg_A High affinity nerve gro 98.7 1.7E-08 6E-13 109.6 8.7 88 114-203 24-114 (347)
144 4fs7_A Uncharacterized protein 98.7 6.7E-07 2.3E-11 98.7 20.2 206 699-934 162-374 (394)
145 4fs7_A Uncharacterized protein 98.6 6.2E-07 2.1E-11 99.0 18.5 60 839-911 314-374 (394)
146 2ifg_A High affinity nerve gro 98.6 5.2E-08 1.8E-12 105.8 8.5 101 126-229 12-116 (347)
147 3un9_A NLR family member X1; l 98.4 8.1E-09 2.8E-13 112.3 -3.5 155 699-854 72-248 (372)
148 4gt6_A Cell surface protein; l 98.3 1.5E-05 5E-10 87.9 19.4 97 535-638 65-168 (394)
149 2ra8_A Uncharacterized protein 98.3 4.4E-07 1.5E-11 97.5 5.9 168 716-914 132-318 (362)
150 4gt6_A Cell surface protein; l 98.2 0.00014 4.9E-09 79.9 22.7 195 717-937 154-368 (394)
151 2ra8_A Uncharacterized protein 98.2 1.3E-06 4.3E-11 94.0 5.8 60 717-779 166-227 (362)
152 3un9_A NLR family member X1; l 98.1 2.2E-07 7.5E-12 100.9 -0.8 83 120-203 70-166 (372)
153 4h09_A Hypothetical leucine ri 98.1 0.0002 7E-09 78.3 22.6 75 534-616 46-122 (379)
154 4h09_A Hypothetical leucine ri 98.1 0.00049 1.7E-08 75.2 24.9 87 719-811 213-302 (379)
155 3e4g_A ATP synthase subunit S, 98.0 2.5E-06 8.6E-11 79.8 4.1 88 699-786 61-154 (176)
156 3e4g_A ATP synthase subunit S, 97.9 3.1E-06 1.1E-10 79.1 2.1 86 535-621 62-153 (176)
157 3rw6_A Nuclear RNA export fact 97.9 1.5E-05 5.1E-10 80.8 6.4 103 120-224 139-259 (267)
158 3rw6_A Nuclear RNA export fact 97.8 7.8E-06 2.7E-10 82.9 2.7 79 120-199 168-258 (267)
159 2a5y_B CED-4; apoptosis; HET: 97.6 1.3E-05 4.4E-10 92.2 2.0 49 2-51 424-473 (549)
160 1io0_A Tropomodulin; LRR prote 97.6 2.6E-05 9E-10 75.2 3.5 83 120-203 63-162 (185)
161 1io0_A Tropomodulin; LRR prote 97.6 3.4E-05 1.1E-09 74.4 3.9 102 120-223 34-158 (185)
162 3rfe_A Platelet glycoprotein I 95.9 0.01 3.5E-07 52.7 5.8 52 125-178 11-65 (130)
163 3rfe_A Platelet glycoprotein I 94.4 0.037 1.3E-06 49.0 4.8 53 148-203 11-66 (130)
164 3sfz_A APAF-1, apoptotic pepti 92.2 0.088 3E-06 67.4 5.0 44 6-49 408-452 (1249)
165 1pgv_A TMD-1, tropomodulin TMD 91.8 0.17 5.7E-06 48.2 5.0 82 120-202 39-136 (197)
166 1pgv_A TMD-1, tropomodulin TMD 90.1 0.24 8.2E-06 47.0 4.3 110 89-203 38-168 (197)
167 1z6t_A APAF-1, apoptotic prote 85.2 0.58 2E-05 54.0 4.6 41 7-47 409-450 (591)
168 1vt4_I APAF-1 related killer D 84.9 0.41 1.4E-05 57.2 3.0 37 6-43 401-437 (1221)
169 2lz0_A Uncharacterized protein 22.3 88 0.003 25.5 4.2 37 874-912 15-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.3e-53 Score=511.88 Aligned_cols=247 Identities=13% Similarity=0.054 Sum_probs=148.9
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|++.+.+|..++.+++|++|++++|...+.+|..+..+++|++|++++|+..+.+|..+..+..+..+++
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 44555555555555555555555555555555555444455555555555555555555444445544433333332222
Q ss_pred cCCcCc----------------------ccCCCcCCCCCccceEEEeCCCCCCcc--cCCCCCccceeeecCCCCccchh
Q 048829 779 YDCKRL----------------------EALPKGLHNLTSLQQLTIIGGELPSLE--EDGLPTNLHSLRIEGNMGIWKSM 834 (976)
Q Consensus 779 ~~c~~l----------------------~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~ 834 (976)
..+... +..+..+..++.++.+++..+.+.... ..+.+++|+.|++++|.+...++
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 211000 001111122222222222222222111 12345789999999999988877
Q ss_pred hhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829 835 IERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 835 ~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 914 (976)
..+.++++|+.|++++ |...+.+|... ..+++|+.|++++|+.-+.+|..+..+++|++|++++|+
T Consensus 650 ----~~l~~l~~L~~L~Ls~-N~l~g~ip~~l---------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 650 ----KEIGSMPYLFILNLGH-NDISGSIPDEV---------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ----GGGGGCTTCCEEECCS-SCCCSCCCGGG---------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ----HHHhccccCCEEeCcC-CccCCCCChHH---------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 5689999999999999 56777899887 589999999999966667999999999999999999988
Q ss_pred CccccCCCCCcccccceeecCCcc-----hHHHHhccCCccccccccccEE
Q 048829 915 KLKYFPEKGLPSSLLQLRIYRCPL-----IEEKCRKDGGQYWDLLTHIPYA 960 (976)
Q Consensus 915 ~l~~i~~~~~~~~L~~L~i~~c~~-----l~~~~~~~~~~~~~~i~~~~~~ 960 (976)
..+.||..+...++....+.|||. +. .|...++++|++|+|+|.+
T Consensus 716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp EEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-------------
T ss_pred ccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCCCCCCcccc
Confidence 888999887777888888888763 34 7999999999999999985
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-48 Score=474.78 Aligned_cols=629 Identities=15% Similarity=0.069 Sum_probs=372.0
Q ss_pred cccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCcc-ccch--hhhccCCccEEecccccchhccchhh-h
Q 048829 114 ILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIR-TLPE--SVNKLYNLHSLLLEDCDRLKKLCADM-G 189 (976)
Q Consensus 114 ~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~-~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i-~ 189 (976)
+++.+.++++|++++++.+.+..+|..|+++++|++|+|++|.+. .+|. .++++++|++|++++|.....+|..+ +
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 566666888888888888887777788888888888888888876 4666 78888888888888865445556554 7
Q ss_pred ccccCceeecCCCCCcccc-ccc---cCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhc
Q 048829 190 NLIKLHHLNNSNTDSLEET-PLG---IGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEAR 265 (976)
Q Consensus 190 ~L~~L~~L~l~~~~~~~~l-p~~---i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 265 (976)
++++|++|++++|. +... |.. ++++++|++|++...... .
T Consensus 149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---------------------~-------------- 192 (768)
T 3rgz_A 149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKIS---------------------G-------------- 192 (768)
T ss_dssp CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEE---------------------S--------------
T ss_pred cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCccc---------------------c--------------
Confidence 88888888888887 4433 333 566777776643211100 0
Q ss_pred cCCCCCCceEEEEEccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCC
Q 048829 266 LDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTA 345 (976)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 345 (976)
...+..+++|+.|+++++.....+..+.. +++|++|++++|...+.
T Consensus 193 --------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~--l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 193 --------------------------------DVDVSRCVNLEFLDVSSNNFSTGIPFLGD--CSALQHLDISGNKLSGD 238 (768)
T ss_dssp --------------------------------CCBCTTCTTCCEEECCSSCCCSCCCBCTT--CCSCCEEECCSSCCCSC
T ss_pred --------------------------------cCCcccCCcCCEEECcCCcCCCCCccccc--CCCCCEEECcCCcCCCc
Confidence 00112344455555555544332222333 55666666666655444
Q ss_pred CC-CCCCCCCCceEEEeCCCCceeeCccccCCCCCCCCCCcceeecccccccccccccCCCCCccC-CcccceeecccCc
Q 048829 346 LP-SVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEG-FPKLRELHILECP 423 (976)
Q Consensus 346 l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~L~~L~l~~c~ 423 (976)
+| .++.+++|++|++++|.....+.. ..+++|++|++.++.-. +..+..+.. +++|++|++++|
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~--------~~l~~L~~L~L~~n~l~-----~~ip~~~~~~~~~L~~L~Ls~n- 304 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPP--------LPLKSLQYLSLAENKFT-----GEIPDFLSGACDTLTGLDLSGN- 304 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCC--------CCCTTCCEEECCSSEEE-----ESCCCCSCTTCTTCSEEECCSS-
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCc--------cccCCCCEEECcCCccC-----CccCHHHHhhcCcCCEEECcCC-
Confidence 44 455566666666665543222211 12556666666655411 111111222 367777777777
Q ss_pred ccccCCCC---CCCCcceEEEeccccc---cc-cCCCCCcccEEEEccccceeeecccCCCCCCceEEeccCCCCCcccc
Q 048829 424 KLRGTFPE---HLPVLEMLVIEGCEEL---LV-SVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGL 496 (976)
Q Consensus 424 ~L~~~lp~---~l~~L~~L~l~~~~~l---~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 496 (976)
.+++.+|. .+++|++|++++|... .. .+..+++|++|++++|..... ....
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~----------------------~p~~ 362 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE----------------------LPES 362 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC----------------------CCTT
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc----------------------ccHH
Confidence 55545553 3445555555554322 11 134455555555555432210 1112
Q ss_pred cccCC-CCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCC
Q 048829 497 LQDIC-SLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFP 575 (976)
Q Consensus 497 ~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 575 (976)
+..++ +|+.|++++|.--..++... .. ..+++|+.|++++|...+.+|..+..+++|++|++++|..-..+|
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~-----~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNL-----CQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTT-----TC--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhh-----hh--cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 23333 66666666653222111110 00 002456666666666655666666666666666666642222333
Q ss_pred C-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccc
Q 048829 576 E-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQ 653 (976)
Q Consensus 576 ~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~ 653 (976)
. ...+++|++|++++|...+.+|..+. .+++|++|++++|.....+|.. ..+++|+.|++++|...+.+ |.++.
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~ 511 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI--PKWIG 511 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGG
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC--ChHHh
Confidence 2 33356666666666664434444433 5566666666665544444433 34455666666655433333 32222
Q ss_pred cccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecC
Q 048829 654 SSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNC 733 (976)
Q Consensus 654 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c 733 (976)
. + ++|++|++++|++.+.+|..+..+++|++|++++|
T Consensus 512 ~------------------------------------------l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 512 R------------------------------------------L-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp G------------------------------------------C-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred c------------------------------------------C-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 1 1 78999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCcEEEccCCCCCC----------------------ccCCCCCCCCCccEEEecCCcCcccCCCcC
Q 048829 734 ENLKILSSGLHNLCQLQQIGIGGCGNLE----------------------SFPEGGLPCAKLRRLEIYDCKRLEALPKGL 791 (976)
Q Consensus 734 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~----------------------~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l 791 (976)
...+.+|..+.....+..+.+..+.... ..+.....++.++.+++..+...+.+|..+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 8888999888776666555444321110 011111223344555555566556677777
Q ss_pred CCCCccceEEEeCCCCCC-ccc-CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCccc
Q 048829 792 HNLTSLQQLTIIGGELPS-LEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDR 869 (976)
Q Consensus 792 ~~l~~L~~L~l~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~ 869 (976)
..+++|+.|++++|.+.. +|. .+.+++|+.|++++|.+...++ ..+.++++|+.|++++ |...+.+|...
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip----~~l~~L~~L~~LdLs~-N~l~g~ip~~l--- 700 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP----DEVGDLRGLNILDLSS-NKLDGRIPQAM--- 700 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC----GGGGGCTTCCEEECCS-SCCEECCCGGG---
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC----hHHhCCCCCCEEECCC-CcccCcCChHH---
Confidence 777888888888777763 332 2446778888888888777666 4578888888888888 56666777766
Q ss_pred ccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCcc
Q 048829 870 RLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLK 917 (976)
Q Consensus 870 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 917 (976)
..+++|+.|++++|+..+.||. ...+..+....+.+|+.+-
T Consensus 701 ------~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 701 ------SALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp ------GGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEE
T ss_pred ------hCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhc
Confidence 4788888888888666677774 3445566666677776554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-41 Score=406.04 Aligned_cols=375 Identities=16% Similarity=0.124 Sum_probs=231.7
Q ss_pred CCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--c
Q 048829 500 ICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--V 577 (976)
Q Consensus 500 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~ 577 (976)
.++|+.|+++++. +....... +..+ ..++|+.|++++|......+..+..+++|++|++++| .++.++. .
T Consensus 221 ~~~L~~L~L~~n~-l~~~~~~~----~~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 292 (680)
T 1ziw_A 221 NTSIRNLSLSNSQ-LSTTSNTT----FLGL--KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSL 292 (680)
T ss_dssp TSCCCEEECTTSC-CCEECTTT----TGGG--GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTT
T ss_pred hccccEEEccCCc-ccccChhH----hhcc--CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-ccCccChhhh
Confidence 3567777777753 22222211 1111 0034777777777666555666677777777777773 4444332 3
Q ss_pred CCCCCCcEEEEccCCCCC-----CCC---CccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEeeccCcC-ccccc
Q 048829 578 ALPSKLKKIEIRECDALK-----SLP---EPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNK-IRTLT 647 (976)
Q Consensus 578 ~~~~~L~~L~l~~~~~l~-----~l~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~-l~~~~ 647 (976)
..+++|++|++++|..-. .+| ...+ ..+++|++|++++|......+.. ..+++|++|++++|.. +..+
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l- 370 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL- 370 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTT-TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE-
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhc-ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc-
Confidence 346677777776654211 111 1111 35566666666665332222211 3344566666655531 1111
Q ss_pred cccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCce
Q 048829 648 VEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLET 727 (976)
Q Consensus 648 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 727 (976)
+...+... -.++|+.|++++|.+.+..|..+..+++|++
T Consensus 371 ---------------------------------~~~~f~~~--------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 371 ---------------------------------TNETFVSL--------AHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp ---------------------------------CTTTTGGG--------TTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ---------------------------------chhhhccc--------ccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 11111000 0146788888888877777777888888888
Q ss_pred EEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCc--ccCCCcCCCCCccceEEEeC
Q 048829 728 INISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRL--EALPKGLHNLTSLQQLTIIG 804 (976)
Q Consensus 728 L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~l~~l~~L~~L~l~~ 804 (976)
|++++|...+.+| ..+.++++|++|++++|......+..+..+++|++|++++|... +.+|..+..+++|++|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 8888876655554 56777888888888888544444455666788888888887643 45677778888888888888
Q ss_pred CCCCCcccC--CCCCccceeeecCCCCccchhhh----cCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCc
Q 048829 805 GELPSLEED--GLPTNLHSLRIEGNMGIWKSMIE----RGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLP 878 (976)
Q Consensus 805 ~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l 878 (976)
|.+..++.. ..+++|++|++++|.+....... ....+.++++|++|++++ +.+..+|.+. |..+
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~--------~~~l 559 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEV--------FKDL 559 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTT--------TTTC
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHH--------cccc
Confidence 888877654 34677888888888776542211 002367788888888887 3555676653 3678
Q ss_pred cccceeeccccCCCcccccc-ccCCCCCCeEeecCCCCccccCCCCC---cccccceeecCCc
Q 048829 879 ASLTSLSIAFFPNLESLSSS-IVDLQNLTKLTLYDCPKLKYFPEKGL---PSSLLQLRIYRCP 937 (976)
Q Consensus 879 ~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~i~~~~~---~~~L~~L~i~~c~ 937 (976)
++|+.|++++ +.++.+|.. +..+++|+.|++++| +++.+++..+ .++|++|++++||
T Consensus 560 ~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 560 FELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred cCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 8888888887 677788764 567888888888884 6777766433 3678888888765
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-41 Score=408.04 Aligned_cols=564 Identities=17% Similarity=0.145 Sum_probs=344.7
Q ss_pred CcccEEEccCCcccccc-ccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-hhccccCceee
Q 048829 122 QRLRVFSLRGYHISELP-DSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLN 198 (976)
Q Consensus 122 ~~Lr~L~Ls~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 198 (976)
+++++|+|++|.++.+| ..|+++++|++|+|++|.+..+ |..|+++++|++|++++ +.+..+|.. |+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC-CccCccChhhhccCCCCCEEE
Confidence 56777777777777764 4577777777777777777766 56677777777777777 366677653 77777777777
Q ss_pred cCCCCCcccccc-ccCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhccCCCCCCceEEE
Q 048829 199 NSNTDSLEETPL-GIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLL 277 (976)
Q Consensus 199 l~~~~~~~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 277 (976)
+++|. +..+|. .|+++++|++|++...... .
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------~----------------------- 135 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS------------------------S----------------------- 135 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSSCCS------------------------C-----------------------
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCCccc------------------------c-----------------------
Confidence 77776 666653 3667777666643211100 0
Q ss_pred EEccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCc-cCCCCCCCccEEEEecCCCCCCCC-CCCCCCCC
Q 048829 278 RWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTW-LGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSL 355 (976)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 355 (976)
.....+..+++|+.|+++++....++.. +.....++|++|++++|...+..+ .++.+++|
T Consensus 136 ------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 136 ------------------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp ------------------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred ------------------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 0011223344455555555544433321 111114566666666665544433 34555666
Q ss_pred ceEEEeCCCCceeeCccccCCCCCCCCCCcceeecccccccccccccCCCCCccCCcccceeecccCcccccCCCCCCCC
Q 048829 356 KHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPV 435 (976)
Q Consensus 356 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~ 435 (976)
+.|++.++....... ..... ....++|+.|++++| .+.+..|..+..
T Consensus 198 ~~L~l~~~~l~~~~~--------------------------~~~~~------~l~~~~L~~L~L~~n-~l~~~~~~~~~~ 244 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLT--------------------------EKLCL------ELANTSIRNLSLSNS-QLSTTSNTTFLG 244 (680)
T ss_dssp CEEECTTCCCHHHHH--------------------------HHHHH------HHTTSCCCEEECTTS-CCCEECTTTTGG
T ss_pred hhhhccccccChhhH--------------------------HHHHH------HhhhccccEEEccCC-cccccChhHhhc
Confidence 666655432110000 00000 012356777777776 454333332211
Q ss_pred cceEEEeccccccccCCCCCcccEEEEccccceeeecccCCCCCCceEEeccCCCCCcccccccCCCCCeEEEcCCCCcc
Q 048829 436 LEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQ 515 (976)
Q Consensus 436 L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 515 (976)
++ .++|++|+++++...... ...+..+
T Consensus 245 l~----------------~~~L~~L~Ls~n~l~~~~----------------------~~~~~~l--------------- 271 (680)
T 1ziw_A 245 LK----------------WTNLTMLDLSYNNLNVVG----------------------NDSFAWL--------------- 271 (680)
T ss_dssp GG----------------GSCCCEEECTTSCCCEEC----------------------TTTTTTC---------------
T ss_pred cC----------------cCCCCEEECCCCCcCccC----------------------cccccCc---------------
Confidence 00 011222222222111100 0011122
Q ss_pred cchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCC-----CCC-----CcCCCCCCcE
Q 048829 516 SLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLV-----SFP-----EVALPSKLKK 585 (976)
Q Consensus 516 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~-----~~~~~~~L~~ 585 (976)
++|+.|++++|......|..+..+++|+.|+++++..-. .+| ....+++|++
T Consensus 272 ------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 272 ------------------PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp ------------------TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ------------------ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 455555555555555555566666777777776532111 222 1334677888
Q ss_pred EEEccCCCCCCCCCccccCCCCcccEEEEecCCC-Cccccccc----CCCCCcEEeeccCcCcccccccccccccccccc
Q 048829 586 IEIRECDALKSLPEPWMCDTSSSLEILKIWDCHS-LTYIAEVQ----LPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRY 660 (976)
Q Consensus 586 L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 660 (976)
|++++|. +..++...+ ..+++|++|++++|.. +..++... ..++|+.|++++|...+.. +..+..+
T Consensus 334 L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l----- 404 (680)
T 1ziw_A 334 LNMEDND-IPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SDAFSWL----- 404 (680)
T ss_dssp EECCSCC-BCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC--TTTTTTC-----
T ss_pred EECCCCc-cCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC--hhhhhCC-----
Confidence 8888777 555555444 5778888888887642 23333221 1246778888777532221 2111111
Q ss_pred CCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh-hhhcCCCCCceEEeecCCCcccc
Q 048829 661 TSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA-ERLDNNTSLETINISNCENLKIL 739 (976)
Q Consensus 661 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l 739 (976)
++|++|++++|.+.+.++ ..+.++++|++|++++|......
T Consensus 405 --------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 405 --------------------------------------GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp --------------------------------------TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred --------------------------------------CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 678888888888877665 67888889999999987655555
Q ss_pred cccccCCCCCcEEEccCCCCC--CccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC----
Q 048829 740 SSGLHNLCQLQQIGIGGCGNL--ESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED---- 813 (976)
Q Consensus 740 p~~~~~l~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~---- 813 (976)
+..+..+++|++|++++|... +.+|..+..+++|++|++++|......+..+..+++|++|++++|.+..++..
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence 777888899999999888542 56677778888999999999885544445678889999999999888876432
Q ss_pred ------CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeecc
Q 048829 814 ------GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIA 887 (976)
Q Consensus 814 ------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 887 (976)
..+++|++|++++|.+..... ..+.++++|+.|++++ +.+..+|... |..+++|+.|+++
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~--N~l~~l~~~~--------~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPV----EVFKDLFELKIIDLGL--NNLNTLPASV--------FNNQVSLKSLNLQ 592 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCCCCTTT--------TTTCTTCCEEECT
T ss_pred CcchhhcCCCCCCEEECCCCCCCCCCH----HHcccccCcceeECCC--CCCCcCCHhH--------hCCCCCCCEEECC
Confidence 345789999999998774433 4688999999999988 4666777664 4688999999999
Q ss_pred ccCCCccccc-ccc-CCCCCCeEeecCCCCccc
Q 048829 888 FFPNLESLSS-SIV-DLQNLTKLTLYDCPKLKY 918 (976)
Q Consensus 888 ~~~~l~~l~~-~l~-~l~~L~~L~l~~c~~l~~ 918 (976)
+ +.++.++. .+. .+++|+.|++++|+..-.
T Consensus 593 ~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 593 K-NLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp T-SCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred C-CcCCccChhHhcccccccCEEEccCCCcccC
Confidence 9 57888776 454 688999999999775544
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-38 Score=378.29 Aligned_cols=203 Identities=18% Similarity=0.135 Sum_probs=114.2
Q ss_pred cccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 535 RLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 535 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
+|+.|++++|......+..+..+++|++|++++ +.++.+|. ...+++|++|++++|. +..++...+ ..+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANK-FENLCQISA-SNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT-SCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCG-GGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccC-CccCCCChhhcccccCCEEECccCC-cCcCchhhh-hccCcCCEEE
Confidence 677778877766655555677778888888877 45666664 3446677777777776 444332222 3556666666
Q ss_pred EecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccc
Q 048829 614 IWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES 691 (976)
Q Consensus 614 l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 691 (976)
+++|.....++.. ..+
T Consensus 332 l~~n~~~~~~~~~~~~~l-------------------------------------------------------------- 349 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENL-------------------------------------------------------------- 349 (606)
T ss_dssp CCSCSSCCBCCSSTTTTC--------------------------------------------------------------
T ss_pred CCCCCcccccchhhhhcc--------------------------------------------------------------
Confidence 6655433233221 222
Q ss_pred ccccCCCCCceEEEEcCCCcchhh--hhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CC
Q 048829 692 LEVGNLPPSVKVLDVYGCPKLESI--AERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GL 768 (976)
Q Consensus 692 ~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~ 768 (976)
++|++|++++|.+.+.. +..+..+++|++|++++|......|..+..+++|++|++++|......+.. +.
T Consensus 350 -------~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 350 -------ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp -------TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred -------CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 34455555555444433 444555566666666665444444555555666666666666433333322 44
Q ss_pred CCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCC
Q 048829 769 PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPS 809 (976)
Q Consensus 769 ~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~ 809 (976)
.+++|++|++++|......|..+..+++|++|++++|.+..
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 55666666666666444455555666666666666665543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.8e-38 Score=374.44 Aligned_cols=288 Identities=19% Similarity=0.160 Sum_probs=144.9
Q ss_pred cccEEEeeccCCc-ccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 535 RLEYLRLRYCEGL-VKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 535 ~L~~L~L~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
.++.+++..++.. ..+|. +..+++|+.|++++ +.++.+|....+++|++|++++|. ++.+|.. .+++|++|+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~-~~~~~l~~l~~~~~L~~L~l~~n~-l~~lp~~----~l~~L~~L~ 334 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG-VSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTL----DLPFLKSLT 334 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEES-CCCCCCCCCCTTCCCSEEEEESCC-CSSCCCC----CCSSCCEEE
T ss_pred cHhheeccccccccccccc-cccCCCCCEEEecC-ccchhhhhccccccCCEEEccccc-CcccccC----CCCccceee
Confidence 5666666333333 33443 77788888888888 456777755557778888888877 4666632 567777777
Q ss_pred EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829 614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE 693 (976)
Q Consensus 614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 693 (976)
+++|..+..++ ...+++|+.|++++|
T Consensus 335 l~~n~~~~~~~-~~~l~~L~~L~ls~n----------------------------------------------------- 360 (606)
T 3vq2_A 335 LTMNKGSISFK-KVALPSLSYLDLSRN----------------------------------------------------- 360 (606)
T ss_dssp EESCSSCEECC-CCCCTTCCEEECCSS-----------------------------------------------------
T ss_pred ccCCcCccchh-hccCCCCCEEECcCC-----------------------------------------------------
Confidence 77765443331 123334455555444
Q ss_pred ccCCCCCceEEEEcCCCcchh--hhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccC-CCCCCC
Q 048829 694 VGNLPPSVKVLDVYGCPKLES--IAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP-EGGLPC 770 (976)
Q Consensus 694 ~~~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~ 770 (976)
.+.+. ++..+..+++|++|++++|. +..+|..+.++++|++|++++|...+..| ..+..+
T Consensus 361 ----------------~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 361 ----------------ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp ----------------CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred ----------------ccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 33222 13334444444444444432 33334444444444444444443222222 233344
Q ss_pred CCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCC--ccc-CCCCCccceeeecCCCCccchhhhcCCcccccCcc
Q 048829 771 AKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPS--LEE-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSL 847 (976)
Q Consensus 771 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 847 (976)
++|++|++++|...+..|..+..+++|++|++++|.+.. ++. .+.+++|++|++++|.+....+ ..+.++++|
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L 499 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW----GVFDTLHRL 499 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTC
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh----hhhcccccC
Confidence 444444444444434444444444444444444444443 111 1223444444444444443332 335555666
Q ss_pred cEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCC-CCCeEeecCCCC
Q 048829 848 RYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQ-NLTKLTLYDCPK 915 (976)
Q Consensus 848 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~-~L~~L~l~~c~~ 915 (976)
++|++++ |...+..|..+ ..+++|+.|++++ +.++.+|..+..++ +|++|++++|+.
T Consensus 500 ~~L~Ls~-N~l~~~~~~~~---------~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 500 QLLNMSH-NNLLFLDSSHY---------NQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CEEECCS-SCCSCEEGGGT---------TTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CEEECCC-CcCCCcCHHHc---------cCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCCc
Confidence 6666665 22222223332 3556666666666 34556666555555 366666666543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.5e-38 Score=374.71 Aligned_cols=510 Identities=16% Similarity=0.095 Sum_probs=285.9
Q ss_pred CCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccC
Q 048829 92 QHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLY 168 (976)
Q Consensus 92 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~ 168 (976)
+++|+|.+.++. ...+++..+ ++++||+|+|++|.++.+ |.+|+++++||+|+|++|.+..+ |.+|++++
T Consensus 32 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNP-------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCC-------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 677888766553 234555444 888888888888888877 66788888888888888888877 77788888
Q ss_pred CccEEecccccchhccc-hhhhccccCceeecCCCCCcc--ccccccCCCCCCceecceEecCCC--CCCchhhhccccc
Q 048829 169 NLHSLLLEDCDRLKKLC-ADMGNLIKLHHLNNSNTDSLE--ETPLGIGKLTCLQTLCNFVVGKDS--GSGLSELKLLMHL 243 (976)
Q Consensus 169 ~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~--~lp~~i~~L~~L~~L~~~~~~~~~--~~~~~~L~~L~~L 243 (976)
+|++|++++| .+..+| ..|+++++|++|++++|. +. .+|..++++++|++|++....... ...+..+++
T Consensus 105 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---- 178 (606)
T 3vq2_A 105 SLENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE---- 178 (606)
T ss_dssp TCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH----
T ss_pred cCCEEEccCC-ccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc----
Confidence 8888888884 566665 558888888888888887 55 467778888888877543221110 000111111
Q ss_pred cCceEEeecCCCCChhhhhhhccCCCCCCceEEEEEccCCCCCCChhhhhHhhhccCCCCCC-CCceeEeeccCCCCCCC
Q 048829 244 RGALEISKLENVKDVGNAKEARLDGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHK-NLEQFGICGYGGTKFPT 322 (976)
Q Consensus 244 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~~~p~ 322 (976)
++ .+..|+++++....+|.
T Consensus 179 ------------------------------------------------------------L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 179 ------------------------------------------------------------NPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp ------------------------------------------------------------CTTCCCEEECTTCCCCEECT
T ss_pred ------------------------------------------------------------cccccceeeccCCCcceeCc
Confidence 11 13356666666666655
Q ss_pred ccCCCCCCCccEEEEecCCCCC-CCC-CCCCCCCCceEEEeCCCCceeeCccccCCCCCCCCCCcceeeccccccccccc
Q 048829 323 WLGDSLFSNLVTLEFEDCGMCT-ALP-SVGQLPSLKHLTVRGVSRVKRLGSEFYGDDSPIPFPCLETLRFEDLQEWEVWI 400 (976)
Q Consensus 323 ~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 400 (976)
.... ..+|+.|++++|.... ..| .++.+++|+.+++.....- . ...+..+.-. .
T Consensus 199 ~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~-------------~~~l~~~~~~--------~ 254 (606)
T 3vq2_A 199 QAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK-D-------------ERNLEIFEPS--------I 254 (606)
T ss_dssp TTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT-T-------------SCCCSCCCGG--------G
T ss_pred cccc--CceeeeeeccCCccchhHHHHHhccccccccccccccccc-c-------------CCcccccChH--------H
Confidence 5544 3478888888887542 222 4566777777777532100 0 0011100000 0
Q ss_pred ccCCCCCccCCcccceeecccCcccccCCCCCCCCcceEEEeccccccccCCCCCcccEEEEccccceeeecccCCCCCC
Q 048829 401 SHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLEMLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQ 480 (976)
Q Consensus 401 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 480 (976)
... ...+ .++.+++..+..+.+.+|. +..+++|+.+++.++......
T Consensus 255 ~~~----l~~l-~l~~l~l~~~~~~~~~~~~-------------------~~~l~~L~~L~l~~~~~~~l~--------- 301 (606)
T 3vq2_A 255 MEG----LCDV-TIDEFRLTYTNDFSDDIVK-------------------FHCLANVSAMSLAGVSIKYLE--------- 301 (606)
T ss_dssp GTT----GGGS-EEEEEEECCCTTCCGGGGS-------------------CGGGTTCSEEEEESCCCCCCC---------
T ss_pred hhh----hhhc-cHhheeccccccccccccc-------------------cccCCCCCEEEecCccchhhh---------
Confidence 000 1112 4566666454455433331 111112222222221100000
Q ss_pred ceEEeccCCCCCcccccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCc
Q 048829 481 NSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSL 560 (976)
Q Consensus 481 ~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L 560 (976)
.+..+ ++|+.|++++|.. +.+| .+ .+++|
T Consensus 302 ---------------~l~~~---------------------------------~~L~~L~l~~n~l-~~lp-~~-~l~~L 330 (606)
T 3vq2_A 302 ---------------DVPKH---------------------------------FKWQSLSIIRCQL-KQFP-TL-DLPFL 330 (606)
T ss_dssp ---------------CCCTT---------------------------------CCCSEEEEESCCC-SSCC-CC-CCSSC
T ss_pred ---------------hcccc---------------------------------ccCCEEEcccccC-cccc-cC-CCCcc
Confidence 00111 3444445554444 4444 23 55555
Q ss_pred cEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCC---CCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEe
Q 048829 561 KEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSL---PEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLD 636 (976)
Q Consensus 561 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~ 636 (976)
++|++++|..+..+ ....+++|++|++++|. +..+ +..+ ..+++|++|++++|. +..++.. ..+++|+.|+
T Consensus 331 ~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 331 KSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSD--LGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHH--HCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEE
T ss_pred ceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhh--ccCCcccEeECCCCc-cccchhhccCCCCCCeeE
Confidence 55555554333333 22334555555555554 2222 2221 244555555555543 2222211 2334455555
Q ss_pred eccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh
Q 048829 637 IQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA 716 (976)
Q Consensus 637 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 716 (976)
+++|...+.. + ...+ ..+ ++|++|++++|.+.+..|
T Consensus 406 l~~n~l~~~~--~--------------------------------~~~~---------~~l-~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 406 FQHSTLKRVT--E--------------------------------FSAF---------LSL-EKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp CTTSEEESTT--T--------------------------------TTTT---------TTC-TTCCEEECTTSCCEECCT
T ss_pred CCCCccCCcc--C--------------------------------hhhh---------hcc-ccCCEEECcCCCCCccch
Confidence 5544321111 0 0000 111 677778888877777777
Q ss_pred hhhcCCCCCceEEeecCCCccc-ccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCC
Q 048829 717 ERLDNNTSLETINISNCENLKI-LSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLT 795 (976)
Q Consensus 717 ~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~ 795 (976)
..+..+++|++|++++|...+. +|..+..+++|++|++++|...+..|..+..+++|++|++++|...+..|..+..++
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 7777888888888887655542 577777788888888888855555555667777888888888876666677777788
Q ss_pred ccceEEEeCCCCCCcccC--CCCCccceeeecCCCCcc
Q 048829 796 SLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIW 831 (976)
Q Consensus 796 ~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~ 831 (976)
+|++|++++|.++.+|.. ..+++|++|++++|+...
T Consensus 522 ~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 888888888777777653 223357777777776654
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.8e-38 Score=372.81 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=77.5
Q ss_pred cccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhc-cchhhhccccCceeec
Q 048829 123 RLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKK-LCADMGNLIKLHHLNN 199 (976)
Q Consensus 123 ~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~L~l 199 (976)
.+++|+|++|.++.+ |.+|+++++|++|+|++|.+..+ |.+|+++++|++|++++| .+.. .|..|+++++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeec
Confidence 578888888888877 67888888888888888888876 677888888888888885 4444 4667888888888888
Q ss_pred CCCCCcccc-ccccCCCCCCceec
Q 048829 200 SNTDSLEET-PLGIGKLTCLQTLC 222 (976)
Q Consensus 200 ~~~~~~~~l-p~~i~~L~~L~~L~ 222 (976)
++|. +..+ |..++++++|++|+
T Consensus 113 ~~n~-i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 113 IQTG-ISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTSC-CSCGGGSCCTTCTTCCEEE
T ss_pred cccC-cccCCcchhccCCcccEEE
Confidence 8887 6666 34477777777664
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=354.51 Aligned_cols=258 Identities=18% Similarity=0.104 Sum_probs=154.3
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI 611 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 611 (976)
++|+.|++++|......+..+..+++|++|++++ +.++.++. ...+++|++|++++|. +..++...+ ..+++|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~~L~~ 366 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF-KFLEKLQT 366 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES-CCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS-CSCCCCCE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC-CCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh-cCCCCCCE
Confidence 3444444444444444444555555666666655 34443322 2335556666666654 444444433 45666666
Q ss_pred EEEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccc
Q 048829 612 LKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES 691 (976)
Q Consensus 612 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 691 (976)
|++++|. ++.++ .+++|+.|++++|.. +.+ |.
T Consensus 367 L~Ls~N~-l~~i~---~~~~L~~L~l~~N~l-~~l--~~----------------------------------------- 398 (844)
T 3j0a_A 367 LDLRDNA-LTTIH---FIPSIPDIFLSGNKL-VTL--PK----------------------------------------- 398 (844)
T ss_dssp EEEETCC-SCCCS---SCCSCSEEEEESCCC-CCC--CC-----------------------------------------
T ss_pred EECCCCC-CCccc---CCCCcchhccCCCCc-ccc--cc-----------------------------------------
Confidence 6666653 22222 134456666655532 111 10
Q ss_pred ccccCCCCCceEEEEcCCCcchh-hhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCC-----CccC
Q 048829 692 LEVGNLPPSVKVLDVYGCPKLES-IAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNL-----ESFP 764 (976)
Q Consensus 692 ~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l-----~~~~ 764 (976)
...+++.|++++|.+.+. .+..+..+++|++|++++|......+ ..+..+++|++|++++|... ...+
T Consensus 399 -----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 473 (844)
T 3j0a_A 399 -----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473 (844)
T ss_dssp -----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred -----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch
Confidence 014566777777665542 23345677788888888865433221 23445788888888888433 1222
Q ss_pred CCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCccccc
Q 048829 765 EGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRF 844 (976)
Q Consensus 765 ~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 844 (976)
..+..+++|++|++++|...+..|..+..+++|++|++++|.++.++...+.++|+.|++++|.+....+ . .+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~----~---~~ 546 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNP----D---VF 546 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCS----C---CC
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCCh----h---Hh
Confidence 3455678888888888875555555678888888888888888888877777888888888888877655 2 34
Q ss_pred CcccEEEEec
Q 048829 845 SSLRYLLIRG 854 (976)
Q Consensus 845 ~~L~~L~l~~ 854 (976)
++|+.|++++
T Consensus 547 ~~L~~l~l~~ 556 (844)
T 3j0a_A 547 VSLSVLDITH 556 (844)
T ss_dssp SSCCEEEEEE
T ss_pred CCcCEEEecC
Confidence 5788888887
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=333.55 Aligned_cols=86 Identities=22% Similarity=0.260 Sum_probs=60.9
Q ss_pred CcccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccc-hhhhccccCceee
Q 048829 122 QRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLIKLHHLN 198 (976)
Q Consensus 122 ~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 198 (976)
+.+++|+|++|.++.+ +.+|.++++|++|+|++|.+..+ |..|+++++|++|++++| .+..+| ..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccc
Confidence 3577778877777766 45677777788888877777776 355777777777777774 455554 4577777777777
Q ss_pred cCCCCCccccc
Q 048829 199 NSNTDSLEETP 209 (976)
Q Consensus 199 l~~~~~~~~lp 209 (976)
+++|. +..+|
T Consensus 107 L~~n~-l~~l~ 116 (570)
T 2z63_A 107 AVETN-LASLE 116 (570)
T ss_dssp CTTSC-CCCST
T ss_pred ccccc-cccCC
Confidence 77776 55544
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=342.81 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCceEEEEcCCCcc-----hhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829 699 PSVKVLDVYGCPKL-----ESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773 (976)
Q Consensus 699 ~~L~~L~L~~~~~~-----~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 773 (976)
++|+.|++++|.+. +..+..+.++++|++|++++|...+..|..+.++++|++|++++| .++.+|..... ++|
T Consensus 451 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L 528 (844)
T 3j0a_A 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP-ANL 528 (844)
T ss_dssp TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC-SCC
T ss_pred CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh-ccc
Confidence 55666666666554 223344556666666666665433333455566666666666666 44445444333 566
Q ss_pred cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELP 808 (976)
Q Consensus 774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~ 808 (976)
+.|++++|...+..|..+ .+|+.|++++|.+.
T Consensus 529 ~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 529 EILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp CEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred cEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence 666666666444444332 35566666665544
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.4e-33 Score=325.33 Aligned_cols=144 Identities=18% Similarity=0.180 Sum_probs=95.4
Q ss_pred CCceEEEEcCCCcchhhh--hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEE
Q 048829 699 PSVKVLDVYGCPKLESIA--ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL 776 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (976)
++|++|++++|.+.+..+ ..+..+++|++|++++| .++.+|..+..+++|++|++++| .++.+|.... ++|++|
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~--~~L~~L 436 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIP--QTLEVL 436 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTTSC--TTCSEE
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccchhc--CCceEE
Confidence 567777777776655432 45777788888888885 45567777777888888888887 4555654332 478888
Q ss_pred EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
++++|. +..++ ..+++|++|++++|.++.+|....+++|++|++++|.+....+ ..+..+++|+.|++++
T Consensus 437 ~Ls~N~-l~~~~---~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 437 DVSNNN-LDSFS---LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD----GIFDRLTSLQKIWLHT 506 (549)
T ss_dssp ECCSSC-CSCCC---CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCT----TGGGGCTTCCEEECCS
T ss_pred ECCCCC-hhhhc---ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCH----HHHhcCcccCEEEecC
Confidence 888876 33332 4677788888888777777665556666666666666554433 3355556666666655
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=330.29 Aligned_cols=123 Identities=21% Similarity=0.247 Sum_probs=98.4
Q ss_pred CCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccc-hhhhccC
Q 048829 92 QHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLP-ESVNKLY 168 (976)
Q Consensus 92 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~ 168 (976)
+.+|+|.+.++. ...+++..| ++++|++|+|++|.++.+ |..|+++++|++|+|++|.+..+| ..|++++
T Consensus 28 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCC-------CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccCCc-------cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 468888776553 234555444 999999999999998887 567899999999999999998875 6789999
Q ss_pred CccEEecccccchhccch-hhhccccCceeecCCCCCccc--cccccCCCCCCceecc
Q 048829 169 NLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSNTDSLEE--TPLGIGKLTCLQTLCN 223 (976)
Q Consensus 169 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~~ 223 (976)
+|++|++++ +.+..+|. .|+++++|++|++++|. +.. +|..++++++|++|++
T Consensus 101 ~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 101 SLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp TCCEEECTT-SCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEEC
T ss_pred ccccccccc-cccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeC
Confidence 999999998 47777765 48999999999999987 554 6777888888888854
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9e-33 Score=324.09 Aligned_cols=207 Identities=22% Similarity=0.234 Sum_probs=135.6
Q ss_pred cccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccc-hhhhccCCccEEecccccchhccchh-h
Q 048829 112 PSILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCAD-M 188 (976)
Q Consensus 112 ~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i 188 (976)
..+|+.++ +.|++|+|++|.++.+ |.+|+++++|++|+|++|.+..+| .+|+++++|++|++++| .+..+|.. |
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 94 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWF 94 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHH
T ss_pred ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHh
Confidence 34555544 6788999999988877 678888999999999999888774 67889999999999984 66666655 8
Q ss_pred hccccCceeecCCCCCccc--cccccCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhcc
Q 048829 189 GNLIKLHHLNNSNTDSLEE--TPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARL 266 (976)
Q Consensus 189 ~~L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 266 (976)
+++++|++|++++|. +.. +|..++++++|++|++...... .......+
T Consensus 95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------~~~~~~~~ 144 (549)
T 2z81_A 95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------------SEIRRIDF 144 (549)
T ss_dssp TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTT
T ss_pred ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccc-----------------------------cccCHhhh
Confidence 899999999999887 664 4566888888888854432210 00001124
Q ss_pred CCCCCCceEEEEEccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCC-
Q 048829 267 DGKKNLKELLLRWTRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTA- 345 (976)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~- 345 (976)
.++++|+.|+++++.... .....+..+++|+.|++.++....+|.++.. .+++|++|++++|...+.
T Consensus 145 ~~l~~L~~L~L~~n~l~~-----------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRN-----------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp TTCCEEEEEEEEETTCCE-----------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCC
T ss_pred hcccccCeeeccCCcccc-----------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCcccccc
Confidence 455666677776554311 1223455566677777776666555555432 266777777777665432
Q ss_pred ---CCCCCCCCCCceEEEeCC
Q 048829 346 ---LPSVGQLPSLKHLTVRGV 363 (976)
Q Consensus 346 ---l~~l~~l~~L~~L~L~~~ 363 (976)
.+....+++|+.|+++++
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESC
T ss_pred ccccchhhhhhcccceecccc
Confidence 122334566666666654
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.3e-33 Score=328.24 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=59.5
Q ss_pred CCCccccchhhhccCCccEEecccccchhc------------------cchhhh--ccccCceeecCCCCCccccccccC
Q 048829 154 GTNIRTLPESVNKLYNLHSLLLEDCDRLKK------------------LCADMG--NLIKLHHLNNSNTDSLEETPLGIG 213 (976)
Q Consensus 154 ~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~i~ 213 (976)
+|.++.+|.+|+++++|++|+|++| .+.. +|..++ ++++|++|++++|.....+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 4677779999999999999999995 5666 899988 999999999999987778888899
Q ss_pred CCCCCceecc
Q 048829 214 KLTCLQTLCN 223 (976)
Q Consensus 214 ~L~~L~~L~~ 223 (976)
++++|++|++
T Consensus 271 ~l~~L~~L~L 280 (636)
T 4eco_A 271 ALPEMQLINV 280 (636)
T ss_dssp TCSSCCEEEC
T ss_pred cCCCCCEEEC
Confidence 9999988853
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=315.08 Aligned_cols=224 Identities=17% Similarity=0.158 Sum_probs=154.3
Q ss_pred ccccEEEeeccCCcccCcccc-----CCCCCccEEEeecCCCCCCCCCcCC-----CCCCcEEEEccCCCCCCCCCcccc
Q 048829 534 CRLEYLRLRYCEGLVKLPQSS-----LSLSSLKEIEIYKCSSLVSFPEVAL-----PSKLKKIEIRECDALKSLPEPWMC 603 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~-----~~l~~L~~L~l~~c~~l~~l~~~~~-----~~~L~~L~l~~~~~l~~l~~~~~~ 603 (976)
++|+.|++++|...+.+|..+ ..+++|+.++++++ .+ .+|.... -.+|+.|++++|. +..++..
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~-~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--- 320 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VF-GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCP--- 320 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CC-CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCCC---
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEecccccc-ce-ecchhhhhcccccCceeEEEcCCCc-cccccch---
Confidence 589999999988777788777 77888888888884 33 5552110 1457777777776 3222210
Q ss_pred CCCCcccEEEEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCC
Q 048829 604 DTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKN 683 (976)
Q Consensus 604 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 683 (976)
..+++ |++|++++|...+.+ |..+..+
T Consensus 321 ~~l~~-----------------------L~~L~Ls~n~l~~~~--~~~~~~l---------------------------- 347 (520)
T 2z7x_B 321 SKISP-----------------------FLHLDFSNNLLTDTV--FENCGHL---------------------------- 347 (520)
T ss_dssp SSCCC-----------------------CCEEECCSSCCCTTT--TTTCCCC----------------------------
T ss_pred hhCCc-----------------------ccEEEeECCccChhh--hhhhccC----------------------------
Confidence 23444 455555554322211 2211111
Q ss_pred CcccccccccccCCCCCceEEEEcCCCcch--hhhhhhcCCCCCceEEeecCCCccccccc-ccCCCCCcEEEccCCCCC
Q 048829 684 ELPATLESLEVGNLPPSVKVLDVYGCPKLE--SIAERLDNNTSLETINISNCENLKILSSG-LHNLCQLQQIGIGGCGNL 760 (976)
Q Consensus 684 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~~l 760 (976)
++|++|++++|.+.+ .+|..+..+++|++|++++|.....+|.. +..+++|++|++++|...
T Consensus 348 ---------------~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 348 ---------------TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp ---------------SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred ---------------CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 677888888887765 56777888889999999887655546654 677889999999988665
Q ss_pred CccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchh
Q 048829 761 ESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSM 834 (976)
Q Consensus 761 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 834 (976)
+.+|..+. ++|++|++++|. ++.+|..+..+++|++|++++|.++.++.. ..+++|++|++++|+......
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 66665443 689999999887 558888778889999999999888888764 346789999999998876543
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.9e-33 Score=327.86 Aligned_cols=364 Identities=15% Similarity=0.146 Sum_probs=191.9
Q ss_pred CCCCCCCceeEeeccCCCC------------------CCCccC--CCCCCCccEEEEecCCCCCCCC-CCCCCCCCceEE
Q 048829 301 LKPHKNLEQFGICGYGGTK------------------FPTWLG--DSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHLT 359 (976)
Q Consensus 301 l~~~~~L~~L~l~~~~~~~------------------~p~~~~--~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 359 (976)
+..+++|+.|+++++.... +|..+. . +++|++|++++|...+.+| .++.+++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc--cCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 3445555566666555554 777776 5 8899999999998887777 788899999999
Q ss_pred EeCCCCcee--eCccccCCCCCCCCCCcceeecccccccccccccCCCCCccCCcccceeecccCcccccCCCCCCCCcc
Q 048829 360 VRGVSRVKR--LGSEFYGDDSPIPFPCLETLRFEDLQEWEVWISHGSGQGVEGFPKLRELHILECPKLRGTFPEHLPVLE 437 (976)
Q Consensus 360 L~~~~~l~~--i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~ 437 (976)
+++|..+.. ++..+. +|. ....+++|++|++++| +++ .+|..
T Consensus 280 Ls~n~~l~~~~lp~~~~---------~L~--------------------~~~~l~~L~~L~L~~n-~l~-~ip~~----- 323 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQ---------ALA--------------------DAPVGEKIQIIYIGYN-NLK-TFPVE----- 323 (636)
T ss_dssp CTTCTTSCHHHHHHHHH---------HHH--------------------HSGGGGTCCEEECCSS-CCS-SCCCH-----
T ss_pred CcCCCCCccccchHHHH---------hhh--------------------ccccCCCCCEEECCCC-cCC-ccCch-----
Confidence 988752321 211100 000 0233477777777777 565 55520
Q ss_pred eEEEeccccccccCCCCCcccEEEEccccceeeecccCCCCCCceEEeccCCCCCcccccccCCCCCeEEEcCCCCcccc
Q 048829 438 MLVIEGCEELLVSVLSLPALCKFLIGGCKKVVWESATGHLGSQNSVVCRDTSNQSHDGLLQDICSLKSLEIRGCPKLQSL 517 (976)
Q Consensus 438 ~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 517 (976)
..+..+++|+.|+++++... ..+
T Consensus 324 -----------~~l~~l~~L~~L~L~~N~l~----------------------------------------------g~i 346 (636)
T 4eco_A 324 -----------TSLQKMKKLGMLECLYNQLE----------------------------------------------GKL 346 (636)
T ss_dssp -----------HHHTTCTTCCEEECCSCCCE----------------------------------------------EEC
T ss_pred -----------hhhccCCCCCEEeCcCCcCc----------------------------------------------cch
Confidence 01112222222222222111 011
Q ss_pred hhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCC-ccEEEeecCCCCCCCCCcCC---CCCCcEEEEccCCC
Q 048829 518 VAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSS-LKEIEIYKCSSLVSFPEVAL---PSKLKKIEIRECDA 593 (976)
Q Consensus 518 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~~~~ 593 (976)
+ . +.. .++|+.|++++|... .+|..+..+++ |++|++++ +.++.+|.... +++|++|++++|..
T Consensus 347 p-~-----~~~----l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 347 P-A-----FGS----EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp C-C-----CEE----EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS-SCCSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred h-h-----hCC----CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC-CcCcccchhhhhcccCccCEEECcCCcC
Confidence 1 0 000 156777777776554 67777788888 88888888 45667775322 23688888888874
Q ss_pred CCCCCCccc-----cCCCCcccEEEEecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcc
Q 048829 594 LKSLPEPWM-----CDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLE 666 (976)
Q Consensus 594 l~~l~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~ 666 (976)
...+|..+. .-.+++|++|++++|.. +.++.. ..+++|+.|++++|... .+ |...... +
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l~-~i--~~~~~~~---------~- 480 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNMLT-EI--PKNSLKD---------E- 480 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCCS-BC--CSSSSEE---------T-
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCCC-Cc--CHHHhcc---------c-
Confidence 443333221 00445677777776643 344432 23455666666665422 22 2211110 0
Q ss_pred eEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhc--CCCCCceEEeecCCCccccccccc
Q 048829 667 NLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLD--NNTSLETINISNCENLKILSSGLH 744 (976)
Q Consensus 667 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~ 744 (976)
...|.++ ++|++|++++|.+. .+|..+. .+++|++|++++|... .+|..+.
T Consensus 481 ---~~~~~~l----------------------~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 533 (636)
T 4eco_A 481 ---NENFKNT----------------------YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPL 533 (636)
T ss_dssp ---TEECTTG----------------------GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGG
T ss_pred ---ccccccc----------------------CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC-CcChhhh
Confidence 0000000 25556666665554 4444444 5555555555554333 2555555
Q ss_pred CCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeee
Q 048829 745 NLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRI 824 (976)
Q Consensus 745 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l 824 (976)
++++|++|++++|+ ++++|...+.+|..+..+++|++|++++|.+..+|.. +.++|+.|++
T Consensus 534 ~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~L~~L~L 594 (636)
T 4eco_A 534 NSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-ITPNISVLDI 594 (636)
T ss_dssp GCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CCTTCCEEEC
T ss_pred cCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-HhCcCCEEEC
Confidence 55555555554332 1133444455555555556666666666555555433 3355566666
Q ss_pred cCCCCcc
Q 048829 825 EGNMGIW 831 (976)
Q Consensus 825 ~~~~~~~ 831 (976)
++|++..
T Consensus 595 s~N~l~~ 601 (636)
T 4eco_A 595 KDNPNIS 601 (636)
T ss_dssp CSCTTCE
T ss_pred cCCCCcc
Confidence 5555443
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-32 Score=324.09 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=98.4
Q ss_pred CCccccchhhhccCCccEEecccccchhc------------------cchhhh--ccccCceeecCCCCCccccccccCC
Q 048829 155 TNIRTLPESVNKLYNLHSLLLEDCDRLKK------------------LCADMG--NLIKLHHLNNSNTDSLEETPLGIGK 214 (976)
Q Consensus 155 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~lp~~i~~ 214 (976)
|.+..+|.+|+++++|++|+|++| .+.. +|..++ +|++|++|++++|.....+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 556668999999999999999995 5665 898877 9999999999999877888988999
Q ss_pred CCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhh-hhhhccCCCCCCceEEEEEccCCCCCCChhhhh
Q 048829 215 LTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGN-AKEARLDGKKNLKELLLRWTRSTDGSSSREAET 293 (976)
Q Consensus 215 L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 293 (976)
|++|++|++..... ... ..+..
T Consensus 514 L~~L~~L~Ls~N~~-----------------------------lsg~~iP~~---------------------------- 536 (876)
T 4ecn_A 514 LPELQSLNIACNRG-----------------------------ISAAQLKAD---------------------------- 536 (876)
T ss_dssp CSSCCEEECTTCTT-----------------------------SCHHHHHHH----------------------------
T ss_pred CCCCCEEECcCCCC-----------------------------cccccchHH----------------------------
Confidence 99999885322110 000 00000
Q ss_pred Hhhhcc-CCCCCCCCceeEeeccCCCCCCC--ccCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceEEEeCC
Q 048829 294 EMGVLD-MLKPHKNLEQFGICGYGGTKFPT--WLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGV 363 (976)
Q Consensus 294 ~~~~l~-~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 363 (976)
...+. .+..+++|+.|+++++....+|. ++.. +++|+.|++++|... .+|.++.+++|+.|++++|
T Consensus 537 -i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 537 -WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp -HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSS
T ss_pred -HHhhhhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCC
Confidence 00111 33345567777777776666776 5554 667777777766654 5555666666666666554
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-31 Score=308.56 Aligned_cols=104 Identities=24% Similarity=0.282 Sum_probs=68.6
Q ss_pred ccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchhhhc
Q 048829 113 SILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGN 190 (976)
Q Consensus 113 ~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 190 (976)
.+|..++ ++|++|+|++|.++.+ |..|.++++|++|+|++|.+..+ |..|+++++|++|+|++ +.+..+|.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NKLVKISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-SCCCEEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-CceeecCcc--c
Confidence 4454444 6677777777777666 35667777777777777777766 56677777777777777 356666655 6
Q ss_pred cccCceeecCCCCCccc--cccccCCCCCCceec
Q 048829 191 LIKLHHLNNSNTDSLEE--TPLGIGKLTCLQTLC 222 (976)
Q Consensus 191 L~~L~~L~l~~~~~~~~--lp~~i~~L~~L~~L~ 222 (976)
+++|++|++++|. +.. +|..++++++|++|+
T Consensus 89 l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 89 TVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp CCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEE
T ss_pred cCCccEEeccCCc-cccccchhhhccCCcceEEE
Confidence 7777777777776 443 345566666666664
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=1e-31 Score=321.79 Aligned_cols=239 Identities=13% Similarity=0.116 Sum_probs=121.7
Q ss_pred ccccEEEeeccCCcccCccccCCCCC-ccEEEeecCCCCCCCCCcCC-C--CCCcEEEEccCCCCCCCCCc---cccCCC
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSS-LKEIEIYKCSSLVSFPEVAL-P--SKLKKIEIRECDALKSLPEP---WMCDTS 606 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~-~--~~L~~L~l~~~~~l~~l~~~---~~~~~l 606 (976)
++|+.|++++|... .+|..+..+++ |++|++++ +.++.+|.... . ++|+.|++++|.....+|.. ...-.+
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS-SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcC-CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 56666666666554 66666777777 77777777 34556664221 2 33777777777633322211 110123
Q ss_pred CcccEEEEecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCC
Q 048829 607 SSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNE 684 (976)
Q Consensus 607 ~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 684 (976)
++|+.|++++|.. ..+|.. ..+++|+.|++++|. ++.+ |...... + ...|.++
T Consensus 673 ~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N~-L~~i--p~~~~~~---------~----~~~l~nl-------- 727 (876)
T 4ecn_A 673 INASTVTLSYNEI-QKFPTELFATGSPISTIILSNNL-MTSI--PENSLKP---------K----DGNYKNT-------- 727 (876)
T ss_dssp CCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSCC-CSCC--CTTSSSC---------T----TSCCTTG--------
T ss_pred CCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCCc-CCcc--ChHHhcc---------c----ccccccc--------
Confidence 4566666666532 234332 234455555555552 2222 2211110 0 0000000
Q ss_pred cccccccccccCCCCCceEEEEcCCCcchhhhhhhc--CCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCc
Q 048829 685 LPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLD--NNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLES 762 (976)
Q Consensus 685 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~ 762 (976)
++|+.|+|++|.+. .+|..+. .+++|+.|++++|.. ..+|..+.++++|+.|++++|+
T Consensus 728 --------------~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~---- 787 (876)
T 4ecn_A 728 --------------YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQR---- 787 (876)
T ss_dssp --------------GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCB----
T ss_pred --------------CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCC----
Confidence 24555555555444 4444444 555555555555432 2245555555555555555432
Q ss_pred cCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchh
Q 048829 763 FPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSM 834 (976)
Q Consensus 763 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 834 (976)
++++|...+.+|..+..+++|+.|++++|.+..+|.. +.++|+.|++++|++....+
T Consensus 788 --------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 788 --------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-LTPQLYILDIADNPNISIDV 844 (876)
T ss_dssp --------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CCSSSCEEECCSCTTCEEEC
T ss_pred --------------CcccccccccChHHHhcCCCCCEEECCCCCCCccCHh-hcCCCCEEECCCCCCCccCh
Confidence 1223555566666666677777777777776666544 34567777777776655443
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=8.8e-31 Score=313.85 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCcch-hhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEE
Q 048829 699 PSVKVLDVYGCPKLE-SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRL 776 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 776 (976)
++|+.|++++|...+ ..|..+..+++|++|++++|...+..|..|.++++|++|+|++| .++.++. .+..+++|++|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEE
Confidence 445555555554333 23445556666666666665433334555666666666666666 3333332 34455666666
Q ss_pred EecCCcCcccCCCcCCCC-CccceEEEeCCCCCC
Q 048829 777 EIYDCKRLEALPKGLHNL-TSLQQLTIIGGELPS 809 (976)
Q Consensus 777 ~l~~c~~l~~~~~~l~~l-~~L~~L~l~~~~l~~ 809 (976)
++++|...+..|..+..+ ++|++|++++|.+..
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 666666555555555555 456666666666553
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2.4e-29 Score=301.36 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccc-ccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKI-LSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (976)
++++.++++.|......+..+..+++|++|++++|..... .|..+..+++|++|++++|...+..|..+..+++|++|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 6788888888888888888888888999999988776554 477788888999999998854444456677788899999
Q ss_pred ecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC---CCccceeeecCCCCcc
Q 048829 778 IYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL---PTNLHSLRIEGNMGIW 831 (976)
Q Consensus 778 l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~---~~~L~~L~l~~~~~~~ 831 (976)
+++|......|..+..+++|++|++++|.|..++...+ +++|+.|++++|+..-
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99887544445677888889999988888888766533 4678888888777653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=6.8e-29 Score=290.93 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCcch--hhhhhhcCCCCCceEEeecCCCcccccc-cccCCCCCcEEEccCCCCCCccCCCCCCCCCccE
Q 048829 699 PSVKVLDVYGCPKLE--SIAERLDNNTSLETINISNCENLKILSS-GLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRR 775 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 775 (976)
++|++|++++|.+.+ .+|..+..+++|++|++++|.....+|. .+..+++|++|++++|...+.+|..+. ++|++
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence 567777777776655 4456677788888888888655543544 366678888888888865555554332 57888
Q ss_pred EEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchh
Q 048829 776 LEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSM 834 (976)
Q Consensus 776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 834 (976)
|++++|. ++.+|..+..+++|++|++++|.++.++.. ..+++|+.|++++|+......
T Consensus 455 L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 455 LDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred EECCCCc-CcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 8888886 667777777888888888888888877764 446788888888887765443
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.6e-29 Score=283.55 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=41.5
Q ss_pred cccccCCcccEEEccCCccccccccccCCCcccEEecCCCCcc-ccchhhhccCCccEEecccccchhccchhhhccccC
Q 048829 116 PKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL 194 (976)
Q Consensus 116 ~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 194 (976)
|+-.+.++||+|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++++|+++++++|.. .+|
T Consensus 5 p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l 73 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQA 73 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTC
T ss_pred ccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCC
Confidence 3344567888888888888888888888888888888888877 7788888888887777777631 567
Q ss_pred ceeecCCCCCcccccc
Q 048829 195 HHLNNSNTDSLEETPL 210 (976)
Q Consensus 195 ~~L~l~~~~~~~~lp~ 210 (976)
++|++++|. +..+|.
T Consensus 74 ~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 74 HELELNNLG-LSSLPE 88 (454)
T ss_dssp SEEECTTSC-CSCCCS
T ss_pred CEEEecCCc-cccCCC
Confidence 888888877 666554
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=5.2e-29 Score=291.94 Aligned_cols=105 Identities=30% Similarity=0.319 Sum_probs=78.1
Q ss_pred ccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchhhhc
Q 048829 113 SILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGN 190 (976)
Q Consensus 113 ~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 190 (976)
.+|..++ ++|++|+|++|.++.+ |.+|+++++|++|+|++|.++.+ |..|+++++|++|+|++ +.+..+|.. .
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~ 119 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC--P 119 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC--C
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc--c
Confidence 4555444 6788888888888877 46778888888888888888877 56788888888888888 467777766 7
Q ss_pred cccCceeecCCCCCccccc--cccCCCCCCceecc
Q 048829 191 LIKLHHLNNSNTDSLEETP--LGIGKLTCLQTLCN 223 (976)
Q Consensus 191 L~~L~~L~l~~~~~~~~lp--~~i~~L~~L~~L~~ 223 (976)
+++|++|++++|. +..+| ..++++++|++|++
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEE
T ss_pred cccCCEEECCCCC-ccccCchHhhcccCcccEEec
Confidence 8888888888887 66654 45777777777743
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=8.3e-29 Score=279.41 Aligned_cols=95 Identities=26% Similarity=0.305 Sum_probs=61.9
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
++|++|++++|.... +| .+..+++|++|++++ +.++.+|. .+++|++|++++|. ++.+|. + ..+++|++|+
T Consensus 173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~-N~l~~l~~--~~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~ 243 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN-NSLKKLPD--LPLSLESIVAGNNI-LEELPE-L--QNLPFLTTIY 243 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS-SCCSSCCC--CCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEE
T ss_pred ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC-CcCCcCCC--CcCcccEEECcCCc-CCcccc-c--CCCCCCCEEE
Confidence 356666666664433 55 577888889998888 46666664 34688888888886 667764 2 4677788888
Q ss_pred EecCCCCcccccccCCCCCcEEeeccC
Q 048829 614 IWDCHSLTYIAEVQLPLSLKRLDIQRC 640 (976)
Q Consensus 614 l~~~~~l~~~~~~~~~~~L~~L~l~~~ 640 (976)
+++|. ++.++. .+++|+.|++++|
T Consensus 244 l~~N~-l~~l~~--~~~~L~~L~l~~N 267 (454)
T 1jl5_A 244 ADNNL-LKTLPD--LPPSLEALNVRDN 267 (454)
T ss_dssp CCSSC-CSSCCS--CCTTCCEEECCSS
T ss_pred CCCCc-CCcccc--cccccCEEECCCC
Confidence 87763 333332 2345666666655
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.3e-27 Score=269.87 Aligned_cols=87 Identities=24% Similarity=0.251 Sum_probs=66.8
Q ss_pred ccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccC
Q 048829 115 LPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKL 194 (976)
Q Consensus 115 ~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 194 (976)
+..+.++++|++|++++|.++.+| .++.+++|++|+|++|.++.+| ++++++|++|++++| .+..+| ++++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence 334457888888888888888776 6888888888888888888875 778888888888884 566665 7788888
Q ss_pred ceeecCCCCCcccc
Q 048829 195 HHLNNSNTDSLEET 208 (976)
Q Consensus 195 ~~L~l~~~~~~~~l 208 (976)
++|++++|. +..+
T Consensus 109 ~~L~L~~N~-l~~l 121 (457)
T 3bz5_A 109 TYLNCDTNK-LTKL 121 (457)
T ss_dssp CEEECCSSC-CSCC
T ss_pred CEEECCCCc-CCee
Confidence 888888876 4444
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.4e-25 Score=255.95 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=70.0
Q ss_pred cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeec
Q 048829 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNN 199 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 199 (976)
.+++++.|+++++.+..+|. +..+++|++|+|++|.+..+|. ++++++|++|++++| .+..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 56678888888888877763 7778888888888888887766 888888888888884 6666665 888888888888
Q ss_pred CCCCCccccccccCCCCCCcee
Q 048829 200 SNTDSLEETPLGIGKLTCLQTL 221 (976)
Q Consensus 200 ~~~~~~~~lp~~i~~L~~L~~L 221 (976)
++|. +..+|. ++++++|++|
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEE
T ss_pred CCCC-CCCChH-HcCCCCCCEE
Confidence 8876 555543 4444444444
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.8e-25 Score=255.21 Aligned_cols=265 Identities=16% Similarity=0.118 Sum_probs=181.9
Q ss_pred ccccEEEeeccCCcccCccc-cCCCCCccEEEeecCCCCCCCCCcCC----CCCCcEEEEccCCCCCCCCCcccc-----
Q 048829 534 CRLEYLRLRYCEGLVKLPQS-SLSLSSLKEIEIYKCSSLVSFPEVAL----PSKLKKIEIRECDALKSLPEPWMC----- 603 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~----~~~L~~L~l~~~~~l~~l~~~~~~----- 603 (976)
++|++|++++|......|.. +..+++|++|++++ +.++.++.... ..+|+.|++++|. +..++.....
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCG 206 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhhhccccccccccccccCc-ccccchhhccccccc
Confidence 67888888888776666655 78899999999998 45555543221 3678889998887 5555543220
Q ss_pred --CCCCcccEEEEecCCCCcccccc----cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCcc
Q 048829 604 --DTSSSLEILKIWDCHSLTYIAEV----QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLT 677 (976)
Q Consensus 604 --~~l~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 677 (976)
..+++|++|++++|......+.. ....+|+.|++++|......
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------------- 255 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS------------------------------- 255 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-------------------------------
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc-------------------------------
Confidence 24567888888887654433322 12356777777777543321
Q ss_pred ccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCC
Q 048829 678 CIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGC 757 (976)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 757 (976)
+....+...........-+++|++|++++|.+.+..|..+..+++|++|++++|......|..+.++++|++|++++|
T Consensus 256 --~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 256 --FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp --TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 000000000000000011268999999999998888889999999999999997666666778888999999999999
Q ss_pred CCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccch
Q 048829 758 GNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKS 833 (976)
Q Consensus 758 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~ 833 (976)
...+..|..+..+++|++|++++|...+..|..+..+++|++|++++|.++.++.. ..+++|++|++++|++....
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 54444455667788999999999986666678888999999999999999887763 33567777777777665443
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=6.3e-25 Score=250.76 Aligned_cols=207 Identities=18% Similarity=0.139 Sum_probs=130.1
Q ss_pred CCceEEEEcCCCcchhhhh--------hhcCCCCCceEEeecCCCcccccccccC---CCCCcEEEccCCCCCCccCC--
Q 048829 699 PSVKVLDVYGCPKLESIAE--------RLDNNTSLETINISNCENLKILSSGLHN---LCQLQQIGIGGCGNLESFPE-- 765 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~--------~~~~l~~L~~L~l~~c~~l~~lp~~~~~---l~~L~~L~l~~~~~l~~~~~-- 765 (976)
.+|+.|++++|...+..+. .+..+++|++|++++|......|..+.. .++|+.|++++|........
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 3556666666555443222 1234456666666665544444444433 25666666666543321100
Q ss_pred ----------CCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccch
Q 048829 766 ----------GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKS 833 (976)
Q Consensus 766 ----------~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~ 833 (976)
.....++|++|++++|...+..|..+..+++|++|++++|.+..++.. ..+++|++|++++|.+....
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 011235778888888776666677777788888888888777766543 33577888888887775554
Q ss_pred hhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecC
Q 048829 834 MIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYD 912 (976)
Q Consensus 834 ~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~ 912 (976)
+ ..+.++++|++|++++ +...+..|..+ ..+++|++|++++ +.++.+|. .+..+++|++|++++
T Consensus 340 ~----~~~~~l~~L~~L~Ls~-N~l~~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 340 S----RMFENLDKLEVLDLSY-NHIRALGDQSF---------LGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp G----GGGTTCTTCCEEECCS-SCCCEECTTTT---------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred h----hHhcCcccCCEEECCC-CcccccChhhc---------cccccccEEECCC-CccccCCHhHhccCCcccEEEccC
Confidence 4 4577888888888888 33333334443 5788888888888 57777776 457788888888888
Q ss_pred CCCccccC
Q 048829 913 CPKLKYFP 920 (976)
Q Consensus 913 c~~l~~i~ 920 (976)
|+.....|
T Consensus 405 N~l~~~~~ 412 (455)
T 3v47_A 405 NPWDCSCP 412 (455)
T ss_dssp SCBCCCTT
T ss_pred CCcccCCC
Confidence 77555554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=6.2e-24 Score=242.39 Aligned_cols=303 Identities=17% Similarity=0.213 Sum_probs=192.8
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
++|+.|++++|......+ +..+++|++|++++ +.++.++....+++|++|++++|. +..++. + ..+++|++|+
T Consensus 90 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~ 162 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFN-NQITDIDPLKNLTNLNRLELSSNT-ISDISA-L--SGLTSLQQLS 162 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS-SCCCCCGGGTTCTTCSEEEEEEEE-ECCCGG-G--TTCTTCSEEE
T ss_pred ccCCEEECCCCccccChh--hcCCCCCCEEECCC-CCCCCChHHcCCCCCCEEECCCCc-cCCChh-h--ccCCcccEee
Confidence 455555555554433222 55555666666655 344444444445556666665554 444332 1 3455555555
Q ss_pred EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829 614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE 693 (976)
Q Consensus 614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 693 (976)
+++ .+..++....+++|+.|++++|. ++.+ + .
T Consensus 163 l~~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~-~------------------------------------------ 194 (466)
T 1o6v_A 163 FGN--QVTDLKPLANLTTLERLDISSNK-VSDI--S-V------------------------------------------ 194 (466)
T ss_dssp EEE--SCCCCGGGTTCTTCCEEECCSSC-CCCC--G-G------------------------------------------
T ss_pred cCC--cccCchhhccCCCCCEEECcCCc-CCCC--h-h------------------------------------------
Confidence 543 12222223334445555555543 1111 0 0
Q ss_pred ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829 694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773 (976)
Q Consensus 694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 773 (976)
+..+ ++|++|++++|.+.+..+ ++.+++|++|++++|. ++.++ .+..+++|++|++++|. +..++. +..+++|
T Consensus 195 l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L 267 (466)
T 1o6v_A 195 LAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKL 267 (466)
T ss_dssp GGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTC
T ss_pred hccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCC
Confidence 1111 678888888887766555 6778888888888864 44443 46778888888888884 444443 5667888
Q ss_pred cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR 853 (976)
Q Consensus 774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 853 (976)
++|++++|. +..++. +..+++|++|++++|.+..++....+++|+.|++++|.+....+ +..+++|++|+++
T Consensus 268 ~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 268 TELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFY 339 (466)
T ss_dssp SEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECC
T ss_pred CEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh------hccCccCCEeECC
Confidence 889988887 444444 77888889999988888887776677889999999888766543 5688899999998
Q ss_pred ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCC
Q 048829 854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPE 921 (976)
Q Consensus 854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~ 921 (976)
+| .+..++ . +..+++|+.|++++| .+..++. +..+++|+.|++++|+ ++.+|.
T Consensus 340 ~n--~l~~~~-~---------l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 340 NN--KVSDVS-S---------LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp SS--CCCCCG-G---------GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred CC--ccCCch-h---------hccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence 83 344432 1 357889999999985 5555554 7888999999999854 454443
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.9e-24 Score=234.50 Aligned_cols=194 Identities=18% Similarity=0.141 Sum_probs=88.0
Q ss_pred hcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccc
Q 048829 719 LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQ 798 (976)
Q Consensus 719 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~ 798 (976)
+..+++|++|++++|.. ..++. +..+++|++|++++| .++.++. +..+++|+.|++++|. +..++. +..+++|+
T Consensus 151 ~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~ 224 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLN 224 (347)
T ss_dssp GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCC
T ss_pred hhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCC
Confidence 34444444444444322 22211 334444444444444 2222222 3334444444444443 222211 34444444
Q ss_pred eEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCc
Q 048829 799 QLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLP 878 (976)
Q Consensus 799 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l 878 (976)
+|++++|.+..++....+++|++|++++|.+... ..+..+++|++|++++| .+..++. +..+
T Consensus 225 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n--~l~~~~~----------~~~l 286 (347)
T 4fmz_A 225 SLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSN--QISDISV----------LNNL 286 (347)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSS--CCCCCGG----------GGGC
T ss_pred EEEccCCccCCCcchhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCC--ccCCChh----------hcCC
Confidence 4444444444444433444555555555544332 12445556666666552 2222221 2355
Q ss_pred cccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCCc
Q 048829 879 ASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCP 937 (976)
Q Consensus 879 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~ 937 (976)
++|+.|++++|+.-...|..+..+++|++|++++|+ ++.+++....++|++|++++|+
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 666666666643323333455666666666666654 4444332223566666666664
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=6.4e-24 Score=243.66 Aligned_cols=295 Identities=18% Similarity=0.211 Sum_probs=212.8
Q ss_pred cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCccc
Q 048829 533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLE 610 (976)
Q Consensus 533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 610 (976)
+++++.|++++|......+..+..+++|++|++++ +.++.++. ...+++|++|++++|. ++.++...+ ..+++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCC-CccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCC
Confidence 36778888888776666666778888888888888 46665533 3447788888888887 677776554 5678888
Q ss_pred EEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccc
Q 048829 611 ILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATL 689 (976)
Q Consensus 611 ~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 689 (976)
+|++++|......+.. ..+++|+.|++++|...... +..+.
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~------------------------------------ 149 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS--HRAFS------------------------------------ 149 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC--TTSST------------------------------------
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeC--hhhcc------------------------------------
Confidence 8888877543332222 44556777777766421111 11111
Q ss_pred ccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCC
Q 048829 690 ESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLP 769 (976)
Q Consensus 690 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 769 (976)
.+ ++|++|++++|.+.+..+..+..+++|+.|++++|......+..+..+++|++|++++|+.++.+|.....
T Consensus 150 ------~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 150 ------GL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp ------TC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred ------CC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence 11 67888888888887777777888899999999987655555667888899999999998888888877777
Q ss_pred CCCccEEEecCCcCcccCC-CcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCc
Q 048829 770 CAKLRRLEIYDCKRLEALP-KGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS 846 (976)
Q Consensus 770 ~~~L~~L~l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 846 (976)
..+|++|++++|. ++.+| ..+..+++|+.|++++|.+..++.. ..+++|+.|++++|.+....+ ..+.++++
T Consensus 223 ~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~ 297 (477)
T 2id5_A 223 GLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNY 297 (477)
T ss_dssp TCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTT
T ss_pred CccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH----HHhcCccc
Confidence 7789999999887 55666 4678888999999998888877654 345788888888888777655 56788888
Q ss_pred ccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccC
Q 048829 847 LRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFP 890 (976)
Q Consensus 847 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 890 (976)
|+.|++++ +.+..++... |..+++|+.|++++++
T Consensus 298 L~~L~L~~--N~l~~~~~~~--------~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 298 LRVLNVSG--NQLTTLEESV--------FHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCS--SCCSCCCGGG--------BSCGGGCCEEECCSSC
T ss_pred CCEEECCC--CcCceeCHhH--------cCCCcccCEEEccCCC
Confidence 88888888 3556666543 3577888888888843
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.1e-24 Score=232.43 Aligned_cols=301 Identities=14% Similarity=0.131 Sum_probs=166.4
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
++|+.|++++|... .++ .+..+++|++|++++| .++.++....+++|++|++++|. ++.++. + ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~--~-~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA--L-QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG--G-TTCTTCSEEE
T ss_pred ccccEEEEeCCccc-cch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH--H-cCCCcCCEEE
Confidence 45555555554332 222 2445555555555552 44444444445555555555554 444432 1 3455555555
Q ss_pred EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829 614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE 693 (976)
Q Consensus 614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 693 (976)
+++|. +..++....+++|+.|++++|..++.+ +. +..+
T Consensus 117 l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l-------------------------------------- 154 (347)
T 4fmz_A 117 LNEDN-ISDISPLANLTKMYSLNLGANHNLSDL--SP-LSNM-------------------------------------- 154 (347)
T ss_dssp CTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCC--GG-GTTC--------------------------------------
T ss_pred CcCCc-ccCchhhccCCceeEEECCCCCCcccc--cc-hhhC--------------------------------------
Confidence 55543 223333334444555555555433322 10 1110
Q ss_pred ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829 694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773 (976)
Q Consensus 694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 773 (976)
++|++|++++|...+..+ +..+++|++|++++|. ++.++. +..+++|++|++++|. +..++. +..+++|
T Consensus 155 -----~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L 223 (347)
T 4fmz_A 155 -----TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRL 223 (347)
T ss_dssp -----TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTC
T ss_pred -----CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCC-CCCCch-hhcCCcC
Confidence 455666666655444333 5566666666666653 333433 5566677777776663 333332 4455667
Q ss_pred cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR 853 (976)
Q Consensus 774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 853 (976)
++|++++|. +..++. +..+++|++|++++|.+..++....+++|++|++++|.+.... .+..+++|+.|+++
T Consensus 224 ~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 224 NSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLN 295 (347)
T ss_dssp CEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECC
T ss_pred CEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECc
Confidence 777777666 334433 6666777777777776666655556667777777777655531 35677777778777
Q ss_pred ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829 854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 914 (976)
+| ......+... ..+++|+.|++++| .++.++. +..+++|++|++++|+
T Consensus 296 ~n-~l~~~~~~~l---------~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 296 NN-QLGNEDMEVI---------GGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SS-CCCGGGHHHH---------HTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CC-cCCCcChhHh---------hccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence 73 2222222222 46778888888884 4666664 7778888888888865
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.3e-23 Score=232.89 Aligned_cols=313 Identities=16% Similarity=0.170 Sum_probs=170.4
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
++|+.|++++|... .+| .+..+++|++|++++ +.++.++ ...+++|++|++++|. ++.++ + ..+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~-~~~-~l~~l~~L~~L~Ls~-n~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~--~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTS-NNITTLD-LSQNTNLTYLACDSNK-LTNLD--V--TPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCC-CCT-TGGGCTTCSEEECCS-SCCSCCC-CTTCTTCSEEECCSSC-CSCCC--C--TTCTTCCEEE
T ss_pred CCCCEEEccCCCcc-cCh-hhcccCCCCEEEccC-CcCCeEc-cccCCCCCEEECcCCC-Cceee--c--CCCCcCCEEE
Confidence 45555555554332 233 345555555555555 3444443 3345555555555555 44443 1 3455555555
Q ss_pred EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829 614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE 693 (976)
Q Consensus 614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 693 (976)
+++|. ++.++ ...+++|+.|++++|. ++.+ + +.. .++|+.|+++++..+..+ +
T Consensus 113 L~~N~-l~~l~-~~~l~~L~~L~l~~N~-l~~l--~--l~~-------l~~L~~L~l~~n~~~~~~-~------------ 165 (457)
T 3bz5_A 113 CDTNK-LTKLD-VSQNPLLTYLNCARNT-LTEI--D--VSH-------NTQLTELDCHLNKKITKL-D------------ 165 (457)
T ss_dssp CCSSC-CSCCC-CTTCTTCCEEECTTSC-CSCC--C--CTT-------CTTCCEEECTTCSCCCCC-C------------
T ss_pred CCCCc-CCeec-CCCCCcCCEEECCCCc-ccee--c--ccc-------CCcCCEEECCCCCccccc-c------------
Confidence 55552 22232 2334455555555553 2212 1 111 134555555555433321 1
Q ss_pred ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829 694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773 (976)
Q Consensus 694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 773 (976)
+..+ ++|++|++++|.+.+ +| +..+++|++|++++|. ++.+ .+..+++|++|++++| .++.+| +..+++|
T Consensus 166 ~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L 235 (457)
T 3bz5_A 166 VTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQL 235 (457)
T ss_dssp CTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred cccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCC-cccccC--ccccCCC
Confidence 1111 677888888877665 33 6777888888888754 3444 3667788888888887 445566 5667788
Q ss_pred cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR 853 (976)
Q Consensus 774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 853 (976)
+.|++++|. ++.+| ++.+++|+.|+++++. |+.|++++|......+ +..+++|+.|+++
T Consensus 236 ~~L~l~~N~-l~~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~------~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 236 TYFDCSVNP-LTELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ------AEGCRKIKELDVT 294 (457)
T ss_dssp SEEECCSSC-CSCCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE------CTTCTTCCCCCCT
T ss_pred CEEEeeCCc-CCCcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc------ccccccCCEEECC
Confidence 888888887 44444 4566777777766543 4445555555444333 2455666666666
Q ss_pred ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCcccc
Q 048829 854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYF 919 (976)
Q Consensus 854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i 919 (976)
+ +...+.+|......+. ..+...++|+.|++++ +.++.++ +..+++|+.|++++ ++++.+
T Consensus 295 ~-n~~l~~l~~~~~~L~~-L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l~~l 354 (457)
T 3bz5_A 295 H-NTQLYLLDCQAAGITE-LDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHIQDF 354 (457)
T ss_dssp T-CTTCCEEECTTCCCSC-CCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCCCBC
T ss_pred C-CcccceeccCCCcceE-echhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCCCCc
Confidence 6 3444444432211111 1134556777777777 5666663 66777777777777 444444
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.5e-23 Score=235.87 Aligned_cols=305 Identities=18% Similarity=0.130 Sum_probs=230.0
Q ss_pred CcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCccc
Q 048829 546 GLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYI 623 (976)
Q Consensus 546 ~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~ 623 (976)
.++.+|..+ .++++.|++++ +.++.++. ...+++|++|++++|. ++.++...+ ..+++|++|++++|. ++.+
T Consensus 22 ~l~~ip~~~--~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~ 95 (477)
T 2id5_A 22 RFVAVPEGI--PTETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAF-NNLFNLRTLGLRSNR-LKLI 95 (477)
T ss_dssp CCSSCCSCC--CTTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCSC
T ss_pred CcCcCCCCC--CCCCcEEECCC-CccceECHhHccCCCCCCEEECCCCc-cCEeChhhh-hCCccCCEEECCCCc-CCcc
Confidence 445566544 35788888888 56666643 3447788888888886 555543333 477888888888764 4445
Q ss_pred ccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCc
Q 048829 624 AEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSV 701 (976)
Q Consensus 624 ~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 701 (976)
+.. ..+++|++|++++|...... +..+. .+ ++|
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~------------------------------------------~l-~~L 130 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILL--DYMFQ------------------------------------------DL-YNL 130 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEEC--TTTTT------------------------------------------TC-TTC
T ss_pred CcccccCCCCCCEEECCCCccccCC--hhHcc------------------------------------------cc-ccC
Confidence 433 34567777777777432211 11111 11 789
Q ss_pred eEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCC
Q 048829 702 KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDC 781 (976)
Q Consensus 702 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c 781 (976)
++|++++|.+.+..+..+.++++|++|++++|......+..+.++++|+.|++++|......+..+..+++|+.|++++|
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 99999999998888889999999999999997554444567889999999999999554444456778999999999999
Q ss_pred cCcccCCCcCCCCCccceEEEeCCCCCCccc--CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCC
Q 048829 782 KRLEALPKGLHNLTSLQQLTIIGGELPSLEE--DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDM 859 (976)
Q Consensus 782 ~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 859 (976)
..++.+|.......+|++|++++|.+..++. ...+++|+.|++++|.+..... ..+.++++|+.|++++ +...
T Consensus 211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~-n~l~ 285 (477)
T 2id5_A 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVG-GQLA 285 (477)
T ss_dssp TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCS-SCCS
T ss_pred ccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCC-Cccc
Confidence 9999998888777899999999999998874 3567899999999999876655 5688999999999999 3333
Q ss_pred ccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCc
Q 048829 860 VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKL 916 (976)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l 916 (976)
...|..+ ..+++|+.|++++ +.++.++. .+..+++|++|++++|+..
T Consensus 286 ~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 286 VVEPYAF---------RGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp EECTTTB---------TTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred eECHHHh---------cCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 3334433 6889999999999 58888876 5688999999999997643
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3.1e-23 Score=231.11 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=160.9
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|.+.+..+..+..+++|++|++++|. ++.++ +..+++|+.|++++| .++.++ ..++|++|++
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L~l~~n-~l~~~~----~~~~L~~L~l 212 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDA 212 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEEECCSS-CCSEEE----CCSSCSEEEC
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccceeecccc-cccccC----CCCcceEEEC
Confidence 567777777777776667778888888888888854 33332 456788888888887 444443 2247888888
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCC
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD 858 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~ 858 (976)
++|. +..+|.. ..++|+.|++++|.+...+....+++|++|++++|.+....+ ..+.++++|++|++++ +.
T Consensus 213 ~~n~-l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~--n~ 283 (390)
T 3o6n_A 213 SHNS-INVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISN--NR 283 (390)
T ss_dssp CSSC-CCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCS--SC
T ss_pred CCCe-eeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCC--Cc
Confidence 8887 4555543 357888888888888887666677889999999998877655 5688899999999998 35
Q ss_pred CccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCCcc
Q 048829 859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCPL 938 (976)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~~ 938 (976)
+..++... ..+++|+.|++++ +.++.+|..+..+++|++|++++|+ ++.++.. ..++|++|++++|+-
T Consensus 284 l~~~~~~~---------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 284 LVALNLYG---------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS-IVTLKLS-THHTLKNLTLSHNDW 351 (390)
T ss_dssp CCEEECSS---------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCC-TTCCCSEEECCSSCE
T ss_pred CcccCccc---------CCCCCCCEEECCC-CcceecCccccccCcCCEEECCCCc-cceeCch-hhccCCEEEcCCCCc
Confidence 66666554 4789999999999 5888999888889999999999954 6777643 346899999999863
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.4e-22 Score=225.76 Aligned_cols=292 Identities=16% Similarity=0.186 Sum_probs=216.4
Q ss_pred cccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCC
Q 048829 495 GLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSF 574 (976)
Q Consensus 495 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l 574 (976)
..+..+++|+.|+++++. ++.++... +..+ ++|++|++++|......|..+..+++|++|++++ +.++.+
T Consensus 63 ~~~~~l~~L~~L~L~~n~-i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l 132 (390)
T 3o6n_A 63 ALLDSFRQVELLNLNDLQ-IEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSL 132 (390)
T ss_dssp HHHHHCCCCSEEECTTSC-CCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred hHhcccccCcEEECCCCc-ccccChhh----ccCC----CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC-CccCcC
Confidence 346778888888888864 44443321 2222 7889999998887766677788899999999998 577777
Q ss_pred CCc--CCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEeeccCcCcccccccccc
Q 048829 575 PEV--ALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGI 652 (976)
Q Consensus 575 ~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 652 (976)
|.. ..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++ ...+++|+.|++++|. ++.+..+
T Consensus 133 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~l~~L~~L~l~~n~-l~~~~~~--- 204 (390)
T 3o6n_A 133 PRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL-LSTLAIP--- 204 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC-GGGCTTCSEEECCSSC-CSEEECC---
T ss_pred CHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCccc-cccccccceeeccccc-ccccCCC---
Confidence 763 448889999999987 666655444 578899999998875 33333 2445678999988874 3333111
Q ss_pred ccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeec
Q 048829 653 QSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISN 732 (976)
Q Consensus 653 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 732 (976)
+.|+.|+++++.--. ++. ..+++|+.|++++|.+.+. ..+..+++|++|++++
T Consensus 205 ----------~~L~~L~l~~n~l~~--~~~-------------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 205 ----------IAVEELDASHNSINV--VRG-------------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp ----------SSCSEEECCSSCCCE--EEC-------------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred ----------CcceEEECCCCeeee--ccc-------------cccccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence 458888888764321 111 2237899999999987764 5688899999999999
Q ss_pred CCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCccc
Q 048829 733 CENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE 812 (976)
Q Consensus 733 c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 812 (976)
|......|..+..+++|++|++++| .++.+|..+..+++|++|++++|. +..+|..+..+++|++|++++|.+..++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~~~- 334 (390)
T 3o6n_A 258 NELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK- 334 (390)
T ss_dssp SCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred CcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccceeC-
Confidence 7666666888888999999999998 567777777788899999999997 6678878888899999999999988876
Q ss_pred CCCCCccceeeecCCCCccchh
Q 048829 813 DGLPTNLHSLRIEGNMGIWKSM 834 (976)
Q Consensus 813 ~~~~~~L~~L~l~~~~~~~~~~ 834 (976)
...+++|+.|++++|+......
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHHHH
T ss_pred chhhccCCEEEcCCCCccchhH
Confidence 4556788888888888766544
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-22 Score=238.10 Aligned_cols=210 Identities=14% Similarity=0.102 Sum_probs=146.0
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|.+.+..|..+..+++|++|++++|. ++.++ +..+++|+.|++++| .+..++ ..++|+.|++
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~l~~n-~l~~l~----~~~~L~~L~l 218 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDA 218 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEECCSS-CCSEEE----CCTTCSEEEC
T ss_pred CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhhcccC-cccccc----CCchhheeec
Confidence 566777777776666666677777777777777753 33332 445677777777777 344332 2346777888
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCC
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD 858 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~ 858 (976)
++|. +..+|..+ .++|+.|++++|.+...+....+++|+.|++++|.+....+ ..+.++++|+.|++++ +.
T Consensus 219 s~n~-l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~--N~ 289 (597)
T 3oja_B 219 SHNS-INVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISN--NR 289 (597)
T ss_dssp CSSC-CCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECTT--SC
T ss_pred cCCc-cccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH----HHhcCccCCCEEECCC--CC
Confidence 7776 44444333 35778888888777776655667788888888887776655 4577888888888888 35
Q ss_pred CccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCCc
Q 048829 859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCP 937 (976)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~ 937 (976)
+..+|... ..+++|+.|++++ +.+..+|..+..+++|++|++++|+ ++.++... .++|+.|++++|+
T Consensus 290 l~~l~~~~---------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~L~~L~l~~N~ 356 (597)
T 3oja_B 290 LVALNLYG---------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS-IVTLKLST-HHTLKNLTLSHND 356 (597)
T ss_dssp CCEEECSS---------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT-TCCCSEEECCSSC
T ss_pred CCCCCccc---------ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCCC-CCCcChhh-cCCCCEEEeeCCC
Confidence 55566554 4678888888888 5677888888888888888888854 56665433 3588888888876
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=6.8e-22 Score=232.56 Aligned_cols=292 Identities=17% Similarity=0.191 Sum_probs=221.9
Q ss_pred cccccCCCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCC
Q 048829 495 GLLQDICSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSF 574 (976)
Q Consensus 495 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l 574 (976)
..+..+++|+.|++++|. +..++... +..+ ++|+.|++++|......|..+..+++|++|++++ +.++.+
T Consensus 69 ~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l 138 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQ-IEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSL 138 (597)
T ss_dssp HHHHHCCCCSEEECTTSC-CCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred HHHccCCCCcEEECCCCC-CCCCChHH----hcCC----CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC-CCCCCC
Confidence 456778888888888864 55444321 2222 7899999999887776666778899999999998 577777
Q ss_pred CCc--CCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEeeccCcCcccccccccc
Q 048829 575 PEV--ALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGI 652 (976)
Q Consensus 575 ~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 652 (976)
|.. ..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++ ...+++|+.|++++|. ++.+..+
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~l~~L~~L~l~~n~-l~~l~~~--- 210 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYNL-LSTLAIP--- 210 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCC-GGGCTTCSEEECCSSC-CSEEECC---
T ss_pred CHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcC-hhhhhhhhhhhcccCc-cccccCC---
Confidence 763 458899999999987 566655444 578899999998874 34443 2445679999998874 3333111
Q ss_pred ccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeec
Q 048829 653 QSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISN 732 (976)
Q Consensus 653 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 732 (976)
+.|+.|+++++.-- . + ....+++|+.|++++|.+.+ +..+..+++|++|++++
T Consensus 211 ----------~~L~~L~ls~n~l~-~-~-------------~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 211 ----------IAVEELDASHNSIN-V-V-------------RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp ----------TTCSEEECCSSCCC-E-E-------------ECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred ----------chhheeeccCCccc-c-c-------------ccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCC
Confidence 45888888886422 1 1 11234789999999998876 36788999999999999
Q ss_pred CCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCccc
Q 048829 733 CENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEE 812 (976)
Q Consensus 733 c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 812 (976)
|...+..|..+..+++|++|++++| .++.+|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.+..++
T Consensus 264 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~~~~- 340 (597)
T 3oja_B 264 NELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK- 340 (597)
T ss_dssp SCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred CccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCCCCcC-
Confidence 8776677888999999999999998 667788877788999999999998 5678888889999999999999998876
Q ss_pred CCCCCccceeeecCCCCccchh
Q 048829 813 DGLPTNLHSLRIEGNMGIWKSM 834 (976)
Q Consensus 813 ~~~~~~L~~L~l~~~~~~~~~~ 834 (976)
...+++|+.|++++|+......
T Consensus 341 ~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CCTTCCCSEEECCSSCEEHHHH
T ss_pred hhhcCCCCEEEeeCCCCCChhH
Confidence 4556789999999998776544
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.1e-21 Score=210.93 Aligned_cols=292 Identities=12% Similarity=0.119 Sum_probs=186.6
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEe
Q 048829 558 SSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLD 636 (976)
Q Consensus 558 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~ 636 (976)
.+++.+++++ +.++.+|.. .+++|++|++++|. ++.++...+ ..+++|++|++++|......+.. ..+++|++|+
T Consensus 33 c~l~~l~~~~-~~l~~ip~~-~~~~l~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSD-LGLKAVPKE-ISPDTTLLDLQNND-ISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCS-SCCSSCCSC-CCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCC-CCccccCCC-CCCCCeEEECCCCc-CCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 3688888887 567777743 35788888888887 666654444 57888888888887533222322 4456677777
Q ss_pred eccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh
Q 048829 637 IQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA 716 (976)
Q Consensus 637 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 716 (976)
+++|. ++.+ |.. ++++|++|++++|.+.+..+
T Consensus 109 L~~n~-l~~l--~~~---------------------------------------------~~~~L~~L~l~~n~i~~~~~ 140 (332)
T 2ft3_A 109 ISKNH-LVEI--PPN---------------------------------------------LPSSLVELRIHDNRIRKVPK 140 (332)
T ss_dssp CCSSC-CCSC--CSS---------------------------------------------CCTTCCEEECCSSCCCCCCS
T ss_pred CCCCc-CCcc--Ccc---------------------------------------------ccccCCEEECCCCccCccCH
Confidence 77763 2222 111 11578888888888776666
Q ss_pred hhhcCCCCCceEEeecCCCcc--cccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCC
Q 048829 717 ERLDNNTSLETINISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNL 794 (976)
Q Consensus 717 ~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l 794 (976)
..+..+++|++|++++|.... ..|..+..+ +|++|++++| .++.+|.... ++|++|++++|......+..+..+
T Consensus 141 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCC
Confidence 678888888888888865532 446666666 8888888888 4666776544 688888888887555555678888
Q ss_pred CccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccC
Q 048829 795 TSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLG 872 (976)
Q Consensus 795 ~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 872 (976)
++|++|++++|.+..++.. ..+++|++|++++|.+... + ..+..+++|++|++++ +.+..++...... .
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p----~~l~~l~~L~~L~l~~--N~l~~~~~~~~~~--~ 287 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-P----AGLPDLKLLQVVYLHT--NNITKVGVNDFCP--V 287 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-C----TTGGGCTTCCEEECCS--SCCCBCCTTSSSC--S
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-C----hhhhcCccCCEEECCC--CCCCccChhHccc--c
Confidence 8888888888888877653 3456777777777766532 2 3466777777777777 3455554432100 0
Q ss_pred CCCCCccccceeeccccCCC--ccccccccCCCCCCeEeecCCC
Q 048829 873 TTLPLPASLTSLSIAFFPNL--ESLSSSIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 873 ~~~~~l~~L~~L~l~~~~~l--~~l~~~l~~l~~L~~L~l~~c~ 914 (976)
......++|+.|++++++.. +..|..+..+++|+.+++++|.
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 00011456677777775432 2233456667777777776654
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=5.5e-21 Score=207.51 Aligned_cols=292 Identities=13% Similarity=0.177 Sum_probs=192.7
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc-cCCCCCcEEe
Q 048829 558 SSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV-QLPLSLKRLD 636 (976)
Q Consensus 558 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~ 636 (976)
.+++.+++++ ..++.+|. ..++++++|++++|. ++.++...+ ..+++|++|++++|......+.. ..+++|++|+
T Consensus 31 c~l~~l~~~~-~~l~~lp~-~~~~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSD-LGLEKVPK-DLPPDTALLDLQNNK-ITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTT-SCCCSCCC-SCCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecC-CCccccCc-cCCCCCeEEECCCCc-CCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 4678888877 56777764 345788888888887 666665444 57888888888887543332322 4556777777
Q ss_pred eccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh
Q 048829 637 IQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA 716 (976)
Q Consensus 637 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 716 (976)
+++|. ++.+ |.. ++++|++|++++|.+.+..+
T Consensus 107 Ls~n~-l~~l--~~~---------------------------------------------~~~~L~~L~l~~n~l~~~~~ 138 (330)
T 1xku_A 107 LSKNQ-LKEL--PEK---------------------------------------------MPKTLQELRVHENEITKVRK 138 (330)
T ss_dssp CCSSC-CSBC--CSS---------------------------------------------CCTTCCEEECCSSCCCBBCH
T ss_pred CCCCc-CCcc--Chh---------------------------------------------hcccccEEECCCCcccccCH
Confidence 77764 2222 111 11678999999998888888
Q ss_pred hhhcCCCCCceEEeecCCCcc--cccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCC
Q 048829 717 ERLDNNTSLETINISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNL 794 (976)
Q Consensus 717 ~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l 794 (976)
..+.++++|++|++++|.... ..+..+.++++|++|++++| .++.+|.... ++|++|++++|......|..+..+
T Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTC
T ss_pred hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCC
Confidence 889999999999999976543 45778888999999999999 5667776554 799999999998655557788999
Q ss_pred CccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccC
Q 048829 795 TSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLG 872 (976)
Q Consensus 795 ~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 872 (976)
++|++|++++|.+..++.. ..+++|++|++++|.+... + ..+..+++|++|++++ +.+..++...... .
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p----~~l~~l~~L~~L~l~~--N~i~~~~~~~f~~--~ 286 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-P----GGLADHKYIQVVYLHN--NNISAIGSNDFCP--P 286 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-C----TTTTTCSSCCEEECCS--SCCCCCCTTSSSC--S
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-C----hhhccCCCcCEEECCC--CcCCccChhhcCC--c
Confidence 9999999999988877653 2346677777777765522 2 2456667777777776 2444444432100 0
Q ss_pred CCCCCccccceeeccccCCCc-cc-cccccCCCCCCeEeecCC
Q 048829 873 TTLPLPASLTSLSIAFFPNLE-SL-SSSIVDLQNLTKLTLYDC 913 (976)
Q Consensus 873 ~~~~~l~~L~~L~l~~~~~l~-~l-~~~l~~l~~L~~L~l~~c 913 (976)
......++|+.|++++++... .+ |..+..+++|+.+++++|
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 000123556666666643211 12 235555566666666553
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=6.6e-21 Score=206.84 Aligned_cols=265 Identities=14% Similarity=0.142 Sum_probs=151.0
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI 611 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 611 (976)
++|+.|++++|......+..+..+++|++|++++ +.++.+.. ...+++|++|++++|. ++.+|... .++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM----PKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC----CTTCCE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh----cccccE
Confidence 6777777777765554454677777777777777 45555522 3446777777777776 66666543 256777
Q ss_pred EEEecCCCCcccccc--cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccc
Q 048829 612 LKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATL 689 (976)
Q Consensus 612 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 689 (976)
|++++|.. +.++.. ..+++|+.|++++|..-..-..+..+..+
T Consensus 126 L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---------------------------------- 170 (330)
T 1xku_A 126 LRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM---------------------------------- 170 (330)
T ss_dssp EECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC----------------------------------
T ss_pred EECCCCcc-cccCHhHhcCCccccEEECCCCcCCccCcChhhccCC----------------------------------
Confidence 77777643 333321 44556777777666432110001111111
Q ss_pred ccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCC
Q 048829 690 ESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLP 769 (976)
Q Consensus 690 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 769 (976)
++|++|++++|.+.. +|..+. ++|++|++++|......|..+..+++|++|++++|......+..+..
T Consensus 171 ---------~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 171 ---------KKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp ---------TTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred ---------CCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 456666666655443 332222 56667777665444334566666777777777776433322334555
Q ss_pred CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC--------CCccceeeecCCCCccchhhhcCCcc
Q 048829 770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL--------PTNLHSLRIEGNMGIWKSMIERGRGF 841 (976)
Q Consensus 770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~~ 841 (976)
+++|++|++++|. +..+|..+..+++|++|++++|.|+.++...+ ...++.+++++|+........ ..+
T Consensus 239 l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f 315 (330)
T 1xku_A 239 TPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STF 315 (330)
T ss_dssp STTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGG
T ss_pred CCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc--ccc
Confidence 6677777777775 45666667777777777777777776655433 245666666666654422221 345
Q ss_pred cccCcccEEEEec
Q 048829 842 HRFSSLRYLLIRG 854 (976)
Q Consensus 842 ~~l~~L~~L~l~~ 854 (976)
..+++++.+++++
T Consensus 316 ~~~~~l~~l~L~~ 328 (330)
T 1xku_A 316 RCVYVRAAVQLGN 328 (330)
T ss_dssp TTCCCGGGEEC--
T ss_pred ccccceeEEEecc
Confidence 5566666666655
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.8e-21 Score=208.54 Aligned_cols=197 Identities=19% Similarity=0.306 Sum_probs=127.8
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCC---------
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLP--------- 769 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--------- 769 (976)
++|++|++++|.+. .+|..++.+++|++|++++|. ++.+|..+..+++|++|++++|..++.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 56666667666665 566667777777777777753 3466777777777777777777677777665443
Q ss_pred CCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC-CCCCccceeeecCCCCccchhhhcCCcccccCccc
Q 048829 770 CAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR 848 (976)
Q Consensus 770 ~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 848 (976)
+++|++|++++|. ++.+|..++.+++|++|++++|.+..++.. +.+++|++|++++|......+ ..+.++++|+
T Consensus 182 l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCC
T ss_pred CCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH----HHhcCCCCCC
Confidence 6777777777776 447777777777777777777777766532 334566666666666555544 3456666666
Q ss_pred EEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecC
Q 048829 849 YLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYD 912 (976)
Q Consensus 849 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 912 (976)
+|++++ |+..+.+|... ..+++|+.|++++|+.++.+|.++..+++|+.+++..
T Consensus 257 ~L~L~~-n~~~~~~p~~~---------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 257 RLILKD-CSNLLTLPLDI---------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EEECTT-CTTCCBCCTTG---------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EEECCC-CCchhhcchhh---------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 666666 34555555544 3566666666666666666666666666666666654
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=5.7e-22 Score=212.67 Aligned_cols=225 Identities=13% Similarity=0.082 Sum_probs=173.9
Q ss_pred CCceEEEEcC-CCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829 699 PSVKVLDVYG-CPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (976)
++|++|++++ |.+.+.+|..++.+++|++|++++|...+.+|..+..+++|++|++++|...+.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 6788888885 777778888888888888888888766667788888888888888888865557777777788888888
Q ss_pred ecCCcCcccCCCcCCCCC-ccceEEEeCCCCCC-cccC-CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 778 IYDCKRLEALPKGLHNLT-SLQQLTIIGGELPS-LEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 778 l~~c~~l~~~~~~l~~l~-~L~~L~l~~~~l~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
+++|...+.+|..+..++ +|++|++++|.+.. ++.. ..++ |++|++++|.+....+ ..+..+++|++|++++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG----GGCCTTSCCSEEECCS
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC----HHHhcCCCCCEEECCC
Confidence 888886667888888887 88888888888773 2221 2223 8888898888776655 5688899999999998
Q ss_pred cCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeec
Q 048829 855 CDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIY 934 (976)
Q Consensus 855 c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~ 934 (976)
+...+.++. . ..+++|++|++++|..-+.+|..+..+++|++|++++|+..+.+|...-.++|+.+++.
T Consensus 231 -N~l~~~~~~-~---------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 231 -NSLAFDLGK-V---------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp -SEECCBGGG-C---------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred -CceeeecCc-c---------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 333333333 2 47799999999995444478888999999999999997766688876556789999999
Q ss_pred CCcch
Q 048829 935 RCPLI 939 (976)
Q Consensus 935 ~c~~l 939 (976)
+++.+
T Consensus 300 ~N~~l 304 (313)
T 1ogq_A 300 NNKCL 304 (313)
T ss_dssp SSSEE
T ss_pred CCCCc
Confidence 98854
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=6.7e-21 Score=205.49 Aligned_cols=227 Identities=21% Similarity=0.329 Sum_probs=170.3
Q ss_pred cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829 533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI 611 (976)
Q Consensus 533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 611 (976)
.++++.|++++|... .+|..+..+++|++|++++ +.++.+|. ...+++|++|++++|. ++.+|..+. .+++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~--~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARNP-LRALPASIA--SLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGG--GCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCCc-cccCcHHHh--cCcCCCE
Confidence 368888888887654 7777788888899999988 46667775 4557888888888887 667776554 7888888
Q ss_pred EEEecCCCCccccccc----------CCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCcccccc
Q 048829 612 LKIWDCHSLTYIAEVQ----------LPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFS 681 (976)
Q Consensus 612 L~l~~~~~l~~~~~~~----------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 681 (976)
|++++|+....+|..- .+++|++|++++|. ++.+ |..+..+
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l--p~~l~~l-------------------------- 205 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL--PASIANL-------------------------- 205 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCC--CGGGGGC--------------------------
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcc--hHhhcCC--------------------------
Confidence 8888887777666431 14556666666653 2222 3222211
Q ss_pred CCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCC
Q 048829 682 KNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLE 761 (976)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 761 (976)
++|++|++++|.+.+ +|..+..+++|++|++++|+..+.+|..+.++++|++|++++|...+
T Consensus 206 -----------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 206 -----------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp -----------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred -----------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 678888888887764 55568888888888888888888888888888888888888888888
Q ss_pred ccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcc
Q 048829 762 SFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLE 811 (976)
Q Consensus 762 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~ 811 (976)
.+|..+..+++|++|++++|+.++.+|..++++++|+.+++..+.+..+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 88888888888888888888888888888888888888888776555543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.4e-21 Score=209.71 Aligned_cols=251 Identities=15% Similarity=0.094 Sum_probs=187.4
Q ss_pred ccccEEEeeccCCcc--cCccccCCCCCccEEEeecCCCCC-CCCC-cCCCCCCcEEEEccCCCCCCCCCccccCCCCcc
Q 048829 534 CRLEYLRLRYCEGLV--KLPQSSLSLSSLKEIEIYKCSSLV-SFPE-VALPSKLKKIEIRECDALKSLPEPWMCDTSSSL 609 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~-~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 609 (976)
.+++.|++++|...+ .+|..+..+++|++|++++++.+. .+|. ...+++|++|++++|...+.+|..+. .+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCC
Confidence 478888888887777 788888888888999888645554 4553 44578888888888874446665543 77888
Q ss_pred cEEEEecCCCCcccccc-cCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccc
Q 048829 610 EILKIWDCHSLTYIAEV-QLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPAT 688 (976)
Q Consensus 610 ~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 688 (976)
++|++++|.....++.. ..+++|++|++++|...+.+ |..+.
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~----------------------------------- 170 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYG----------------------------------- 170 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGG-----------------------------------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC--CHHHh-----------------------------------
Confidence 88888887544344433 45566777777777543233 32222
Q ss_pred cccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCC
Q 048829 689 LESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGL 768 (976)
Q Consensus 689 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 768 (976)
.++++|++|++++|.+.+.+|..+..++ |++|++++|......|..+..+++|++|++++|.....+|. +.
T Consensus 171 -------~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~ 241 (313)
T 1ogq_A 171 -------SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG 241 (313)
T ss_dssp -------CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC
T ss_pred -------hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc
Confidence 2224789999999988888888888887 99999999876667788888899999999999965444544 66
Q ss_pred CCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCC-CcccCCCCCccceeeecCCCCccc
Q 048829 769 PCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELP-SLEEDGLPTNLHSLRIEGNMGIWK 832 (976)
Q Consensus 769 ~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~-~~~~~~~~~~L~~L~l~~~~~~~~ 832 (976)
.+++|++|++++|...+.+|..+..+++|++|++++|.+. .+|..+.+++|+.+++++|+....
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 6789999999999977788888999999999999998887 566666678888888888875543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.3e-20 Score=202.61 Aligned_cols=218 Identities=16% Similarity=0.195 Sum_probs=131.8
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 777 (976)
++|++|++++|.+.+..|..+.++++|++|++++| .++.+|..+. ++|++|++++| .++.+|. .+..+++|++|+
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEE
T ss_pred CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEE
Confidence 55666666666666655666666777777777664 3445554443 66777777766 3444443 245566777777
Q ss_pred ecCCcCc--ccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEecc
Q 048829 778 IYDCKRL--EALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGC 855 (976)
Q Consensus 778 l~~c~~l--~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 855 (976)
+++|... +..|..+..+ +|++|++++|.+..++.. .+++|++|++++|.+....+ ..+.++++|++|++++
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~L~~- 226 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHNKIQAIEL----EDLLRYSKLYRLGLGH- 226 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSSCCCCCCT----TSSTTCTTCSCCBCCS-
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCCcCCccCH----HHhcCCCCCCEEECCC-
Confidence 7776642 2344555555 677777777666666543 33667777777776665544 3466677777777776
Q ss_pred CCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCC--------ccc
Q 048829 856 DDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGL--------PSS 927 (976)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~--------~~~ 927 (976)
+.+..++... +..+++|+.|++++ +.++.+|.++..+++|++|++++ +.++.++...+ .++
T Consensus 227 -N~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 227 -NQIRMIENGS--------LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp -SCCCCCCTTG--------GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCC
T ss_pred -CcCCcCChhH--------hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhHcccccccccccc
Confidence 2344444322 24566777777776 46667776666777777777776 34566654332 234
Q ss_pred ccceeecCCcc
Q 048829 928 LLQLRIYRCPL 938 (976)
Q Consensus 928 L~~L~i~~c~~ 938 (976)
|+.|++.+||.
T Consensus 296 l~~L~l~~N~~ 306 (332)
T 2ft3_A 296 YNGISLFNNPV 306 (332)
T ss_dssp BSEEECCSSSS
T ss_pred ccceEeecCcc
Confidence 66677777663
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=5e-22 Score=235.11 Aligned_cols=206 Identities=12% Similarity=0.057 Sum_probs=125.7
Q ss_pred CCceEEEEcCCCcchhhh-hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccC----------CCCCCc--cCC
Q 048829 699 PSVKVLDVYGCPKLESIA-ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGG----------CGNLES--FPE 765 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~----------~~~l~~--~~~ 765 (976)
++|++|++++|.+.+... ..+..+++|++|+++++.....++.....+++|++|++++ |..++. ++.
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 577888888877544433 4467788888888875433333455556678888888884 544442 111
Q ss_pred CCCCCCCccEEEecCCcCcccCCCcCCC-CCccceEEEe----CCCCCCcccC-------CCCCccceeeecCCC--Ccc
Q 048829 766 GGLPCAKLRRLEIYDCKRLEALPKGLHN-LTSLQQLTII----GGELPSLEED-------GLPTNLHSLRIEGNM--GIW 831 (976)
Q Consensus 766 ~~~~~~~L~~L~l~~c~~l~~~~~~l~~-l~~L~~L~l~----~~~l~~~~~~-------~~~~~L~~L~l~~~~--~~~ 831 (976)
....+++|++|+++.+......+..+.. +++|+.|+++ .|.++..|.. ..+++|+.|++++|. ...
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 1233678888888555533333334433 7788888886 3566654321 226788888887655 232
Q ss_pred chhhhcCCcccccCcccEEEEeccCCCCc-cCCCCCcccccCCCCCCccccceeeccccCCCcc--ccccccCCCCCCeE
Q 048829 832 KSMIERGRGFHRFSSLRYLLIRGCDDDMV-SFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES--LSSSIVDLQNLTKL 908 (976)
Q Consensus 832 ~~~~~~~~~~~~l~~L~~L~l~~c~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~L 908 (976)
..+. .....+++|++|++++| .... .++.. +..+++|+.|++++|+ ++. ++..+..+++|++|
T Consensus 453 ~~~~---~~~~~~~~L~~L~L~~n-~l~~~~~~~~---------~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 453 LGLS---YIGQYSPNVRWMLLGYV-GESDEGLMEF---------SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp HHHH---HHHHSCTTCCEEEECSC-CSSHHHHHHH---------HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred HHHH---HHHHhCccceEeeccCC-CCCHHHHHHH---------HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 2221 22345788999999884 2111 12211 1356889999999976 433 44455678899999
Q ss_pred eecCCCCcccc
Q 048829 909 TLYDCPKLKYF 919 (976)
Q Consensus 909 ~l~~c~~l~~i 919 (976)
++++|+ ++..
T Consensus 519 ~ls~n~-it~~ 528 (592)
T 3ogk_B 519 WVQGYR-ASMT 528 (592)
T ss_dssp EEESCB-CCTT
T ss_pred ECcCCc-CCHH
Confidence 999987 5544
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=6.7e-22 Score=234.01 Aligned_cols=109 Identities=16% Similarity=0.086 Sum_probs=53.8
Q ss_pred CCceEEEEcCCCcchhhhhhhcC-CCCCceEEeec---CCCcccc------cccccCCCCCcEEEccCCCC-CCc--cCC
Q 048829 699 PSVKVLDVYGCPKLESIAERLDN-NTSLETINISN---CENLKIL------SSGLHNLCQLQQIGIGGCGN-LES--FPE 765 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~-l~~L~~L~l~~---c~~l~~l------p~~~~~l~~L~~L~l~~~~~-l~~--~~~ 765 (976)
++|++|+++.+.+.+..+..+.. +++|++|++++ |+.++.. +..+.++++|++|++++|.. ++. +..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 56666666666665555555544 66677777663 3444432 22344466666666655432 110 000
Q ss_pred CCCCCCCccEEEecCCcCcc-cCCCcCCCCCccceEEEeCCCC
Q 048829 766 GGLPCAKLRRLEIYDCKRLE-ALPKGLHNLTSLQQLTIIGGEL 807 (976)
Q Consensus 766 ~~~~~~~L~~L~l~~c~~l~-~~~~~l~~l~~L~~L~l~~~~l 807 (976)
....+++|++|++++|.... .++..+..+++|++|++++|.+
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 01124556666666655322 1223334455555555555444
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=7.3e-23 Score=234.20 Aligned_cols=371 Identities=20% Similarity=0.190 Sum_probs=222.6
Q ss_pred CCCCeEEEcCCCCcccchhhhhHHHHHHhhhccccccEEEeeccCCcc----cCccccCCCCCccEEEeecCCCCCCCCC
Q 048829 501 CSLKSLEIRGCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLRYCEGLV----KLPQSSLSLSSLKEIEIYKCSSLVSFPE 576 (976)
Q Consensus 501 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 576 (976)
++|++|+++++. +...... ..+..+ ++|+.|++++|.... .++..+..+++|++|++++| .++....
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~---~~~~~~----~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~ 73 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWA---ELLPLL----QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGV 73 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHH---HHHHHH----TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHH
T ss_pred ccceehhhhhcc-cCchhHH---HHHhhc----CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHH
Confidence 567778887653 3332211 112233 788888888877543 34555667788888888874 4433111
Q ss_pred ---cCCCC----CCcEEEEccCCCCCC-----CCCccccCCCCcccEEEEecCCCCccc-----ccc--cCCCCCcEEee
Q 048829 577 ---VALPS----KLKKIEIRECDALKS-----LPEPWMCDTSSSLEILKIWDCHSLTYI-----AEV--QLPLSLKRLDI 637 (976)
Q Consensus 577 ---~~~~~----~L~~L~l~~~~~l~~-----l~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~--~~~~~L~~L~l 637 (976)
...++ +|++|++++|. ++. ++..+ ..+++|++|++++|. ++.. ... ...++|++|++
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTL--RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHT--TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHH--ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEEC
Confidence 11122 57778887776 442 22222 356677777777765 2211 111 11234666666
Q ss_pred ccCcCcccc--ccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhh
Q 048829 638 QRCNKIRTL--TVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESI 715 (976)
Q Consensus 638 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 715 (976)
++|..-... ..+..+ ..+ ++|++|++++|.+.+..
T Consensus 150 ~~n~l~~~~~~~l~~~l------------------------------------------~~~-~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVL------------------------------------------RAK-PDFKELTVSNNDINEAG 186 (461)
T ss_dssp TTSCCBGGGHHHHHHHH------------------------------------------HHC-TTCCEEECCSSBCHHHH
T ss_pred CCCCCCHHHHHHHHHHH------------------------------------------hhC-CCCCEEECcCCCcchHH
Confidence 666321100 000000 011 67888888888876654
Q ss_pred hhhhc-----CCCCCceEEeecCCCccc----ccccccCCCCCcEEEccCCCCCCcc------CCCCCCCCCccEEEecC
Q 048829 716 AERLD-----NNTSLETINISNCENLKI----LSSGLHNLCQLQQIGIGGCGNLESF------PEGGLPCAKLRRLEIYD 780 (976)
Q Consensus 716 ~~~~~-----~l~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~~~~l~~~------~~~~~~~~~L~~L~l~~ 780 (976)
+..+. ..++|++|++++|..... ++..+..+++|++|++++|. ++.. +.....+++|++|++++
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcC
Confidence 44433 366888999988754432 46677778889999998884 3322 11223467899999999
Q ss_pred CcCccc----CCCcCCCCCccceEEEeCCCCCCcccC-------CCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829 781 CKRLEA----LPKGLHNLTSLQQLTIIGGELPSLEED-------GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY 849 (976)
Q Consensus 781 c~~l~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 849 (976)
|..... ++..+..+++|++|++++|.+...... ...++|++|++++|.+........+..+..+++|++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 863332 566677788999999999887643221 123689999999998776533222245677899999
Q ss_pred EEEeccCCCCccC-CCCCcccccCCCCC-CccccceeeccccCCCc-----cccccccCCCCCCeEeecCCCCccccCC-
Q 048829 850 LLIRGCDDDMVSF-PPEPEDRRLGTTLP-LPASLTSLSIAFFPNLE-----SLSSSIVDLQNLTKLTLYDCPKLKYFPE- 921 (976)
Q Consensus 850 L~l~~c~~~~~~~-~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~-----~l~~~l~~l~~L~~L~l~~c~~l~~i~~- 921 (976)
|++++| .+... +.... .++. ..++|++|++++| .++ .+|..+..+++|++|++++|+ ++....
T Consensus 346 L~Ls~n--~i~~~~~~~l~-----~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~ 416 (461)
T 1z7x_W 346 LQISNN--RLEDAGVRELC-----QGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGIL 416 (461)
T ss_dssp EECCSS--BCHHHHHHHHH-----HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHH
T ss_pred EEccCC--ccccccHHHHH-----HHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHH
Confidence 999993 33221 11110 0011 2579999999996 566 688888889999999999975 443211
Q ss_pred ---CCC---cccccceeecCCc
Q 048829 922 ---KGL---PSSLLQLRIYRCP 937 (976)
Q Consensus 922 ---~~~---~~~L~~L~i~~c~ 937 (976)
..+ ...|+.|++.++.
T Consensus 417 ~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 417 QLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHhccCCcchhheeecccc
Confidence 011 2367777776653
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=9.6e-19 Score=202.91 Aligned_cols=215 Identities=27% Similarity=0.338 Sum_probs=127.1
Q ss_pred ccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEE
Q 048829 534 CRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILK 613 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 613 (976)
.+++.|++++|.. +.+|..+. ++|++|++++ +.++.+|. .+++|++|++++|. ++.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~-N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPD-NNLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECS-CCCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecC-CCCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 4688899888665 46776554 7899999988 56777776 67888999998887 777775 467888888
Q ss_pred EecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccccc
Q 048829 614 IWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLE 693 (976)
Q Consensus 614 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 693 (976)
+++|. ++.++. .+++|+.|++++|. ++.+ |..
T Consensus 108 Ls~N~-l~~l~~--~l~~L~~L~L~~N~-l~~l--p~~------------------------------------------ 139 (622)
T 3g06_A 108 IFSNP-LTHLPA--LPSGLCKLWIFGNQ-LTSL--PVL------------------------------------------ 139 (622)
T ss_dssp ECSCC-CCCCCC--CCTTCCEEECCSSC-CSCC--CCC------------------------------------------
T ss_pred CcCCc-CCCCCC--CCCCcCEEECCCCC-CCcC--CCC------------------------------------------
Confidence 88763 444443 45567777777663 2222 110
Q ss_pred ccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCc
Q 048829 694 VGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKL 773 (976)
Q Consensus 694 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L 773 (976)
+++|++|++++|.+.+ +|. .+++|+.|++++| .++.+| ..+++|+.|++++| .++.+|.. .++|
T Consensus 140 ----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L 203 (622)
T 3g06_A 140 ----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDN-QLASLPTL---PSEL 203 (622)
T ss_dssp ----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTC
T ss_pred ----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCC-CCCCCCCc---cchh
Confidence 1455555555554432 221 2345666666653 344444 23456666666665 34444432 2456
Q ss_pred cEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCc
Q 048829 774 RRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGI 830 (976)
Q Consensus 774 ~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 830 (976)
+.|++++|. +..+|.. +++|+.|++++|.|+.++ ..+++|+.|++++|.+.
T Consensus 204 ~~L~L~~N~-l~~l~~~---~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 204 YKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLT 254 (622)
T ss_dssp CEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCS
T ss_pred hEEECcCCc-ccccCCC---CCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCC
Confidence 666666655 4444432 355666666666555554 33455555555555443
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=9.1e-19 Score=197.97 Aligned_cols=199 Identities=19% Similarity=0.243 Sum_probs=137.2
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRL 776 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 776 (976)
++|++|+|++|.+.+..+..+.++++|++|++++| .++.+ +..+..+++|++|++++|. ++.++. .+..+++|++|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEe
Confidence 56777777777766666667777777777777775 34444 3456777777777777774 444443 45567777777
Q ss_pred EecCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEecc
Q 048829 777 EIYDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGC 855 (976)
Q Consensus 777 ~l~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 855 (976)
++++|..++.++. .+..+++|++|++++|.++.++....+++|+.|++++|.+....+ ..+.++++|+.|++++
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~- 240 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQ- 240 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTT-
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCC-
Confidence 7777766666665 567777777777777777777766667777888887777666544 4577778888888877
Q ss_pred CCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829 856 DDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~ 914 (976)
+.+..++... |..+++|+.|+|++ +.++.+|. .+..+++|+.|++++|+
T Consensus 241 -n~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 241 -SQIQVIERNA--------FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -CCCCEECTTS--------STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -CceeEEChhh--------hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 2444444332 35677888888887 56767765 45667788888877765
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=9.3e-19 Score=198.66 Aligned_cols=200 Identities=23% Similarity=0.236 Sum_probs=143.6
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 777 (976)
++|++|+|++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|. ++.+|. .+..+++|++|+
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEe
Confidence 567777777777776667777778888888888864333334457778888888888874 445544 456677888888
Q ss_pred ecCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829 778 IYDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD 856 (976)
Q Consensus 778 l~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 856 (976)
+++|..++.++. .+..+++|++|++++|.+..++....+++|+.|++++|.+....+ ..+.++++|+.|++++ +
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~-n 252 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMN-S 252 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTT-S
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCC-C
Confidence 888777777765 467788888888888888877776777788888888888776655 4577888888888887 2
Q ss_pred CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829 857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~ 914 (976)
.+..++... |..+++|+.|++++ +.++.+|. .+..+++|+.|++++|+
T Consensus 253 -~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 253 -QVSLIERNA--------FDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -CCCEECTTT--------TTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -cCceECHHH--------hcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 344443322 35778888888888 57777765 45678888888888765
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=195.94 Aligned_cols=205 Identities=17% Similarity=0.091 Sum_probs=96.8
Q ss_pred CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccc--cccCCCCCcEEEccCCCCCCccC-CCCCCCCCccEE
Q 048829 700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSS--GLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRL 776 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L 776 (976)
+|++|++++|.+.+..+..+..+++|++|++++| .++.+|. .+..+++|++|++++|..++.++ ..+..+++|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 4444444444444333333455555555555553 2333332 34445555555555554343332 233445555555
Q ss_pred EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
++++|...+..|..+..+++|++|++++|.+..++.. ..+++|+.|++++|.+....+... ......+.++.+++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-STGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEES
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc-ccccccchhhcccccc
Confidence 5555554343444555555555555555555444332 124455555555555443322110 0112344555555555
Q ss_pred cCCCC----ccCCCCCcccccCCCCCCccccceeeccccCCCcccccc-ccCCCCCCeEeecCCCCcc
Q 048829 855 CDDDM----VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSS-IVDLQNLTKLTLYDCPKLK 917 (976)
Q Consensus 855 c~~~~----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l~ 917 (976)
+ ... ..+|... ..+++|+.|++++ +.++.+|.. +..+++|++|++++|+...
T Consensus 259 ~-~l~~~~l~~l~~~l---------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 259 V-KITDESLFQVMKLL---------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp C-BCCHHHHHHHHHHH---------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred c-cccCcchhhhHHHH---------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 2 110 0122211 3556667777766 466666665 3667777777777765433
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=194.45 Aligned_cols=225 Identities=20% Similarity=0.159 Sum_probs=175.1
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCC--CCCCCCCccE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPE--GGLPCAKLRR 775 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~ 775 (976)
++|++|++++|.+.+..+..+.++++|++|++++|. ++.+| ..+.++++|++|++++| .++.+|. .+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcE
Confidence 788999999998888778889999999999999965 45554 44889999999999999 5667776 5677999999
Q ss_pred EEecCCcCcccC-CCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEE
Q 048829 776 LEIYDCKRLEAL-PKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLI 852 (976)
Q Consensus 776 L~l~~c~~l~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 852 (976)
|++++|..++.+ +..+..+++|++|++++|.+..+... ..+++|++|++++|....... ..+..+++|++|++
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L 229 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLEL 229 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEE
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhhhcccccEEEC
Confidence 999999766666 46789999999999999999887443 456899999999999754433 34567899999999
Q ss_pred eccCCCCccCCCCCcccccCCCCCCccccceeeccccC----CCccccccccCCCCCCeEeecCCCCccccCCCCC--cc
Q 048829 853 RGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFP----NLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGL--PS 926 (976)
Q Consensus 853 ~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~--~~ 926 (976)
++| .+..++.... ......+.++.++++++. .+..+|..+..+++|++|++++| +++.+|...+ .+
T Consensus 230 ~~n--~l~~~~~~~l-----~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~ 301 (353)
T 2z80_A 230 RDT--DLDTFHFSEL-----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLT 301 (353)
T ss_dssp ESC--BCTTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred CCC--cccccccccc-----ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCC
Confidence 993 4444432210 111245667777777742 22357888899999999999995 6788987643 57
Q ss_pred cccceeecCCc
Q 048829 927 SLLQLRIYRCP 937 (976)
Q Consensus 927 ~L~~L~i~~c~ 937 (976)
+|++|++++|+
T Consensus 302 ~L~~L~L~~N~ 312 (353)
T 2z80_A 302 SLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 99999999975
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=9.1e-19 Score=187.78 Aligned_cols=198 Identities=21% Similarity=0.253 Sum_probs=96.0
Q ss_pred EEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCccc---cc-ccCCCCCcEEee
Q 048829 562 EIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYI---AE-VQLPLSLKRLDI 637 (976)
Q Consensus 562 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~---~~-~~~~~~L~~L~l 637 (976)
.++.++ ..++.+|. ..+++|++|++++|. ++.++...+ ..+++|++|++++|.. +.+ +. ...+++|++|++
T Consensus 11 ~l~c~~-~~l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 11 EIRCNS-KGLTSVPT-GIPSSATRLELESNK-LQSLPHGVF-DKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEECCS-SCCSSCCS-CCCTTCCEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEEC
T ss_pred EEEcCC-CCcccCCC-CCCCCCCEEECCCCc-cCccCHhHh-hccccCCEEECCCCcc-CcccCcccccccccccCEEEC
Confidence 455555 45666664 334677777777776 666666544 5667777777776632 221 11 122345555555
Q ss_pred ccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhh-
Q 048829 638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIA- 716 (976)
Q Consensus 638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~- 716 (976)
++|. ++.+ +..+..+ ++|++|++++|.+.+..+
T Consensus 86 s~n~-i~~l--~~~~~~l-------------------------------------------~~L~~L~l~~n~l~~~~~~ 119 (306)
T 2z66_A 86 SFNG-VITM--SSNFLGL-------------------------------------------EQLEHLDFQHSNLKQMSEF 119 (306)
T ss_dssp CSCS-EEEE--EEEEETC-------------------------------------------TTCCEEECTTSEEESSTTT
T ss_pred CCCc-cccC--hhhcCCC-------------------------------------------CCCCEEECCCCcccccccc
Confidence 5553 1111 1111111 344555555544433332
Q ss_pred hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCC-ccCCCCCCCCCccEEEecCCcCcccCCCcCCCCC
Q 048829 717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLE-SFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLT 795 (976)
Q Consensus 717 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~ 795 (976)
..+..+++|++|++++|......+..+..+++|++|++++|...+ .+|..+..+++|++|++++|...+..|..+..++
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 344455555555555544333334444445555555555553222 2344444455555555555543333344444455
Q ss_pred ccceEEEeCCCCCCc
Q 048829 796 SLQQLTIIGGELPSL 810 (976)
Q Consensus 796 ~L~~L~l~~~~l~~~ 810 (976)
+|++|++++|.+..+
T Consensus 200 ~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 200 SLQVLNMSHNNFFSL 214 (306)
T ss_dssp TCCEEECTTSCCSBC
T ss_pred CCCEEECCCCccCcc
Confidence 555555554444443
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=7.3e-21 Score=225.28 Aligned_cols=395 Identities=17% Similarity=0.156 Sum_probs=221.4
Q ss_pred cccccCCCCCeEEEcCCCCcccchh------hhhHHHHHHhhhccccccEEEeeccCCcccCccccC-CCCCccEEEeec
Q 048829 495 GLLQDICSLKSLEIRGCPKLQSLVA------EEEKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSL-SLSSLKEIEIYK 567 (976)
Q Consensus 495 ~~~~~l~~L~~L~l~~c~~l~~l~~------~~~~~~~~~l~~~~~~L~~L~L~~~~~l~~~~~~~~-~l~~L~~L~l~~ 567 (976)
..+..+++|+.|++++|+.+..+.. .....++..+...+++|++|++++|......+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 4456677788888888766543321 111123333334457888888888765444443443 577888888888
Q ss_pred CCCCCC--CCCc-CCCCCCcEEEEccCCCCCCCCCccc---cCCCCcccEEEEecCC-CCc--ccccc-cCCCCCcEEee
Q 048829 568 CSSLVS--FPEV-ALPSKLKKIEIRECDALKSLPEPWM---CDTSSSLEILKIWDCH-SLT--YIAEV-QLPLSLKRLDI 637 (976)
Q Consensus 568 c~~l~~--l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~---~~~l~~L~~L~l~~~~-~l~--~~~~~-~~~~~L~~L~l 637 (976)
|..++. ++.. ..+++|++|++++|. ++....... ...+++|++|++++|. .+. .+... ..+++|++|++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 765543 2222 246788888888876 444322111 1356788888888775 111 11111 23467888888
Q ss_pred ccCcCccccccccccccccccccCCCCcceEeecCC-------------------CCccccccCCCc-ccccccccccCC
Q 048829 638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSC-------------------PSLTCIFSKNEL-PATLESLEVGNL 697 (976)
Q Consensus 638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-------------------~~l~~~~~~~~~-~~~~~~~~~~~~ 697 (976)
++|..++.+ +..+..+ ++|+.|.++.| ++++.+...... ...+.. +...
T Consensus 219 ~~~~~~~~l--~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~--~~~~ 287 (594)
T 2p1m_B 219 NRAVPLEKL--ATLLQRA-------PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA--VYSV 287 (594)
T ss_dssp CTTSCHHHH--HHHHHHC-------TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG--GHHH
T ss_pred CCCCcHHHH--HHHHhcC-------CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH--HHHh
Confidence 887655543 3333332 56777765443 333332000000 000000 0001
Q ss_pred CCCceEEEEcCCCcchhh-hhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCC--------CCCCcc--CCC
Q 048829 698 PPSVKVLDVYGCPKLESI-AERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGC--------GNLESF--PEG 766 (976)
Q Consensus 698 ~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~--------~~l~~~--~~~ 766 (976)
.++|++|++++|.+.... ...+..+++|++|++++|.....++.....+++|++|++++| ..++.. ...
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 278999999999865543 344678899999999987222233444445889999999553 222211 000
Q ss_pred CCCCCCccEEEecCCcCcccCCCcC-CCCCccceEEEe--C----CCCCCccc-------CCCCCccceeeecCCCCccc
Q 048829 767 GLPCAKLRRLEIYDCKRLEALPKGL-HNLTSLQQLTII--G----GELPSLEE-------DGLPTNLHSLRIEGNMGIWK 832 (976)
Q Consensus 767 ~~~~~~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~l~--~----~~l~~~~~-------~~~~~~L~~L~l~~~~~~~~ 832 (976)
...+++|+.|.+..+......+..+ ..+++|+.|+++ + +.++..+. ...+++|+.|++++ .+...
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 1136789999776655333222333 357889999998 3 55654332 12356888888876 33333
Q ss_pred hhhhcCCccc-ccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcccc-ccccCCCCCCeEee
Q 048829 833 SMIERGRGFH-RFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLS-SSIVDLQNLTKLTL 910 (976)
Q Consensus 833 ~~~~~~~~~~-~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l 910 (976)
.+. .+. .+++|+.|++++|. ......... ...+++|+.|++++|+.-.... ..+..+++|++|++
T Consensus 447 ~~~----~l~~~~~~L~~L~L~~~~-i~~~~~~~l--------~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 447 VFE----YIGTYAKKMEMLSVAFAG-DSDLGMHHV--------LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp HHH----HHHHHCTTCCEEEEESCC-SSHHHHHHH--------HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred HHH----HHHHhchhccEeeccCCC-CcHHHHHHH--------HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 331 233 37888888888842 111100000 0246888888888876522222 24455788888888
Q ss_pred cCCCC
Q 048829 911 YDCPK 915 (976)
Q Consensus 911 ~~c~~ 915 (976)
++|+.
T Consensus 514 ~~~~~ 518 (594)
T 2p1m_B 514 SSCSV 518 (594)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 88865
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=8.1e-18 Score=195.14 Aligned_cols=260 Identities=26% Similarity=0.353 Sum_probs=199.5
Q ss_pred CCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccccCCCCCcEEee
Q 048829 558 SSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDI 637 (976)
Q Consensus 558 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 637 (976)
.+++.|++++ +.++.+|... +++|++|++++|. ++.+|. .+++|++|++++|. ++.++. .+++|+.|++
T Consensus 40 ~~l~~L~ls~-n~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGE-SGLTTLPDCL-PAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCS-SCCSCCCSCC-CTTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecC-CCcCccChhh-CCCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC
Confidence 4689999998 6788888633 4899999999997 777776 47889999999975 556665 5667888888
Q ss_pred ccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhh
Q 048829 638 QRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAE 717 (976)
Q Consensus 638 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 717 (976)
++|. ++.+ |. .+++|+.|++++|.+.. +|.
T Consensus 109 s~N~-l~~l--~~----------------------------------------------~l~~L~~L~L~~N~l~~-lp~ 138 (622)
T 3g06_A 109 FSNP-LTHL--PA----------------------------------------------LPSGLCKLWIFGNQLTS-LPV 138 (622)
T ss_dssp CSCC-CCCC--CC----------------------------------------------CCTTCCEEECCSSCCSC-CCC
T ss_pred cCCc-CCCC--CC----------------------------------------------CCCCcCEEECCCCCCCc-CCC
Confidence 8774 2222 11 12678888998887654 444
Q ss_pred hhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCcc
Q 048829 718 RLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSL 797 (976)
Q Consensus 718 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L 797 (976)
.+++|++|++++| .++.+|.. +++|+.|++++| .++.+| ..+++|+.|++++|. +..+|.. +++|
T Consensus 139 ---~l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L 203 (622)
T 3g06_A 139 ---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPTL---PSEL 203 (622)
T ss_dssp ---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCCC---CTTC
T ss_pred ---CCCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCCc---cchh
Confidence 2488999999996 55566643 578999999998 566777 346799999999988 5667653 4789
Q ss_pred ceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCC
Q 048829 798 QQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPL 877 (976)
Q Consensus 798 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~ 877 (976)
+.|++++|.+..++. .+++|+.|++++|.+.... ..+++|++|++++ +.+..+|. .
T Consensus 204 ~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~--N~L~~lp~------------~ 259 (622)
T 3g06_A 204 YKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSG--NRLTSLPM------------L 259 (622)
T ss_dssp CEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCS--SCCSCCCC------------C
T ss_pred hEEECcCCcccccCC--CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCC--CCCCcCCc------------c
Confidence 999999999998874 4688999999999876522 3568899999998 35666665 3
Q ss_pred ccccceeeccccCCCccccccccCCCCCCeEeecCCCCccc
Q 048829 878 PASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKY 918 (976)
Q Consensus 878 l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~ 918 (976)
+++|+.|++++ +.++.+|..+..+++|+.|++++|+..+.
T Consensus 260 ~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 260 PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred cccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 57899999999 57889998899999999999999764433
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=9.4e-20 Score=196.05 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=152.2
Q ss_pred cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEE
Q 048829 533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEIL 612 (976)
Q Consensus 533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 612 (976)
+++|+.|++++|......|..+..+++|++|++++ +.++..+....+++|++|++++|. ++.++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~-------------- 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLDLESLSTLRTLDLNNNY-VQELL-------------- 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-SCCEEEEEETTCTTCCEEECCSSE-EEEEE--------------
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-CcCCcchhhhhcCCCCEEECcCCc-ccccc--------------
Confidence 36777777777766555555667777777777777 344433333445555555555554 22222
Q ss_pred EEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccc
Q 048829 613 KIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESL 692 (976)
Q Consensus 613 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 692 (976)
..++|+.|++++|.. +.+ +. .
T Consensus 97 ---------------~~~~L~~L~l~~n~l-~~~--~~--------------------~--------------------- 117 (317)
T 3o53_A 97 ---------------VGPSIETLHAANNNI-SRV--SC--------------------S--------------------- 117 (317)
T ss_dssp ---------------ECTTCCEEECCSSCC-SEE--EE--------------------C---------------------
T ss_pred ---------------CCCCcCEEECCCCcc-CCc--Cc--------------------c---------------------
Confidence 113455666655531 111 00 0
Q ss_pred cccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccc-cCCCCCcEEEccCCCCCCccCCCCCCCC
Q 048829 693 EVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGL-HNLCQLQQIGIGGCGNLESFPEGGLPCA 771 (976)
Q Consensus 693 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (976)
..++|++|++++|.+.+..+..+..+++|++|++++|......+..+ ..+++|++|++++| .++.++.. ..++
T Consensus 118 ----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~ 191 (317)
T 3o53_A 118 ----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFA 191 (317)
T ss_dssp ----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCT
T ss_pred ----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccc
Confidence 01567888888887777777777788888888888865554445555 36788888888888 45555543 3477
Q ss_pred CccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC-CCCCccceeeecCCCCccchhhhcCCcccccCcccEE
Q 048829 772 KLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL 850 (976)
Q Consensus 772 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 850 (976)
+|++|++++|. +..+|..+..+++|+.|++++|.+..++.. ..+++|+.|++++|+......+ ..+..+++|+.|
T Consensus 192 ~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l 267 (317)
T 3o53_A 192 KLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTV 267 (317)
T ss_dssp TCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHH
T ss_pred cCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEE
Confidence 88888888887 556666788888888888888888877643 3456778888888777633332 346667777777
Q ss_pred EEec
Q 048829 851 LIRG 854 (976)
Q Consensus 851 ~l~~ 854 (976)
++++
T Consensus 268 ~l~~ 271 (317)
T 3o53_A 268 AKQT 271 (317)
T ss_dssp HHHH
T ss_pred ECCC
Confidence 7775
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.6e-18 Score=182.07 Aligned_cols=205 Identities=22% Similarity=0.240 Sum_probs=166.6
Q ss_pred CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCcc-CCCCCCCCCccE
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESF-PEGGLPCAKLRR 775 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~ 775 (976)
+|++|++|++++|.+.+..+..+..+++|++|++++|......|..+.++++|++|++++|..++.+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3578999999999998887888999999999999997555444888999999999999999767776 556778999999
Q ss_pred EEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEe
Q 048829 776 LEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIR 853 (976)
Q Consensus 776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 853 (976)
|++++|......|..+..+++|++|++++|.+..++.. +.+++|++|++++|.+..... ..+.++++|++|+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECC
Confidence 99999996665677889999999999999999988764 347889999999998776544 457888999999999
Q ss_pred ccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCc
Q 048829 854 GCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKL 916 (976)
Q Consensus 854 ~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l 916 (976)
+ +......|..+ ..+++|+.|++++ +.++.++. .+..+++|++|++++|+..
T Consensus 186 ~-n~l~~~~~~~~---------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 186 Q-NRVAHVHPHAF---------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp S-SCCCEECTTTT---------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred C-CcccccCHhHc---------cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 8 33333334443 5788999999999 57777765 5788899999999987643
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.1e-18 Score=185.06 Aligned_cols=220 Identities=18% Similarity=0.243 Sum_probs=125.1
Q ss_pred cEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCccc-ccc-cCCCCCcEEeec
Q 048829 561 KEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYI-AEV-QLPLSLKRLDIQ 638 (976)
Q Consensus 561 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~-~~~~~L~~L~l~ 638 (976)
+.++.++ ..++.+|. ..+++|++|++++|. ++.++...+ ..+++|++|++++|. ++.+ +.. ..+++|++|+++
T Consensus 14 ~~~~c~~-~~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPV-GIPAASQRIFLHGNR-ISHVPAASF-RACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCS-SCCSSCCT-TCCTTCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCc-CCcccCCc-CCCCCceEEEeeCCc-CCccCHHHc-ccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCC
Confidence 3455555 45566653 345667777777766 555554433 466677777776653 2332 211 334455566665
Q ss_pred cCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhh
Q 048829 639 RCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER 718 (976)
Q Consensus 639 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 718 (976)
+|..++.+. +..+.. + ++|++|++++|.+.+..+..
T Consensus 89 ~n~~l~~~~-~~~~~~------------------------------------------l-~~L~~L~l~~n~l~~~~~~~ 124 (285)
T 1ozn_A 89 DNAQLRSVD-PATFHG------------------------------------------L-GRLHTLHLDRCGLQELGPGL 124 (285)
T ss_dssp SCTTCCCCC-TTTTTT------------------------------------------C-TTCCEEECTTSCCCCCCTTT
T ss_pred CCCCccccC-HHHhcC------------------------------------------C-cCCCEEECCCCcCCEECHhH
Confidence 554333320 011110 0 56677777777666666666
Q ss_pred hcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCCcCCCCCcc
Q 048829 719 LDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSL 797 (976)
Q Consensus 719 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L 797 (976)
+..+++|++|++++|......+..+..+++|++|++++| .++.+|. .+..+++|++|++++|...+..|..+..+++|
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 777777777777775443333444666777777777777 4444544 35556777777777776555556666777777
Q ss_pred ceEEEeCCCCCCcccC--CCCCccceeeecCCCCc
Q 048829 798 QQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGI 830 (976)
Q Consensus 798 ~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~ 830 (976)
+.|++++|.+..++.. ..+++|+.|++++|+..
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 7777777766665431 23445555555555443
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=1.4e-20 Score=222.75 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=85.1
Q ss_pred CCceEEEEcCCCcchhhhhhhc-CCCCCceEEee-----cCCCcccc------cccccCCCCCcEEEccCCCCCCc-cCC
Q 048829 699 PSVKVLDVYGCPKLESIAERLD-NNTSLETINIS-----NCENLKIL------SSGLHNLCQLQQIGIGGCGNLES-FPE 765 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~-----~c~~l~~l------p~~~~~l~~L~~L~l~~~~~l~~-~~~ 765 (976)
++|++|.++.+.+.+..+..+. .+++|++|+++ +|+.++.. +..+.++++|++|++++ .++. .+.
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~ 449 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFE 449 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHH
Confidence 6777787777776666555554 57888888888 55666633 22355677888888865 2221 111
Q ss_pred CCC-CCCCccEEEecCCcCcccCCCcC-CCCCccceEEEeCCCCCCccc---CCCCCccceeeecCCCCccchhhhcCCc
Q 048829 766 GGL-PCAKLRRLEIYDCKRLEALPKGL-HNLTSLQQLTIIGGELPSLEE---DGLPTNLHSLRIEGNMGIWKSMIERGRG 840 (976)
Q Consensus 766 ~~~-~~~~L~~L~l~~c~~l~~~~~~l-~~l~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 840 (976)
.+. .+++|++|++++|......+..+ ..+++|++|++++|.++.... ...+++|+.|++++|+....... ..
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l 526 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACK---LL 526 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHH---HH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH---HH
Confidence 111 25678888888777433222222 456777777777776643211 12245677777777766332221 11
Q ss_pred ccccCcccEEEEec
Q 048829 841 FHRFSSLRYLLIRG 854 (976)
Q Consensus 841 ~~~l~~L~~L~l~~ 854 (976)
...+|+|+...+..
T Consensus 527 ~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 527 GQKMPKLNVEVIDE 540 (594)
T ss_dssp HHHCTTEEEEEECS
T ss_pred HHhCCCCEEEEecC
Confidence 14455555544443
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=5.7e-18 Score=191.44 Aligned_cols=222 Identities=15% Similarity=0.181 Sum_probs=183.2
Q ss_pred CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccE
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRR 775 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 775 (976)
++++++.|+|++|.+.+..+..+.++++|++|++++|......+..+.++++|++|++++| .++.+|. .+..+++|++
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCce
Confidence 3478999999999998888899999999999999997655555688999999999999999 5666665 5777999999
Q ss_pred EEecCCcCcccCCCcCCCCCccceEEEeC-CCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEE
Q 048829 776 LEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLI 852 (976)
Q Consensus 776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 852 (976)
|++++|......+..+..+++|++|++++ +.+..++.. ..+++|++|++++|.+.... .+..+++|++|++
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L 214 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDL 214 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEEC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEEC
Confidence 99999995444445789999999999999 778777764 34789999999999887542 3789999999999
Q ss_pred eccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCC--ccccc
Q 048829 853 RGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGL--PSSLL 929 (976)
Q Consensus 853 ~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~ 929 (976)
++ + .+..++... |..+++|+.|++++ +.++.++. .+..+++|++|++++ ++++.++...+ .++|+
T Consensus 215 s~-N-~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 215 SG-N-HLSAIRPGS--------FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp TT-S-CCCEECTTT--------TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCC
T ss_pred CC-C-ccCccChhh--------hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCC
Confidence 99 3 445443332 36899999999999 57777754 788999999999999 57888887654 47999
Q ss_pred ceeecCCc
Q 048829 930 QLRIYRCP 937 (976)
Q Consensus 930 ~L~i~~c~ 937 (976)
.|++++||
T Consensus 283 ~L~L~~Np 290 (440)
T 3zyj_A 283 RIHLHHNP 290 (440)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 99999876
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=3.9e-18 Score=193.49 Aligned_cols=222 Identities=18% Similarity=0.176 Sum_probs=182.7
Q ss_pred CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccE
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRR 775 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~ 775 (976)
+|+++++|+|++|.+.+..+..+.++++|++|++++|......|..+.++++|++|++++| .++.+|.. +..+++|++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCE
Confidence 4578999999999999988999999999999999997655555788999999999999999 46666654 667999999
Q ss_pred EEecCCcCcccCCCcCCCCCccceEEEeC-CCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEE
Q 048829 776 LEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLI 852 (976)
Q Consensus 776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 852 (976)
|++++|......+..+..+++|+.|++++ +.+..++.. ..+++|++|++++|.+.... .+..+++|++|++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L 225 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEM 225 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEEC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc------cccccccccEEEC
Confidence 99999985443445789999999999999 788887764 34789999999999887642 3788999999999
Q ss_pred eccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccc-cccccCCCCCCeEeecCCCCccccCCCCC--ccccc
Q 048829 853 RGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESL-SSSIVDLQNLTKLTLYDCPKLKYFPEKGL--PSSLL 929 (976)
Q Consensus 853 ~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~ 929 (976)
++ + .+..++... |..+++|+.|++++ +.++.+ +..+..+++|+.|++++| +++.++...+ .++|+
T Consensus 226 s~-N-~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 226 SG-N-HFPEIRPGS--------FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp TT-S-CCSEECGGG--------GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCC
T ss_pred cC-C-cCcccCccc--------ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCC
Confidence 99 3 444443322 36899999999999 566666 447889999999999995 7888887655 47899
Q ss_pred ceeecCCc
Q 048829 930 QLRIYRCP 937 (976)
Q Consensus 930 ~L~i~~c~ 937 (976)
+|++++||
T Consensus 294 ~L~L~~Np 301 (452)
T 3zyi_A 294 ELHLHHNP 301 (452)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 99999976
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.6e-18 Score=185.80 Aligned_cols=223 Identities=17% Similarity=0.129 Sum_probs=160.1
Q ss_pred CCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcc--cccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccE
Q 048829 698 PPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLK--ILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRR 775 (976)
Q Consensus 698 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 775 (976)
|++|++|++++|.+....+..+.++++|++|++++|.... ..|..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 4678888888888765445557888888888888864332 22556667888888888888 45567766777888888
Q ss_pred EEecCCcCcccCC--CcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEE
Q 048829 776 LEIYDCKRLEALP--KGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLL 851 (976)
Q Consensus 776 L~l~~c~~l~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 851 (976)
|++++|. +..++ ..+..+++|++|++++|.+...... ..+++|++|++++|.+.....+ ..+..+++|++|+
T Consensus 106 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~ 181 (306)
T 2z66_A 106 LDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLD 181 (306)
T ss_dssp EECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEE
T ss_pred EECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch---hHHhhCcCCCEEE
Confidence 8888887 44444 3678888888888888887765543 3467888888888877652222 4678888999999
Q ss_pred EeccCCCCccC-CCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCC--CCccc
Q 048829 852 IRGCDDDMVSF-PPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEK--GLPSS 927 (976)
Q Consensus 852 l~~c~~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~--~~~~~ 927 (976)
+++ + .+..+ |... ..+++|+.|++++ +.++.++. .+..+++|++|++++|+..+..+.. .+|++
T Consensus 182 Ls~-n-~l~~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 182 LSQ-C-QLEQLSPTAF---------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp CTT-S-CCCEECTTTT---------TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred CCC-C-CcCCcCHHHh---------cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 988 3 44444 4333 5788999999998 56777765 6778889999999986543333332 34568
Q ss_pred ccceeecCCc
Q 048829 928 LLQLRIYRCP 937 (976)
Q Consensus 928 L~~L~i~~c~ 937 (976)
|++|++++|+
T Consensus 250 L~~L~L~~N~ 259 (306)
T 2z66_A 250 LAFLNLTQND 259 (306)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEccCCC
Confidence 9999998875
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=2.5e-21 Score=221.44 Aligned_cols=132 Identities=23% Similarity=0.129 Sum_probs=77.2
Q ss_pred CCceEEEEcCCCcchhhhhhhc-----CCCCCceEEeecCCCccc----ccccccCCCCCcEEEccCCCCCCcc-CCC--
Q 048829 699 PSVKVLDVYGCPKLESIAERLD-----NNTSLETINISNCENLKI----LSSGLHNLCQLQQIGIGGCGNLESF-PEG-- 766 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~-----~l~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~~~~l~~~-~~~-- 766 (976)
++|++|++++|.+.+..+..+. ..++|++|++++|..... ++..+..+++|++|++++|. ++.. +..
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~ 362 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELC 362 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHH
Confidence 5677777777766554433322 235777777777654432 35556667777777777773 3221 111
Q ss_pred --C-CCCCCccEEEecCCcCcc----cCCCcCCCCCccceEEEeCCCCCCcccC-------CCCCccceeeecCCCCcc
Q 048829 767 --G-LPCAKLRRLEIYDCKRLE----ALPKGLHNLTSLQQLTIIGGELPSLEED-------GLPTNLHSLRIEGNMGIW 831 (976)
Q Consensus 767 --~-~~~~~L~~L~l~~c~~l~----~~~~~l~~l~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~ 831 (976)
+ ...++|++|++++|.... .+|..+..+++|++|++++|.+...... ....+|+.|++.++....
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 1 124677888888776433 5666666777777787777777643211 112356666665555443
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.5e-18 Score=197.67 Aligned_cols=237 Identities=11% Similarity=0.061 Sum_probs=155.3
Q ss_pred ccccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829 532 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEI 611 (976)
Q Consensus 532 ~~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 611 (976)
.+++|+.|++++|......|..+..+++|++|++++| .++..+....+++|++|++++|. ++.++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------------ 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLV------------ 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEE------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCC------------
Confidence 3457777777777666655566777777777777773 44433334445555555555554 322221
Q ss_pred EEEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcceEeecCCCCccccccCCCccccccc
Q 048829 612 LKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLES 691 (976)
Q Consensus 612 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 691 (976)
.++|+.|++++|... .+ +..
T Consensus 98 -----------------~~~L~~L~L~~N~l~-~~--~~~---------------------------------------- 117 (487)
T 3oja_A 98 -----------------GPSIETLHAANNNIS-RV--SCS---------------------------------------- 117 (487)
T ss_dssp -----------------CTTCCEEECCSSCCC-CE--EEC----------------------------------------
T ss_pred -----------------CCCcCEEECcCCcCC-CC--Ccc----------------------------------------
Confidence 134666666655321 11 000
Q ss_pred ccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccccccc-CCCCCcEEEccCCCCCCccCCCCCCC
Q 048829 692 LEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLH-NLCQLQQIGIGGCGNLESFPEGGLPC 770 (976)
Q Consensus 692 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~ 770 (976)
..++|+.|++++|.+.+..|..++.+++|++|++++|......|..+. .+++|++|++++|. ++.+|.. ..+
T Consensus 118 -----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~-~~l 190 (487)
T 3oja_A 118 -----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-VVF 190 (487)
T ss_dssp -----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-CCC
T ss_pred -----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc-ccC
Confidence 015678888888888777777788888888888888766655666665 68888888888884 5555543 347
Q ss_pred CCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC-CCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829 771 AKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED-GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY 849 (976)
Q Consensus 771 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 849 (976)
++|+.|++++|. +..+|..+..+++|+.|++++|.+..+|.. ..+++|+.|++++|+.....++ ..+..++.|+.
T Consensus 191 ~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~L~~ 266 (487)
T 3oja_A 191 AKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQT 266 (487)
T ss_dssp TTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHHHHH
T ss_pred CCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCCCcE
Confidence 788888888887 555666688888888888888888877653 4567888888888887733332 34566777777
Q ss_pred EEEe
Q 048829 850 LLIR 853 (976)
Q Consensus 850 L~l~ 853 (976)
++++
T Consensus 267 l~~~ 270 (487)
T 3oja_A 267 VAKQ 270 (487)
T ss_dssp HHHH
T ss_pred Eecc
Confidence 7775
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=4.5e-18 Score=182.88 Aligned_cols=212 Identities=15% Similarity=0.129 Sum_probs=114.3
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|.+.+..|..+..+++|++|++++|......+ +..+++|++|++++| .++.++. .++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEEEC
Confidence 456666666666655555666666666666666643332222 555666666666666 3444432 256666666
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCC--CCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGL--PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD 856 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 856 (976)
++|.... ++. ..+++|++|++++|.+..++...+ +++|++|++++|.+....+. .....+++|++|++++
T Consensus 107 ~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~-- 178 (317)
T 3o53_A 107 ANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQY-- 178 (317)
T ss_dssp CSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTT--
T ss_pred CCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---HHhhccCcCCEEECCC--
Confidence 6665322 221 224556666666666665544322 45666666666665554432 1123556666666666
Q ss_pred CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCC-CCcccccceeecC
Q 048829 857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK-GLPSSLLQLRIYR 935 (976)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~i~~ 935 (976)
+.+..++... .+++|+.|++++ +.++.+|..+..+++|++|++++| .++.+|.. ...++|+.|++++
T Consensus 179 N~l~~~~~~~----------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 179 NFIYDVKGQV----------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp SCCCEEECCC----------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred CcCccccccc----------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccC
Confidence 2333333322 356666666666 455566555656666666666663 45555542 1235666666666
Q ss_pred Cc
Q 048829 936 CP 937 (976)
Q Consensus 936 c~ 937 (976)
|+
T Consensus 247 N~ 248 (317)
T 3o53_A 247 NG 248 (317)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.7e-17 Score=170.57 Aligned_cols=201 Identities=17% Similarity=0.186 Sum_probs=137.4
Q ss_pred CCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccE
Q 048829 698 PPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRR 775 (976)
Q Consensus 698 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~ 775 (976)
|++|++|++++|.+.+..+..+.++++|++|++++|..++.++ ..+.++++|++|++++|..++.++. .+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3678888888888777666678888888888888876566664 4677788888888887335666654 3456778888
Q ss_pred EEecCCcCcccCCCcCCCCCccc---eEEEeCC-CCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCccc-EE
Q 048829 776 LEIYDCKRLEALPKGLHNLTSLQ---QLTIIGG-ELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR-YL 850 (976)
Q Consensus 776 L~l~~c~~l~~~~~~l~~l~~L~---~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L 850 (976)
|++++|. ++.+|. +..+++|+ +|++++| .+..++. ..+.++++|+ +|
T Consensus 110 L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~~~~~l~~L~~~L 161 (239)
T 2xwt_C 110 LGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------------NAFQGLCNETLTL 161 (239)
T ss_dssp EEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------------TTTTTTBSSEEEE
T ss_pred EeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCc--------------------------ccccchhcceeEE
Confidence 8888776 445665 66666666 7777776 6665543 3456677777 77
Q ss_pred EEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCC-CCCCeEeecCCCCccccCCCCCcccc
Q 048829 851 LIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDL-QNLTKLTLYDCPKLKYFPEKGLPSSL 928 (976)
Q Consensus 851 ~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~L 928 (976)
++++ +.+..+|... |.. ++|+.|++++|..++.+|. .+..+ ++|+.|++++ +.++.+|.. ..++|
T Consensus 162 ~l~~--n~l~~i~~~~--------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L 228 (239)
T 2xwt_C 162 KLYN--NGFTSVQGYA--------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHL 228 (239)
T ss_dssp ECCS--CCCCEECTTT--------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTC
T ss_pred EcCC--CCCcccCHhh--------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccC
Confidence 7776 3455666544 223 6788888888545777765 56677 7888888887 556777765 34578
Q ss_pred cceeecCCcch
Q 048829 929 LQLRIYRCPLI 939 (976)
Q Consensus 929 ~~L~i~~c~~l 939 (976)
+.|++.+|..|
T Consensus 229 ~~L~l~~~~~l 239 (239)
T 2xwt_C 229 KELIARNTWTL 239 (239)
T ss_dssp SEEECTTC---
T ss_pred ceeeccCccCC
Confidence 88888777643
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=4.6e-19 Score=190.17 Aligned_cols=195 Identities=18% Similarity=0.149 Sum_probs=106.1
Q ss_pred CCceEEEEcCCCcchhhhhhh--cCCCCCceEEeecCCCcccccccccCC-----CCCcEEEccCCCCCCccCCCCCCCC
Q 048829 699 PSVKVLDVYGCPKLESIAERL--DNNTSLETINISNCENLKILSSGLHNL-----CQLQQIGIGGCGNLESFPEGGLPCA 771 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (976)
++|++|++++|.+.+.+|..+ ..+++|++|++++|.. +.+|..+..+ ++|++|++++|...+..|..+..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 567777777777666666654 6677777777776543 3335555554 6677777777643333335556666
Q ss_pred CccEEEecCCcCccc--CCCcC--CCCCccceEEEeCCCCCCcccC-----CCCCccceeeecCCCCccchhhhcCCccc
Q 048829 772 KLRRLEIYDCKRLEA--LPKGL--HNLTSLQQLTIIGGELPSLEED-----GLPTNLHSLRIEGNMGIWKSMIERGRGFH 842 (976)
Q Consensus 772 ~L~~L~l~~c~~l~~--~~~~l--~~l~~L~~L~l~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 842 (976)
+|++|++++|...+. +|..+ ..+++|++|++++|.+..++.. ..+++|++|++++|.+....+. ..+.
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~ 250 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA---PSCD 250 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC---SCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch---hhhh
Confidence 777777777664433 22222 5666666666666666643321 1234555555555555443321 1233
Q ss_pred ccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecC
Q 048829 843 RFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYD 912 (976)
Q Consensus 843 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 912 (976)
.+++|++|++++ +.+..+|... . ++|+.|++++ +.++.+|. +..+++|++|++++
T Consensus 251 ~l~~L~~L~Ls~--N~l~~ip~~~----------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 251 WPSQLNSLNLSF--TGLKQVPKGL----------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CCTTCCEEECTT--SCCSSCCSSC----------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTT
T ss_pred hcCCCCEEECCC--CccChhhhhc----------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccC
Confidence 445555555555 2333444432 1 4555555555 34555543 45555555555555
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=2e-18 Score=185.11 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCceEEEEcCCCcchh--hhhhh--cCCCCCceEEeecCCCcc--ccc-ccccCCCCCcEEEccCCCCCCccC-CCCCCC
Q 048829 699 PSVKVLDVYGCPKLES--IAERL--DNNTSLETINISNCENLK--ILS-SGLHNLCQLQQIGIGGCGNLESFP-EGGLPC 770 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~--~~~~~--~~l~~L~~L~l~~c~~l~--~lp-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~ 770 (976)
++|++|++++|+..+. .+..+ ..+++|++|++++|.... .++ ..+.++++|++|++++|...+..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 5566666666665554 23333 666777777777753321 222 223456677777777774333332 223345
Q ss_pred CCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCc
Q 048829 771 AKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGI 830 (976)
Q Consensus 771 ~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 830 (976)
++|++|++++|. ++.+|..+. ++|++|++++|.|+.+|....+++|++|++++|++.
T Consensus 253 ~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 253 SQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred CCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence 677777777766 446666554 666677776666666654444555666666555543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1e-17 Score=190.84 Aligned_cols=213 Identities=15% Similarity=0.121 Sum_probs=136.3
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|+|++|.+.+..|..+..+++|++|++++|......| +..+++|++|++++| .++.+|. .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence 467777777777777666777777777777777755433333 667777777777777 4554543 257777777
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD 856 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 856 (976)
++|......+ ..+++|+.|++++|.+..++... .+++|+.|++++|.+....+. .....+++|++|++++|
T Consensus 107 ~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~l~~L~~L~Ls~N- 179 (487)
T 3oja_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYN- 179 (487)
T ss_dssp CSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTS-
T ss_pred cCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---HHhhhCCcccEEecCCC-
Confidence 7776433332 23567777777777777665432 356777777777777665542 12236777777777772
Q ss_pred CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCC-CCcccccceeecC
Q 048829 857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEK-GLPSSLLQLRIYR 935 (976)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~i~~ 935 (976)
.+..++.. ..+++|+.|++++ +.++.+|..+..+++|+.|++++ +.++.+|.. ...++|+.|++++
T Consensus 180 -~l~~~~~~----------~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 180 -FIYDVKGQ----------VVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp -CCCEEECC----------CCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTT
T ss_pred -cccccccc----------ccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCC
Confidence 34444332 2567777777777 56667766677777777777777 345566653 2246777777777
Q ss_pred Ccc
Q 048829 936 CPL 938 (976)
Q Consensus 936 c~~ 938 (976)
|+.
T Consensus 247 N~l 249 (487)
T 3oja_A 247 NGF 249 (487)
T ss_dssp CCB
T ss_pred CCC
Confidence 653
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=5.2e-17 Score=171.05 Aligned_cols=203 Identities=19% Similarity=0.145 Sum_probs=159.0
Q ss_pred CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEE
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRL 776 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 776 (976)
+|++|++|++++|.+.+..+..+.++++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45789999999999888777789999999999999975544445678899999999999995444444567789999999
Q ss_pred EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcc--c-CCCCCccceeeecCCCCccchhhhcCCcccccCccc----E
Q 048829 777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLE--E-DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLR----Y 849 (976)
Q Consensus 777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----~ 849 (976)
++++|......+..+..+++|++|++++|.+..+. . .+.+++|++|++++|.+..... ..+..+++|+ .
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhcccccee
Confidence 99999855544457899999999999999998743 2 3456899999999998877654 3466666666 8
Q ss_pred EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCcccccc-ccCCCCCCeEeecCCCC
Q 048829 850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSS-IVDLQNLTKLTLYDCPK 915 (976)
Q Consensus 850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~ 915 (976)
|++++ +.+..++... ....+|+.|++++ +.++.+|.. +..+++|++|++++++.
T Consensus 182 L~ls~--n~l~~~~~~~---------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 182 LDLSL--NPMNFIQPGA---------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EECCS--SCCCEECTTS---------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred eecCC--CcccccCccc---------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCcc
Confidence 88888 4566666554 2445899999999 568888764 57889999999998653
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.6e-16 Score=167.79 Aligned_cols=173 Identities=18% Similarity=0.133 Sum_probs=118.0
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
+.++.|++++|.+.+..+..+..+++|++|++++| .++.++.. ..+++|++|++++| .++.+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence 56788888888877777778888888888888885 45555443 66888888888888 56677777777888888888
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD 856 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 856 (976)
++|......+..+..+++|++|++++|.+..++... .+++|+.|++++|.+..... ..+.++++|+.|++++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~-- 181 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQE-- 181 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCS--
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH----HHhcCcCCCCEEECCC--
Confidence 888744333456788888888888888888776543 34566666666666554333 3455666666666665
Q ss_pred CCCccCCCCCcccccCCCCCCccccceeecccc
Q 048829 857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFF 889 (976)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 889 (976)
+.+..+|... ...++|+.|+++++
T Consensus 182 N~l~~ip~~~---------~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 182 NSLYTIPKGF---------FGSHLLPFAFLHGN 205 (290)
T ss_dssp SCCCCCCTTT---------TTTCCCSEEECCSC
T ss_pred CcCCccChhh---------cccccCCeEEeCCC
Confidence 3455555554 24456666666653
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1.1e-16 Score=164.50 Aligned_cols=208 Identities=13% Similarity=0.246 Sum_probs=136.6
Q ss_pred CCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc--cCCCCCcEEeeccCcCccc
Q 048829 568 CSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQRCNKIRT 645 (976)
Q Consensus 568 c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~ 645 (976)
|..++.+|. .+++|++|++++|. ++.++...+ ..+++|++|++++|..++.++.. ..+++|++|++++|..++.
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~-l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETH-LRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCC-CSEECTTTT-TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccCccccCC--CCCcccEEEEeCCc-ceEECHHHc-cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 344666665 55577777777776 666665444 46777777777776555555542 3455677777766444443
Q ss_pred cccccc-cccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCC
Q 048829 646 LTVEEG-IQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTS 724 (976)
Q Consensus 646 ~~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~ 724 (976)
+ +.. +.. + ++|++|++++|.+.+ +|. +..+++
T Consensus 96 i--~~~~f~~------------------------------------------l-~~L~~L~l~~n~l~~-lp~-~~~l~~ 128 (239)
T 2xwt_C 96 I--DPDALKE------------------------------------------L-PLLKFLGIFNTGLKM-FPD-LTKVYS 128 (239)
T ss_dssp E--CTTSEEC------------------------------------------C-TTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred c--CHHHhCC------------------------------------------C-CCCCEEeCCCCCCcc-ccc-cccccc
Confidence 3 211 111 1 567777777776655 454 667777
Q ss_pred Cc---eEEeecCCCccccc-ccccCCCCCc-EEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCC-CcCCCC-Ccc
Q 048829 725 LE---TINISNCENLKILS-SGLHNLCQLQ-QIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALP-KGLHNL-TSL 797 (976)
Q Consensus 725 L~---~L~l~~c~~l~~lp-~~~~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~l~~l-~~L 797 (976)
|+ +|++++|..++.+| ..+.++++|+ +|++++| .++.+|...+..++|++|++++|+.++.+| ..+..+ ++|
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 77 88888874666664 4577788888 8888888 455777665555788888888886455554 456777 888
Q ss_pred ceEEEeCCCCCCcccCCCCCccceeeecCCC
Q 048829 798 QQLTIIGGELPSLEEDGLPTNLHSLRIEGNM 828 (976)
Q Consensus 798 ~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~ 828 (976)
+.|++++|.++.++.. .+++|+.|+++++.
T Consensus 208 ~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 208 SLLDVSQTSVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp SEEECTTCCCCCCCCT-TCTTCSEEECTTC-
T ss_pred cEEECCCCccccCChh-HhccCceeeccCcc
Confidence 8888888888877654 45667777666653
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=4e-16 Score=164.68 Aligned_cols=196 Identities=16% Similarity=0.111 Sum_probs=161.3
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
+++++++++++.+. .+|..+. ++++.|++++|......|..+..+++|++|++++| .++.++.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence 67899999887664 4555443 68999999997665555788999999999999999 56667654 67899999999
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD 856 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 856 (976)
++|. ++.+|..+..+++|++|++++|.|+.++.. ..+++|++|++++|.+..... ..+..+++|+.|++++
T Consensus 85 s~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~-- 157 (290)
T 1p9a_G 85 SHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLAN-- 157 (290)
T ss_dssp CSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTT--
T ss_pred CCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh----hhcccccCCCEEECCC--
Confidence 9998 678998899999999999999999998764 446899999999998876554 5678899999999998
Q ss_pred CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCC
Q 048829 857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPK 915 (976)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~ 915 (976)
+.+..+|... |..+++|+.|++++ +.++.+|.++...++|++|++++++-
T Consensus 158 N~l~~l~~~~--------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 158 NNLTELPAGL--------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCSCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCCccCHHH--------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 4667777654 35789999999998 68889998888888999999998764
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=6.4e-16 Score=168.51 Aligned_cols=237 Identities=16% Similarity=0.182 Sum_probs=151.2
Q ss_pred EEEeecCCCCCCCCCcCCCCCCcEEEEccCCCCCCCCCccccCCCCcccEEEEecCCCCcccccc--cCCCCCcEEeecc
Q 048829 562 EIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEPWMCDTSSSLEILKIWDCHSLTYIAEV--QLPLSLKRLDIQR 639 (976)
Q Consensus 562 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~ 639 (976)
.++.++ +.++.+|. ..++++++|++++|. ++.++...+ .++++|++|++++|...+.++.. ..+++++.+.+.+
T Consensus 13 ~v~C~~-~~Lt~iP~-~l~~~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQE-SKVTEIPS-DLPRNAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEES-TTCCSCCT-TCCTTCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecC-CCCCccCc-CcCCCCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 344444 45566653 224566666666665 566665544 46666666666666555554433 2333444444444
Q ss_pred CcCccccccccc-cccccccccCCCCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhh
Q 048829 640 CNKIRTLTVEEG-IQSSSSRRYTSSLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAER 718 (976)
Q Consensus 640 ~~~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 718 (976)
++.++.+ +.+ +..+ ++|++|++++|.+....+..
T Consensus 89 ~N~l~~l--~~~~f~~l-------------------------------------------~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 89 ANNLLYI--NPEAFQNL-------------------------------------------PNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp ETTCCEE--CTTSBCCC-------------------------------------------TTCCEEEEEEECCSSCCCCT
T ss_pred CCccccc--Cchhhhhc-------------------------------------------cccccccccccccccCCchh
Confidence 4344333 111 1111 56777777777666555555
Q ss_pred hcCCCCCceEEeecCCCcccccc-cccCC-CCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCC-cCCCCC
Q 048829 719 LDNNTSLETINISNCENLKILSS-GLHNL-CQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPK-GLHNLT 795 (976)
Q Consensus 719 ~~~l~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~ 795 (976)
+....++..|++.++..++.+|. .+..+ ..+++|++++| .++.+|...+..++|++|++.+|..++.+|. .+..++
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 66666778888888777777743 44554 46888889888 6777887777777889999988777888886 468888
Q ss_pred ccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 796 SLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 796 ~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
+|++|++++|.|+.+|... +.+|+.|.+.++...+..+ .+..+++|+.+++++
T Consensus 203 ~L~~LdLs~N~l~~lp~~~-~~~L~~L~~l~~~~l~~lP-----~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYG-LENLKKLRARSTYNLKKLP-----TLEKLVALMEASLTY 255 (350)
T ss_dssp CCSEEECTTSCCCCCCSSS-CTTCCEEECTTCTTCCCCC-----CTTTCCSCCEEECSC
T ss_pred ccchhhcCCCCcCccChhh-hccchHhhhccCCCcCcCC-----CchhCcChhhCcCCC
Confidence 9999999998888887643 5667777776666655544 256667777777654
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=9.2e-16 Score=167.27 Aligned_cols=222 Identities=19% Similarity=0.119 Sum_probs=167.6
Q ss_pred CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccC-CCCCCCCCcc
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLR 774 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~ 774 (976)
+|+++++|+|++|++....+.+|.++++|++|+|++|...+.+| ..|.++++|+++.+.++..++.++ ..+..+++|+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 35788999999998776556678999999999999987777775 456788888876665555677664 4567788999
Q ss_pred EEEecCCcCcccCCCcCCCCCccceEEEeC-CCCCCcccCC---CCCccceeeecCCCCccchhhhcCCcccccCcccEE
Q 048829 775 RLEIYDCKRLEALPKGLHNLTSLQQLTIIG-GELPSLEEDG---LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYL 850 (976)
Q Consensus 775 ~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 850 (976)
+|++++|......+..+....++..|++.+ +.+..++... ....++.|++++|.+..... . ....++|++|
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~----~-~f~~~~L~~l 182 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN----S-AFNGTQLDEL 182 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT----T-SSTTEEEEEE
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh----h-hccccchhHH
Confidence 999999884433334556677788888877 7788777643 34578889999998875443 2 3355789999
Q ss_pred EEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccc
Q 048829 851 LIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQ 930 (976)
Q Consensus 851 ~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~ 930 (976)
++++ ++.++.+|.+. |..+++|+.|++++ +.++.+|.+. +.+|+.|.+.+|+.++.+|.-.-.++|+.
T Consensus 183 ~l~~-~n~l~~i~~~~--------f~~l~~L~~LdLs~-N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP~l~~l~~L~~ 250 (350)
T 4ay9_X 183 NLSD-NNNLEELPNDV--------FHGASGPVILDISR-TRIHSLPSYG--LENLKKLRARSTYNLKKLPTLEKLVALME 250 (350)
T ss_dssp ECTT-CTTCCCCCTTT--------TTTEECCSEEECTT-SCCCCCCSSS--CTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred hhcc-CCcccCCCHHH--------hccCcccchhhcCC-CCcCccChhh--hccchHhhhccCCCcCcCCCchhCcChhh
Confidence 9988 57888888765 46889999999999 6899998633 67888888888888999987444568888
Q ss_pred eeecC
Q 048829 931 LRIYR 935 (976)
Q Consensus 931 L~i~~ 935 (976)
+++.+
T Consensus 251 l~l~~ 255 (350)
T 4ay9_X 251 ASLTY 255 (350)
T ss_dssp EECSC
T ss_pred CcCCC
Confidence 88754
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=9.3e-16 Score=160.62 Aligned_cols=177 Identities=20% Similarity=0.246 Sum_probs=97.3
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRL 776 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L 776 (976)
+++++|++++|.+.+..+..+..+++|++|++++|. ++.+| ..+..+++|++|++++|. ++.+|. .+..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence 456666666666555545556666666666666643 33332 334556666666666663 333433 23445566666
Q ss_pred EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829 777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD 856 (976)
Q Consensus 777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 856 (976)
++++|......+..+..+++|++|++++|.+..++. ..+..+++|++|++++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------------------~~~~~l~~L~~L~L~~-- 166 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------------------------GVFDKLTSLKELRLYN-- 166 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCS--
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH--------------------------hHccCCcccceeEecC--
Confidence 666655333333345555666666665555555443 3355566666666665
Q ss_pred CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829 857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~ 914 (976)
+.+..++... |..+++|+.|++++ +.++.+|. .+..+++|+.|++++|+
T Consensus 167 n~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 NQLKRVPEGA--------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCSCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCcEeChhH--------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 2344444332 24566666666666 35556655 35566677777776654
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=7.6e-16 Score=162.13 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=159.7
Q ss_pred hhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCCcCC
Q 048829 714 SIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLH 792 (976)
Q Consensus 714 ~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~l~ 792 (976)
.+|..+. ++|++|++++|......+..+.++++|++|++++| .++.++. .+..+++|++|++++|......+..+.
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 3444332 47999999997544444558899999999999999 5555554 577899999999999996555567899
Q ss_pred CCCccceEEEeCCCCCCccc--CCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccc
Q 048829 793 NLTSLQQLTIIGGELPSLEE--DGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRR 870 (976)
Q Consensus 793 ~l~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~ 870 (976)
.+++|++|++++|.+..++. .+.+++|++|++++|.+.....+ ..+.++++|++|++++ +.+..++...
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~---~~~~~l~~L~~L~Ls~--N~l~~~~~~~---- 168 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSS--NKIQSIYCTD---- 168 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC---GGGGGCTTCCEEECCS--SCCCEECGGG----
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc---hhhccCCCCCEEECCC--CCCCcCCHHH----
Confidence 99999999999999998876 34578999999999998764322 4688999999999999 3455554332
Q ss_pred cCCCCCCccccc----eeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCC--cccccceeecC
Q 048829 871 LGTTLPLPASLT----SLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGL--PSSLLQLRIYR 935 (976)
Q Consensus 871 ~~~~~~~l~~L~----~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~i~~ 935 (976)
+..+++|+ .|++++ +.++.++.......+|++|++++| .++.++...+ .++|++|++++
T Consensus 169 ----~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 169 ----LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp ----GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred ----hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 23556666 899999 688888887666779999999995 5888887544 47999999994
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.6e-15 Score=157.21 Aligned_cols=172 Identities=26% Similarity=0.333 Sum_probs=108.8
Q ss_pred CCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccC--CCCCccceee
Q 048829 748 QLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLR 823 (976)
Q Consensus 748 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~ 823 (976)
+|++|++++|. ++.++. .+..+++|++|++++|. +..+|. .+..+++|++|++++|.+..++.. ..+++|++|+
T Consensus 38 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 38 DTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 44444444442 223322 23344445555554444 223332 234445555555555555444432 2234555555
Q ss_pred ecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCC
Q 048829 824 IEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDL 902 (976)
Q Consensus 824 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l 902 (976)
+++|.+....+ ..+..+++|++|++++ +.+..++... |..+++|+.|++++ +.++.++. .+..+
T Consensus 116 l~~n~l~~~~~----~~~~~l~~L~~L~Ls~--n~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 116 LDRNQLKSLPP----RVFDSLTKLTYLSLGY--NELQSLPKGV--------FDKLTSLKELRLYN-NQLKRVPEGAFDKL 180 (270)
T ss_dssp CCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTC
T ss_pred CCCCccCeeCH----HHhCcCcCCCEEECCC--CcCCccCHhH--------ccCCcccceeEecC-CcCcEeChhHhccC
Confidence 55555444333 4578899999999999 3566676653 36899999999999 57888876 57889
Q ss_pred CCCCeEeecCCCCccccCCCCC--cccccceeecCCc
Q 048829 903 QNLTKLTLYDCPKLKYFPEKGL--PSSLLQLRIYRCP 937 (976)
Q Consensus 903 ~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~i~~c~ 937 (976)
++|++|++++| .++.++...+ .++|+.|++++||
T Consensus 181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 99999999995 6788887655 4789999998865
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=168.11 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=95.7
Q ss_pred CCCceEEeecCCCcccccccc--cCCCCCcEEEccCCCCCCccC----CCCCCCCCccEEEecCCcCcccCCCcCCCCCc
Q 048829 723 TSLETINISNCENLKILSSGL--HNLCQLQQIGIGGCGNLESFP----EGGLPCAKLRRLEIYDCKRLEALPKGLHNLTS 796 (976)
Q Consensus 723 ~~L~~L~l~~c~~l~~lp~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~ 796 (976)
++|++|++++|...+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 335555555544333444443 444555555555543322221 01123445555555555533333344455555
Q ss_pred cceEEEeCCCCCC---cccC---CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccc
Q 048829 797 LQQLTIIGGELPS---LEED---GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRR 870 (976)
Q Consensus 797 L~~L~l~~~~l~~---~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~ 870 (976)
|++|++++|.+.. ++.. +.+++|++|++++|.+....... .+.+..+++|++|++++ |......|....
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~--- 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AALAAAGVQPHSLDLSH-NSLRATVNPSAP--- 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HHHHHHTCCCSSEECTT-SCCCCCCCSCCS---
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HHHHhcCCCCCEEECCC-CCCCccchhhHH---
Confidence 5555555554432 1111 23345555555555543221100 01234556666666666 222223344431
Q ss_pred cCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCCCCCcccccceeecCCc
Q 048829 871 LGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPEKGLPSSLLQLRIYRCP 937 (976)
Q Consensus 871 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c~ 937 (976)
.+..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|...-.++|++|++++++
T Consensus 246 ---~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 ---RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTT
T ss_pred ---hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCC
Confidence 111235677777766 45666666553 5677777776 345555443334566777776664
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=6.6e-16 Score=165.46 Aligned_cols=197 Identities=18% Similarity=0.110 Sum_probs=159.6
Q ss_pred CCceEEEEcCCCcchhhhhhh--cCCCCCceEEeecCCCccccc----ccccCCCCCcEEEccCCCCCCccCCCCCCCCC
Q 048829 699 PSVKVLDVYGCPKLESIAERL--DNNTSLETINISNCENLKILS----SGLHNLCQLQQIGIGGCGNLESFPEGGLPCAK 772 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~lp----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 772 (976)
++|++|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 569999999999999998888 899999999999987665433 34457999999999999665555567778999
Q ss_pred ccEEEecCCcCccc--CC--CcCCCCCccceEEEeCCCCCCcccC-----CCCCccceeeecCCCCccchhhhcCCcccc
Q 048829 773 LRRLEIYDCKRLEA--LP--KGLHNLTSLQQLTIIGGELPSLEED-----GLPTNLHSLRIEGNMGIWKSMIERGRGFHR 843 (976)
Q Consensus 773 L~~L~l~~c~~l~~--~~--~~l~~l~~L~~L~l~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 843 (976)
|++|++++|...+. ++ ..+..+++|++|++++|.++.++.. +.+++|++|++++|.+....+ ..+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 246 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN----PSAPR 246 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC----SCCSS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch----hhHHh
Confidence 99999999986542 32 3447899999999999999877642 346899999999999887654 23444
Q ss_pred c---CcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCC
Q 048829 844 F---SSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 844 l---~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 914 (976)
+ ++|++|++++ +.+..+|... .++|+.|++++ +.++.+|. +..+++|+.|++++++
T Consensus 247 ~~~~~~L~~L~Ls~--N~l~~lp~~~-----------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 247 CMWSSALNSLNLSF--AGLEQVPKGL-----------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCTTCCCEECCS--SCCCSCCSCC-----------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ccCcCcCCEEECCC--CCCCchhhhh-----------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 4 7999999998 4566787754 38999999999 68888874 7889999999999965
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=5.3e-16 Score=162.60 Aligned_cols=130 Identities=18% Similarity=0.114 Sum_probs=85.0
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~ 777 (976)
++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|. ++.++.. +..+++|++|+
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEE
Confidence 566666776666665556667777777777777764333334445677778888888774 4444433 45677788888
Q ss_pred ecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchh
Q 048829 778 IYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSM 834 (976)
Q Consensus 778 l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 834 (976)
+++|...+..+..+..+++|+.|++++|.+.. .+++|+.++++.|......+
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----CTTTTHHHHHHHHHTGGGBB
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----cCcHHHHHHHHHHhCCCccc
Confidence 88777544444456777778888777776542 34567777777776665554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.2e-15 Score=162.69 Aligned_cols=194 Identities=17% Similarity=0.233 Sum_probs=160.2
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|.+.. ++ .+..+++|++|++++| .++.++. +..+++|++|++++|. ++.++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 689999999997655 44 5888999999999996 5566655 8899999999999995 66665 4677899999999
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCC
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDD 858 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~ 858 (976)
++|. +..++. +..+++|++|++++|.+..++....+++|+.|++++|.+..... +..+++|+.|++++| .
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n--~ 184 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDN--K 184 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSS--C
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCC--c
Confidence 9998 555654 89999999999999999998877778999999999998765432 788999999999993 4
Q ss_pred CccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccCC
Q 048829 859 MVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFPE 921 (976)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~~ 921 (976)
+..++. +..+++|+.|++++ +.++.++ .+..+++|+.|++++|+ ++..|.
T Consensus 185 l~~~~~----------l~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 185 ISDISP----------LASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CCCCGG----------GGGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred cCcChh----------hcCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence 555543 25789999999999 5788888 48899999999999954 565544
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=3.5e-15 Score=156.31 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=64.6
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~ 777 (976)
++|++|++++|.+.+. ..+..+++|++|++++|......+..+..+++|++|++++|. ++.++. .+..+++|++|+
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEE
Confidence 4445555555444331 234455555555555543222223334455555555555553 222322 234445555555
Q ss_pred ecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 778 IYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 778 l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
+++|...+..+..+..+++|++|++++|.+..++.. +.+++|+.|++++|.+....+ ..+..+++|++|++++
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCEEEccC
Confidence 555542222222334555555555555555544432 123344444444443333222 2234444444444444
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=2.2e-15 Score=160.81 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=151.3
Q ss_pred CCcceEeecCCCCccccccCCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccccc
Q 048829 663 SLLENLAISSCPSLTCIFSKNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSG 742 (976)
Q Consensus 663 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 742 (976)
++|+.|++++|. ++. ++ .+ .. .++|++|++++|.+.+..+ +..+++|++|++++|. ++.++ .
T Consensus 41 ~~L~~L~l~~~~-i~~-l~--~~---------~~-l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTT-IE--GV---------QY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-A 102 (308)
T ss_dssp HTCCEEECTTSC-CCC-CT--TG---------GG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-G
T ss_pred CCcCEEEeeCCC-ccC-ch--hh---------hc-cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-h
Confidence 789999998873 332 11 11 12 2789999999998766544 8999999999999965 55665 5
Q ss_pred ccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCcccee
Q 048829 743 LHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSL 822 (976)
Q Consensus 743 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L 822 (976)
+..+++|++|++++| .++.++. +..+++|++|++++|. +..++. +..+++|+.|++++|.+..++....+++|+.|
T Consensus 103 ~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 178 (308)
T 1h6u_A 103 IAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178 (308)
T ss_dssp GTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred hcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEE
Confidence 788999999999999 4566664 6778999999999997 555554 88899999999999999988877778899999
Q ss_pred eecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc
Q 048829 823 RIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS 897 (976)
Q Consensus 823 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~ 897 (976)
++++|.+....+ +..+++|++|++++| .+..++. +..+++|+.|++++ +.++..|.
T Consensus 179 ~l~~n~l~~~~~------l~~l~~L~~L~L~~N--~l~~~~~----------l~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 179 KADDNKISDISP------LASLPNLIEVHLKNN--QISDVSP----------LANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp ECCSSCCCCCGG------GGGCTTCCEEECTTS--CCCBCGG----------GTTCTTCCEEEEEE-EEEECCCE
T ss_pred ECCCCccCcChh------hcCCCCCCEEEccCC--ccCcccc----------ccCCCCCCEEEccC-CeeecCCe
Confidence 999998866433 678999999999983 4444442 25889999999999 56777665
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.6e-16 Score=173.03 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=41.2
Q ss_pred CCceEEEEcCC-Ccchh-hhhhhcCCC-CCceEEeecCC-Cc--ccccccccCCCCCcEEEccCCCCCC-ccCCCCCCCC
Q 048829 699 PSVKVLDVYGC-PKLES-IAERLDNNT-SLETINISNCE-NL--KILSSGLHNLCQLQQIGIGGCGNLE-SFPEGGLPCA 771 (976)
Q Consensus 699 ~~L~~L~L~~~-~~~~~-~~~~~~~l~-~L~~L~l~~c~-~l--~~lp~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~ 771 (976)
++|++|++++| .+.+. ++..+..++ +|++|++++|. .+ ..+|..+..+++|++|++++|..++ ..+..+..++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 44555555555 33332 344455555 55555555553 22 2334444455555555555554332 2333344455
Q ss_pred CccEEEecCCc
Q 048829 772 KLRRLEIYDCK 782 (976)
Q Consensus 772 ~L~~L~l~~c~ 782 (976)
+|++|++++|.
T Consensus 248 ~L~~L~l~~~~ 258 (336)
T 2ast_B 248 YLQHLSLSRCY 258 (336)
T ss_dssp TCCEEECTTCT
T ss_pred CCCEeeCCCCC
Confidence 55555555554
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=2.3e-16 Score=171.71 Aligned_cols=108 Identities=17% Similarity=0.295 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccc--ccccccCCCCCcEEEccCCCCCCc--cCCCCCCCC-Cc
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKI--LSSGLHNLCQLQQIGIGGCGNLES--FPEGGLPCA-KL 773 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~-~L 773 (976)
++|++|++++|...+..+..+..+++|++|++++|..++. ++..+.++++|++|++++|..++. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 4455555555554445555555555555555555533332 344444555555555555533332 232233344 55
Q ss_pred cEEEecCCc-Cc--ccCCCcCCCCCccceEEEeCCC
Q 048829 774 RRLEIYDCK-RL--EALPKGLHNLTSLQQLTIIGGE 806 (976)
Q Consensus 774 ~~L~l~~c~-~l--~~~~~~l~~l~~L~~L~l~~~~ 806 (976)
++|++++|. .+ ..+|..+..+++|++|++++|.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 555555553 11 2233333444444444444433
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=5.5e-14 Score=145.28 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=84.9
Q ss_pred CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829 700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY 779 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (976)
..++++++++... .+|..+. +++++|++++|...+..+..+.++++|++|++++|......+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455555554332 2333222 345555555543333334445555555555555553222222233445555555555
Q ss_pred CCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCC
Q 048829 780 DCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDM 859 (976)
Q Consensus 780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 859 (976)
+|......+..+..+++|++|++++|.|+.++. ..+..+++|++|++++ +.+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~~l~~L~~L~Ls~--N~l 143 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS--------------------------GVFDRLTKLKELRLNT--NQL 143 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCS--SCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh--------------------------hHhccCCcccEEECcC--CcC
Confidence 555332222344555555555555555554443 2345555666666665 234
Q ss_pred ccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829 860 VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~ 914 (976)
..++... |..+++|+.|++++ +.++.+|. .+..+++|++|++++|+
T Consensus 144 ~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 144 QSIPAGA--------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHHH--------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 4444322 23556666666666 45555544 45556666666666644
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=6.5e-14 Score=160.23 Aligned_cols=188 Identities=18% Similarity=0.212 Sum_probs=131.0
Q ss_pred CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829 700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY 779 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (976)
+++.|++++|.+.+ +|..+ +++|++|++++| .++.+| ..+++|++|++++| .++.+|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 67888888877655 55544 367888888885 455677 34788888888888 5555776 433 88888888
Q ss_pred CCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCC
Q 048829 780 DCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDM 859 (976)
Q Consensus 780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 859 (976)
+|. ++.+|. .+++|+.|++++|.|+.++. .+++|+.|++++|.+.. .+ . +. ++|+.|++++ +.+
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~-lp----~-l~--~~L~~L~Ls~--N~L 192 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF-LP----E-LP--ESLEALDVST--NLL 192 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-CC----C-CC--TTCCEEECCS--SCC
T ss_pred CCc-CCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC-cc----h-hh--CCCCEEECcC--CCC
Confidence 887 455766 57888888888888888776 56788888888887765 22 2 33 7888888888 356
Q ss_pred ccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCCCCeEeecCCCCccccC
Q 048829 860 VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQNLTKLTLYDCPKLKYFP 920 (976)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~i~ 920 (976)
..+|. +.. ..+...+.|+.|++++ |.++.||..+..+++|+.|++++|+..+.+|
T Consensus 193 ~~lp~-~~~----~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 193 ESLPA-VPV----RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SSCCC-CC------------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred Cchhh-HHH----hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 67776 420 0001122338888888 6888888878788888888888866544433
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1e-13 Score=143.33 Aligned_cols=152 Identities=21% Similarity=0.267 Sum_probs=115.6
Q ss_pred CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccC-CCCCCCCCccE
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRR 775 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~ 775 (976)
+|+.++.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|. ++.+| ..+..+++|++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence 34789999999999999888899999999999999976555557778999999999999995 45555 45677899999
Q ss_pred EEecCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEE
Q 048829 776 LEIYDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLI 852 (976)
Q Consensus 776 L~l~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 852 (976)
|++++|. ++.+|. .+..+++|++|++++|.+..++.. +.+++|+.|++++|.+....+ ..+..+++|+.|++
T Consensus 112 L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l 186 (251)
T 3m19_A 112 LYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITL 186 (251)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEEC
T ss_pred EEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEe
Confidence 9999998 455554 568999999999999999988763 234556666666665554333 33455555555555
Q ss_pred ec
Q 048829 853 RG 854 (976)
Q Consensus 853 ~~ 854 (976)
++
T Consensus 187 ~~ 188 (251)
T 3m19_A 187 FG 188 (251)
T ss_dssp CS
T ss_pred eC
Confidence 55
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=6.1e-14 Score=148.08 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=107.4
Q ss_pred cCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeec
Q 048829 120 KLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNN 199 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 199 (976)
.+++|++|++++|.+..++ .+..+++|++|+|++|.+..+|. ++++++|++|++++ +.+..+|. ++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh-hccCCCCCEEEC
Confidence 6777778888887777774 47777888888888887777765 77788888888877 35666553 777788888888
Q ss_pred CCCCCccccccccCCCCCCceecceEecCCCCCCchhhhccccccCceEEeecCCCCChhhhhhhccCCCCCCceEEEEE
Q 048829 200 SNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEISKLENVKDVGNAKEARLDGKKNLKELLLRW 279 (976)
Q Consensus 200 ~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (976)
++|. +..+ ..++.+++|++|++..
T Consensus 120 ~~n~-i~~~-~~l~~l~~L~~L~l~~------------------------------------------------------ 143 (291)
T 1h6t_A 120 EHNG-ISDI-NGLVHLPQLESLYLGN------------------------------------------------------ 143 (291)
T ss_dssp TTSC-CCCC-GGGGGCTTCCEEECCS------------------------------------------------------
T ss_pred CCCc-CCCC-hhhcCCCCCCEEEccC------------------------------------------------------
Confidence 8776 5554 2455555555553211
Q ss_pred ccCCCCCCChhhhhHhhhccCCCCCCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceEE
Q 048829 280 TRSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLT 359 (976)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 359 (976)
+... .+..+..+++|+.|+++++....++. +.. +++|+.|++++|... .++.+..+++|+.|+
T Consensus 144 n~l~-------------~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~--l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 144 NKIT-------------DITVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHIS-DLRALAGLKNLDVLE 206 (291)
T ss_dssp SCCC-------------CCGGGGGCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCC-BCGGGTTCTTCSEEE
T ss_pred CcCC-------------cchhhccCCCCCEEEccCCccccchh-hcC--CCccCEEECCCCcCC-CChhhccCCCCCEEE
Confidence 1110 00122334555666666665555544 322 677777777777643 355677777888888
Q ss_pred EeCCC
Q 048829 360 VRGVS 364 (976)
Q Consensus 360 L~~~~ 364 (976)
+++|.
T Consensus 207 l~~n~ 211 (291)
T 1h6t_A 207 LFSQE 211 (291)
T ss_dssp EEEEE
T ss_pred CcCCc
Confidence 87753
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=2.3e-15 Score=167.00 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=61.3
Q ss_pred CCCCccceEEEeCCCCCC------cc-cCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCcc---
Q 048829 792 HNLTSLQQLTIIGGELPS------LE-EDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVS--- 861 (976)
Q Consensus 792 ~~l~~L~~L~l~~~~l~~------~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~--- 861 (976)
..+++|++|++++|.+.. ++ ....+++|+.|++++|.+........+..+..+++|++|++++| . +..
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~-i~~~~~ 261 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-L-LSARGA 261 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-C-CCHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC-C-CchhhH
Confidence 344455555555554441 11 12234455555555555431100000034567777777777773 2 221
Q ss_pred --CCCCCcccccCCCCCCccccceeeccccCCCcc-----ccccc-cCCCCCCeEeecCCCC
Q 048829 862 --FPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES-----LSSSI-VDLQNLTKLTLYDCPK 915 (976)
Q Consensus 862 --~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~l-~~l~~L~~L~l~~c~~ 915 (976)
++.... ...+++|++|++++| .++. +|..+ .++++|++|++++|+.
T Consensus 262 ~~l~~~l~-------~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 262 AAVVDAFS-------KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHH-------TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHh-------hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 121110 013678888888884 5555 77766 5688999999998653
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=7.3e-14 Score=147.50 Aligned_cols=166 Identities=19% Similarity=0.247 Sum_probs=83.0
Q ss_pred CCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEE
Q 048829 722 NTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLT 801 (976)
Q Consensus 722 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~ 801 (976)
+++|++|++++| .++.++ .+..+++|++|++++| .++.++. +..+++|++|++++|. ++.+| .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 334444444443 223332 2344455555555554 2333332 3444455555555544 23332 244555555555
Q ss_pred EeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCcccc
Q 048829 802 IIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASL 881 (976)
Q Consensus 802 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L 881 (976)
+++|.+..++....+++|+.|++++|.+... ..+..+++|+.|++++| .+..++. . ..+++|
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l~~L 180 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN--QISDIVP-L---------AGLTKL 180 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS--CCCCCGG-G---------TTCTTC
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCC--ccccchh-h---------cCCCcc
Confidence 5555555544444445555555555554433 12456666666666662 3333322 2 356666
Q ss_pred ceeeccccCCCccccccccCCCCCCeEeecCC
Q 048829 882 TSLSIAFFPNLESLSSSIVDLQNLTKLTLYDC 913 (976)
Q Consensus 882 ~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c 913 (976)
+.|++++ +.++.++ .+..+++|+.|++++|
T Consensus 181 ~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 181 QNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CEEECCS-SCCCBCG-GGTTCTTCSEEEEEEE
T ss_pred CEEECCC-CcCCCCh-hhccCCCCCEEECcCC
Confidence 7777766 4666665 3666677777777764
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=1.3e-15 Score=167.02 Aligned_cols=156 Identities=12% Similarity=0.018 Sum_probs=65.2
Q ss_pred CCceEEEEcCCCcchhhhhh----hcCC-CCCceEEeecCCCccccccc----ccC-CCCCcEEEccCCCCCC----ccC
Q 048829 699 PSVKVLDVYGCPKLESIAER----LDNN-TSLETINISNCENLKILSSG----LHN-LCQLQQIGIGGCGNLE----SFP 764 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~----~~~l-~~L~~L~l~~c~~l~~lp~~----~~~-l~~L~~L~l~~~~~l~----~~~ 764 (976)
++|++|++++|.+.+..+.. +..+ ++|++|++++|......+.. +.. .++|++|++++|..-. .++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 45566666666554443332 2333 55666666654432221211 222 2356666666552211 111
Q ss_pred CCCCCCC-CccEEEecCCcCcccCCC----cCCCC-CccceEEEeCCCCCCc-----ccC--CCCCccceeeecCCCCcc
Q 048829 765 EGGLPCA-KLRRLEIYDCKRLEALPK----GLHNL-TSLQQLTIIGGELPSL-----EED--GLPTNLHSLRIEGNMGIW 831 (976)
Q Consensus 765 ~~~~~~~-~L~~L~l~~c~~l~~~~~----~l~~l-~~L~~L~l~~~~l~~~-----~~~--~~~~~L~~L~l~~~~~~~ 831 (976)
..+..++ +|++|++++|......+. .+..+ ++|++|++++|.|... +.. ..+++|++|++++|.+..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 1112222 555555555553222222 22223 3555555555555541 110 112345555555554443
Q ss_pred chhhhcCCcccccCcccEEEEec
Q 048829 832 KSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 832 ~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
.........+..+++|++|++++
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEH
T ss_pred HHHHHHHHHHhcCCCccEEEecc
Confidence 32211112234444555555554
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=2.3e-13 Score=134.64 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=104.8
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|.+. .++ .+..+++|++|++++| .+..++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 57888888888766 444 5778888888888887 444443 6777888888888888555556667777888888888
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCC-CCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGE-LPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
++|......|..+..+++|++|++++|. +..++....+++|+.|++++|.+.... .+..+++|++|++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECB
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeC
Confidence 8888665566777888888888888876 777765555666777777776655422 245666666666666
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.46 E-value=2.8e-15 Score=166.25 Aligned_cols=226 Identities=15% Similarity=0.090 Sum_probs=164.1
Q ss_pred CCceEEEEcCCCcchhhh----hhhcCCCCCceEEeecCC--Ccc-cccccc-------cCCCCCcEEEccCCCCCC---
Q 048829 699 PSVKVLDVYGCPKLESIA----ERLDNNTSLETINISNCE--NLK-ILSSGL-------HNLCQLQQIGIGGCGNLE--- 761 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~l~~c~--~l~-~lp~~~-------~~l~~L~~L~l~~~~~l~--- 761 (976)
++|++|+|++|.+....+ ..+..+++|++|++++|. .+. .+|..+ ..+++|++|++++|..-.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 679999999998877644 457789999999999973 222 334444 689999999999995444
Q ss_pred -ccCCCCCCCCCccEEEecCCcCccc----CCCcCCCC---------CccceEEEeCCCCCC--ccc----CCCCCccce
Q 048829 762 -SFPEGGLPCAKLRRLEIYDCKRLEA----LPKGLHNL---------TSLQQLTIIGGELPS--LEE----DGLPTNLHS 821 (976)
Q Consensus 762 -~~~~~~~~~~~L~~L~l~~c~~l~~----~~~~l~~l---------~~L~~L~l~~~~l~~--~~~----~~~~~~L~~ 821 (976)
.+|..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+.. ++. ...+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 2555566789999999999985322 33334444 899999999999873 221 124679999
Q ss_pred eeecCCCCccchhhhc-CCcccccCcccEEEEeccCCCC-----ccCCCCCcccccCCCCCCccccceeeccccCCCcc-
Q 048829 822 LRIEGNMGIWKSMIER-GRGFHRFSSLRYLLIRGCDDDM-----VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES- 894 (976)
Q Consensus 822 L~l~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~~~-----~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~- 894 (976)
|++++|.+........ +..+..+++|++|++++| .+ ..+|... ..+++|+.|++++| .++.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l---------~~~~~L~~L~L~~n-~i~~~ 259 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIAL---------KSWPNLRELGLNDC-LLSAR 259 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHG---------GGCTTCCEEECTTC-CCCHH
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHH---------ccCCCcCEEECCCC-CCchh
Confidence 9999998874321100 036789999999999993 33 4444433 57899999999996 4554
Q ss_pred ----cccccc--CCCCCCeEeecCCCCccc-----cCCCC--CcccccceeecCCc
Q 048829 895 ----LSSSIV--DLQNLTKLTLYDCPKLKY-----FPEKG--LPSSLLQLRIYRCP 937 (976)
Q Consensus 895 ----l~~~l~--~l~~L~~L~l~~c~~l~~-----i~~~~--~~~~L~~L~i~~c~ 937 (976)
++..+. .+++|++|++++|. ++. ++... -.++|++|++++|+
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 455663 48999999999965 454 65532 13799999999986
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=7.8e-13 Score=130.83 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|.+.+..+..+..+++|++|++++|..++.+| .+..+++|++|++++| .++.++ .+..+++|++|++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEe
Confidence 445555555555555455555555555555555544344444 3444555555555555 233333 2333444444444
Q ss_pred cCCc
Q 048829 779 YDCK 782 (976)
Q Consensus 779 ~~c~ 782 (976)
++|+
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 4443
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=5.8e-13 Score=133.23 Aligned_cols=161 Identities=19% Similarity=0.191 Sum_probs=93.2
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRL 776 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L 776 (976)
++|++|++++|.+.+..+..+..+++|++|++++|. ++.+ +..+..+++|++|++++| .++.++.. +..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 567777777776665555556667777777777643 3333 334556666777777666 34444433 3456666666
Q ss_pred EecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccC
Q 048829 777 EIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCD 856 (976)
Q Consensus 777 ~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 856 (976)
++++|......+..+..+++|++|++++|.+..++. ..+..+++|++|+++++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------------------------~~~~~l~~L~~L~l~~N- 158 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--------------------------GVFDRLTSLQYIWLHDN- 158 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------------------------TTTTTCTTCCEEECCSC-
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH--------------------------HHhccCCCccEEEecCC-
Confidence 666665332222335566666666666665555443 33556667777777662
Q ss_pred CCCccCCCCCcccccCCCCCCccccceeeccccCCCccccccccCCCC
Q 048829 857 DDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSSSIVDLQN 904 (976)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~l~~l~~ 904 (976)
... ..+++|+.|+++.+..-+.+|..++.++.
T Consensus 159 ~~~----------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWD----------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBC----------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Cee----------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 110 24566777777775555677766665544
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=4.3e-15 Score=162.90 Aligned_cols=229 Identities=17% Similarity=0.137 Sum_probs=159.3
Q ss_pred CCCCCceEEEEcCCCcchhhh----hhhcCCC-CCceEEeecCCCcccccccccCC-----CCCcEEEccCCCCCCccC-
Q 048829 696 NLPPSVKVLDVYGCPKLESIA----ERLDNNT-SLETINISNCENLKILSSGLHNL-----CQLQQIGIGGCGNLESFP- 764 (976)
Q Consensus 696 ~~~~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~c~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~~~- 764 (976)
..+++|++|++++|.+.+..+ ..+..++ +|++|++++|......+..+..+ ++|++|++++|. ++..+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 455779999999999877666 7788898 89999999985554445555553 999999999995 44332
Q ss_pred CC----CCCC-CCccEEEecCCcCcccCCCc----CCC-CCccceEEEeCCCCCCcccC-------CCCCccceeeecCC
Q 048829 765 EG----GLPC-AKLRRLEIYDCKRLEALPKG----LHN-LTSLQQLTIIGGELPSLEED-------GLPTNLHSLRIEGN 827 (976)
Q Consensus 765 ~~----~~~~-~~L~~L~l~~c~~l~~~~~~----l~~-l~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~ 827 (976)
.. +..+ ++|++|++++|......+.. +.. .++|++|++++|.+...... ..+++|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 21 2233 79999999999943333322 344 36999999999998853321 23459999999999
Q ss_pred CCccchhhhcCCccccc-CcccEEEEeccCCCCcc-----CCCCCcccccCCCCCCccccceeeccccCCCccccc----
Q 048829 828 MGIWKSMIERGRGFHRF-SSLRYLLIRGCDDDMVS-----FPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS---- 897 (976)
Q Consensus 828 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~~~~~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~---- 897 (976)
.+....+......+..+ ++|++|++++| .+.. ++.... ...++|++|++++ +.++..+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~--------~~~~~L~~L~Ls~-N~l~~~~~~~l~ 246 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS--------SIPNHVVSLNLCL-NCLHGPSLENLK 246 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH--------HSCTTCCEEECCS-SCCCCCCHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh--------cCCCCceEEECcC-CCCCcHHHHHHH
Confidence 88766553222234556 59999999993 3443 222221 1246999999999 56766543
Q ss_pred -cccCCCCCCeEeecCCCCccccCC-------CCC--cccccceeecCCc
Q 048829 898 -SIVDLQNLTKLTLYDCPKLKYFPE-------KGL--PSSLLQLRIYRCP 937 (976)
Q Consensus 898 -~l~~l~~L~~L~l~~c~~l~~i~~-------~~~--~~~L~~L~i~~c~ 937 (976)
.+..+++|++|++++|. +..+.. ..+ .++|++|++++++
T Consensus 247 ~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 45778999999999965 222221 112 3679999999986
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1.2e-12 Score=149.92 Aligned_cols=177 Identities=25% Similarity=0.314 Sum_probs=143.9
Q ss_pred CCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEE
Q 048829 723 TSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTI 802 (976)
Q Consensus 723 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l 802 (976)
.+|+.|++++| .++.+|..+ +++|++|++++| .++.+| ..+++|+.|++++|. ++.+|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEEC
Confidence 38999999996 466688766 489999999999 566888 346899999999997 555887 655 9999999
Q ss_pred eCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccc
Q 048829 803 IGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLT 882 (976)
Q Consensus 803 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~ 882 (976)
++|.|+.+|. .+++|+.|++++|.+.. .+ . .+++|++|++++ +.+..+|. + . ++|+
T Consensus 128 s~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp----~---~l~~L~~L~Ls~--N~L~~lp~-l---------~--~~L~ 183 (571)
T 3cvr_A 128 DNNQLTMLPE--LPALLEYINADNNQLTM-LP----E---LPTSLEVLSVRN--NQLTFLPE-L---------P--ESLE 183 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSC-CC----C---CCTTCCEEECCS--SCCSCCCC-C---------C--TTCC
T ss_pred CCCcCCCCCC--cCccccEEeCCCCccCc-CC----C---cCCCcCEEECCC--CCCCCcch-h---------h--CCCC
Confidence 9999999887 78999999999999875 22 2 578999999999 35666776 4 2 8999
Q ss_pred eeeccccCCCccccccccCCCCC-------CeEeecCCCCccccCCCCC-cccccceeecCCcch
Q 048829 883 SLSIAFFPNLESLSSSIVDLQNL-------TKLTLYDCPKLKYFPEKGL-PSSLLQLRIYRCPLI 939 (976)
Q Consensus 883 ~L~l~~~~~l~~l~~~l~~l~~L-------~~L~l~~c~~l~~i~~~~~-~~~L~~L~i~~c~~l 939 (976)
.|++++ +.++.+|. +.. +| +.|++++ +.++.||.... .++|+.|++++|+.-
T Consensus 184 ~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 184 ALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp EEECCS-SCCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred EEECcC-CCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 999999 68889997 554 77 9999999 57888987422 579999999999753
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.7e-13 Score=142.14 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=36.3
Q ss_pred CCCCceeEeeccCCCCCCCccCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceEEEeCCC
Q 048829 304 HKNLEQFGICGYGGTKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGVS 364 (976)
Q Consensus 304 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 364 (976)
+++|+.|+++++....+| .+.. +++|+.|++++|...+. +.+..+++|+.|++++|.
T Consensus 127 l~~L~~L~Ls~N~i~~~~-~l~~--l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV-MLGF--LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTCCEEECTTSCCCBCG-GGGG--CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred cccccEEECCCCcCCCCh-HHcc--CCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 444555555555555544 2322 67777888877775443 667778888888888764
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=5.1e-13 Score=154.87 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=82.0
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
+.|+.|++++|.+... + .+..+++|+.|+|++|. +..++. +..+++|+.|+|++| .+..+| .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 5566666666654332 2 36666667777776653 333333 566666777777666 344444 3555666666666
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
++|. +..+ ..+..+++|+.|++++|.+..++....+++|+.|++++|.+....+ +..+++|+.|+|++
T Consensus 117 s~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 117 EHNG-ISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSK 184 (605)
T ss_dssp TTSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCS
T ss_pred cCCC-CCCC-ccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcC
Confidence 6666 3333 2456666666666666666665444455566666666665544322 44555566666655
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=6.8e-12 Score=127.16 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=67.4
Q ss_pred CccEEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829 772 KLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY 849 (976)
Q Consensus 772 ~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 849 (976)
+|++|++++|...+..|..+..+++|++|++++|.|..++.. ..+++|+.|++++|.+..... ..+..+++|++
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~ 116 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLKE 116 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh----hHhCcchhhCe
Confidence 444444444443333333444444444444444444444321 112333333333333332222 34567777777
Q ss_pred EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCC
Q 048829 850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~ 914 (976)
|++++ +.+..+|... ..+++|+.|++++ +.++.+|. .+..+++|+.|++++++
T Consensus 117 L~Ls~--N~l~~lp~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCC--NKLTELPRGI---------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCS--SCCCSCCTTG---------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EeccC--CcccccCccc---------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77777 3555666654 4667777777777 56666664 46667777777777754
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=2.2e-13 Score=141.26 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=72.1
Q ss_pred CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEec
Q 048829 700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIY 779 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 779 (976)
.+..++++++...+.. .+..+++|++|++++| .++.+| .+..+++|++|++++| .++.++. +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 3444555555443322 3445556666666664 344444 4555666666666665 3444443 4455566666666
Q ss_pred CCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 780 DCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
+|. ++.+|.... ++|+.|++++|.++.++....+++|+.|++++|.+.... .+..+++|++|++++
T Consensus 94 ~N~-l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 94 RNR-LKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSC-CSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTT
T ss_pred CCc-cCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh------HHccCCCCCEEECCC
Confidence 655 333433222 556666666655555544444555555555555544321 244455555555555
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=1.7e-12 Score=150.35 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=75.0
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|+.|+|++|.+.+..+ +..+++|+.|++++| .+..+| .+..+++|+.|++++|. +..++ .+..+++|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEEC
Confidence 556666666655544333 555566666666654 333333 45555666666666552 33332 2444556666666
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
++|. +..+ ..+..+++|+.|++++|.|..++....+++|+.|++++|.+.... .+..+++|+.|++++
T Consensus 139 s~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 139 GNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFS 206 (605)
T ss_dssp CSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCS
T ss_pred CCCc-cCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccC
Confidence 6655 3333 345555666666666655555544444555666666665554421 245555566666555
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=4.2e-12 Score=126.91 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=52.8
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|+.. ..+++|++|++
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~ 172 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSE 172 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHH
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHH
Confidence 45666666666655555555666667777777665333222334566667777777766432 23446667777
Q ss_pred cCCcCcccCCCcCCCCC
Q 048829 779 YDCKRLEALPKGLHNLT 795 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~ 795 (976)
+.|...+.+|..++.++
T Consensus 173 ~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHCTTTBBCTTSSBC
T ss_pred HHHhCCceeeccCcccc
Confidence 66666666666555443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=7.5e-12 Score=125.90 Aligned_cols=145 Identities=17% Similarity=0.268 Sum_probs=81.3
Q ss_pred eEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCccEEEecCCcCcccCCCcCCCCCccceEEEeCC
Q 048829 727 TINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLRRLEIYDCKRLEALPKGLHNLTSLQQLTIIGG 805 (976)
Q Consensus 727 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~ 805 (976)
.++.++ ..++.+|..+. ++|++|++++| .++.++. .+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 444444 34555555442 56666666666 3444443 4455666666777666644444566666677777777766
Q ss_pred CCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccce
Q 048829 806 ELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTS 883 (976)
Q Consensus 806 ~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 883 (976)
.|..++... .+++|++|++++|.+....+ ..+.++++|++|++++ +.+..++... |..+++|+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~--N~l~~~~~~~--------~~~l~~L~~ 156 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYD--NKLQTIAKGT--------FSPLRAIQT 156 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCSCCCTTT--------TTTCTTCCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCC--CcCCEECHHH--------HhCCCCCCE
Confidence 666665432 23455555555555444333 3466667777777776 3444444432 245666666
Q ss_pred eecccc
Q 048829 884 LSIAFF 889 (976)
Q Consensus 884 L~l~~~ 889 (976)
|+++++
T Consensus 157 L~L~~N 162 (220)
T 2v9t_B 157 MHLAQN 162 (220)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 666663
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=4.5e-12 Score=128.55 Aligned_cols=132 Identities=21% Similarity=0.269 Sum_probs=109.6
Q ss_pred CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccc-ccccCCCCCcEEEccCCCCCCccCCC-CCCCCCcc
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILS-SGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLR 774 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~ 774 (976)
++++|++|++++|.+.+..+..+..+++|++|++++|. ++.+| ..+..+++|++|++++| .++.++.. +..+++|+
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhC
Confidence 34789999999999998888999999999999999965 45554 55788999999999999 55666654 56789999
Q ss_pred EEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCcc
Q 048829 775 RLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIW 831 (976)
Q Consensus 775 ~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~ 831 (976)
+|++++|. +..+|..+..+++|++|++++|.|..++.. ..+++|+.|++++|+...
T Consensus 116 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 116 ELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp EEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred eEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999998 668898999999999999999999988764 335788888888887654
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.6e-12 Score=122.01 Aligned_cols=123 Identities=18% Similarity=0.158 Sum_probs=98.3
Q ss_pred CCccEeccccccCCCCCCCc-cccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccc-cchhhhccCC
Q 048829 92 QHLRTFLPVMLTDSSPGYLA-PSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRT-LPESVNKLYN 169 (976)
Q Consensus 92 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~-lp~~i~~L~~ 169 (976)
++|+.|.+.++. +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++++++
T Consensus 17 ~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 567777665542 22 24555444889999999999999887 788899999999999999987 7888888999
Q ss_pred ccEEecccccchhccc--hhhhccccCceeecCCCCCcccccc----ccCCCCCCceecc
Q 048829 170 LHSLLLEDCDRLKKLC--ADMGNLIKLHHLNNSNTDSLEETPL----GIGKLTCLQTLCN 223 (976)
Q Consensus 170 L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~ 223 (976)
|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|++|++
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 999999994 677765 678999999999999997 777776 4888888888864
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=2.5e-12 Score=140.61 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=121.9
Q ss_pred CCCCceEEEEcCCCcchhhhhhhc-CCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCC-CCCCCCCcc
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLD-NNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPE-GGLPCAKLR 774 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~ 774 (976)
+|+.++.|+|++|.+.+..+..+. .+++|++|++++|......+..+.++++|++|++++|. ++.++. .+..+++|+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 346789999999988887777777 89999999999965444445678899999999999994 555654 467789999
Q ss_pred EEEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC-----CCCccceeeecCCCCccchhhhcCCcccccCc--c
Q 048829 775 RLEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG-----LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSS--L 847 (976)
Q Consensus 775 ~L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L 847 (976)
+|++++|......|..+..+++|+.|++++|.|..++... .+++|+.|++++|.+..... ..+..++. |
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~~~l 191 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL----TDLQKLPAWVK 191 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH----HHHHHSCHHHH
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH----HHhhhccHhhc
Confidence 9999999866556778899999999999999999887653 37889999999988876554 34666776 4
Q ss_pred cEEEEec
Q 048829 848 RYLLIRG 854 (976)
Q Consensus 848 ~~L~l~~ 854 (976)
+.|++++
T Consensus 192 ~~l~l~~ 198 (361)
T 2xot_A 192 NGLYLHN 198 (361)
T ss_dssp TTEECCS
T ss_pred ceEEecC
Confidence 7888887
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=6.1e-12 Score=126.53 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=104.9
Q ss_pred CCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccE
Q 048829 697 LPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRR 775 (976)
Q Consensus 697 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~ 775 (976)
+|++++.|++++|.+.+..+..+..+++|++|++++|......|..+.++++|++|++++| .++.+|.. +..+++|++
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCE
Confidence 3468999999999888777778899999999999997655555888899999999999998 56667665 456889999
Q ss_pred EEecCCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCc
Q 048829 776 LEIYDCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGI 830 (976)
Q Consensus 776 L~l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~ 830 (976)
|++++|......|..+..+++|+.|++++|.|+.++... .+++|+.|++++|+..
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999865555678888999999999999888877532 3456666666666653
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.9e-12 Score=123.18 Aligned_cols=127 Identities=21% Similarity=0.154 Sum_probs=96.0
Q ss_pred CCccEeccccccCCCCCCCc-cccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccc-cchhhhccCC
Q 048829 92 QHLRTFLPVMLTDSSPGYLA-PSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRT-LPESVNKLYN 169 (976)
Q Consensus 92 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~-lp~~i~~L~~ 169 (976)
++|+.|.+.++. +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.+.. +|..++++++
T Consensus 24 ~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 567777665542 12 24444444888888888888888877 778888888888888888887 6777778888
Q ss_pred ccEEecccccchhccc--hhhhccccCceeecCCCCCcccccc----ccCCCCCCceecceEec
Q 048829 170 LHSLLLEDCDRLKKLC--ADMGNLIKLHHLNNSNTDSLEETPL----GIGKLTCLQTLCNFVVG 227 (976)
Q Consensus 170 L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~lp~----~i~~L~~L~~L~~~~~~ 227 (976)
|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|++|++..+.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 888888884 677766 568888888888888887 777776 58888888888665443
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=6.3e-12 Score=137.41 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=59.3
Q ss_pred eEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCccccccccc-CCCCCcEEEccCCCCCCccC-CCCCCCCCccEEEec
Q 048829 702 KVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLH-NLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRLEIY 779 (976)
Q Consensus 702 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~ 779 (976)
+.++++++.+. .+|..+. ..++.|++++|......+..+. ++++|++|++++| .++.++ ..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 35555555432 2343322 2356666666432222233343 5566666666665 333333 234555566666666
Q ss_pred CCcCcccCCCcCCCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCc
Q 048829 780 DCKRLEALPKGLHNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGI 830 (976)
Q Consensus 780 ~c~~l~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~ 830 (976)
+|......+..+..+++|++|++++|.|..++... .+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 65532222234555566666666665555543321 2344444444444443
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=1.9e-11 Score=123.01 Aligned_cols=110 Identities=12% Similarity=0.170 Sum_probs=64.7
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEe
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEI 778 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 778 (976)
++|++|++++|.+.+..+..+.++++|++|++++|......+..+.++++|++|++++|......|..+..+++|++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 45666666666655555556666666666666665443333445666666666666666433333445555666666666
Q ss_pred cCCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829 779 YDCKRLEALPKGLHNLTSLQQLTIIGGELP 808 (976)
Q Consensus 779 ~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~ 808 (976)
++|...+..|..+..+++|++|++++|.+.
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 666644444556666666666666665554
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=6.2e-12 Score=126.50 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=104.3
Q ss_pred CCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCcccccc-ccccCCCcccEEecCCCCccccch-hhhccC
Q 048829 92 QHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISELP-DSVGDLRYLRYLNLSGTNIRTLPE-SVNKLY 168 (976)
Q Consensus 92 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~ 168 (976)
+.++.|.+.++. +....+..+| .+++|++|+|++|.|+.++ ..|..+++|++|+|++|.+..+|. .|++++
T Consensus 32 ~~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp TTCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 456778776553 2222245556 9999999999999999884 589999999999999999998855 589999
Q ss_pred CccEEecccccchhcc-chhhhccccCceeecCCCCCcccc-ccccCCCCCCceecceEecC
Q 048829 169 NLHSLLLEDCDRLKKL-CADMGNLIKLHHLNNSNTDSLEET-PLGIGKLTCLQTLCNFVVGK 228 (976)
Q Consensus 169 ~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~~~~~ 228 (976)
+|++|+|++| .+..+ |..|..+++|++|++++|. +..+ |..+..+++|++|++.....
T Consensus 106 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 106 SLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999994 66666 6679999999999999998 7777 55699999999997654443
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=4.4e-12 Score=122.78 Aligned_cols=130 Identities=20% Similarity=0.168 Sum_probs=107.3
Q ss_pred ccccCCCCccEeccccccCCCCCCCccccccccccCC-cccEEEccCCccccccccccCCCcccEEecCCCCccccchhh
Q 048829 86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQ-RLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESV 164 (976)
Q Consensus 86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i 164 (976)
..+.++++|+.|.+.++.- ..+ +.+..+. +|++|++++|.++.+ ..|+.+++|++|+|++|.|..+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l-------~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI-------PVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSCC-------CSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCCC-------chh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 3456778899998876632 233 4566444 999999999999988 78999999999999999999997654
Q ss_pred -hccCCccEEecccccchhccch--hhhccccCceeecCCCCCccccccc----cCCCCCCceecceEe
Q 048829 165 -NKLYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLNNSNTDSLEETPLG----IGKLTCLQTLCNFVV 226 (976)
Q Consensus 165 -~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~----i~~L~~L~~L~~~~~ 226 (976)
+.+++|++|++++ +.+..+|. .++.+++|++|++++|. +..+|.. ++.+++|++|+...+
T Consensus 84 ~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 84 DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 8999999999999 57888887 78999999999999998 8888875 889999999975543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=4e-12 Score=151.50 Aligned_cols=152 Identities=19% Similarity=0.191 Sum_probs=98.5
Q ss_pred cceeEEEeecccccCCcccccccCCCCccEeccccccCCCCCCCccccccccc-cCCcccEEEccCCccccccccccCCC
Q 048829 67 RYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLL-KLQRLRVFSLRGYHISELPDSVGDLR 145 (976)
Q Consensus 67 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~i~~lp~~~~~L~ 145 (976)
.+++++++..+.... .........+|+.+.+.+... ..+ ...++++.+ .++.|++|+|++|.+..+|..+..++
T Consensus 173 ~~~~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~-~~n--~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE--ANQALLQHKKLSQYSIDEDDD-IEN--RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYD 247 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCC
T ss_pred CccceEEeeCCCCCc--chhhHhhcCccCcccccCccc-ccc--ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCC
Confidence 457777775554322 112233444455544333211 011 123556666 99999999999999999999999999
Q ss_pred cccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCCCCccccccccCCCCCCceecceE
Q 048829 146 YLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFV 225 (976)
Q Consensus 146 ~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~ 225 (976)
+|++|+|++|.|..+|..|++|++|++|+|++ +.+..+|..|++|++|++|+|++|. +..+|.+|++|++|++|++..
T Consensus 248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCC
Confidence 99999999999999999999999999999999 5788999999999999999999998 899999999999999996543
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=121.70 Aligned_cols=110 Identities=22% Similarity=0.346 Sum_probs=87.9
Q ss_pred ccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccc-hhhhccCCccEEecccccchhccch-hhhc
Q 048829 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGN 190 (976)
Q Consensus 113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~ 190 (976)
.+|..++ +.|++|+|++|.++.+|..|..+++|++|+|++|.|+.+| ..|.++++|++|+|++ +.+..+|. .|++
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDG 100 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTT
T ss_pred cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCC
Confidence 4454443 4788889999988888888888999999999999888885 5688899999999988 46777754 4888
Q ss_pred cccCceeecCCCCCccccccc-cCCCCCCceecceEe
Q 048829 191 LIKLHHLNNSNTDSLEETPLG-IGKLTCLQTLCNFVV 226 (976)
Q Consensus 191 L~~L~~L~l~~~~~~~~lp~~-i~~L~~L~~L~~~~~ 226 (976)
+++|++|++++|. +..+|.+ +..+++|++|++..+
T Consensus 101 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 8999999999888 8888876 788888888865443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=1.1e-11 Score=119.09 Aligned_cols=138 Identities=25% Similarity=0.210 Sum_probs=112.0
Q ss_pred ccccceeEEEeecccccCCcccccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCcccc-cccccc
Q 048829 64 SFSRYLRHLSYIPEYYVGGKRFGDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISE-LPDSVG 142 (976)
Q Consensus 64 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~~~ 142 (976)
..+.+++++.+..+.+........+..+++|+.|.+.++.- ..+ ..+..+++|++|++++|.++. +|..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-------~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-------ISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-------CCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-------CCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 34577899999877654111123357889999998876642 233 445599999999999999998 688888
Q ss_pred CCCcccEEecCCCCccccc--hhhhccCCccEEecccccchhccch----hhhccccCceeecCCCCCccccccc
Q 048829 143 DLRYLRYLNLSGTNIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA----DMGNLIKLHHLNNSNTDSLEETPLG 211 (976)
Q Consensus 143 ~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~~~lp~~ 211 (976)
.+++|++|+|++|.+..+| ..++.+++|++|++++ +.+..+|. .+..+++|++|++++|. ..++|.+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 8999999999999999986 7899999999999999 47888876 68999999999999998 7777754
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=1.2e-11 Score=116.03 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=92.7
Q ss_pred cCCcccEEEccCCccc--cccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhc-cchhhhccccCce
Q 048829 120 KLQRLRVFSLRGYHIS--ELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKK-LCADMGNLIKLHH 196 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~--~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~ 196 (976)
..++|++|++++|.++ .+|..++.+++|++|++++|.+..+ ..++++++|++|++++| .+.. +|..++++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 5578999999999998 7899999999999999999999988 88999999999999995 5666 8888889999999
Q ss_pred eecCCCCCccccc--cccCCCCCCceecceEe
Q 048829 197 LNNSNTDSLEETP--LGIGKLTCLQTLCNFVV 226 (976)
Q Consensus 197 L~l~~~~~~~~lp--~~i~~L~~L~~L~~~~~ 226 (976)
|++++|. +..+| ..++.+++|++|++...
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence 9999998 88776 67999999999965443
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=4.6e-11 Score=117.28 Aligned_cols=110 Identities=17% Similarity=0.249 Sum_probs=72.8
Q ss_pred ccccccccCCcccEEEccCCccccccc--cccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-h
Q 048829 113 SILPKLLKLQRLRVFSLRGYHISELPD--SVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-M 188 (976)
Q Consensus 113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~--~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i 188 (976)
.+|..++. .|++|++++|.++.++. .|+.+++|++|+|++|.|+.+ |..|+++.+|++|+|++ +.+..+|.. |
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~ 98 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMF 98 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSS
T ss_pred cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHh
Confidence 44444433 67777777777776654 267777777777777777766 56677777777777777 355555443 6
Q ss_pred hccccCceeecCCCCCcccc-ccccCCCCCCceecceEe
Q 048829 189 GNLIKLHHLNNSNTDSLEET-PLGIGKLTCLQTLCNFVV 226 (976)
Q Consensus 189 ~~L~~L~~L~l~~~~~~~~l-p~~i~~L~~L~~L~~~~~ 226 (976)
+++++|++|++++|. +..+ |..++.+++|++|++...
T Consensus 99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence 777777777777777 5544 445777777777754433
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.4e-10 Score=113.80 Aligned_cols=93 Identities=23% Similarity=0.327 Sum_probs=77.7
Q ss_pred cEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccch-hhhccccCceeecCCCC
Q 048829 125 RVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSNTD 203 (976)
Q Consensus 125 r~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 203 (976)
++++++++.++.+|..+. ++|++|+|++|.|+.+|..|.++++|++|+|++ +.+..++. .|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998765 689999999999999999999999999999999 57777764 59999999999999998
Q ss_pred Cccccccc-cCCCCCCcee
Q 048829 204 SLEETPLG-IGKLTCLQTL 221 (976)
Q Consensus 204 ~~~~lp~~-i~~L~~L~~L 221 (976)
+..++.. |+.+++|++|
T Consensus 90 -l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEE
T ss_pred -cCEeCHHHhCCCCCCCEE
Confidence 6666543 5555544444
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=5.3e-11 Score=137.13 Aligned_cols=102 Identities=24% Similarity=0.248 Sum_probs=89.4
Q ss_pred cccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccccCceeecCCC
Q 048829 123 RLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNT 202 (976)
Q Consensus 123 ~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 202 (976)
.|++|+|++|.++.+|. |+.+++|++|+|++|.|..+|..|+++++|++|+|++ +.+..+| .+++|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCC
Confidence 58899999999999887 9999999999999999999999999999999999999 5788888 8999999999999999
Q ss_pred CCcccc--ccccCCCCCCceecceEecC
Q 048829 203 DSLEET--PLGIGKLTCLQTLCNFVVGK 228 (976)
Q Consensus 203 ~~~~~l--p~~i~~L~~L~~L~~~~~~~ 228 (976)
. +..+ |..++.|++|++|++..+..
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 8 7777 77899999999997655443
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.1e-10 Score=125.79 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=70.1
Q ss_pred CCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccc-eeeccccCCCcc
Q 048829 816 PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLT-SLSIAFFPNLES 894 (976)
Q Consensus 816 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~ 894 (976)
+++|+.+++.+|.+..... ..|.++++|+.|++.+ + +..++... |..+++|+ .+++.+ .++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~-n--i~~I~~~a--------F~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPH-N--LKTIGQRV--------FSNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCT-T--CCEECTTT--------TTTCTTCCEEEEECT--TCCE
T ss_pred cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCc-c--cceehHHH--------hhCChhccEEEEEcc--cceE
Confidence 5678888888777655444 5688888888888877 2 66666554 57788888 888887 6777
Q ss_pred ccc-cccCCCCCCeEeecCCCCccccCCCCCc--ccccce
Q 048829 895 LSS-SIVDLQNLTKLTLYDCPKLKYFPEKGLP--SSLLQL 931 (976)
Q Consensus 895 l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~--~~L~~L 931 (976)
|+. .|..+++|+.+++++ +.++.|+...+. ++|+.+
T Consensus 288 I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred EchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence 765 777788888888876 567777776662 344444
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.16 E-value=2.4e-09 Score=117.67 Aligned_cols=228 Identities=11% Similarity=0.135 Sum_probs=139.9
Q ss_pred CceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEEEe
Q 048829 700 SVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRLEI 778 (976)
Q Consensus 700 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l 778 (976)
+|+.+.+.. .....-..+|.+|++|+.+++.+ +.++.++......++|+.+.+..+ ++.++.. +..|++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 345555443 22222234566666777777765 344555433333566777776643 5555443 445667777777
Q ss_pred cCCcCcccCCC-cCCCCCccceEEEeCCCCCCcccCCC--CCccceeeecCCCCcc---chhhhcCCcccccCcccEEEE
Q 048829 779 YDCKRLEALPK-GLHNLTSLQQLTIIGGELPSLEEDGL--PTNLHSLRIEGNMGIW---KSMIERGRGFHRFSSLRYLLI 852 (976)
Q Consensus 779 ~~c~~l~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~---~~~~~~~~~~~~l~~L~~L~l 852 (976)
.++ +..++. .|.. .+|+.+.+ .+.+..++...+ +++|+.+++.++.... ....+ ..|.+|++|+.+++
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEI 307 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECC
T ss_pred CCC--ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEe
Confidence 653 444443 3333 56777766 344555544433 4667777776654430 01111 67899999999999
Q ss_pred eccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCC---Ccccc
Q 048829 853 RGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKG---LPSSL 928 (976)
Q Consensus 853 ~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L 928 (976)
.+ .+..++... |..+++|+.++|.. +++.|+. .|..+ +|+.+++.++ .+..++... +|.++
T Consensus 308 ~~---~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 308 PE---SIRILGQGL--------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp CT---TCCEECTTT--------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred CC---ceEEEhhhh--------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCc
Confidence 86 466666654 67899999999965 5888876 77788 9999999984 566666653 45788
Q ss_pred cceeecCCcchHHHHhccCCcccccccc
Q 048829 929 LQLRIYRCPLIEEKCRKDGGQYWDLLTH 956 (976)
Q Consensus 929 ~~L~i~~c~~l~~~~~~~~~~~~~~i~~ 956 (976)
+.|++-... .+.++.. ..|...+.
T Consensus 373 ~~l~vp~~~--~~~y~~a--~~W~~f~~ 396 (401)
T 4fdw_A 373 TVIRVPAES--VEKYKNA--NGWRDFTN 396 (401)
T ss_dssp CEEEECGGG--HHHHHHS--TTGGGGGG
T ss_pred cEEEeCHHH--HHHhhhc--cchhhhhh
Confidence 888886533 4555543 34877654
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=3.2e-11 Score=143.74 Aligned_cols=119 Identities=25% Similarity=0.343 Sum_probs=102.9
Q ss_pred ccccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhh
Q 048829 86 GDLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVN 165 (976)
Q Consensus 86 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~ 165 (976)
..+..++.|++|.+.++. ...++..++++++|++|+|++|.|+.+|..|+.|++|++|+|++|.|+.+|..|+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~-------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ-------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp ----CCCCCCEEECTTSC-------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred hhhccCCCCcEEECCCCC-------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 346778999999887654 3478888889999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEecccccchhccchhhhccccCceeecCCCCCccc-cccccC
Q 048829 166 KLYNLHSLLLEDCDRLKKLCADMGNLIKLHHLNNSNTDSLEE-TPLGIG 213 (976)
Q Consensus 166 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~-lp~~i~ 213 (976)
+|++|++|+|++ +.+..+|..|++|++|++|+|++|. +.. +|..+.
T Consensus 291 ~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~ 337 (727)
T 4b8c_D 291 SCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILT 337 (727)
T ss_dssp GGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHH
T ss_pred CCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHh
Confidence 999999999999 5789999999999999999999998 554 444343
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=8e-10 Score=119.01 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=120.6
Q ss_pred cccccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCC--------CCCCcEEEEccCCCCCCCCCccc
Q 048829 533 SCRLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VAL--------PSKLKKIEIRECDALKSLPEPWM 602 (976)
Q Consensus 533 ~~~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~--------~~~L~~L~l~~~~~l~~l~~~~~ 602 (976)
.++|+.|+|++|..... ......++.++.+.+.. + .+|. ... +++|+++.+.+ .++.++...|
T Consensus 48 l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~-~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMA-N---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECT-T---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTT
T ss_pred hccCeEEecCcceeEEe-cCccccccccccccccc-c---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHh
Confidence 47888888888876511 00111222233344333 2 2333 223 57777777777 3677777666
Q ss_pred cCCCCcccEEEEecCCCCcccccccCCCCCcEEeeccCcCccccccccccccccccccCCCCcc-eEeecCCCCcccccc
Q 048829 603 CDTSSSLEILKIWDCHSLTYIAEVQLPLSLKRLDIQRCNKIRTLTVEEGIQSSSSRRYTSSLLE-NLAISSCPSLTCIFS 681 (976)
Q Consensus 603 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~ 681 (976)
.++++|+.+++.++. +..++...+....+...+.......... ...+..... .....|+ .+.+.....+...+.
T Consensus 121 -~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~-~~~i~~~~f--~~~~~L~~~i~~~~~~~l~~~~~ 195 (329)
T 3sb4_A 121 -KGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRF-KNRWEHFAF--IEGEPLETTIQVGAMGKLEDEIM 195 (329)
T ss_dssp -TTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHT-STTTTTSCE--EESCCCEEEEEECTTCCHHHHHH
T ss_pred -hcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhc-ccccccccc--ccccccceeEEecCCCcHHHHHh
Confidence 677788888887753 3344443222222222222211000000 000000000 0001122 222222111111000
Q ss_pred CCCcccccccccccCCCCCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCC
Q 048829 682 KNELPATLESLEVGNLPPSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNL 760 (976)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l 760 (976)
.. ..-+.+++.+.+.++-...........+++|+++++++|. ++.+ +..|.++++|+++++.++ +
T Consensus 196 ~~-----------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i 261 (329)
T 3sb4_A 196 KA-----------GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--L 261 (329)
T ss_dssp HT-----------TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--C
T ss_pred hc-----------ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--c
Confidence 00 0012455666665543222222222346777777777643 4444 445666777777777765 5
Q ss_pred CccCCC-CCCCCCcc-EEEecCCcCcccCC-CcCCCCCccceEEEeCCCCCCccc
Q 048829 761 ESFPEG-GLPCAKLR-RLEIYDCKRLEALP-KGLHNLTSLQQLTIIGGELPSLEE 812 (976)
Q Consensus 761 ~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~~~~~ 812 (976)
+.++.. +..|++|+ .+++.+ .++.++ ..|..+++|+.+++++|.++.++.
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 556553 45566777 777766 244544 466777777777776666666654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=5.8e-11 Score=114.84 Aligned_cols=106 Identities=25% Similarity=0.368 Sum_probs=91.8
Q ss_pred ccccCCcccEEEccCCccccccccccCCC-cccEEecCCCCccccchhhhccCCccEEecccccchhccchh-hhccccC
Q 048829 117 KLLKLQRLRVFSLRGYHISELPDSVGDLR-YLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKL 194 (976)
Q Consensus 117 ~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L 194 (976)
.+..+..|++|++++|.++.+|. +..+. +|++|++++|.+..+ ..++++++|++|++++ +.+..+|.. ++.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCC
Confidence 34488999999999999998865 55555 999999999999998 7899999999999999 578888866 4999999
Q ss_pred ceeecCCCCCcccccc--ccCCCCCCceecceEe
Q 048829 195 HHLNNSNTDSLEETPL--GIGKLTCLQTLCNFVV 226 (976)
Q Consensus 195 ~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~~~ 226 (976)
++|++++|. +..+|. .++.+++|++|++...
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC
Confidence 999999998 888887 6899999999865443
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=1.2e-10 Score=134.06 Aligned_cols=129 Identities=23% Similarity=0.293 Sum_probs=94.5
Q ss_pred ccccCCcccEEE-ccCCccccccc------cccCC--CcccEEecCCCCccccchhhhccCCccEEecccccchhccchh
Q 048829 117 KLLKLQRLRVFS-LRGYHISELPD------SVGDL--RYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD 187 (976)
Q Consensus 117 ~~~~l~~Lr~L~-Ls~~~i~~lp~------~~~~L--~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 187 (976)
.+..+++|+.|+ ++.+.+..++. .+..+ ..|++|+|++|.++.+|. |+++++|++|+|++ +.+..+|..
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~ 481 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPA 481 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGG
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCc-ccccccchh
Confidence 334888899888 66655443321 12221 268999999999999987 99999999999999 578899999
Q ss_pred hhccccCceeecCCCCCccccccccCCCCCCceecceEecCCCCCCchhhhccccccCceEEe
Q 048829 188 MGNLIKLHHLNNSNTDSLEETPLGIGKLTCLQTLCNFVVGKDSGSGLSELKLLMHLRGALEIS 250 (976)
Q Consensus 188 i~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~l~i~ 250 (976)
|++|++|++|++++|. +..+| .++++++|++|++..+..........+..++.|+ .+.+.
T Consensus 482 ~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~-~L~L~ 541 (567)
T 1dce_A 482 LAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV-LLNLQ 541 (567)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC-EEECT
T ss_pred hhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC-EEEec
Confidence 9999999999999998 88888 8999999999977655443321133444455554 44443
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=1.8e-10 Score=110.62 Aligned_cols=95 Identities=23% Similarity=0.313 Sum_probs=59.6
Q ss_pred cccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccchh-hhccCCccEEecccccchhccchh-h
Q 048829 112 PSILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-M 188 (976)
Q Consensus 112 ~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i 188 (976)
..+|..++ +.|++|+|++|.|+.+ |..|+++++|++|+|++|+|+.+|.. |+++++|++|+|++ +.+..+|.. |
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~ 101 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAF 101 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHh
Confidence 34444443 5666677777766666 55666677777777777776666554 46667777777766 456666554 6
Q ss_pred hccccCceeecCCCCCcccccc
Q 048829 189 GNLIKLHHLNNSNTDSLEETPL 210 (976)
Q Consensus 189 ~~L~~L~~L~l~~~~~~~~lp~ 210 (976)
+.+++|++|++++|. +...+.
T Consensus 102 ~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp TTCTTCSEEECCSSC-BCTTBG
T ss_pred ccccCCCEEEeCCCC-cccccc
Confidence 666777777776666 444443
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=1.8e-10 Score=110.61 Aligned_cols=101 Identities=20% Similarity=0.365 Sum_probs=89.8
Q ss_pred cEEEccCCccccccccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-hhccccCceeecCCC
Q 048829 125 RVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNT 202 (976)
Q Consensus 125 r~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 202 (976)
+++++++++++.+|..+. ++|++|+|++|.|..+ |..|+++++|++|+|++ +.+..+|.. |+++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCC
Confidence 789999999999998775 8999999999999988 66899999999999999 588889876 689999999999999
Q ss_pred CCccccccc-cCCCCCCceecceEecCC
Q 048829 203 DSLEETPLG-IGKLTCLQTLCNFVVGKD 229 (976)
Q Consensus 203 ~~~~~lp~~-i~~L~~L~~L~~~~~~~~ 229 (976)
. +..+|.+ ++.+++|++|++..+...
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 8 8899987 999999999977655443
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=2.5e-10 Score=109.39 Aligned_cols=95 Identities=23% Similarity=0.383 Sum_probs=45.1
Q ss_pred cEEEccCCccccccccccCCCcccEEecCCCCcccc-chhhhccCCccEEecccccchhccchh-hhccccCceeecCCC
Q 048829 125 RVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNT 202 (976)
Q Consensus 125 r~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 202 (976)
++++++++.++.+|..+. ++|++|+|++|.|+.+ |..|+++++|++|+|++ +.+..+|.. |.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC
Confidence 344555555554444432 4455555555555544 33444555555555554 244444433 345555555555555
Q ss_pred CCccccccc-cCCCCCCceecc
Q 048829 203 DSLEETPLG-IGKLTCLQTLCN 223 (976)
Q Consensus 203 ~~~~~lp~~-i~~L~~L~~L~~ 223 (976)
. +..+|.+ ++++++|++|++
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEEC
T ss_pred c-cCEeCHHHhcCCCCCCEEEe
Confidence 4 4444443 444555554433
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=4.4e-10 Score=108.80 Aligned_cols=100 Identities=28% Similarity=0.448 Sum_probs=60.1
Q ss_pred CcccEEEccCCccccccc-cccCCCcccEEecCCCCccccchh-hhccCCccEEecccccchhccchh-hhccccCceee
Q 048829 122 QRLRVFSLRGYHISELPD-SVGDLRYLRYLNLSGTNIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLN 198 (976)
Q Consensus 122 ~~Lr~L~Ls~~~i~~lp~-~~~~L~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 198 (976)
+.|++|++++|.++.+|. .|+.+++|++|++++|.+..+|.. ++++++|++|++++ +.+..+|.. ++++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEEE
Confidence 456666666666665533 346666666666666666666433 46666666666666 355555543 56666666666
Q ss_pred cCCCCCccccccc-cCCCCCCceecc
Q 048829 199 NSNTDSLEETPLG-IGKLTCLQTLCN 223 (976)
Q Consensus 199 l~~~~~~~~lp~~-i~~L~~L~~L~~ 223 (976)
+++|. +..+|.. +..+++|++|++
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEe
Confidence 66665 5566655 455666666644
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=9.5e-12 Score=123.06 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=89.9
Q ss_pred ccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhccCCccEEecccccchhccchhhhccc
Q 048829 113 SILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLI 192 (976)
Q Consensus 113 ~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 192 (976)
.++..+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|..++.+++|++|++++ +.+..+| .+++++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIEKLV 115 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-HHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-ccccCC
Confidence 33445558999999999999998888 88899999999999999999988888889999999998 4777777 688999
Q ss_pred cCceeecCCCCCcccccc--ccCCCCCCceecce
Q 048829 193 KLHHLNNSNTDSLEETPL--GIGKLTCLQTLCNF 224 (976)
Q Consensus 193 ~L~~L~l~~~~~~~~lp~--~i~~L~~L~~L~~~ 224 (976)
+|++|++++|. +..+|. .+..+++|++|++.
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEEC
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEec
Confidence 99999999988 777665 58888888888543
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=6.8e-10 Score=108.84 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=65.9
Q ss_pred CCceEEEEcCCCcchhhhh-hhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829 699 PSVKVLDVYGCPKLESIAE-RLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (976)
+++++|++++|.+.+..+. .+..+++|++|++++|...+..|..+.++++|++|++++|......+..+..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 4666777777665554443 366666677777766544444466666666666777666633333333355566666666
Q ss_pred ecCCcCcccCCCcCCCCCccceEEEeCCCCC
Q 048829 778 IYDCKRLEALPKGLHNLTSLQQLTIIGGELP 808 (976)
Q Consensus 778 l~~c~~l~~~~~~l~~l~~L~~L~l~~~~l~ 808 (976)
+++|...+..|..+..+++|++|++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6666655555566666666666666666555
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.3e-11 Score=122.06 Aligned_cols=125 Identities=21% Similarity=0.229 Sum_probs=105.2
Q ss_pred cccCCCCccEeccccccCCCCCCCccccccccccCCcccEEEccCCccccccccccCCCcccEEecCCCCccccchhhhc
Q 048829 87 DLYDIQHLRTFLPVMLTDSSPGYLAPSILPKLLKLQRLRVFSLRGYHISELPDSVGDLRYLRYLNLSGTNIRTLPESVNK 166 (976)
Q Consensus 87 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~ 166 (976)
.+..+++|+.|.+.++.- ..++ .+..+++|++|++++|.++.+|..+..+++|++|+|++|.+..+| .+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l-------~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-------EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-------SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCCC-------cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 567889999998876632 3344 555999999999999999999998899999999999999999987 7999
Q ss_pred cCCccEEecccccchhccch--hhhccccCceeecCCCCCccccccc-----------cCCCCCCceec
Q 048829 167 LYNLHSLLLEDCDRLKKLCA--DMGNLIKLHHLNNSNTDSLEETPLG-----------IGKLTCLQTLC 222 (976)
Q Consensus 167 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~-----------i~~L~~L~~L~ 222 (976)
+++|++|++++ +.+..+|. .+..+++|++|++++|. +...++. +..+++|++|+
T Consensus 114 l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999999 57887765 68999999999999998 5444322 78888888886
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=6e-10 Score=106.66 Aligned_cols=94 Identities=27% Similarity=0.363 Sum_probs=80.8
Q ss_pred cccccccccCCcccEEEccCCccccc-cccccCCCcccEEecCCCCccccchh-hhccCCccEEecccccchhccchh-h
Q 048829 112 PSILPKLLKLQRLRVFSLRGYHISEL-PDSVGDLRYLRYLNLSGTNIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-M 188 (976)
Q Consensus 112 ~~~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i 188 (976)
..+|..++ +.|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |.++++|++|+|++ +.+..+|.. |
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~ 98 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAF 98 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHh
Confidence 34555553 7899999999999988 77899999999999999999999765 68999999999999 578888775 8
Q ss_pred hccccCceeecCCCCCccccc
Q 048829 189 GNLIKLHHLNNSNTDSLEETP 209 (976)
Q Consensus 189 ~~L~~L~~L~l~~~~~~~~lp 209 (976)
+++++|++|++++|. +...+
T Consensus 99 ~~l~~L~~L~L~~N~-~~c~c 118 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP-WDCAC 118 (170)
T ss_dssp TTCTTCCEEECCSSC-BCTTB
T ss_pred cCCCCCCEEEeCCCC-CCCCc
Confidence 999999999999998 55443
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.95 E-value=3e-08 Score=108.88 Aligned_cols=189 Identities=11% Similarity=0.094 Sum_probs=133.8
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (976)
++|+.+++.+|........+|. +++|+.+.+.+ .++.+ ...|.++++|+.+++..+ ++.++...+.-.+|+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVK 254 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEE
Confidence 6778888877765554444555 68899998875 35555 567778889999999864 677776655557899999
Q ss_pred ecCCcCcccCC-CcCCCCCccceEEEeCCCCC-----CcccCCC--CCccceeeecCCCCccchhhhcCCcccccCcccE
Q 048829 778 IYDCKRLEALP-KGLHNLTSLQQLTIIGGELP-----SLEEDGL--PTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRY 849 (976)
Q Consensus 778 l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~-----~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 849 (976)
+.++ ++.++ ..|..+++|+.+.+.++.+. .++...+ +++|+.+++.++ ...... ..|.+|++|+.
T Consensus 255 lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~----~aF~~c~~L~~ 327 (401)
T 4fdw_A 255 LPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQ----GLLGGNRKVTQ 327 (401)
T ss_dssp EETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECT----TTTTTCCSCCE
T ss_pred eCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhh----hhhcCCCCccE
Confidence 9543 55554 47788999999999886654 4554433 678999988843 332222 67899999999
Q ss_pred EEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCC-CCCeEeecC
Q 048829 850 LLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQ-NLTKLTLYD 912 (976)
Q Consensus 850 L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~-~L~~L~l~~ 912 (976)
+++.. .+..+.... |..+ +|+.+++.+ +.+..++. .+..++ +++.|++..
T Consensus 328 l~lp~---~l~~I~~~a--------F~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 328 LTIPA---NVTQINFSA--------FNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EEECT---TCCEECTTS--------SSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EEECc---cccEEcHHh--------CCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence 99976 355665543 5778 999999999 56666655 555564 678888765
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=3.9e-09 Score=102.08 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=54.2
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRL 776 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L 776 (976)
++|++|++++|.+.+..+..+..+++|++|++++|. ++.+ +..+..+++|++|++++| .++.+|.. +..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 456666666665554444445556666666666543 3333 333455556666666655 33333332 3445555555
Q ss_pred EecCCcCcccCCCc-CCCCCccceEEEeCCCCC
Q 048829 777 EIYDCKRLEALPKG-LHNLTSLQQLTIIGGELP 808 (976)
Q Consensus 777 ~l~~c~~l~~~~~~-l~~l~~L~~L~l~~~~l~ 808 (976)
++++|. ++.+|.. +..+++|++|++++|.+.
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 555554 3333332 344555555555555444
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=1.7e-08 Score=109.58 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=45.3
Q ss_pred cccccccCCcccEEEccC-Ccccccc-ccccCCCcccEEecCCCCccccc-hhhhccCCccEEecccccchhccchhhhc
Q 048829 114 ILPKLLKLQRLRVFSLRG-YHISELP-DSVGDLRYLRYLNLSGTNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGN 190 (976)
Q Consensus 114 ~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 190 (976)
+|. +..+++|++|+|++ |.++.+| ..|++|++|++|+|++|.|..+| ..|++|++|++|+|++ |.+..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcc
Confidence 444 33555555555553 5555553 44555555555555555555542 3455555555555555 345555544222
Q ss_pred cccCceeecCCCC
Q 048829 191 LIKLHHLNNSNTD 203 (976)
Q Consensus 191 L~~L~~L~l~~~~ 203 (976)
...|++|++.+|.
T Consensus 102 ~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLSGNP 114 (347)
T ss_dssp SCCCCEEECCSSC
T ss_pred cCCceEEEeeCCC
Confidence 2225555555554
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=6.7e-07 Score=98.72 Aligned_cols=206 Identities=15% Similarity=0.159 Sum_probs=114.1
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEE
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLE 777 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 777 (976)
.+|+.+.+.++- ......++.++++|+.+.+..+ ++.+ ...+.+++.|+.+.+..+ ...+......+.+|+.+.
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNII 236 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEE
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEE
Confidence 345555554321 1222345666777777777652 3333 445566677776666543 233444445556777777
Q ss_pred ecCCcCcccCC-CcCCCCCccceEEEeCCCCCCcccC--CCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEec
Q 048829 778 IYDCKRLEALP-KGLHNLTSLQQLTIIGGELPSLEED--GLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 778 l~~c~~l~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 854 (976)
+... ...+. ..+..+..|+.+.+..+.. .+... ..+..++.+......+ .+ ..+.++.+|+.+.+..
T Consensus 237 ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i-----~~--~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 237 IPDS--FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV-----PE--KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp ECTT--CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE-----CT--TTTTTCTTCCEEEECT
T ss_pred ECCC--ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee-----cc--cccccccccccccccc
Confidence 6543 23332 3456667777777655322 22222 2234555555543321 11 4566777777777765
Q ss_pred cCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCCc--ccccce
Q 048829 855 CDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGLP--SSLLQL 931 (976)
Q Consensus 855 c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~--~~L~~L 931 (976)
.+..+++.. |..+++|+.++|.. .++.|+. .|..+.+|+.+.+.. .++.|...++- ++|+++
T Consensus 307 ---~i~~I~~~a--------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 307 ---SVKFIGEEA--------FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371 (394)
T ss_dssp ---TCCEECTTT--------TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEE
T ss_pred ---ccceechhh--------hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEE
Confidence 244444432 56777777777754 4667755 666777777777764 26677666553 466666
Q ss_pred eec
Q 048829 932 RIY 934 (976)
Q Consensus 932 ~i~ 934 (976)
++.
T Consensus 372 ~lp 374 (394)
T 4fs7_A 372 ELP 374 (394)
T ss_dssp EEE
T ss_pred EEC
Confidence 664
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.64 E-value=6.2e-07 Score=99.00 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=35.0
Q ss_pred CcccccCcccEEEEeccCCCCccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeec
Q 048829 839 RGFHRFSSLRYLLIRGCDDDMVSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLY 911 (976)
Q Consensus 839 ~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~ 911 (976)
..|.++++|+.+++.. .+..+... +|..+++|+.+++.. .++.|+. .|..+++|+.+++.
T Consensus 314 ~aF~~c~~L~~i~lp~---~v~~I~~~--------aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPY---LVEEIGKR--------SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTTCTTCCEECCCT---TCCEECTT--------TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred hhhcCCCCCCEEEeCC---cccEEhHH--------hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 4566666666666654 24444433 245666777776654 3666654 56666667666664
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=5.2e-08 Score=105.78 Aligned_cols=101 Identities=17% Similarity=0.093 Sum_probs=84.4
Q ss_pred EEEccCC-ccccccccccCCCcccEEecCC-CCccccc-hhhhccCCccEEecccccchhccch-hhhccccCceeecCC
Q 048829 126 VFSLRGY-HISELPDSVGDLRYLRYLNLSG-TNIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLIKLHHLNNSN 201 (976)
Q Consensus 126 ~L~Ls~~-~i~~lp~~~~~L~~L~~L~L~~-n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 201 (976)
.++++++ +++.+|. |..+++|++|+|++ |.|..+| ..|++|.+|++|+|++| .+..+|. .|++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4588888 8999999 99999999999996 9999986 57999999999999995 6777755 589999999999999
Q ss_pred CCCccccccccCCCCCCceecceEecCC
Q 048829 202 TDSLEETPLGIGKLTCLQTLCNFVVGKD 229 (976)
Q Consensus 202 ~~~~~~lp~~i~~L~~L~~L~~~~~~~~ 229 (976)
|. +..+|..+.....|++|.+..+...
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred Cc-cceeCHHHcccCCceEEEeeCCCcc
Confidence 98 8899987444334998876655443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=8.1e-09 Score=112.28 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCceEEEEcCCCcchhhhhhh----c-CCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCC-----CC
Q 048829 699 PSVKVLDVYGCPKLESIAERL----D-NNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPE-----GG 767 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~----~-~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~-----~~ 767 (976)
+.|++|++++|.+.......+ . ..++|++|++++|.....- ......+++|++|++++|. ++.... ..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence 567888888887765443332 2 2267888888886543221 2222335678888888873 322111 11
Q ss_pred -CCCCCccEEEecCCcCcc----cCCCcCCCCCccceEEEeCCCCCCccc------CCCCCccceeeecCCCCccchhhh
Q 048829 768 -LPCAKLRRLEIYDCKRLE----ALPKGLHNLTSLQQLTIIGGELPSLEE------DGLPTNLHSLRIEGNMGIWKSMIE 836 (976)
Q Consensus 768 -~~~~~L~~L~l~~c~~l~----~~~~~l~~l~~L~~L~l~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~ 836 (976)
...++|++|++++|.... .++..+...++|++|++++|.|..... ...+++|+.|++++|.+.......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234678888888776321 233344556677777777776654221 112345556666555554332211
Q ss_pred cCCcccccCcccEEEEec
Q 048829 837 RGRGFHRFSSLRYLLIRG 854 (976)
Q Consensus 837 ~~~~~~~l~~L~~L~l~~ 854 (976)
....+...++|++|++++
T Consensus 231 l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 231 LARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHCSSCCEEECTT
T ss_pred HHHHHHhCCCCCEEeccC
Confidence 112233345555555555
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.34 E-value=1.5e-05 Score=87.90 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=54.1
Q ss_pred cccEEEeeccCCcccC-ccccCCCCCccEEEeecC--CCCCCCCCcCC--CCCCcEEEEccCCCCCCCCCccccCCCCcc
Q 048829 535 RLEYLRLRYCEGLVKL-PQSSLSLSSLKEIEIYKC--SSLVSFPEVAL--PSKLKKIEIRECDALKSLPEPWMCDTSSSL 609 (976)
Q Consensus 535 ~L~~L~L~~~~~l~~~-~~~~~~l~~L~~L~l~~c--~~l~~l~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 609 (976)
.|+.+.+... ++.+ ..+|.++++|+.+.+..+ ..++.+....+ +.+|+.+.+... ++.++...+ ..+.+|
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF-~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF-HHCEEL 139 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT-TTCTTC
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh-hhhccc
Confidence 4777777642 3333 336777888888888653 23555554333 566666555433 555555555 567777
Q ss_pred cEEEEecCCCCcccccc--cCCCCCcEEeec
Q 048829 610 EILKIWDCHSLTYIAEV--QLPLSLKRLDIQ 638 (976)
Q Consensus 610 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~ 638 (976)
+.+.+.. .+..++.. ..+.+|+.+.+.
T Consensus 140 ~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 140 DTVTIPE--GVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CEEECCT--TCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccc--eeeeecccceeccccccccccc
Confidence 7777754 23344333 223445555443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=4.4e-07 Score=97.53 Aligned_cols=168 Identities=17% Similarity=0.190 Sum_probs=86.0
Q ss_pred hhhhcCCCCCceEEeecCCC---------cccccccccCCCCCcEEEccCCCCCCccCCCCCCCCCccEEEecCCcCccc
Q 048829 716 AERLDNNTSLETINISNCEN---------LKILSSGLHNLCQLQQIGIGGCGNLESFPEGGLPCAKLRRLEIYDCKRLEA 786 (976)
Q Consensus 716 ~~~~~~l~~L~~L~l~~c~~---------l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 786 (976)
..++..+++|+.|.+.+... ...++..+..+|+|+.|.|++|..+ .++. ...++|+.|++..|.....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KPRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CBCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--ccCCCCcEEEEecCCCChH
Confidence 34455667788887754311 1123444556778888888777333 2333 2366788888877663222
Q ss_pred CCCcC--CCCCccceEEEeC--CCCC-CcccCCCCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCCcc
Q 048829 787 LPKGL--HNLTSLQQLTIIG--GELP-SLEEDGLPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDMVS 861 (976)
Q Consensus 787 ~~~~l--~~l~~L~~L~l~~--~~l~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~ 861 (976)
....+ ..+|+|+.|+|+. +... .... ..+. .. -....+|+|++|++++| .....
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~----~~l~-----------~~-----l~~~~~p~Lr~L~L~~~-~i~~~ 267 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDM----NVFR-----------PL-----FSKDRFPNLKWLGIVDA-EEQNV 267 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCG----GGTG-----------GG-----SCTTTCTTCCEEEEESC-TTHHH
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhH----HHHH-----------HH-----HhcCCCCCcCEEeCCCC-CCchH
Confidence 11122 3567777777753 1110 0000 0000 00 00124667777777663 11110
Q ss_pred CCCCCcccccCCCCCCccccceeeccccCCCcc-----ccccccCCCCCCeEeecCCC
Q 048829 862 FPPEPEDRRLGTTLPLPASLTSLSIAFFPNLES-----LSSSIVDLQNLTKLTLYDCP 914 (976)
Q Consensus 862 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~l~~l~~L~~L~l~~c~ 914 (976)
.+... ..+ ..+++|++|+|+. +.++. ++.++..+++|+.|++++|.
T Consensus 268 ~~~~l-----a~a-~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 268 VVEMF-----LES-DILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHH-----HHC-SSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHH-----HhC-ccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 00000 000 2467788888876 55654 44455677888888888763
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=0.00014 Score=79.92 Aligned_cols=195 Identities=13% Similarity=0.165 Sum_probs=112.4
Q ss_pred hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccC-CCCCCCCCccEEEecCCcCcccCCCcC----
Q 048829 717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFP-EGGLPCAKLRRLEIYDCKRLEALPKGL---- 791 (976)
Q Consensus 717 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~l---- 791 (976)
.++..+.+|+.+.+.+ .++.+........+|+.+.+... +..+. ..+..+.+++........ ...+...+
T Consensus 154 ~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~~~ 228 (394)
T 4gt6_A 154 GMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSES-YPAIDNVLYEKS 228 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEEEC
T ss_pred cceecccccccccccc--eeeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccc-cccccceeeccc
Confidence 4567778888888865 35555333333467888887654 23332 234556677776655433 11111111
Q ss_pred ----------CCCCccceEEEeCCCCCCcccCC--CCCccceeeecCCCCccchhhhcCCcccccCcccEEEEeccCCCC
Q 048829 792 ----------HNLTSLQQLTIIGGELPSLEEDG--LPTNLHSLRIEGNMGIWKSMIERGRGFHRFSSLRYLLIRGCDDDM 859 (976)
Q Consensus 792 ----------~~l~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 859 (976)
.....+..+.+. +.+..+.... .+.+|+.+.+.+.... .. . ..|.++++|+.+.+.. .+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~--I~-~--~aF~~c~~L~~i~l~~---~i 299 (394)
T 4gt6_A 229 ANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS--IG-T--GAFMNCPALQDIEFSS---RI 299 (394)
T ss_dssp TTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE--EC-T--TTTTTCTTCCEEECCT---TC
T ss_pred ccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce--ec-C--cccccccccccccCCC---cc
Confidence 011111222111 1222222222 2456777776543221 11 1 5677888888888865 45
Q ss_pred ccCCCCCcccccCCCCCCccccceeeccccCCCccccc-cccCCCCCCeEeecCCCCccccCCCCCc--ccccceeecCC
Q 048829 860 VSFPPEPEDRRLGTTLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYDCPKLKYFPEKGLP--SSLLQLRIYRC 936 (976)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~--~~L~~L~i~~c 936 (976)
..++... |..+++|+.++|.. .++.|.. .|..+.+|+.+.+.. .++.|...++- .+|+.+++.+.
T Consensus 300 ~~I~~~a--------F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 300 TELPESV--------FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEECTTT--------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred cccCcee--------ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 5555543 57888888888875 5777766 677888899888864 47788776664 57888888775
Q ss_pred c
Q 048829 937 P 937 (976)
Q Consensus 937 ~ 937 (976)
.
T Consensus 368 ~ 368 (394)
T 4gt6_A 368 R 368 (394)
T ss_dssp H
T ss_pred e
Confidence 4
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.17 E-value=1.3e-06 Score=93.98 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=28.0
Q ss_pred hhhcCCCCCceEEeecCCCcccccccccCCCCCcEEEccCCCCCCccCCCC--CCCCCccEEEec
Q 048829 717 ERLDNNTSLETINISNCENLKILSSGLHNLCQLQQIGIGGCGNLESFPEGG--LPCAKLRRLEIY 779 (976)
Q Consensus 717 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~L~~L~l~ 779 (976)
..+..+++|+.|++++|..+. ++. +. +++|++|++..|.........+ ..+|+|+.|+|+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 344555666666666553222 222 22 5666666666553211100001 135666666664
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.15 E-value=2.2e-07 Score=100.94 Aligned_cols=83 Identities=19% Similarity=0.214 Sum_probs=46.6
Q ss_pred cCCcccEEEccCCccccc-ccccc-----CCCcccEEecCCCCcccc-chh-hhccCCccEEecccccchhccc-hhh--
Q 048829 120 KLQRLRVFSLRGYHISEL-PDSVG-----DLRYLRYLNLSGTNIRTL-PES-VNKLYNLHSLLLEDCDRLKKLC-ADM-- 188 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~l-p~~~~-----~L~~L~~L~L~~n~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~lp-~~i-- 188 (976)
-++.|++|+|++|.++.. ...+. ..++|++|+|++|.+..- ... ...+.+|++|+|++| .+.... ..+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 345677777777776542 22222 225777777777776532 222 334667777777774 343221 122
Q ss_pred ---hccccCceeecCCCC
Q 048829 189 ---GNLIKLHHLNNSNTD 203 (976)
Q Consensus 189 ---~~L~~L~~L~l~~~~ 203 (976)
...++|++|++++|.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHHSTTCCCCEEECCSSC
T ss_pred HHHhcCCccceeeCCCCC
Confidence 134667777777776
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.13 E-value=0.0002 Score=78.28 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=39.3
Q ss_pred ccccEEEeeccCCcccCc-cccCCCCCccEEEeecCCCCCCCCCcCC-CCCCcEEEEccCCCCCCCCCccccCCCCcccE
Q 048829 534 CRLEYLRLRYCEGLVKLP-QSSLSLSSLKEIEIYKCSSLVSFPEVAL-PSKLKKIEIRECDALKSLPEPWMCDTSSSLEI 611 (976)
Q Consensus 534 ~~L~~L~L~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 611 (976)
.+|+.+.+.. .++.++ .+|.++.+|+.+.+.. .++.+....+ -.+|+.+.+.. .++.++...| ...+|+.
T Consensus 46 ~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c~l~~i~~~~--~l~~I~~~aF--~~~~L~~ 117 (379)
T 4h09_A 46 DRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADTKLQSYTGME--RVKKFGDYVF--QGTDLDD 117 (379)
T ss_dssp GGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCCCCEEEECT--TCCEECTTTT--TTCCCSE
T ss_pred cCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCCCCceEECCc--eeeEecccee--ccCCccc
Confidence 4555555543 233333 2566777777777753 3555554333 12455555543 2555555555 2235666
Q ss_pred EEEec
Q 048829 612 LKIWD 616 (976)
Q Consensus 612 L~l~~ 616 (976)
+.+.+
T Consensus 118 i~lp~ 122 (379)
T 4h09_A 118 FEFPG 122 (379)
T ss_dssp EECCT
T ss_pred ccCCC
Confidence 66643
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=0.00049 Score=75.23 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=41.4
Q ss_pred hcCCCCCceEEeecCCCcccc-cccccCCCCCcEEEccCCCCCCccCCC-CCCCCCccEEEecCCcCcccCCC-cCCCCC
Q 048829 719 LDNNTSLETINISNCENLKIL-SSGLHNLCQLQQIGIGGCGNLESFPEG-GLPCAKLRRLEIYDCKRLEALPK-GLHNLT 795 (976)
Q Consensus 719 ~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~-~l~~l~ 795 (976)
+..+.+|+.+.+.. .+..+ ...+.++..|+.+.+..+ ++.+... +..+.+|+.+.+... ++.++. .+..++
T Consensus 213 f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCT
T ss_pred cccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceecccccccccc
Confidence 44455555555543 22222 334455566666666543 3444332 334555666655432 333332 345555
Q ss_pred ccceEEEeCCCCCCcc
Q 048829 796 SLQQLTIIGGELPSLE 811 (976)
Q Consensus 796 ~L~~L~l~~~~l~~~~ 811 (976)
+|+.+.+.++.++.++
T Consensus 287 ~L~~i~l~~~~i~~I~ 302 (379)
T 4h09_A 287 NLTKVVMDNSAIETLE 302 (379)
T ss_dssp TCCEEEECCTTCCEEC
T ss_pred ccccccccccccceeh
Confidence 5555555544444443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=2.5e-06 Score=79.76 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=63.5
Q ss_pred CCceEEEEcCCCcchhhhhhhcCCCCCceEEeecCCCcccc-cccccC----CCCCcEEEccCCCCCCccC-CCCCCCCC
Q 048829 699 PSVKVLDVYGCPKLESIAERLDNNTSLETINISNCENLKIL-SSGLHN----LCQLQQIGIGGCGNLESFP-EGGLPCAK 772 (976)
Q Consensus 699 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~----l~~L~~L~l~~~~~l~~~~-~~~~~~~~ 772 (976)
..|++||+++|.+...-...+.++++|++|++++|..+++- -..+.. .++|++|+|++|+.++.-. ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 36888999998877766667788999999999999887753 122332 2478999999998776421 11345788
Q ss_pred ccEEEecCCcCccc
Q 048829 773 LRRLEIYDCKRLEA 786 (976)
Q Consensus 773 L~~L~l~~c~~l~~ 786 (976)
|+.|++++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888886654
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=3.1e-06 Score=79.13 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=41.1
Q ss_pred cccEEEeeccCCcccCccccCCCCCccEEEeecCCCCCCCCC--cCC----CCCCcEEEEccCCCCCCCCCccccCCCCc
Q 048829 535 RLEYLRLRYCEGLVKLPQSSLSLSSLKEIEIYKCSSLVSFPE--VAL----PSKLKKIEIRECDALKSLPEPWMCDTSSS 608 (976)
Q Consensus 535 ~L~~L~L~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~----~~~L~~L~l~~~~~l~~l~~~~~~~~l~~ 608 (976)
.|+.|++++|.....--..+..+++|++|+|++|..+++-.- ... .++|++|++++|..+++-..... ..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCC
Confidence 566666666653332222345666677777777666553211 111 12455555555554444322222 23444
Q ss_pred ccEEEEecCCCCc
Q 048829 609 LEILKIWDCHSLT 621 (976)
Q Consensus 609 L~~L~l~~~~~l~ 621 (976)
|++|++++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 5555555444443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.5e-05 Score=80.80 Aligned_cols=103 Identities=20% Similarity=0.124 Sum_probs=61.9
Q ss_pred cCCcccE--EEccCCcccccccc----ccCCCcccEEecCCCCcccc---chhhhccCCccEEecccccchhccchhhhc
Q 048829 120 KLQRLRV--FSLRGYHISELPDS----VGDLRYLRYLNLSGTNIRTL---PESVNKLYNLHSLLLEDCDRLKKLCADMGN 190 (976)
Q Consensus 120 ~l~~Lr~--L~Ls~~~i~~lp~~----~~~L~~L~~L~L~~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 190 (976)
..+.|+. ++++.|....++.. ..++++|++|+|++|.|..+ |..++.+++|++|+|++ |.+..+ ..+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~-~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE-RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG-GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCc-hhhhh
Confidence 4444554 55666654433322 24567777777777777654 35566777777777777 456555 33455
Q ss_pred cc--cCceeecCCCCCcccccc-------ccCCCCCCceecce
Q 048829 191 LI--KLHHLNNSNTDSLEETPL-------GIGKLTCLQTLCNF 224 (976)
Q Consensus 191 L~--~L~~L~l~~~~~~~~lp~-------~i~~L~~L~~L~~~ 224 (976)
+. +|++|++++|.....+|. .+..+++|+.|+..
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 54 777777777773333431 25667777777543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=7.8e-06 Score=82.88 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=62.4
Q ss_pred cCCcccEEEccCCccccc---cccccCCCcccEEecCCCCccccchhhhccC--CccEEecccccchhccc-------hh
Q 048829 120 KLQRLRVFSLRGYHISEL---PDSVGDLRYLRYLNLSGTNIRTLPESVNKLY--NLHSLLLEDCDRLKKLC-------AD 187 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~l---p~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp-------~~ 187 (976)
+++.|++|+|++|.|+.+ |..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|..-..+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 788999999999998865 46677899999999999999887 4556665 99999999964334444 23
Q ss_pred hhccccCceeec
Q 048829 188 MGNLIKLHHLNN 199 (976)
Q Consensus 188 i~~L~~L~~L~l 199 (976)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678999999874
No 159
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.63 E-value=1.3e-05 Score=92.22 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=42.9
Q ss_pred CCcHHHHHHHHHHHHHhCCCceeecC-CCCcEEEchhHHHHHHHHhccceE
Q 048829 2 EKTGEDLGLEIFKELHSRSFFQQSSN-DASRFVMHDLINDLAHWAAGEIYF 51 (976)
Q Consensus 2 ~~~~ed~g~~~~~~L~~r~l~~~~~~-~~~~~~mHDlv~dla~~~~~~~~~ 51 (976)
+.++||+|+ ||++|++|||+|+... ...+|+|||+|||+|+++++++++
T Consensus 424 ~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 424 EQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 567899999 9999999999998763 456899999999999999988764
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=2.6e-05 Score=75.18 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=45.4
Q ss_pred cCCcccEEEccCCcccc-----ccccccCCCcccEEecCCCCccc-----cchhhhccCCccEEec--ccccchhc----
Q 048829 120 KLQRLRVFSLRGYHISE-----LPDSVGDLRYLRYLNLSGTNIRT-----LPESVNKLYNLHSLLL--EDCDRLKK---- 183 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~~i~~-----lp~~~~~L~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L--~~~~~l~~---- 183 (976)
..+.|++|+|++|.|.. +...+...+.|++|+|++|.|.. +...+...+.|++|+| ++| .+..
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~ 141 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEM 141 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHH
Confidence 45566666666666542 33444445566666666666653 3445555566666666 443 3322
Q ss_pred -cchhhhccccCceeecCCCC
Q 048829 184 -LCADMGNLIKLHHLNNSNTD 203 (976)
Q Consensus 184 -lp~~i~~L~~L~~L~l~~~~ 203 (976)
+...+...++|++|++++|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCcCEEeccCCC
Confidence 23334445666666666665
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.58 E-value=3.4e-05 Score=74.44 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=78.2
Q ss_pred cCCcccEEEccCC-cccc-----ccccccCCCcccEEecCCCCccc-----cchhhhccCCccEEecccccchhc-----
Q 048829 120 KLQRLRVFSLRGY-HISE-----LPDSVGDLRYLRYLNLSGTNIRT-----LPESVNKLYNLHSLLLEDCDRLKK----- 183 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~-~i~~-----lp~~~~~L~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~----- 183 (976)
..+.|++|+|++| .+.. +...+...++|++|+|++|.|.. +...+...+.|++|+|++| .+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence 7899999999999 8753 55677778999999999999873 4556777799999999996 4443
Q ss_pred cchhhhccccCceeec--CCCCCccc-----cccccCCCCCCceecc
Q 048829 184 LCADMGNLIKLHHLNN--SNTDSLEE-----TPLGIGKLTCLQTLCN 223 (976)
Q Consensus 184 lp~~i~~L~~L~~L~l--~~~~~~~~-----lp~~i~~L~~L~~L~~ 223 (976)
+...+...++|++|++ ++|. +.. +...+...++|++|++
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEec
Confidence 4556778889999999 7787 553 2233555577777754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.90 E-value=0.01 Score=52.74 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=38.4
Q ss_pred cEEEccCCccc--cccccccCCCcccEEecCCCCccccch-hhhccCCccEEecccc
Q 048829 125 RVFSLRGYHIS--ELPDSVGDLRYLRYLNLSGTNIRTLPE-SVNKLYNLHSLLLEDC 178 (976)
Q Consensus 125 r~L~Ls~~~i~--~lp~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~ 178 (976)
.+++.++++++ .+|..+. .+|++|+|++|.|+.||. .|..+.+|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 36778888887 7776543 368888888888888864 4677788888888774
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.45 E-value=0.037 Score=49.03 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=44.0
Q ss_pred cEEecCCCCcc--ccchhhhccCCccEEecccccchhccchh-hhccccCceeecCCCC
Q 048829 148 RYLNLSGTNIR--TLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLIKLHHLNNSNTD 203 (976)
Q Consensus 148 ~~L~L~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 203 (976)
.+++.+++.++ .+|..+. .+|++|+|++ |.+..+|.+ |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 47888899888 8886543 4689999999 688899876 7889999999999986
No 164
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.22 E-value=0.088 Score=67.43 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCceeec-CCCCcEEEchhHHHHHHHHhccc
Q 048829 6 EDLGLEIFKELHSRSFFQQSS-NDASRFVMHDLINDLAHWAAGEI 49 (976)
Q Consensus 6 ed~g~~~~~~L~~r~l~~~~~-~~~~~~~mHDlv~dla~~~~~~~ 49 (976)
++.+++++++|+++||++... +...+|+|||+||++|+..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 677899999999999999865 33346999999999999998765
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.77 E-value=0.17 Score=48.15 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=50.3
Q ss_pred cCCcccEEEccCC-ccc-----cccccccCCCcccEEecCCCCcc-----ccchhhhccCCccEEecccccchhc-----
Q 048829 120 KLQRLRVFSLRGY-HIS-----ELPDSVGDLRYLRYLNLSGTNIR-----TLPESVNKLYNLHSLLLEDCDRLKK----- 183 (976)
Q Consensus 120 ~l~~Lr~L~Ls~~-~i~-----~lp~~~~~L~~L~~L~L~~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~----- 183 (976)
.-+.|+.|+|+++ .|. .+-..+..=+.|+.|+|++|.|. .|-+.+..=+.|++|+|++| .+..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHH
Confidence 4567777788774 554 23445555667888888888776 23344556677788888774 4432
Q ss_pred cchhhhccccCceeecCCC
Q 048829 184 LCADMGNLIKLHHLNNSNT 202 (976)
Q Consensus 184 lp~~i~~L~~L~~L~l~~~ 202 (976)
+-..+..-+.|++|+|+++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2223444456777777754
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.06 E-value=0.24 Score=47.04 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=72.2
Q ss_pred cCCCCccEeccccccCCCCCCCcc----ccccccccCCcccEEEccCCcccc-----ccccccCCCcccEEecCCCCccc
Q 048829 89 YDIQHLRTFLPVMLTDSSPGYLAP----SILPKLLKLQRLRVFSLRGYHISE-----LPDSVGDLRYLRYLNLSGTNIRT 159 (976)
Q Consensus 89 ~~~~~Lr~L~~~~~~~~~~~~~~~----~~~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~~~~L~~L~~L~L~~n~i~~ 159 (976)
..-+.|+.|.+.++.. +.. .+...+-.-+.|+.|+|++|.|.. +-..+..=+.|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~-----igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKR-----VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCS-----SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCC-----CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3456777776654211 111 122233366789999999999863 44555566789999999999872
Q ss_pred -----cchhhhccCCccEEeccccc--chh-----ccchhhhccccCceeecCCCC
Q 048829 160 -----LPESVNKLYNLHSLLLEDCD--RLK-----KLCADMGNLIKLHHLNNSNTD 203 (976)
Q Consensus 160 -----lp~~i~~L~~L~~L~L~~~~--~l~-----~lp~~i~~L~~L~~L~l~~~~ 203 (976)
|-+.+..=+.|++|+|++|. .+. .+-..+..=+.|+.|+++.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 34456666779999998642 222 233345566789999998765
No 167
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.16 E-value=0.58 Score=54.04 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCceeec-CCCCcEEEchhHHHHHHHHhc
Q 048829 7 DLGLEIFKELHSRSFFQQSS-NDASRFVMHDLINDLAHWAAG 47 (976)
Q Consensus 7 d~g~~~~~~L~~r~l~~~~~-~~~~~~~mHDlv~dla~~~~~ 47 (976)
+.+++++++|+++||++... +....|+|||+||++|+..+.
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 45789999999999999754 334589999999999998743
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=84.87 E-value=0.41 Score=57.22 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCceeecCCCCcEEEchhHHHHHH
Q 048829 6 EDLGLEIFKELHSRSFFQQSSNDASRFVMHDLINDLAH 43 (976)
Q Consensus 6 ed~g~~~~~~L~~r~l~~~~~~~~~~~~mHDlv~dla~ 43 (976)
++.|+++|++|++||||+.. +...+|+|||++++++.
T Consensus 401 eedAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 401 KSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SHHHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHhc
Confidence 34689999999999999985 34578999999999763
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.32 E-value=88 Score=25.46 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=23.7
Q ss_pred CCCCccccceeeccccCCCccccc-cccCCCCCCeEeecC
Q 048829 874 TLPLPASLTSLSIAFFPNLESLSS-SIVDLQNLTKLTLYD 912 (976)
Q Consensus 874 ~~~~l~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~ 912 (976)
+|..+++|+++.|-. .++.|.. .|..+.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 355666666666664 5555654 566777777777765
Done!